RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17263
(188 letters)
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 215 bits (550), Expect = 4e-72
Identities = 98/196 (50%), Positives = 129/196 (65%), Gaps = 10/196 (5%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
MG+RSS + I+ ET + + RL+ RF +LDR G LSR D +I LA+N
Sbjct: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
Query: 60 PLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKS--------KENKLNSREQKLKFA 111
PLGDRI+ FF +G S RV+F F++VLA FRP++ K LNSR KL +A
Sbjct: 61 PLGDRIIESFFPDG-SQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYA 119
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
F++YDLD D ISR E+L VL +MVG ++EEQL +IA+RT+ EAD++GD +SF EF K
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Query: 172 ALERTDVEQKMSIRFL 187
+LE+ DVEQKMSIR L
Sbjct: 180 SLEKMDVEQKMSIRIL 195
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 214 bits (546), Expect = 2e-71
Identities = 130/195 (66%), Positives = 156/195 (80%), Gaps = 9/195 (4%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
MG+R+S LLR+EE+ +I++ET + +QI RLYSRFTSLD+G+ GTLSREDF RIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 60 PLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENK-------LNSREQKLKFAF 112
PLGDRI++ FF EG D+VNFR FM+ LA FRPI+ ++++K LNSR KL FAF
Sbjct: 61 PLGDRIINAFFSEG-EDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAF 119
Query: 113 KMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
++YDLD DD ISRDELL VL MMVG NIS+EQL SIA+RTI EADQ+GD ISF EF K
Sbjct: 120 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 179
Query: 173 LERTDVEQKMSIRFL 187
LE+ DVEQKMSIRFL
Sbjct: 180 LEKVDVEQKMSIRFL 194
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 171 bits (435), Expect = 3e-55
Identities = 65/161 (40%), Positives = 103/161 (63%), Gaps = 9/161 (5%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFM 84
++I+RL RF LD + G+LS E+F+ +PEL NPL R++ +F +G + V+F++F+
Sbjct: 3 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDG-NGEVDFKEFI 61
Query: 85 QVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQ 144
+ +++F +EQKL+FAF++YD+D D IS EL VL MMVG N+ + Q
Sbjct: 62 EGVSQFSVK--------GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQ 113
Query: 145 LTSIAERTILEADQNGDQMISFDEFCKALERTDVEQKMSIR 185
L I ++TI+ AD++GD ISF+EFC + D+ +KM +
Sbjct: 114 LQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVD 154
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 170 bits (431), Expect = 6e-54
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 23/200 (11%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSL--------DRGDCGTLSREDFL 51
MG S L +E +A+ Q+ T T +I + RF L + + E L
Sbjct: 24 MGGSGSRL-SKELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQIL 82
Query: 52 RIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFA 111
+PEL NP +RI VF D ++F F+ +L+ F + + K +A
Sbjct: 83 SLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDT--------ATPDIKSHYA 134
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGA----NISEEQLTSIAERTILEADQNGDQMISFD 167
F+++D D+D ++R++L +++ + G +S ++ + + + E+D + D I+
Sbjct: 135 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Query: 168 EFCKALERT-DVEQKMSIRF 186
EF + R+ D I
Sbjct: 195 EFQHVISRSPDFASSFKIVL 214
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 160 bits (407), Expect = 9e-51
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 11 EEEIAQIQEETV-TPNQIERLYSRFTSL--------DRGDCGTLSREDFLRIPELAINPL 61
+E +A+ Q+ T T +I + RF L + + E L +PEL NP
Sbjct: 2 KELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPF 61
Query: 62 GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDD 121
+RI VF D ++F F+ +L+ F + + K +AF+++D D+D
Sbjct: 62 KERICRVFSTSPAKDSLSFEDFLDLLSVFSDT--------ATPDIKSHYAFRIFDFDDDG 113
Query: 122 AISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT- 176
++R++L +++ + G +S ++ + + + E+D + D I+ EF + R+
Sbjct: 114 TLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSP 173
Query: 177 DVEQKMSIRF 186
D I
Sbjct: 174 DFASSFKIVL 183
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 149 bits (378), Expect = 4e-46
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 1 MGNRSSLLLRE--------EEIAQIQEETV-TPNQIERLYSRFTSLD--RGDCGTLSRED 49
MG S ++ E+ + T T ++E LY F L D G + +E+
Sbjct: 1 MGCSVSKKKKKNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEE 60
Query: 50 F---LRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQ 106
F L N DRI VF + + + F +F++ L F P +
Sbjct: 61 FQLALFRNRNRRNLFADRIFDVFDVKR-NGVIEFGEFVRSLGVFHPSA--------PVHE 111
Query: 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN---ISEEQLTSIAERTILEADQNGDQM 163
K+KFAFK+YDL I R+EL ++ ++ + +SE+ + + ++ ++AD+ D
Sbjct: 112 KVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGK 171
Query: 164 ISFDEFCKALER-TDVEQKMSIRFL 187
I DE+ + + + M++ +L
Sbjct: 172 IDIDEWKDFVSLNPSLIKNMTLPYL 196
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 148 bits (374), Expect = 4e-45
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 10 REEEIAQIQEETV-TPNQIERLYSRFTSLD--RGDCGTLSREDF---LRIPELAINPLGD 63
+ + +TV + ++IE LY F + D G +++E+F L + D
Sbjct: 29 GLGDPELLARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFAD 88
Query: 64 RIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAI 123
R+ +F + + + F +F + L+ F P + K+ F+F++YDL I
Sbjct: 89 RVFDLFDTKH-NGILGFEEFARALSVFHPN--------APIDDKIHFSFQLYDLKQQGFI 139
Query: 124 SRDELLAVLHM---MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER-TDVE 179
R E+ ++ G N+ + + I ++T EAD D I +E+ + R +
Sbjct: 140 ERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLL 199
Query: 180 QKMSIRFL 187
+ M++++L
Sbjct: 200 KNMTLQYL 207
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 125 bits (315), Expect = 8e-37
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
MG +S L + E + ++ +T T ++++ Y F G L F +I +
Sbjct: 1 MGKSNSKL-KPEVVEELTRKTYFTEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYK-QFF 56
Query: 60 PLGDRIVHVF-----FEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM 114
P GD F+E R+ F +F+Q L+ + ++KL++AFK+
Sbjct: 57 PFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSR---------GTLDEKLRWAFKL 107
Query: 115 YDLDNDDAISRDELLAVLHMMVGA-------NISEEQLTSIAERTILEADQNGDQMISFD 167
YDLDND I+R+E+L ++ + E +R D+N D ++
Sbjct: 108 YDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ 167
Query: 168 EFCKALER-TDVEQKMSI 184
EF + + + Q +S+
Sbjct: 168 EFQEGSKADPSIVQALSL 185
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 124 bits (313), Expect = 2e-36
Identities = 44/198 (22%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----P 54
MG ++S L ++++ +++ T +I++ + F G L+REDF++I P
Sbjct: 1 MGAKTSKL-SKDDLTCLKQSTYFDRREIQQWHKGFLRDC--PSGQLAREDFVKIYKQFFP 57
Query: 55 ELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM 114
+ + + VF ++ + ++F +F+ VL+ + E+KL +AF++
Sbjct: 58 FGSPEDFANHLFTVFDKDN-NGFIHFEEFITVLSTTSR---------GTLEEKLSWAFEL 107
Query: 115 YDLDNDDAISRDELLAVLHMM-------VGANISEEQLTSIAERTILEADQNGDQMISFD 167
YDL++D I+ DE+L ++ + V N E ++ D+N D I+ D
Sbjct: 108 YDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Query: 168 EFCKALER-TDVEQKMSI 184
EF + + + +++
Sbjct: 168 EFREGSKVDPSIIGALNL 185
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 124 bits (313), Expect = 2e-36
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 26/195 (13%)
Query: 1 MGNRSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----P 54
MG ++S L R E + + E T T ++I+ Y F G LS E+F +I P
Sbjct: 1 MGKQNSKL-RPEVMQDLLESTDFTEHEIQEWYKGFLRDCPS--GHLSMEEFKKIYGNFFP 57
Query: 55 ELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM 114
+ + + F G ++FR+F+ L+ EQKLK+AF M
Sbjct: 58 YGDASKFAEHVFRTFDANG-DGTIDFREFIIALSVTSR---------GKLEQKLKWAFSM 107
Query: 115 YDLDNDDAISRDELLAVLHMMVGANIS-------EEQLTSIAERTILEADQNGDQMISFD 167
YDLD + IS+ E+L ++ + S E E+ + D N D +S +
Sbjct: 108 YDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
Query: 168 EFCKALERTDVEQKM 182
EF + + ++
Sbjct: 168 EFIRGAKSDPSIVRL 182
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 119 bits (299), Expect = 3e-34
Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 27/190 (14%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----P 54
MGN S L +E + ++Q T + ++ Y F G ++++ F I P
Sbjct: 8 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPT--GRITQQQFQSIYAKFFP 65
Query: 55 ELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM 114
+ + F ++F++++ L QKL++AF +
Sbjct: 66 DTDPKAYAQHVFRSFDSNL-DGTLDFKEYVIALHMTTAG---------KTNQKLEWAFSL 115
Query: 115 YDLDNDDAISRDELLAVLHMMVGAN---------ISEEQLTSIAERTILEADQNGDQMIS 165
YD+D + IS++E+L ++ + E AE+ +N D ++
Sbjct: 116 YDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLT 175
Query: 166 FDEFCKALER 175
EF +
Sbjct: 176 EKEFIEGTLA 185
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 118 bits (296), Expect = 2e-33
Identities = 35/195 (17%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 4 RSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PELA 57
+++ R E + ++ ++ T +++ LY F + G ++ E F I P+
Sbjct: 42 MATVRHRPEALELLEAQSKFTKKELQILYRGFKNEC--PSGVVNEETFKEIYSQFFPQGD 99
Query: 58 INPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDL 117
+ + F + + V+F F++ L+ + ++KL +AF +YD+
Sbjct: 100 STTYAHFLFNAFDTDH-NGAVSFEDFIKGLSILLR---------GTVQEKLNWAFNLYDI 149
Query: 118 DNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 170
+ D I+++E+L ++ + E+ E + D+N D +++ DEF
Sbjct: 150 NKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFI 209
Query: 171 KALER-TDVEQKMSI 184
++ ++ ++ + M +
Sbjct: 210 ESCQKDENIMRSMQL 224
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 115 bits (289), Expect = 6e-33
Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 10 REEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PELAINPLGD 63
R E + Q++ +T T +++ LY F + G ++ E F +I P +
Sbjct: 2 RPEGLEQLEAQTNFTKRELQVLYRGFKNEX--PSGVVNEETFKQIYAQFFPHGDASTYAH 59
Query: 64 RIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAI 123
+ + F + V F F+ L+ + +KL++ F +YD++ D I
Sbjct: 60 YLFNAFDTTQ-TGSVKFEDFVTALSILLR---------GTVHEKLRWTFNLYDINKDGYI 109
Query: 124 SRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176
+++E++ ++ + E+ + + D+N D +++ DEF ++ +
Sbjct: 110 NKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQED 169
Query: 177 D 177
D
Sbjct: 170 D 170
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 114 bits (287), Expect = 2e-32
Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 2 GNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PE 55
G S L ++++ + T ++++ Y F G L++ +F +I P
Sbjct: 2 GKSQSKL-SQDQLQDLVRSTRFDKKELQQWYKGFFKDC--PSGHLNKSEFQKIYKQFFPF 58
Query: 56 LAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMY 115
+ + + +VF + + ++F++F+ L+ KL +AF++Y
Sbjct: 59 GDPSAFAEYVFNVFDADK-NGYIDFKEFICALSVTSR---------GELNDKLIWAFQLY 108
Query: 116 DLDNDDAISRDELLAVLHMM-------VGANISEEQLTSIAERTILEADQNGDQMISFDE 168
DLDN+ IS DE+L ++ + V E+ + D+N D ++ +E
Sbjct: 109 DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
Query: 169 FCKALER 175
FC+ +R
Sbjct: 169 FCEGSKR 175
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 113 bits (285), Expect = 5e-32
Identities = 34/188 (18%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 3 NRSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PEL 56
+ + R E + Q++ +T T +++ LY F + G ++ E F +I P
Sbjct: 28 EMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPS--GVVNEETFKQIYAQFFPHG 85
Query: 57 AINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYD 116
+ + + F + V F F+ L+ + +KL++ F +YD
Sbjct: 86 DASTYAHYLFNAFDTTQ-TGSVKFEDFVTALSILLR---------GTVHEKLRWTFNLYD 135
Query: 117 LDNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQMISFDEF 169
++ D I+++E++ ++ + E+ + + D+N D +++ DEF
Sbjct: 136 INKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 195
Query: 170 CKALERTD 177
++ + D
Sbjct: 196 LESCQEDD 203
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 111 bits (280), Expect = 2e-31
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 31/198 (15%)
Query: 1 MGNRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
MG + S EE + Q++ Y +F L+ GTL +F R ++ N
Sbjct: 1 MGQQFSW----EEAEENGAVGAADAAQLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDN 54
Query: 60 PLGDRIVHVFFEEGCSDR---VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYD 116
+ V F ++ ++F +++ L + E KLK+ FK+YD
Sbjct: 55 EEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR---------GTLEHKLKWTFKIYD 105
Query: 117 LDNDDAISRDELLAVLHMM------------VGANISEEQLTSIAERTILEADQNGDQMI 164
D + I R ELL ++ + + +R L D+NGD +
Sbjct: 106 KDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQL 165
Query: 165 SFDEFCKALERTDVEQKM 182
S +EF + R KM
Sbjct: 166 SLNEFVEGARRDKWVMKM 183
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 106 bits (266), Expect = 8e-29
Identities = 40/196 (20%), Positives = 86/196 (43%), Gaps = 26/196 (13%)
