Query psy17264
Match_columns 75
No_of_seqs 123 out of 1078
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 17:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034|consensus 99.6 1E-14 2.3E-19 81.9 7.0 73 1-73 112-187 (187)
2 PF13499 EF-hand_7: EF-hand do 99.6 3.4E-14 7.4E-19 67.7 6.3 58 2-60 9-66 (66)
3 cd05022 S-100A13 S-100A13: S-1 99.5 2.3E-13 4.9E-18 68.6 5.2 59 1-63 16-76 (89)
4 COG5126 FRQ1 Ca2+-binding prot 99.4 1.9E-12 4E-17 71.1 6.3 58 1-63 100-157 (160)
5 cd05027 S-100B S-100B: S-100B 99.4 3E-12 6.6E-17 64.4 6.5 59 1-63 16-80 (88)
6 PF13833 EF-hand_8: EF-hand do 99.4 2.8E-12 6.1E-17 58.9 6.0 51 6-61 1-52 (54)
7 KOG0027|consensus 99.4 2.3E-12 5E-17 70.3 6.5 57 1-62 93-149 (151)
8 cd05029 S-100A6 S-100A6: S-100 99.3 2.3E-11 4.9E-16 61.2 6.1 58 2-63 19-80 (88)
9 KOG0027|consensus 99.3 2.9E-11 6.4E-16 65.9 6.4 59 1-64 16-74 (151)
10 cd05031 S-100A10_like S-100A10 99.2 3.3E-11 7.3E-16 61.1 5.7 58 2-63 17-80 (94)
11