Query: 3 NRSSLLLREEEIAQIQEETV-TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PEL 56
S++ + E + Q+Q +T T +++ LY F + G + + F I P+
Sbjct: 68 ELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNEC--PTGLVDEDTFKLIYSQFFPQG 125
Query: 57 AINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYD 116
+ + F +G + ++F F+ L+ + +KLK+AF +YD
Sbjct: 126 DATTYAHFLFNAFDADG-NGAIHFEDFVVGLSILLR---------GTVHEKLKWAFNLYD 175
Query: 117 LDNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQMISFDEF 169
++ D I+++E+LA++ + E+ ER + D+N D +++ DEF
Sbjct: 176 INKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEF 235
Query: 170 CKALERT-DVEQKMSI 184
+ ++ ++ M +
Sbjct: 236 LETCQKDENIMNSMQL 251
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 103 bits (258), Expect = 4e-28
Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 23 TPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELA-INPLGDRIVHVFFEEGCSDR---V 78
+ + + Y +F + G L+ +F + L ++P ++ V FE ++ +
Sbjct: 12 SATECHQWYKKFMTECPS--GQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYI 69
Query: 79 NFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA 138
+F +++ L+ +QKL++ FK+YD+D + I R ELL ++ +
Sbjct: 70 DFMEYVAALSLVLK---------GKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAI 120
Query: 139 NISEEQLTS--IAERTILEADQNGDQMISFDEFCKALERTDVEQKMSIRFL 187
N E +T+ + D NGD +S +EF + +++ +V + R L
Sbjct: 121 NRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSL 171
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 96.8 bits (241), Expect = 2e-25
Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 1 MGNRSSLLLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-----PE 55
MGN S+ ++ + + Y F G + +F +
Sbjct: 3 MGNGKSIAGDQKAV--------PTQETHVWYRTFMMEY--PSGLQTLHEFKTLLGLQGLN 52
Query: 56 LAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMY 115
N D++ + F V+F +F+ + EQKLK+ FK+Y
Sbjct: 53 QKANKHIDQVYNTFDTNK-DGFVDFLEFIAAVNLIMQE---------KMEQKLKWYFKLY 102
Query: 116 DLDNDDAISRDELLAVLH-MMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174
D D + +I ++ELL + + + D N D ++ +EF +
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162
Query: 175 R-TDVEQKMSIRF 186
+ D+ + + F
Sbjct: 163 KDQDLLEIVYKSF 175
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 89.5 bits (222), Expect = 1e-22
Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 22/187 (11%)
Query: 3 NRSSLLLREEEIA-QIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPL 61
N S LR Q E + P + RLY RF + D G + ++ L P+ +
Sbjct: 10 NESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLV 69
Query: 62 GDR---------IVHVFFEEGCSD---RVNFRQFMQVLARFR--PIKKSKENKLNSREQK 107
V VFF + + +++ F ++ + + +
Sbjct: 70 NATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALL 129
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFD 167
+ + D D D + DEL ++ ++ +E A +AD + +
Sbjct: 130 SNSYYDVLDDDGDGTVDVDELKTMMKAF---DVPQEA----AYTFFEKADTDKSGKLERT 182
Query: 168 EFCKALE 174
E
Sbjct: 183 ELVHLFR 189
Score = 54.1 bits (130), Expect = 2e-09
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMM---VGANISE-EQLTSIAERTILEADQNGD 161
+L F +DLD+D + DE+L M V A + E++ L
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPV 95
Query: 162 QMISFDEFCKALER 175
+ +++ +A
Sbjct: 96 NGLLREDWVEANRV 109
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 79.8 bits (197), Expect = 4e-19
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 21/169 (12%)
Query: 20 ETVTPNQIERLYSRFTSLDR-GDCGTLSREDFLRIPELAINPLG----------DRIVHV 68
E+ + ++ +R +D GD G +SRED+ I + V
Sbjct: 6 ESERAYHLRKMKTRMQRVDVTGD-GFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRV 64
Query: 69 FFEEGC--SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRD 126
+ G R++ + + K K + + + D D D +S
Sbjct: 65 ADQLGLAPGVRISVEEAAVNATDS--LLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLP 122
Query: 127 ELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
E A L + G ++++++ + D N + IS DEF +
Sbjct: 123 EFKAFLQAV-GPDLTDDKAITC----FNTLDFNKNGQISRDEFLVTVND 166
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 78.5 bits (193), Expect = 4e-19
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 90 FRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM-------VGANISE 142
+ E ++ S ++ FKM+D D ++ + EL + + +SE
Sbjct: 53 LEGVINKPEAEM-SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSE 111
Query: 143 EQLTSIAERTILEADQNGDQMISFDEFCKALE 174
++L +I + + + D+N D I + EF K+L+
Sbjct: 112 DELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 74.1 bits (182), Expect = 5e-17
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 22/174 (12%)
Query: 15 AQIQEETVTPNQIERLYSRFTSLDR-GDCGTLSREDFLRIPE------LAINP----LGD 63
+++ + P I R F LD + G +S ++ + L P
Sbjct: 3 SKLTSDFDNPRWIGRHKHMFNFLDVNHN-GKISLDEMVYKASDIVINNLGATPEQAKRHK 61
Query: 64 RIVHVFFEE---GCSDRVNFRQFMQVLARFR--PIKKSKENKLNSREQKLKFAFKMYDLD 118
V FF ++ +++ + ++K +N+ F + D D
Sbjct: 62 DAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKD 121
Query: 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
+ AI+ DE A G S E E T D + + DE +
Sbjct: 122 QNGAITLDEWKAYTKAA-GIIQSSEDC----EETFRVCDIDESGQLDVDEMTRQ 170
Score = 47.1 bits (112), Expect = 4e-07
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 95 KSKENKLNSRE-QKLKFAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTSIA 149
K + N R + K F D++++ IS DE++ +V GA + +
Sbjct: 4 KLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD- 62
Query: 150 ERTILEADQNGD-----QMISFDEFCKALERTDVEQK 181
+EA G + + + ++ ++
Sbjct: 63 ---AVEAFFGGAGMKYGVETDWPAYIEGWKKLATDEL 96
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 72.9 bits (179), Expect = 1e-16
Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 20/167 (11%)
Query: 20 ETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE------LAINP----LGDRIVHVF 69
+ P I+R F LD G ++ ++ + L P V F
Sbjct: 12 DFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAF 71
Query: 70 FEE---GCSDRVNFRQFMQVLARFRPIKKSKENKLNSR--EQKLKFAFKMYDLDNDDAIS 124
F + F QF+ + + K + + F ++D D I+
Sbjct: 72 FRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTIT 131
Query: 125 RDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
DE A + G + S+E E T D + + DE +
Sbjct: 132 LDEWKAYGKIS-GISPSQEDC----EATFRHCDLDNAGDLDVDEMTR 173
Score = 46.3 bits (110), Expect = 9e-07
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTS-IAERTILEADQNG 160
++ K F D++ + I+ DE+++ + A + + E
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEY 79
Query: 161 DQMISFDEFCKALER 175
+ I+F +F ++
Sbjct: 80 GKEIAFPQFLDGWKQ 94
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 72.6 bits (178), Expect = 3e-16
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 26/181 (14%)
Query: 12 EEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLR--IPELAINPLGDRIVHVF 69
E I Q T +R F D+ + G L ++ + L ++ R+ +
Sbjct: 32 ERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDIT 91
Query: 70 FEEGC-----------SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLD 118
+F +F++ I +L F D
Sbjct: 92 KRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYI---------YDFFELTVMFDEIDAS 142
Query: 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178
+ + +E + + E ++ E D+NG ++FDEF +
Sbjct: 143 GNMLVDEEEFKRAVPKLEAWGAKVEDPAAL----FKELDKNGTGSVTFDEFAAWASAVKL 198
Query: 179 E 179
+
Sbjct: 199 D 199
Score = 35.6 bits (82), Expect = 0.004
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 46/138 (33%)
Query: 84 MQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEE 143
+ + + P +K+ E K Q+ FK +D + + DE+ + ++ +
Sbjct: 31 WERIRQAIPREKTAEAK-----QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTS 85
Query: 144 QLTSIAERTILEA-----------------------------------------DQNGDQ 162
++ I +R ++ D +G+
Sbjct: 86 RVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNM 145
Query: 163 MISFDEFCKALERTDVEQ 180
++ +EF +A+ + +
Sbjct: 146 LVDEEEFKRAVPKLEAWG 163
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 68.6 bits (168), Expect = 4e-15
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 26 QIERLYSRFTSLDR-GDCGTLSREDFLRIPELAINPLGD---------RIVHVFFEEGCS 75
++++ + F +D D G ++R DF + E + ++ +
Sbjct: 4 WVQKMKTYFNRIDFDKD-GAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLT 62
Query: 76 D-----RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLA 130
++ F+ + ++K E L F+ D + D+ ISRDE
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVV----EGPLPLFFRAVDTNEDNNISRDEYGI 118
Query: 131 VLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
M+ + + A + D N D ++S +EF A
Sbjct: 119 FFGML---GLDKTM----APASFDAIDTNNDGLLSLEEFVIA 153
Score = 47.8 bits (114), Expect = 2e-07
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLH-MMVGANISEEQLTSIAER-----TILEAD 157
QK+K F D D D AI+R + ++ + + E + +
Sbjct: 4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTA 63
Query: 158 QNGDQMISFDEFCKALER 175
G + I F +++
Sbjct: 64 VAGGKGIDETTFINSMKE 81
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 64.6 bits (158), Expect = 2e-14
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQM 163
+ +L+ AFK D + D ++ EL + + +S++++ + + I AD+N D
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 164 ISFDEFCKALERTDVEQK 181
IS +EF A + K
Sbjct: 66 ISKEEFLNANAELLCQLK 83
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 69.7 bits (171), Expect = 2e-14
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 27/178 (15%)
Query: 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFL--------RIPELAINP 60
L + I I + T + + L F LD+ G L +++ + EL
Sbjct: 336 LAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELK 395
Query: 61 LGDRIVHVFFEEGCSDR---VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDL 117
+ V +E D+ + + +F+ V + L E++L+ AF ++D
Sbjct: 396 NVEEEVDNILKEVDFDKNGYIEYSEFISVC--------MDKQIL-FSEERLRRAFNLFDT 446
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
D I+++EL ++ +ISE+ + + EADQN D MI FDEF + +
Sbjct: 447 DKSGKITKEEL---ANLFGLTSISEKTWNDV----LGEADQNKDNMIDFDEFVSMMHK 497
Score = 35.1 bits (81), Expect = 0.009
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 41/124 (33%)
Query: 99 NKLNSREQ--KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER--TIL 154
+KL + E+ +L FK D + D + + EL+ +++ +L ++ E IL
Sbjct: 346 SKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNIL 405
Query: 155 EA-------------------------------------DQNGDQMISFDEFCKALERTD 177
+ D + I+ +E T
Sbjct: 406 KEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTS 465
Query: 178 VEQK 181
+ +K
Sbjct: 466 ISEK 469
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 67.4 bits (165), Expect = 9e-14
Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 27/178 (15%)
Query: 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFL--------RIPELAINP 60
L + + + + + + + L F +D+ G L R++ + + P
Sbjct: 327 LAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLP 386
Query: 61 LGDRIVHVFFEEGCSDR---VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDL 117
+ V DR +++ +F+ V L + KL+ AF+ +D
Sbjct: 387 QIESEVDAILGAADFDRNGYIDYSEFVTVA--------MDRKSL-LSKDKLESAFQKFDQ 437
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
D + IS DEL + ++ + + I D N D + F+EFCK +++
Sbjct: 438 DGNGKISVDEL---ASVFGLDHLESKTWKEM----ISGIDSNNDGDVDFEEFCKMIQK 488
Score = 33.9 bits (78), Expect = 0.027
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 41/124 (33%)
Query: 99 NKLNSREQ--KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER--TIL 154
+KL S+E+ +L F+ D + D + R EL+ + G ++ L I IL
Sbjct: 337 SKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAIL 396
Query: 155 EA-------------------------------------DQNGDQMISFDEFCKALERTD 177
A DQ+G+ IS DE
Sbjct: 397 GAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDH 456
Query: 178 VEQK 181
+E K
Sbjct: 457 LESK 460
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 67.4 bits (165), Expect = 1e-13
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 31/182 (17%)
Query: 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDF--------------LRIP 54
L + + + + T ++ ++L F LD + G L R++
Sbjct: 312 LAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSL 371
Query: 55 ELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFA 111
+ + D + + +F +A ++++ A
Sbjct: 372 IQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEF---IASAIDRTIL------LSRERMERA 422
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
FKM+D D IS EL + ++I E+L SI I + D N D + F+EF +
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQA-DSSIQMEELESI----IEQVDNNKDGEVDFNEFVE 477
Query: 172 AL 173
L
Sbjct: 478 ML 479
Score = 48.1 bits (115), Expect = 4e-07
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 99 NKLNSREQ--KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE- 155
+KL + ++ +L F+ D +ND + RDEL+ H + + E + +E
Sbjct: 322 SKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIED 381
Query: 156 --------ADQNGDQMISFDEFCKA-LERTDVEQKMSIR 185
D +G I + EF + ++RT + + +
Sbjct: 382 QIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERME 420
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 64.8 bits (158), Expect = 1e-13
Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 28/170 (16%)
Query: 23 TPNQIERLYSRFTSLDR-GDCGTLSREDFLRIPELAINPLG---------------DRIV 66
T +RL RF D G+ G L R DF + + G +
Sbjct: 2 TAIASDRLKKRFDRWDFDGN-GALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLF 60
Query: 67 HVFFEEGCSD---RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAI 123
+E + QF++V + +K M D + D I
Sbjct: 61 DYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPV-VKGIVGMCDKNADGQI 119
Query: 124 SRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ DE A L + +S+ + A + D NG+ +S DE A+
Sbjct: 120 NADEFAAWLTAL---GMSKAE----AAEAFNQVDTNGNGELSLDELLTAV 162
Score = 54.0 bits (130), Expect = 1e-09
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMV---GANISEEQL-------TSIAERTI 153
+LK F +D D + A+ R + + G + ++ + +
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLA 64
Query: 154 LEADQNGDQMISFDEFCKALERTDVEQK 181
EA D ++ ++F + E EQ
Sbjct: 65 KEAGVGSDGSLTEEQFIRVTENLIFEQG 92
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 67.0 bits (164), Expect = 1e-13
Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 30/181 (16%)
Query: 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDF-----------LRIPELA 57
L + + + + + ++ + L + F +D+ G L R + + +
Sbjct: 316 LAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASML 375
Query: 58 INPLGDRIVHVFFEEG---CSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM 114
+ V + + + + +F+ V L ++L+ AF+M
Sbjct: 376 DASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVA--------MDRKTL-LSRERLERAFRM 426
Query: 115 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174
+D DN IS EL + +++ E S+ + E D+N D + FDEF + L
Sbjct: 427 FDSDNSGKISSTEL---ATIFGVSDVDSETWKSV----LSEVDKNNDGEVDFDEFQQMLL 479
Query: 175 R 175
+
Sbjct: 480 K 480
Score = 33.5 bits (77), Expect = 0.033
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 44/127 (34%)
Query: 99 NKLNSREQ--KLKFAFKMYDLDNDDAISRDELLAVLH----------MMVGANISEEQLT 146
+KL S+++ +L F D + D + R EL+ M+ A+ E ++
Sbjct: 326 SKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVD 385
Query: 147 SI----------------------------AERTILEA----DQNGDQMISFDEFCKALE 174
+ + + A D + IS E
Sbjct: 386 QVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFG 445
Query: 175 RTDVEQK 181
+DV+ +
Sbjct: 446 VSDVDSE 452
Score = 31.2 bits (71), Expect = 0.19
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 130 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQKMSIRFL 187
A L M S+++ + + D+NGD + E + + + L
Sbjct: 319 AALLYMGSKLTSQDETKELTA-IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASML 375
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 62.9 bits (154), Expect = 4e-13
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
V+F F++++ K E ++L+ AF+ +D + D IS EL +
Sbjct: 61 GGHVDFDDFVELMGP----KLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRA 116
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
++G + + I I + D NGD + F+EF + + R
Sbjct: 117 LLGHQVGHRDIEEI----IRDVDLNGDGRVDFEEFVRMMSR 153
Score = 54.1 bits (131), Expect = 8e-10
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
E+ L+ AF+ +D D D I+ +L + M G +E +L + + + N
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIEL----SQQINMNL 60
Query: 161 DQMISFDEFCKALER 175
+ FD+F + +
Sbjct: 61 GGHVDFDDFVELMGP 75
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 63.0 bits (154), Expect = 4e-13
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
S ++F +F+ ++ R + KE+ E++L F+++D + D I +EL +L
Sbjct: 70 SGTIDFEEFLVMMVR-----QMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 124
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G +++EE + + + ++D+N D I FDEF K
Sbjct: 125 T-GEHVTEEDIEDL----MKDSDKNNDGRIDFDEFLK 156
Score = 54.9 bits (133), Expect = 5e-10
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 88 ARFRPIKKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQL 145
A + L S E K AF M+D D IS EL V+ M+ G N ++E+L
Sbjct: 1 ASMTDQQAEARAFL-SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEEL 58
Query: 146 TSIAERTILEADQNGDQMISFDEFCKALER 175
+I I E D++G I F+EF + R
Sbjct: 59 DAI----IEEVDEDGSGTIDFEEFLVMMVR 84
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 63.7 bits (155), Expect = 4e-13
Identities = 22/176 (12%), Positives = 52/176 (29%), Gaps = 26/176 (14%)
Query: 17 IQEETVTPNQIERLYSRFTSL-DRGDCGTLSREDFLRIPELAINPLG------------- 62
+ ++ Q ++ F + D G + +DF + N
Sbjct: 1 MAAHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARA 60
Query: 63 --DRIVHVFFEEGCSD---RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDL 117
I + + +V +++++ A + E+ + + F F + D
Sbjct: 61 TLKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDT 120
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
D+ I + E V I + + G M++ + F +
Sbjct: 121 SGDNIIDKHEYSTVYMSY---GIPKSD----CDAAFDTLSDGGKTMVTREIFARLW 169
Score = 49.8 bits (119), Expect = 5e-08
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 104 REQKLKFAFK-MYDLDNDDAISRDELLAVLHMMVGANISE----------EQLTSIAERT 152
+ K+ F YD ++D I D+ + + + L I +
Sbjct: 10 QRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGL 69
Query: 153 ILEADQNGDQMISFDEFCKALERT 176
AD+N D+ ++ +E+ K
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAEC 93
Score = 42.9 bits (101), Expect = 1e-05
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 73 GCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM---YDLDNDDAISRDELL 129
G + +F ++ + + +R + D + D+ ++++E L
Sbjct: 28 GVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWL 87
Query: 130 AVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALERTDVEQ 180
+ V + E L + + D +GD +I E+ + +
Sbjct: 88 KMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPK 142
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 62.2 bits (152), Expect = 7e-13
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ ++F F + AR +E +Q+L+ AF++YD + + IS D + +L
Sbjct: 64 NGDIDFDSFKIIGAR----FLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAE 119
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177
+ +S E L ++ I E D +G + F+EF + D
Sbjct: 120 L-DETLSSEDLDAM----IDEIDADGSGTVDFEEFMGVMTGGD 157
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 62.1 bits (151), Expect = 9e-13
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 29/167 (17%)
Query: 28 ERLYSRFTSLDR-GDCGTLSREDFLRI--------PELAINPLGDRIVHVFFEEGC---- 74
R+ +RFT+ D+ G+ G + R DF A + G +
Sbjct: 4 RRIAARFTTFDQDGN-GHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 75 ------SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDEL 128
R+ +F+ + ++ + L A + D D D A++ +
Sbjct: 63 IADRDGDQRITREEFVTGAVK--RLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 129 LAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
L + E+ A + D +GD + E A R
Sbjct: 121 ARALTAF---GVPEDL----ARQAAAALDTDGDGKVGETEIVPAFAR 160
Score = 53.2 bits (128), Expect = 2e-09
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERT-------I 153
E+++ F +D D + I R + M G ++ ++
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLA 61
Query: 154 LEADQNGDQMISFDEFCKALER 175
AD++GDQ I+ +EF +
Sbjct: 62 GIADRDGDQRITREEFVTGAVK 83
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 61.8 bits (151), Expect = 1e-12
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
S V+F +F+ ++ R K++ E++L F+M+D + D I +EL +L
Sbjct: 69 SGTVDFDEFLVMMVR-----SMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQA 123
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G I+E+ + + + + D+N D I +DEF +
Sbjct: 124 T-GETITEDDIEEL----MKDGDKNNDGRIDYDEFLE 155
Score = 49.1 bits (118), Expect = 6e-08
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 93 IKKSKENKLNSREQK--LKFAFKMYDLD-NDDAISRDELLAVLHMMVGANISEEQLTSIA 149
I K+ +L + EQK K AF ++ L D +IS EL V+ M+ G N + E+L +
Sbjct: 4 IYKAAVEQL-TEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEM- 60
Query: 150 ERTILEADQNGDQMISFDEFCKALER 175
I E D++G + FDEF + R
Sbjct: 61 ---IDEVDEDGSGTVDFDEFLVMMVR 83
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 60.3 bits (147), Expect = 1e-12
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL-- 132
++++F ++ + ++K F++ D D I +EL VL
Sbjct: 21 PGTFDYKRFFHLVGL-----------KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG 69
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G ++++ + ++ + D + D I DEF K
Sbjct: 70 FSAHGRDLNDTETKAL----LAAGDSDHDGKIGADEFAK 104
Score = 25.2 bits (56), Expect = 7.3
Identities = 6/65 (9%), Positives = 17/65 (26%), Gaps = 15/65 (23%)
Query: 114 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 169
+ + ++ ++ Q+ E D++ I +E
Sbjct: 15 ISAFKDPGTFDYKRFFH---LVGLKGKTDAQV--------KEVFEILDKDQSGFIEEEEL 63
Query: 170 CKALE 174
L+
Sbjct: 64 KGVLK 68
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 62.2 bits (152), Expect = 2e-12
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMM-VGANISEEQLTSIAERTILEADQNGDQ 162
+++ FK +D+D + IS +EL + + + ++ + S+ + E D NGD
Sbjct: 127 KKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSL----LQEVDLNGDG 182
Query: 163 MISFDEFCK 171
I F EF
Sbjct: 183 EIDFHEFML 191
Score = 52.6 bits (127), Expect = 4e-09
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ L+ F D+DN +S E+L L + G + + + + D N
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQV----LRDIDSNA 106
Query: 161 DQMISFDEFCKA 172
I + +F A
Sbjct: 107 SGQIHYTDFLAA 118
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 62.1 bits (151), Expect = 2e-12
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 24/159 (15%)
Query: 20 ETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDR-- 77
T+ +Q R+Y F +DR GTL + + L + +D
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNG 102
Query: 78 -VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMV 136
++F +FM + + F M + E+L L +
Sbjct: 103 HISFYEFMA---------------MYKFMELAYNLFVMNARARSGTLEPHEILPALQQL- 146
Query: 137 GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
G I++ + G + +
Sbjct: 147 GFYINQR-----TSLLLHRLFARGMAFCDLNCWIAICAF 180
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 60.2 bits (147), Expect = 3e-12
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVG 137
++ +F + ++ + + LK +K+ D+D D ++++E+ +
Sbjct: 53 IDQNEFAKFYGS-----IQGQDLSDD-KIGLKVLYKLMDVDGDGKLTKEEVTSFF----- 101
Query: 138 ANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
E++ +++AD NGD I+ +EF +
Sbjct: 102 KKHGIEKVAEQ----VMKADANGDGYITLEEFLE 131
Score = 55.6 bits (135), Expect = 1e-10
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFD 167
+ FK D++ D A+S +E+ A + A +E+ L I D +G+ I +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLLQLI----FKSIDADGNGEIDQN 56
Query: 168 EFCKALERTDVEQK 181
EF K +
Sbjct: 57 EFAKFYGSIQGQDL 70
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 62.8 bits (152), Expect = 3e-12
Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 17/184 (9%)
Query: 7 LLLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIV 66
+L +EE I + + D G +S + + +I
Sbjct: 83 ILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIP 142
Query: 67 HVFFEEGCSD-----------RVNFRQFMQVLAR---FRPIKKSKENKLNSREQKLKFAF 112
+E R++ ++LA F K + R++ + F
Sbjct: 143 PNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIF 202
Query: 113 KMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILEADQNGDQMISFDEF 169
YD+ A+ E+ + M V +IS L E + D N D I E
Sbjct: 203 AHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSEL 262
Query: 170 CKAL 173
L
Sbjct: 263 ALCL 266
Score = 46.6 bits (110), Expect = 1e-06
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGA-----NISEEQLTSIAERTILEADQNGDQ 162
++ +D D++ I EL M+ I++E++ I + + D D
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDG 72
Query: 163 MISFDEFCKALERTDVEQKMSIR 185
+ +E + + + R
Sbjct: 73 RLQIEELANMILPQEENFLLIFR 95
Score = 26.6 bits (58), Expect = 5.3
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT--ILEA----DQ 158
+Q K YD D + +EL ++ + + + + + ++ D
Sbjct: 56 QQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDA 115
Query: 159 NGDQMISFDEFCKALERTDVEQKMSI 184
+ IS E L+ ++ K I
Sbjct: 116 DSSGYISAAELKNFLKDLFLQHKKKI 141
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 62.6 bits (152), Expect = 3e-12
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM- 135
++ + VL + ++ ++ YD D+ I +EL L +
Sbjct: 74 KIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLL 133
Query: 136 --VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177
+ + +L + + D N D + E + L +
Sbjct: 134 EKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQE 177
Score = 56.8 bits (137), Expect = 3e-10
Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 12/177 (6%)
Query: 8 LLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVH 67
+L EE + E + D G + E+ + + +
Sbjct: 83 VLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDD 142
Query: 68 VFFEEGCSD-----------RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYD 116
E ++ + ++L + ++ AF++YD
Sbjct: 143 TKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKE-FNKAFELYD 201
Query: 117 LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
D + I +EL A+L + N E + +I+ + + + L
Sbjct: 202 QDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
Score = 31.0 bits (70), Expect = 0.20
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+ + F++ L K +K + K++D +ND + E+ +L +
Sbjct: 121 ETEELKNFLKDLLE----KANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLL-PV 175
Query: 136 VGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALER 175
+ + Q + + +A DQ+G+ I +E L+
Sbjct: 176 QENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKD 219
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 58.7 bits (143), Expect = 3e-12
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
E+++ AFK++D + D I DE ++ + +++ ++ + EAD++G+ +
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA----MKEADEDGNGV 61
Query: 164 ISFDEFCKALERTDVEQK 181
I EF ++++ K
Sbjct: 62 IDIPEFMDLIKKSKNALK 79
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 61.1 bits (149), Expect = 4e-12
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
++ + AF+++D+DND I+ EL +L+ ++ + +R I + D+N D I
Sbjct: 121 KKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKI 180
Query: 165 SFDEFCK 171
F EF +
Sbjct: 181 DFHEFSE 187
Score = 53.0 bits (128), Expect = 3e-09
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 87 LARFRPIKKSKENKLN------SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGA 138
+ + K ++ + + LK F + D D I++++L L G
Sbjct: 25 FKNYGLLLKFQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKD-GL 83
Query: 139 NISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
+ + + + D +G I + EF A
Sbjct: 84 KLPYN-----FDLLLDQIDSDGSGKIDYTEFIAA 112
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 59.5 bits (145), Expect = 6e-12
Identities = 12/101 (11%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ + Q ++ +K + ++ + AF+++D ++ +S +L +L
Sbjct: 55 ASSLTLDQITGLIEVN---EKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTG 111
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
+ G +++ ++ + + + + + I + +F + + R
Sbjct: 112 L-GEKLTDAEVDEL----LKGVEVDSNGEIDYKKFIEDVLR 147
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 58.4 bits (142), Expect = 7e-12
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+D N++ F + +K AF + D D I DEL L +
Sbjct: 22 ADSFNYKAFFAKVGL-----------TAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQV 70
Query: 135 M--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+++ + + + D +GD I DE+
Sbjct: 71 FSAGARALTDAETKAF----LKAGDSDGDGAIGVDEWAA 105
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 60.0 bits (146), Expect = 8e-12
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
++L AF+ +D D I+ +EL + + +E + + E D+N D
Sbjct: 121 SRERLLAAFQQFDSDGSGKITNEEL---GRLFGVTEVDDETWHQV----LQECDKNNDGE 173
Query: 164 ISFDEFCKALER-TDVE 179
+ F+EF + +++ DV+
Sbjct: 174 VDFEEFVEMMQKICDVK 190
Score = 26.1 bits (58), Expect = 5.5
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 130 AVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALERTDVEQKMSIR 185
A + M + E+ E + + D NGD + E + + + ++
Sbjct: 24 AAMLFMGSKLTTLEE---TKE--LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVS 78
Query: 186 FL 187
L
Sbjct: 79 DL 80
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 56.7 bits (138), Expect = 1e-11
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+R L+ AF+ +D D D I+ DEL + + G + +E+L ++ I EAD +
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGL-GQPLPQEELDAM----IREADVDQ 55
Query: 161 DQMISFDEFCK 171
D ++++EF +
Sbjct: 56 DGRVNYEEFAR 66
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 57.9 bits (140), Expect = 1e-11
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 90 FRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA 149
R I + S + F+ +D + ISR+E A+ + +++EQ
Sbjct: 8 DRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRR-VQILTDEQF---- 62
Query: 150 ERTILEADQNGDQMISFDEFCKALERTDVEQKMS 183
+R E N + + +F M+
Sbjct: 63 DRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMA 96
Score = 27.4 bits (61), Expect = 1.2
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 11 EEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFF 70
+ +A++ + + + F + D T+SRE+F I + L D +
Sbjct: 9 RDILARLHK--AVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLW 66
Query: 71 EEGCSD---RVNFRQFMQVLAR 89
E + R+ + F+ +
Sbjct: 67 NEMPVNAKGRLKYPDFLSRFSS 88
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 56.3 bits (137), Expect = 2e-11
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFD 167
K F+ +D + D +S DE V ++E + E D +G+ ++ D
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAF-SPYFTQEDIVKF----FEEIDVDGNGELNAD 57
Query: 168 EFCKALER 175
EF +E+
Sbjct: 58 EFTSCIEK 65
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 58.4 bits (142), Expect = 2e-11
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 23 TPNQIERLYSRFTSLDRGDCGTLSRE---DFLRIPELAINP----LGDRIVHVFFEEGCS 75
+Q+E F DR G + D +R L NP + + + +E S
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMR--ALGQNPTNAEVLKVLGNPKSDELKS 62
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM 135
RV+F F+ +L +K + E F+++D + + + EL VL +
Sbjct: 63 RRVDFETFLPMLQA-----VAKNRGQGTYED-YLEGFRVFDKEGNGKVMGAELRHVLTTL 116
Query: 136 VGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G ++EE++ T+L ++ + I+++ F K
Sbjct: 117 -GEKMTEEEV-----ETVLAGHEDSNGCINYEAFLK 146
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+++Q K AF+++D D I + V+ + G N + ++ + ++D+
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGN--PKSDELK 61
Query: 161 DQMISFDEFCKALER 175
+ + F+ F L+
Sbjct: 62 SRRVDFETFLPMLQA 76
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 60.7 bits (147), Expect = 2e-11
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 24/161 (14%)
Query: 18 QEETVTPNQIERLYSRFTSLDRGDCGTLSREDF---LRIPELAINP----LGDRIVHVFF 70
+ +T QI F+ D+ GT++ ++ +R L NP L D I V
Sbjct: 302 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR--SLGQNPTEAELQDMINEV-- 357
Query: 71 EEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLA 130
+ + ++F +F+ ++AR K K+ +S E+ + AF+++D D + IS EL
Sbjct: 358 DADGNGTIDFPEFLTMMAR-----KMKDT--DSEEEIRE-AFRVFDKDGNGYISAAELRH 409
Query: 131 VLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
V+ + G +++E++ + I EAD +GD ++++EF +
Sbjct: 410 VMTNL-GEKLTDEEVDEM----IREADIDGDGQVNYEEFVQ 445
Score = 57.6 bits (139), Expect = 2e-10
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVL 132
++F++ +L + + EQ K AF ++D D D I+ EL V+
Sbjct: 282 LKGIDFKEDGNILGHK---LEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVM 338
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
+ G N +E +L + I E D +G+ I F EF + R
Sbjct: 339 RSL-GQNPTEAELQDM----INEVDADGNGTIDFPEFLTMMAR 376
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 57.2 bits (139), Expect = 4e-11
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ + F V + + +++ AF+ D + + I EL +L
Sbjct: 52 AKEFDLATFKTVYRK-------PIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLN 104
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G ++ ++ + + E +GD I+++ F
Sbjct: 105 L-GDALTSSEVEEL----MKEVSVSGDGAINYESFVD 136
Score = 45.6 bits (109), Expect = 7e-07
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
+++ F+++D DND +S +EL + L + G N + +L +I + +
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRSL-GKNPTNAELNTI----KGQLNAKE---F 55
Query: 165 SFDEFC-----KALERTDVEQ 180
F T+ +
Sbjct: 56 DLATFKTVYRKPIKTPTEQSK 76
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 55.7 bits (135), Expect = 5e-11
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
E++LK AFK++D D + IS EL V+ + G +++E++ + I EAD +GD
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQM----IKEADLDGDGQ 61
Query: 164 ISFDEFCK 171
++++EF K
Sbjct: 62 VNYEEFVK 69
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 57.5 bits (140), Expect = 5e-11
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 97 KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 156
NK+ + L AF +D D I+ DEL + + ++ + + +
Sbjct: 91 HLNKIERED-HLFAAFTYFDKDGSGYITPDELQQACEEF---GVEDVRIEEL----MRDV 142
Query: 157 DQNGDQMISFDEFCKALERTDVE 179
DQ+ D I ++EF +++ +
Sbjct: 143 DQDNDGRIDYNEFVAMMQKGSIT 165
Score = 37.9 bits (89), Expect = 5e-04
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 35/113 (30%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI------------ 148
S E+ LK F M D D I+ +EL A L + GAN+ E ++ +
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRV-GANLKESEILDLMQAADVDNSGTI 80
Query: 149 ----------------AERTILEA----DQNGDQMISFDEFCKALERTDVEQK 181
E + A D++G I+ DE +A E VE
Sbjct: 81 DYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDV 133
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 57.7 bits (140), Expect = 5e-11
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 30/167 (17%)
Query: 21 TVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEG---CSDR 77
+V N I+ + F LD G+LS + + LA + ++ +
Sbjct: 32 SVINNHIKYINELFYKLDTNHNGSLSHREIYTV--LASVGIKKWDINRILQALDINDRGN 89
Query: 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVG 137
+ + +FM R + LK AF D D D IS+ ++ + ++
Sbjct: 90 ITYTEFMAGCYR--------WKNIE--STFLKAAFNKIDKDEDGYISKSDI---VSLVHD 136
Query: 138 ANISEEQLTSIAERTILEADQNGD--------QMISFDEFCKALERT 176
+ + + L ISF EF + T
Sbjct: 137 KVLDNNDIDNF----FLSVHSIKKGIPREHIINKISFQEFKDYMLST 179
Score = 49.2 bits (118), Expect = 6e-08
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ + F D +++ ++S E+ VL + I + + I + D N I+
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASV---GIKKWDINRI----LQALDINDRGNIT 91
Query: 166 FDEFCKALERTDVEQKMSIR 185
+ EF R + ++
Sbjct: 92 YTEFMAGCYRWKNIESTFLK 111
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 56.7 bits (138), Expect = 6e-11
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ ++NF F+ V+ + K ++ +++E+ + AFK++D D IS L V
Sbjct: 56 TGKMNFGDFLTVMTQ-------KMSEKDTKEE-ILKAFKLFDDDETGKISFKNLKRVAKE 107
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G N+++E+L + I EAD++GD +S EF +
Sbjct: 108 L-GENLTDEELQEM----IDEADRDGDGEVSEQEFLR 139
Score = 53.6 bits (130), Expect = 8e-10
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQK ++ AF ++D D I EL + + G +E++ + I E D+ G
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIKKM----ISEIDKEG 55
Query: 161 DQMISFDEFCKALER 175
++F +F + +
Sbjct: 56 TGKMNFGDFLTVMTQ 70
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 55.4 bits (134), Expect = 6e-11
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
E++++ AF++ D D + IS EL V+ + G +++E++ + I EAD +GD +
Sbjct: 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEM----IREADIDGDGQV 82
Query: 165 SFDEFCK 171
+++EF +
Sbjct: 83 NYEEFVQ 89
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 57.6 bits (139), Expect = 6e-11
Identities = 21/174 (12%), Positives = 54/174 (31%), Gaps = 28/174 (16%)
Query: 22 VTPNQIERLYSRFTS-LDR-GDCGTLSREDF-------LRIPELAINPLGDRIVHVFFEE 72
+ Q +++ F LD D G++ DF + + +++ + + E+
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHD-GSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLED 60
Query: 73 -----------GCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDD 121
D V++ +++ + + KS + + ++ F FK D+ D
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 122 AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
+ +E ++ G + + + R
Sbjct: 121 IVDLEEFQNYCKNF-QLQCAD------VPAVYNVITDGGKVTFDLNRYKELYYR 167
Score = 48.4 bits (115), Expect = 1e-07
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 104 REQKLKFAFK-MYDLDNDDAISRDELLAVLH---MMVGANISEEQ-------LTSIAERT 152
++QK+KF F D+++D +I ++ ++ + ++S+ L
Sbjct: 6 QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDL 65
Query: 153 ILEADQNGDQMISFDEFCKALERTDVEQKMSIRF 186
AD N D ++S++E+ E+T K
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADL 99
Score = 40.7 bits (95), Expect = 7e-05
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKM---YDLDNDDAISRDELLAVL 132
+F M S + + + + D++ DD +S +E LA+
Sbjct: 27 QDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMW 86
Query: 133 HMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALERTDVEQ 180
+ S L + + I D +GD ++ +EF + ++
Sbjct: 87 EKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQC 138
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 56.8 bits (138), Expect = 7e-11
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ + F V+ K K + ++ +K AF+++D D+ IS L V
Sbjct: 73 RHLMKYDDFYIVMGE-------KILKRDPLDE-IKRAFQLFDDDHTGKISIKNLRRVAKE 124
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G +++E+L ++ I E D +GD I+ +EF
Sbjct: 125 L-GETLTDEELRAM----IEEFDLDGDGEINENEFIA 156
Score = 51.4 bits (124), Expect = 7e-09
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
EQK + AF ++D++ND + EL + + G + + ++ + I E D G
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKAL-GFELPKREILDL----IDEYDSEG 72
Query: 161 DQMISFDEFC 170
++ +D+F
Sbjct: 73 RHLMKYDDFY 82
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 55.6 bits (135), Expect = 8e-11
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL-- 132
+D ++F + + +K AF + D D I DEL L
Sbjct: 21 ADSFKHKEFFAKVGL-----------ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQN 69
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+++ + + + + D++GD MI DEF
Sbjct: 70 FSPSARALTDAETKAF----LADGDKDGDGMIGVDEFAA 104
Score = 25.2 bits (56), Expect = 8.8
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 114 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 169
+ D+ E A + A+ S + + +A DQ+ I DE
Sbjct: 15 LAACSAADSFKHKEFFA---KVGLASKSLDDV--------KKAFYVIDQDKSGFIEEDEL 63
Query: 170 CKALE 174
L+
Sbjct: 64 KLFLQ 68
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 56.8 bits (138), Expect = 9e-11
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 13/102 (12%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
S ++F +F+ ++ K + +SRE+ + AF+++D DN I+ +L V
Sbjct: 78 SGTIDFEEFLTMMTA-------KMGERDSREE-ILKAFRLFDDDNSGTITIKDLRRVAKE 129
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176
+ G N++EE+L + I EAD+N D I DEF + +++T
Sbjct: 130 L-GENLTEEELQEM----IAEADRNDDNEIDEDEFIRIMKKT 166
Score = 53.0 bits (128), Expect = 2e-09
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 94 KKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 151
+K L + EQK ++ AF ++D D I EL + + G +E++ +
Sbjct: 15 QKKGRVGL-TEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEIKKM--- 69
Query: 152 TILEADQNGDQMISFDEFC 170
I E D++G I F+EF
Sbjct: 70 -ISEIDKDGSGTIDFEEFL 87
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 55.3 bits (134), Expect = 1e-10
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL-- 132
N ++F ++ S + +K FK D D I +EL VL
Sbjct: 22 EGSFNHKKFFALVGLK---AMSAND--------VKKVFKAIDADASGFIEEEELKFVLKS 70
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G ++++ + + + AD++GD I DEF
Sbjct: 71 FAADGRDLTDAETKAF----LKAADKDGDGKIGIDEFET 105
Score = 24.8 bits (55), Expect = 9.9
Identities = 6/66 (9%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 114 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 169
+ + + + + + A ++ +S + + D + I +E
Sbjct: 16 LDAVKAEGSFNHKKFFA---LVGLKAMSANDV--------KKVFKAIDADASGFIEEEEL 64
Query: 170 CKALER 175
L+
Sbjct: 65 KFVLKS 70
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 55.0 bits (133), Expect = 1e-10
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVL--HMMVGANISEEQLTSIAERTILEADQNGD 161
++K F + D D I +EL L ++ + + + D +GD
Sbjct: 40 TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAF----LAAGDTDGD 95
Query: 162 QMISFDEFCK 171
I +EF
Sbjct: 96 GKIGVEEFQS 105
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 54.5 bits (132), Expect = 1e-10
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 94 KKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 151
++++ S E K AF M+D D IS EL V+ M+ G N ++E+L +I
Sbjct: 6 QQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAI--- 61
Query: 152 TILEADQNGDQMISFDEFCKALER 175
I E D++G I F+EF + R
Sbjct: 62 -IEEVDEDGSGTIDFEEFLVMMVR 84
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVG 137
+++ +F+ RE+ L AF +D D I+ DE+
Sbjct: 63 IDYGEFIAATVHL---------NKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDF-- 111
Query: 138 ANISEEQLTSIAERTILEADQNGDQMISFDEFC-----KALERTDVEQKMSIRF 186
+ + + + I E DQ+ D I + EF + + M
Sbjct: 112 -GLDDIHIDDM----IKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTL 160
Score = 31.4 bits (72), Expect = 0.089
Identities = 6/57 (10%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLH 133
++++ +F ++ + + + L+ A + D ++ I H
Sbjct: 132 QIDYGEFAAMMRKRKGNGGIGRRTMRKTL-NLRDALGLVDNGSNQVIEGYFKHHHHH 187
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 57.1 bits (138), Expect = 3e-10
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 29/153 (18%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVF---FEEGCSD---RV 78
N + L + F +D GTLSR++F LG V F D V
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFRE----HFVRLGFDKKSVQDALFRYADEDESDDV 240
Query: 79 NFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA 138
F +++ + L+ + D D +S++E+ VL
Sbjct: 241 GFSEYVHLGLC---------------LLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIP 285
Query: 139 NISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ ++ D + + +S+ EF
Sbjct: 286 ESARKKFEHQ----FSVVDVDDSKSLSYQEFVM 314
Score = 55.6 bits (134), Expect = 9e-10
Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 24/156 (15%)
Query: 20 ETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSD--- 76
++ L F S G S +D ++ + + + + F +D
Sbjct: 114 PMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKG 173
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMV 136
R+++ + + + L F+ D +++ +SR E +
Sbjct: 174 RMSYITLVA---------------VANDLAALVADFRKIDTNSNGTLSRKEFREHFVRL- 217
Query: 137 GANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
S+ + AD++ + F E+
Sbjct: 218 -----GFDKKSVQDALFRYADEDESDDVGFSEYVHL 248
Score = 39.0 bits (91), Expect = 4e-04
Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 35/134 (26%)
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLN------SREQK--LKFAFKMYDLDNDDAISRDE 127
D +Q + L + S N+L S E L+ F + S +
Sbjct: 84 DAAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQD 143
Query: 128 LLAVLHMMVGANISEEQLTSIAERT----------------------ILEA----DQNGD 161
L VL I E L + ++ D N +
Sbjct: 144 LKQVLAKY-ADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKIDTNSN 202
Query: 162 QMISFDEFCKALER 175
+S EF + R
Sbjct: 203 GTLSRKEFREHFVR 216
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 54.2 bits (131), Expect = 3e-10
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL--H 133
D + ++F Q++ K K +K F + D D I DEL ++L
Sbjct: 22 DSFDHKKFFQMVGL-----KKKS------ADDVKKVFHILDKDKSGFIEEDELGSILKGF 70
Query: 134 MMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176
++S ++ ++ + D++GD I +EF + +
Sbjct: 71 SSDARDLSAKETKTL----MAAGDKDGDGKIGVEEFSTLVAES 109
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 54.7 bits (132), Expect = 3e-10
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ + V+A +++ L F + I+ + L +
Sbjct: 17 KMETKYEDMLPVMAEKMDVEEFVSE--------LCKGFSLLADPERHLITAESLRRNSGI 68
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176
+ +S+E + + E D +GD ++ EFC + R
Sbjct: 69 LGIEGMSKEDAQGM----VREGDLDGDGALNQTEFCVLMVRL 106
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 55.2 bits (134), Expect = 4e-10
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ ++F +F+ ++AR K K+ E++++ AF+++D D + IS EL V+
Sbjct: 61 NGTIDFPEFLTMMAR-----KMKDT---DSEEEIREAFRVFDKDGNGYISAAELRHVMTN 112
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G +++E++ + I EAD +GD ++++EF +
Sbjct: 113 L-GEKLTDEEVDEM----IREADIDGDGQVNYEEFVQ 144
Score = 53.3 bits (129), Expect = 2e-09
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQ K AF ++D D D I+ EL V+ + G N +E +L + I E D +G
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADG 60
Query: 161 DQMISFDEFCKALER 175
+ I F EF + R
Sbjct: 61 NGTIDFPEFLTMMAR 75
Score = 30.6 bits (70), Expect = 0.19
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAIS 124
+VN+ +F+Q++ K +R++ ++ +
Sbjct: 136 QVNYEEFVQMMT-----AKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 55.4 bits (134), Expect = 5e-10
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 159
L+ ++ F+ D D + +E+ A L G +SE+ ++ + + D+
Sbjct: 87 DLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSS-GYQVSEQTFQAL----MRKFDRQ 141
Query: 160 GDQMISFDEFCKALER 175
+ FD++ +
Sbjct: 142 RRGSLGFDDYVELSIF 157
Score = 25.3 bits (56), Expect = 10.0
Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 26/107 (24%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSD-------R 77
+ I + F D G L + A+ G ++ F+
Sbjct: 90 HFILSMREGFRKRDSSGDGRLDSNEVRA----ALLSSGYQVSEQTFQALMRKFDRQRRGS 145
Query: 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAIS 124
+ F ++++ +++ F YD + ++
Sbjct: 146 LGFDDYVELSIF---------------VCRVRNVFAFYDRERTGQVT 177
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 54.4 bits (132), Expect = 5e-10
Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ ++F +F+ ++AR K + +S E+ L AFK++D D + IS EL V+
Sbjct: 60 NGTIDFPEFLSLMAR-------KMKEQDSEEE-LIEAFKVFDRDGNGLISAAELRHVMTN 111
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G ++++++ + I EAD +GD I+++EF +
Sbjct: 112 L-GEKLTDDEVDEM----IREADIDGDGHINYEEFVR 143
Score = 52.1 bits (126), Expect = 3e-09
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQ K AF ++D D D I+ EL V+ + G N +E +L + I E D +G
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADG 59
Query: 161 DQMISFDEFCKALER 175
+ I F EF + R
Sbjct: 60 NGTIDFPEFLSLMAR 74
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 52.4 bits (126), Expect = 1e-09
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 85 QVLARFRPIKKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142
++ +F K ++ + K + +DL+ + I L +L + G +
Sbjct: 10 EINKQFLDDPKYSSDED-LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTH 67
Query: 143 EQLTSIAERTILEADQNGDQMISFDEFCK 171
+L + I E + S+ +F +
Sbjct: 68 LELKKL----IGEVSSGSGETFSYPDFLR 92
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 53.7 bits (130), Expect = 1e-09
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 19/162 (11%)
Query: 23 TPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDRIVHVFFEEGCSDRVNFR 81
+IE FT +D+ G + ++D + + + + +E S +NF
Sbjct: 20 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-SGPINFT 78
Query: 82 QFMQVLARFRPIKKSKENKLNSR--EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN 139
F+ + KL E + AFK+ D D +I + L +L G
Sbjct: 79 VFLTMFGE----------KLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-GGR 127
Query: 140 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQK 181
+ E++ + + + + C + + +
Sbjct: 128 FTPEEI----KNMWAAFPPDVAGNVDYKNICYVITHGEDAEG 165
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 51.7 bits (125), Expect = 1e-09
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
S EQK +K AF ++D + +I EL + + G ++ + ++ + + E D+ G
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRAL-GFDVKKPEILEL----MNEYDREG 56
Query: 161 DQMISFDEFCKALER 175
+ I FD+F +
Sbjct: 57 NGYIGFDDFLDIMTE 71
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 51.8 bits (125), Expect = 1e-09
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
S E+ LK FKM D DN I+ DEL L + G+ + E ++ + + AD +
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDL----MDAADIDK 72
Query: 161 DQMISFDEFCKA 172
I + EF A
Sbjct: 73 SGTIDYGEFIAA 84
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 52.3 bits (126), Expect = 1e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQ 162
+LK F++ D D I DEL L ++ + + + AD +GD
Sbjct: 40 SSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTF----LAAADHDGDG 95
Query: 163 MISFDEFCK 171
I +EF +
Sbjct: 96 KIGAEEFQE 104
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 51.1 bits (123), Expect = 2e-09
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 96 SKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTI 153
S++ K+ + E++ K AF+++D DND+ ++ +EL V+ + GAN ++++++ I +
Sbjct: 2 SEQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRAL-GANPTKQKISEI----V 56
Query: 154 LEADQNGDQMISFDEFCKALER 175
+ D++ + F +
Sbjct: 57 KDYDKDNSGKFDQETFLTIMLE 78
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 51.9 bits (125), Expect = 2e-09
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQ 162
++K F+ D D + DEL L ++E + S+ + AD +GD
Sbjct: 40 ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSL----MDAADNDGDG 95
Query: 163 MISFDEFCK 171
I DEF +
Sbjct: 96 KIGADEFQE 104
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 53.5 bits (129), Expect = 2e-09
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 85 QVLARFRPIKKSKENKLNSRE---QKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANIS 141
+ A ++K + L+ Q L F+ D D ++ DE L + G +
Sbjct: 13 HMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKL-GLVLD 71
Query: 142 EEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ + + + D+NG + +EF +AL
Sbjct: 72 QAEAEGV----CRKWDRNGSGTLDLEEFLRAL 99
Score = 48.9 bits (117), Expect = 1e-07
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 25/162 (15%)
Query: 21 TVTPNQIERLYSRFTSLDRGDCGTLSREDFLR-IPELAINPLGDRIVHVFFE---EGCSD 76
+ + I+ L F LDR +L ++F + + +L + V + G S
Sbjct: 30 SRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNG-SG 88
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL---- 132
++ +F++ L + RE + AF D D ++ D+L V
Sbjct: 89 TLDLEEFLRALRP-----PMSQA----REAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRA 139
Query: 133 HMMV--GANISEEQLTSIAERTILEADQN-GDQMISFDEFCK 171
H V G +E L + D + D ++ EF
Sbjct: 140 HPKVRSGEWTEDEVLRRF----LDNFDSSEKDGQVTLAEFQD 177
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 52.5 bits (127), Expect = 2e-09
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSR--EQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+NF F+ + KLN E ++ AF +D + I D L +L
Sbjct: 55 PINFTMFLTMFGE----------KLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTT 104
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
M G ++E++ + EA + ++ EF + L
Sbjct: 105 M-GDRFTDEEV----DEMYREAPIDKKGNFNYVEFTRIL 138
Score = 43.3 bits (103), Expect = 6e-06
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ Q K AF M D + D I +++L +L M G N ++E L +
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASM-GKNPTDEYLEGM--------MSEA 52
Query: 161 DQMISFDEFCKALER 175
I+F F
Sbjct: 53 PGPINFTMFLTMFGE 67
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 52.5 bits (127), Expect = 3e-09
Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query: 23 TPNQIERLYSRFTSLDRGDCGTLSREDF---LRIPELAINP----LGDRIVHVFFEEGCS 75
+ + F DR ++ R L NP + + + EE +
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIAR--ALGQNPTNAEINKILGNPSKEEMNA 60
Query: 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+ F +F+ +L + + E +++D + + + EL VL +
Sbjct: 61 AAITFEEFLPMLQA-----AANNKDQGTFED-FVEGLRVFDKEGNGTVMGAELRHVLATL 114
Query: 136 VGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
G ++EE++ +++ ++ + I+++ F K
Sbjct: 115 -GEKMTEEEV-----EELMKGQEDSNGCINYEAFVK 144
Score = 46.8 bits (112), Expect = 3e-07
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
S+ K AF ++D D I+ ++ + + G N + ++ I ++
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGN--PSKEEMN 59
Query: 161 DQMISFDEFCKALER 175
I+F+EF L+
Sbjct: 60 AAAITFEEFLPMLQA 74
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 52.1 bits (126), Expect = 3e-09
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQ K AF ++D DN +IS EL V+ + G + SE ++ + + E D +G
Sbjct: 6 TEEQIAEFKEAFALFDKDNSGSISASELATVMRSL-GLSPSEAEVADL----MNEIDVDG 60
Query: 161 DQMISFDEFCKALER 175
+ I F EF + R
Sbjct: 61 NHAIEFSEFLALMSR 75
Score = 50.5 bits (122), Expect = 1e-08
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ + F +F+ +++R + K N EQ+L AFK++D + D IS EL VL
Sbjct: 61 NHAIEFSEFLALMSR-----QLKCND---SEQELLEAFKVFDKNGDGLISAAELKHVLTS 112
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
+ G +++ ++ + + E +G I+ +F L +
Sbjct: 113 I-GEKLTDAEVDEM----LREVS-DGSGEINIKQFAALLSK 147
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 50.3 bits (121), Expect = 4e-09
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
+ FK +D + D IS EL L + +++ +++ + + E D +GD I
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDALKTL--GSVTPDEVRRM----MAEIDTDGDGFI 63
Query: 165 SFDEFCKALER 175
SFDEF
Sbjct: 64 SFDEFTDFARA 74
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 50.3 bits (121), Expect = 4e-09
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 105 EQKLKFAFKMYDLDNDDA--ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQ 162
+++K AF+++ D IS++EL V+ + G ++ + T + I E D+NGD
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTL-GPSLLKGMST--LDEMIEEVDKNGDG 60
Query: 163 MISFDEFCKALERT 176
+SF+EF +++
Sbjct: 61 EVSFEEFLVMMKKI 74
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 51.8 bits (124), Expect = 4e-09
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 94 KKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTI 153
K S + L S+ + K + +DL+ + I L +L + G + +L + I
Sbjct: 36 KYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTHLELKRL----I 90
Query: 154 LEADQNGDQMISFDEFCK 171
E ++ S+ +F +
Sbjct: 91 REVSSGSEETFSYSDFLR 108
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 49.9 bits (120), Expect = 5e-09
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
++ FK +D + D IS EL L + G+ ++E +R + E D +GD I
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTL-GSTSADE-----VQRMMAEIDTDGDGFI 55
Query: 165 SFDEFCK 171
F+EF
Sbjct: 56 DFNEFIS 62
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 51.5 bits (124), Expect = 9e-09
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ + F+ YD DN I ++EL L G +S++ + I + D+ G
Sbjct: 69 VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF-GYRLSDQFHDIL----IRKFDRQG 123
Query: 161 DQMISFDEFCKALER 175
I+FD+F +
Sbjct: 124 RGQIAFDDFIQGCIV 138
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 51.0 bits (122), Expect = 9e-09
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 94 KKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTI 153
K S E L + K + +DL+N+ I L ++ + G + ++ + I
Sbjct: 38 KYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL-GVPKTHLEMKKM----I 92
Query: 154 LEADQNGDQMISFDEFCK 171
E IS+ +F
Sbjct: 93 SEVTGGVSDTISYRDFVN 110
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 48.7 bits (117), Expect = 1e-08
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFD 167
+ FK D++ D A+S +E+ A + A +E+ L + D +G+ I +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLL----QLIFKSIDADGNGEIDQN 56
Query: 168 EFCKAL 173
EF K
Sbjct: 57 EFAKFY 62
Score = 31.4 bits (72), Expect = 0.027
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVL 132
EQ L+ FK D D + I ++E
Sbjct: 35 EQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Score = 26.4 bits (59), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 155 EADQNGDQMISFDEFCKALER 175
E D NGD +S++E + +
Sbjct: 8 EIDVNGDGAVSYEEVKAFVSK 28
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 49.7 bits (119), Expect = 1e-08
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
+L+ F D + + R+E A+ + + E D + D
Sbjct: 25 ELARLRSVFAACDANRSGRLEREEFRALCTEL---RVRPADA----EAVFQRLDADRDGA 77
Query: 164 ISFDEFCKAL 173
I+F EF +
Sbjct: 78 ITFQEFARGF 87
Score = 26.2 bits (58), Expect = 2.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 12 EEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP 60
E Q ++ RL S F + D G L RE+F + EL + P
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP 60
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 50.6 bits (122), Expect = 1e-08
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 105 EQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQ 162
+Q K AF+++D + I+++ L VL G + + EAD G+
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQF-GVRVEPAAFNEM----FNEADATGNG 57
Query: 163 MISFDEFCKALER 175
I F EF + R
Sbjct: 58 KIQFPEFLSMMGR 70
Score = 49.0 bits (118), Expect = 4e-08
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ ++ F +F+ ++ R + K+ + E L+ AF+ +D + I + L L
Sbjct: 56 NGKIQFPEFLSMMGR-----RMKQT---TSEDILRQAFRTFDPEGTGYIPKAALQDALLN 107
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G + + + + I +D F
Sbjct: 108 L-GDRLKPHEFAEF----LGITETE-KGQIRYDNFIN 138
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 50.2 bits (121), Expect = 2e-08
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMV 136
+NF F+ + + K E+ ++ AF M+D ++ + + +L M
Sbjct: 66 PLNFTMFLSIFSD-----KLSGT---DSEETIRNAFAMFDEQETKKLNIEYIKDLLENM- 116
Query: 137 GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQ 180
G N +++++ T EA G + + +F ++ + E+
Sbjct: 117 GDNFNKDEM----RMTFKEAPVEGGK-FDYVKFTAMIKGSGEEE 155
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 103 SREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
++Q +K AF M D+D D +S++++ A+ + G +++LT++ +
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAM--------LKEA 63
Query: 161 DQMISFDEFCKALER 175
++F F
Sbjct: 64 PGPLNFTMFLSIFSD 78
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 49.9 bits (120), Expect = 2e-08
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMV 136
+ + + S ++ + ++ AFK +D + IS E+ VL M+
Sbjct: 62 AYKLEEILPIYEE-----MSSKDTGTAADE-FMEAFKTFDREGQGLISSAEIRNVLKML- 114
Query: 137 GANISEEQLTSIAERTILEAD--QNGDQMISFDEFCKAL 173
G I+E+Q I D ++ D I +++ K +
Sbjct: 115 GERITEDQCNDI----FTFCDIREDIDGNIKYEDLMKKV 149
Score = 47.2 bits (113), Expect = 3e-07
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 103 SREQK--LKFAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ 158
++++ ++ F ++D D + ++ +L + G N +E Q+ +
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCL-GMNPTEAQV-----HQHGGTKK 57
Query: 159 NGDQMISFDEFCKALER 175
G++ +E E
Sbjct: 58 MGEKAYKLEEILPIYEE 74
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSR--EQKLKFAFKMYDLDNDDAISRDELLAVL 132
+NF F+ + ++ E + AF ++D + D + L L
Sbjct: 103 PGPINFTMFLTIFGD----------RIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSL 151
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQ 180
G S++++ ++ + EA +G+ +I +F + L + E+
Sbjct: 152 TTW-GEKFSQDEV----DQALSEAPIDGNGLIDIKKFAQILTKGAKEE 194
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 49.1 bits (118), Expect = 5e-08
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 103 SREQK--LKFAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ 158
S+++ LK F+++D D A+ +L V + G N E + + +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCL-GINPRNEDV-----FAVGGTHK 57
Query: 159 NGDQMISFDEFCKALER 175
G++ + F+EF A E
Sbjct: 58 MGEKSLPFEEFLPAYEG 74
Score = 46.8 bits (112), Expect = 4e-07
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
+ F +F+ + + AFK +D + IS EL VL
Sbjct: 60 EKSLPFEEFLPAYEGL--MDCEQGT-----FADYMEAFKTFDREGQGFISGAELRHVLTA 112
Query: 135 MVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFCK 171
+ G +S+E + I I D ++ + + +++F K
Sbjct: 113 L-GERLSDEDVDEI----IKLTDLQEDLEGNVKYEDFVK 146
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 47.5 bits (113), Expect = 1e-07
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ +LK+ F +D ++ + +L +++ + QL SI +D +
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQ---SSLPQAQLASIWN----LSDIDQ 61
Query: 161 DQMISFDEFCKALERTDVEQK 181
D ++ +EF A+ DV
Sbjct: 62 DGKLTAEEFILAMHLIDVAMS 82
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 47.5 bits (114), Expect = 1e-07
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
V+ QF+QVL R + + E+ F+++D D I EL VL
Sbjct: 51 PAEVDMEQFLQVLNR-----PNGFDMPGDPEE-FVKGFQVFDKDATGMIGVGELRYVLTS 104
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ G +S E++ + + D M+++ +F +
Sbjct: 105 L-GEKLSNEEM----DELLKGVPVK-DGMVNYHDFVQ 135
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
+ K AF ++D I + + +L G N + + I E + +
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRAC-GQNPTLAE--------ITEIESTLPAEV 54
Query: 165 SFDEFCKALER 175
++F + L R
Sbjct: 55 DMEQFLQVLNR 65
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 45.5 bits (108), Expect = 4e-07
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
S +K K+ F D D D +S E+ + + + L I D
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREI---FLKTGLPSTLLAHIWS----LCDTKD 57
Query: 161 DQMISFDEFCKAL 173
+S D+F A
Sbjct: 58 CGKLSKDQFALAF 70
Score = 26.2 bits (58), Expect = 3.0
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQL 145
L + + D + +S+D+ H++ I
Sbjct: 43 STLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKGIDP 83
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 45.7 bits (108), Expect = 4e-07
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 97 KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA-----------NISEEQL 145
+ + L+ K F ++D+++D + EL A+ + EE+
Sbjct: 11 ELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEER 70
Query: 146 TSIAERTILEADQNGDQMISFDEFCKALERTD 177
+ E + D N D++++ +EF + +R +
Sbjct: 71 LRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 46.4 bits (111), Expect = 4e-07
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSR--EQKLKFAFKMYDLDNDDAISRDELLAVLHM 134
++NF F+ + K++ E L+ AF M+D D I D L +L
Sbjct: 64 QLNFTAFLTLFGE----------KVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLEN 113
Query: 135 MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVE 179
M G N S+E++ + +A ++ ++++ + + E
Sbjct: 114 M-GDNFSKEEI----KNVWKDAPLK-NKQFNYNKMVDIKGKAEDE 152
Score = 39.4 bits (93), Expect = 1e-04
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 94 KKSKENKLNSREQK--LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 151
+ + KL S+ Q LK AF M D D D I ++L + + G +++L ++
Sbjct: 3 EAPRRVKL-SQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL-GRVPPDDELNAM--- 57
Query: 152 TILEADQNGDQMISFDEFCKALER 175
+ ++F F
Sbjct: 58 -----LKECPGQLNFTAFLTLFGE 76
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 46.1 bits (110), Expect = 6e-07
Identities = 13/105 (12%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 71 EEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLA 130
+E D + + Q+++ L+ + ++ E+ L F +D + +++ ++
Sbjct: 57 KELYGDNLTYEQYLEYLSI-------CVHDKDNVEE-LIKMFAHFDNNCTGYLTKSQMKN 108
Query: 131 VLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
+L G +++++ + + I + FC+ + +
Sbjct: 109 ILTTW-GDALTDQEAIDA----LNAFSSEDN--IDYKLFCEDILQ 146
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 43.6 bits (103), Expect = 2e-06
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQ+ + FK D + I + +L+ I +D +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS---KLPILELSHI----WELSDFDK 56
Query: 161 DQMISFDEFCKAL 173
D ++ DEFC A
Sbjct: 57 DGALTLDEFCAAF 69
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 43.2 bits (102), Expect = 2e-06
Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFD 167
+ F F + + +++++L ++ + ++ ++ + + DQ D + F
Sbjct: 11 MMFTFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
Query: 168 EFCKAL 173
F +
Sbjct: 70 SFFSLI 75
Score = 26.3 bits (58), Expect = 2.7
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 40 GDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEE--GCSD-RVNFRQFMQVLAR 89
GD G L++ED P N V ++ C D +V F+ F ++A
Sbjct: 20 GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 43.6 bits (103), Expect = 3e-06
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ EQ+ + F+ D IS + +S +L+ I E +D +
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTK---SKLSIPELSYIWE----LSDADC 69
Query: 161 DQMISFDEFCKAL 173
D ++ EFC A
Sbjct: 70 DGALTLPEFCAAF 82
Score = 25.9 bits (57), Expect = 5.4
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+L + +++ D D D A++ E A H++
Sbjct: 55 IPELSYIWELSDADCDGALTLPEFCAAFHLI 85
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 43.9 bits (104), Expect = 5e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 159
+L + K F D D + EL + +M G +S + LT+I + +N
Sbjct: 64 ELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLM-GYRLSPQTLTTI----VKRYSKN 118
Query: 160 GDQMISFDEFCKALER 175
G I FD++ +
Sbjct: 119 G--RIFFDDYVACCVK 132
Score = 30.0 bits (68), Expect = 0.24
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSD-RVNFRQF 83
+ F ++D+ GT+ + + L L + + + + R+ F +
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDY 126
Query: 84 MQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAIS 124
+ + + L F+ D + +
Sbjct: 127 VACCVKL---------------RALTDFFRKRDHLQQGSAN 152
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNGDQMISFDEFCKALER 175
D + +EL L G N + + R I D++ + F+ F +
Sbjct: 11 GQDGEVDAEELQRCLTQS-GINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA 68
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
L + +K + +K +D+D I EL G +++E + I R +
Sbjct: 72 LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA-GFHLNEHLYSMIIRR-----YSDE 125
Query: 161 DQMISFDEFCKALER 175
+ FD F L R
Sbjct: 126 GGNMDFDNFISCLVR 140
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 159
+L + + F +D D + EL L M G +S + + SI N
Sbjct: 97 ELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTM-GFRLSPQAVNSI----AKRYSTN 151
Query: 160 GDQMISFDEFCKALER 175
G I+FD++ +
Sbjct: 152 GK--ITFDDYIACCVK 165
Score = 29.3 bits (66), Expect = 0.53
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSD-RVNFRQF 83
+ F S D GT+ ++ + L + V+ + ++ ++ F +
Sbjct: 100 AVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDY 159
Query: 84 MQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAIS 124
+ + R + +F+ D ++
Sbjct: 160 IACCVKLRALTD---------------SFRRRDTAQQGVVN 185
Score = 29.0 bits (65), Expect = 0.78
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNGDQM 163
+ L F D I DEL L G + R + D++
Sbjct: 32 QDPLYGYFAAVA-GQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRDMSGT 89
Query: 164 ISFDEFCKALER 175
+ F+EF +
Sbjct: 90 MGFNEFKELWAV 101
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 40.8 bits (96), Expect = 6e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 159
+L + + F +D D + EL L M G ++ + + SI +
Sbjct: 66 ELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTM-GFRLNPQTVNSI----AKRYSTS 120
Query: 160 GDQMISFDEFCKALER 175
G I+FD++ +
Sbjct: 121 GK--ITFDDYIACCVK 134
Score = 28.5 bits (64), Expect = 0.96
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSD-RVNFRQF 83
+ F S D GT+ ++ + L + V+ + + ++ F +
Sbjct: 69 AVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDY 128
Query: 84 MQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAIS 124
+ + + L +F+ D ++
Sbjct: 129 IACCVKL---------------RALTDSFRRRDSAQQGMVN 154
Score = 25.8 bits (57), Expect = 7.1
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNGDQMISF 166
L F D I DEL L G + R + D++ + F
Sbjct: 4 LYGYFASVA-GQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 61
Query: 167 DEFCKALER 175
+EF +
Sbjct: 62 NEFKELWAV 70
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 40.8 bits (95), Expect = 7e-05
Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 21/160 (13%)
Query: 28 ERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVF-----FEEGCSDRVNFRQ 82
+ RF L G L R F + + ++ + V +F + +
Sbjct: 28 AAVEKRFNQLQVD--GVLLRSRFGKC--IGMDGSDEFAVQMFDSLARKRGIVKQVLTKDE 83
Query: 83 FMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN--- 139
+ + +L+ F M D + D ++ +E+ ++ + AN
Sbjct: 84 LKDFYEQLTD---------QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLS 134
Query: 140 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVE 179
+E+ + E D I ++ L ++ E
Sbjct: 135 KIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSE 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 27/203 (13%), Positives = 62/203 (30%), Gaps = 62/203 (30%)
Query: 8 LLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVH 67
+L +EEI I + + F +L + +V
Sbjct: 45 ILSKEEIDHIIMS---KDAVSGTLRLFWTLLSK---------------------QEEMVQ 80
Query: 68 VFFEEGCSDRVNFRQFMQVLARFRPIKKSKE--------NKLN-----------SREQ-- 106
F EE R+N++ M + + + S ++L SR Q
Sbjct: 81 KFVEE--VLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 107 -KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM-- 163
KL+ A + +L R ++ ++G+ + + + + ++
Sbjct: 138 LKLRQA--LLEL-------RPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFW 186
Query: 164 ISFDEFCKALERTDVEQKMSIRF 186
++ ++ QK+ +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQI 209
Score = 35.2 bits (80), Expect = 0.011
Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 67/200 (33%)
Query: 15 AQIQEETVTPNQIERLYSR-----FTSLDRGDCGTLSR-EDFLRIPE--LAINPLGDRIV 66
+ I+ E P+ + R+Y + +SR + +L++ + L + P + ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 67 HVFFEEGCSDRVNFRQFM-----QVLARFRPIKKSKENKLNSREQKLKFAFKMY--DLDN 119
G + +A + S + + K FK++ +L N
Sbjct: 156 D-----G----------VLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 120 DDAISRDELLAV---LHMMVGANISEEQLTSIAERTILEADQNGDQMI------------ 164
+ S + +L + L + N + S + + + Q + +
Sbjct: 192 CN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 165 -----------SFDEFCKAL 173
+F+ CK L
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL 269
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 37.9 bits (88), Expect = 3e-04
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 108 LKFAFKMY---DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 164
L F Y + IS+ +L + +S+ A++ I D N D I
Sbjct: 13 LVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRI 72
Query: 165 SFDEFCKAL 173
SFDE+ +
Sbjct: 73 SFDEYWTLI 81
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 37.5 bits (87), Expect = 3e-04
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F Y D +++ EL +L + + + + + ++ + D N D +
Sbjct: 15 MVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVD 74
Query: 166 FDEFCKAL 173
F E+C L
Sbjct: 75 FQEYCVFL 82
Score = 26.8 bits (59), Expect = 2.5
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD L++ + +P + S+R V+F+++ L
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
Query: 88 AR 89
+
Sbjct: 83 SS 84
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 37.5 bits (87), Expect = 5e-04
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
+ E++ K F I+ D+ + + + L I AD N
Sbjct: 28 TVEERAKHDQQFHSLK-PISGFITGDQARNFFFQ---SGLPQPVLAQI----WALADMNN 79
Query: 161 DQMISFDEFCKAL 173
D + EF A+
Sbjct: 80 DGRMDQVEFSIAM 92
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 38.8 bits (91), Expect = 5e-04
Identities = 6/66 (9%), Positives = 10/66 (15%), Gaps = 8/66 (12%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
+ D I+ + + A S D
Sbjct: 380 VHTTILNPHIHLMGDESACIAYIR----ITQYLDAGGIPRTAQSE----ETRVWHRRDGK 431
Query: 164 ISFDEF 169
F
Sbjct: 432 WQIVHF 437
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 36.7 bits (85), Expect = 7e-04
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
++ + N + + A L + + + L I + AD +G ++S EF
Sbjct: 17 YRQVEAGNTGRVLALDAAAFL---KKSGLPDLILGKIWD----LADTDGKGVLSKQEFFV 69
Query: 172 AL 173
AL
Sbjct: 70 AL 71
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 36.3 bits (84), Expect = 8e-04
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
L F Y + + + EL +++ + + E + + ++ + D NGD
Sbjct: 11 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECD 70
Query: 166 FDEFCKAL 173
F EF +
Sbjct: 71 FQEFMAFV 78
Score = 25.9 bits (57), Expect = 3.6
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD L + + + +V E S+ +F++FM +
Sbjct: 19 SGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFV 78
Query: 88 AR 89
A
Sbjct: 79 AM 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 96/270 (35%)
Query: 2 GNRSSLL--LRE-------------EEIAQ-IQEETVTPNQIERLYSRFTSLDRG----D 41
GN LR+ + A+ + E T E+++++ L+ +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLEN 221
Query: 42 CGTLSREDFLRIPELAINPLGDRI-----VH--VFFEEGCSDRVNFRQFMQ--------- 85
+D+L ++ PL I H V + R +++
Sbjct: 222 PSNTPDKDYLLSIPISC-PL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 86 VLARFRPIKKSKENKLNSREQKLKFAFKM----------YDLD---NDDAISRDE----- 127
V A S E+ S + + F + L +D++ +E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 128 LLAVLHMMVGANISEEQLTSIAERT--ILEADQ-------NG-DQMI------SFDEFCK 171
+L++ +N+++EQ+ +T L A + NG ++ S
Sbjct: 338 MLSI------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 172 ALER----TDVEQ----------KMSIRFL 187
L + + ++Q K S RFL
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 33.1 bits (75), Expect = 0.058
Identities = 38/251 (15%), Positives = 68/251 (27%), Gaps = 98/251 (39%)
Query: 30 LYSRFTS----LDRGDCGTLSREDFLRIPELAI-NPLGDRIVHVFFEEGCSDRVN----- 79
LY + +R D F I ++ I NP + +H E+G R N
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF-SILDIVINNP-VNLTIHFGGEKGKRIRENYSAMI 1692
Query: 80 FRQFMQVLARFRPIKKSK------------ENKLNSRE--Q--------------KLKFA 111
F + + I K + L++ + Q K K
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 112 FKMYD-------------------LDNDDAIS--------------RDE-------LLAV 131
+ + + RDE ++A+
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 132 LHMMVGANISEEQLTSIAERT------ILE-ADQN--GDQMI------SFDEFCKALERT 176
V A+ S+E L + ER ++E + N Q + + D L
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL--- 1869
Query: 177 DVEQKMSIRFL 187
+ + I +
Sbjct: 1870 NFIKLQKIDII 1880
Score = 28.9 bits (64), Expect = 1.1
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA-LERT 176
+D+ + EL+ V + + ++ + +L EF LE
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNL--------CLTEFENCYLEGN 99
Query: 177 DV 178
D+
Sbjct: 100 DI 101
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 36.4 bits (84), Expect = 0.001
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F Y + +++ EL +L + + + + + ++ + D N D +
Sbjct: 24 MVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 83
Query: 166 FDEFCKAL 173
F E+C L
Sbjct: 84 FQEYCVFL 91
Score = 26.8 bits (59), Expect = 2.2
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD L++ + +P + S+R V+F+++ L
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
Query: 88 AR 89
+
Sbjct: 92 SC 93
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 37.6 bits (86), Expect = 0.001
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 98 ENKLNSREQKLKFAFKMYDLD-NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 156
E N + + F D D +S EL + ++ + R
Sbjct: 147 EKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI-------PMEHCTTRFFETC 199
Query: 157 DQNGDQMISFDEFCKALERTDVE 179
D + D+ I+ DE+ +
Sbjct: 200 DLDNDKYIALDEWAGCFGIKQKD 222
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F Y D +++ EL +L + + + + + ++ + D N D +
Sbjct: 12 MVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 71
Query: 166 FDEFCKAL 173
F E+C L
Sbjct: 72 FQEYCVFL 79
Score = 26.7 bits (59), Expect = 1.9
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD L++ + +P + S+R V+F+++ L
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
Query: 88 AR 89
+
Sbjct: 80 SC 81
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 35.0 bits (81), Expect = 0.002
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 108 LKFAFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
LK F+ Y D +S++EL ++ + + + + E D+NGD +S
Sbjct: 9 LKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRT---LDDLFQELDKNGDGEVS 65
Query: 166 FDEFCKAL 173
F+EF +
Sbjct: 66 FEEFQVLV 73
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 37.5 bits (86), Expect = 0.002
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 70 FEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELL 129
+E S ++ ++F + + QK + ++ D+D ++ E+
Sbjct: 584 LDEDGSGKLGLKEFYILWTKI---------------QKYQKIYREIDVDRSGTMNSYEMR 628
Query: 130 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
L G + + I R + + +I FD F + L R
Sbjct: 629 KALEEA-GFKLPCQLHQVIVARF-----ADDELIIDFDNFVRCLVR 668
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 35.1 bits (81), Expect = 0.002
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F Y + D +S+ EL +L + I + ++ + D N D+ +
Sbjct: 14 IVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVD 73
Query: 166 FDEFCKAL 173
F EF +
Sbjct: 74 FQEFISLV 81
Score = 27.1 bits (60), Expect = 1.8
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S+ +G TLS+ + + + N ++ F+ +++ V+F++F+ ++
Sbjct: 22 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLV 81
Query: 88 AR 89
A
Sbjct: 82 AI 83
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 35.2 bits (81), Expect = 0.003
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 103 SREQKLKF--AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160
E K K+ F + +S D++ VL + + L + E +D +
Sbjct: 10 KPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNS---KLPVDILGRVWE----LSDIDH 61
Query: 161 DQMISFDEFCKALERTDVEQK 181
D M+ DEF A+ +
Sbjct: 62 DGMLDRDEFAVAMFLVYCALE 82
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
L F+ + N+ IS+ E L ++ + A ++ + +R + + D + D +
Sbjct: 15 LIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLD 74
Query: 166 FDEFCKAL 173
F EF +
Sbjct: 75 FQEFLNLI 82
Score = 25.6 bits (56), Expect = 6.1
Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
+ G+ +S+ +FL + N ++ ++ D ++F++F+ ++
Sbjct: 23 AGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLI 82
Query: 88 AR 89
Sbjct: 83 GG 84
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 33.6 bits (77), Expect = 0.008
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
L F + + +S+ EL +L + + + ++ ++ + E D+NGD +
Sbjct: 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVD 70
Query: 166 FDEFCKAL 173
F EF +
Sbjct: 71 FQEFVVLV 78
Score = 26.7 bits (59), Expect = 2.0
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD LS+++ + V +E + V+F++F+ ++
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78
Query: 88 AR 89
A
Sbjct: 79 AA 80
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 33.3 bits (76), Expect = 0.009
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ +++ EL ++ + + + ++ + + D NGD + F EF +
Sbjct: 23 GSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 35.3 bits (80), Expect = 0.010
Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163
+ + + D + D+ ++ EL L + + + + E D +
Sbjct: 9 LQHWIHSCLRKADKNKDNKMNFKELKDFLKEL-NIQVDDGYA----RKIFRECDHSQTDS 63
Query: 164 ISFDEFCKAL----ERTDVE 179
+ +E +R +++
Sbjct: 64 LEDEEIETFYKMLTQRAEID 83
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 32.9 bits (75), Expect = 0.013
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 108 LKFAFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
L F Y D +S+ EL +L+ + + ++ + E+ + + D N D +
Sbjct: 12 LITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVD 71
Query: 166 FDEFCKAL 173
F+EF +
Sbjct: 72 FNEFVVLV 79
Score = 26.7 bits (59), Expect = 2.1
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 36 SLDRGDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVL 87
S GD LS+ + + + ++ +V + S++ V+F +F+ ++
Sbjct: 20 SGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
Query: 88 AR 89
A
Sbjct: 80 AA 81
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 33.8 bits (77), Expect = 0.016
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 99 NKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILE 155
+L R + F+ + + +L + G IS E L + R
Sbjct: 69 ARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLR---- 123
Query: 156 ADQNGDQMISFDEFCKALER 175
+ +SF L R
Sbjct: 124 -YSDSVGRVSFPSLVCFLMR 142
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 34.4 bits (78), Expect = 0.017
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 21/112 (18%)
Query: 64 RIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAI 123
R + + + ++ +F + R + F+ +DLD ++
Sbjct: 580 RSMVNLMDRDGNGKLGLVEFNILWNRI---------------RNYLTIFRKFDLDKSGSM 624
Query: 124 SRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
S E+ + G + + I R + + +I FD F + L R
Sbjct: 625 SAYEMRMAIEAA-GFKLPCQLHQVIVARF-----ADDELIIDFDNFVRCLVR 670
Score = 32.8 bits (74), Expect = 0.052
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 70 FEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELL 129
+ + ++ F +F + +K + +K ++ D I +EL
Sbjct: 783 MDSDTTGKLGFEEFKYLWNNI---------------KKWQGIYKRFETDRSGTIGSNELP 827
Query: 130 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
G ++++ + I R + + FD F L R
Sbjct: 828 GAFEAA-GFHLNQHIYSMIIRRY-----SDETGNMDFDNFISCLVR 867
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 32.4 bits (74), Expect = 0.017
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
N A+ RD+L +L I ++ + E D N D ++F EF +
Sbjct: 24 GNFHAVYRDDLKKLLETESPQYIRKKGA----DVWFKELDINTDGAVNFQEFLILV 75
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 31.0 bits (70), Expect = 0.076
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ +S+ E+ +LH + + + E+ ++ + D+N DQ + F E+ L
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
Score = 25.9 bits (57), Expect = 3.5
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 40 GDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVLAR 89
GD LS+ + +P + + + + V+F+++ LA
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.4 bits (71), Expect = 0.077
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 105 EQKLKFA--FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQ 162
+ K + F + I+ + + + L I + AD + D
Sbjct: 48 KDKPTYDEIFYTLS-PVNGKITGANAKKEMVK---SKLPNTVLGKIWK----LADVDKDG 99
Query: 163 MISFDEFCKALERTDVEQK 181
++ +EF A V+ +
Sbjct: 100 LLDDEEFALANHLIKVKLE 118
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 30.6 bits (69), Expect = 0.086
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ + + EL +L + E + + D N D + F E+ ++L
Sbjct: 25 DKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
Score = 26.7 bits (59), Expect = 1.9
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 40 GDCGTLSREDFLR-----IPELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVLAR 89
GD L + + + + + F +++ V+F ++++ LA
Sbjct: 24 GDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.11
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 11/35 (31%)
Query: 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
+++L + SL L +D P LAI
Sbjct: 20 QALKKLQA---SL------KLYADD--SAPALAIK 43
Score = 30.7 bits (68), Expect = 0.17
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 16/39 (41%)
Query: 94 KKS-KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAV 131
K++ K KL + K+Y D+ A LA+
Sbjct: 19 KQALK--KLQAS-------LKLYADDSAPA------LAI 42
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 29.9 bits (67), Expect = 0.20
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 112 FKMY--DLDNDDAISRDELLAVLHMMVGANISEEQL-TSIAERTILEADQNGDQMISFDE 168
F Y L + D +++ E ++ + + +E + E + + D N D+ +SF+E
Sbjct: 18 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEE 77
Query: 169 FC 170
F
Sbjct: 78 FI 79
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 31.0 bits (69), Expect = 0.20
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 11 EEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRI----- 65
E +I + ++ Q+ + F DR G + EDF + +G +
Sbjct: 708 ENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDF----RACLISMGYNMGEAEF 763
Query: 66 --VHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSR 104
+ + V F+ F+ ++R + + + S
Sbjct: 764 ARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASF 804
Score = 26.4 bits (57), Expect = 6.9
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ + +F +D + ++ A L M G N+ E + R + D N +++
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISM-GYNMGEAEF----ARIMSIVDPNRMGVVT 779
Query: 166 FDEF 169
F F
Sbjct: 780 FQAF 783
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.8 bits (67), Expect = 0.22
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 108 LKFAFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F + ++S +E ++ + + + + + D N D +
Sbjct: 24 VVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVG---SLDEKMKSLDVNQDSELK 80
Query: 166 FDEFCKAL 173
F+E+ + +
Sbjct: 81 FNEYWRLI 88
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.0 bits (65), Expect = 0.27
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 108 LKFAFKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ F Y + +SR EL ++ + +E + + D+N DQ I
Sbjct: 12 MVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKES---SIDDLMKSLDKNSDQEID 68
Query: 166 FDEFCKAL 173
F E+ L
Sbjct: 69 FKEYSVFL 76
Score = 29.0 bits (65), Expect = 0.28
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 36 SLDRGDCGTLSREDFLRI--PELAINPLGDRIVHVFFEEGCSDR---VNFRQFMQVLAR 89
S G TLSR++ + EL + + + + + + ++F+++ L
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 29.0 bits (65), Expect = 0.31
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+ +S+ EL ++ + + R + + D+N DQ ++F E+ L
Sbjct: 24 GDKHTLSKKELKELIQKELTIGSKLQDAE--IARLMEDLDRNKDQEVNFQEYVTFL 77
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 29.4 bits (65), Expect = 0.41
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 79 NFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLD-NDDAISRDELLAVLHMMVG 137
N ++ + + E N + + F D D +S EL + ++
Sbjct: 50 NEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI- 108
Query: 138 ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT--DVEQKMSI 184
+ R D + D+ I+ DE+ D+++ + I
Sbjct: 109 ------PMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 151
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural
genomics, PSI, protein STRU initiative; 1.85A
{Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Length = 170
Score = 29.3 bits (65), Expect = 0.47
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 43 GTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIK 94
G ++ F ++ A+ L + + G V+ ++ + PI
Sbjct: 1 GHMNEYFFPKL--TAVEALAPYRLRTTWSTGEVLEVDVGDILRKIPDLAPIL 50
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 28.2 bits (63), Expect = 0.73
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA--ERTILEADQNGDQMISFDEF 169
F Y DD I + LL ++ +S + D+N D+ I F EF
Sbjct: 16 FHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEF 74
Query: 170 C 170
Sbjct: 75 L 75
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGD--RIV 66
I + + ++ N++ L+ + L + E +R+ + P I+
Sbjct: 209 CNRIVIYRPPKNIISQNELISLWEAKSGLSF-KKVHMPDEQLVRLSQELPQPQNIPVSIL 267
Query: 67 HVFFEEGC 74
H F +G
Sbjct: 268 HSIFVKGD 275
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 27.1 bits (59), Expect = 4.2
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 10 REEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLS---------REDFLRIPELAINP 60
E+A + +T+T I + Y ++D +S + +
Sbjct: 892 DNTEVAYL--KTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDI 949
Query: 61 LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKL 101
+ + E + F++ + + +P KL
Sbjct: 950 NLSQAPALPQPEVIQNMTAFKRGLPLFPLVKPHINFMAAKL 990
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 27.2 bits (59), Expect = 4.2
Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 3/99 (3%)
Query: 74 CSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDD-AISRDELLAVL 132
+ +++ + + + N + K F++ ++ + I + L
Sbjct: 124 AENSSVAKKWSEEVFSYA--YNLLSLNKNQLGEWEKLYFRLTTVEMEKNKIPVKAIQKCL 181
Query: 133 HMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
+ + D + FD F K
Sbjct: 182 SKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFK 220
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 27.0 bits (60), Expect = 4.8
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 142 EEQLTSIAERTILEADQNGDQMISFDEF 169
++S E + +A+ M SF++F
Sbjct: 535 MGWISSFYEAAVKQAEFKNVAMPSFEDF 562
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 26.2 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLK 109
V ++F+ VLA++ P + +N L+S + LK
Sbjct: 42 LVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLK 74
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI,
histidine kinase inhibi bacillus subtilis, transferase
inhibitor; NMR {Bacillus subtilis}
Length = 101
Score = 25.1 bits (55), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 52 RIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97
I LGD + + F E +++VN V A I++
Sbjct: 3 MTVRYQIEQLGDSAMMIRFGEEINEQVNGI----VHAAAAYIEEQP 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.374
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,825,326
Number of extensions: 165090
Number of successful extensions: 1088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 297
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)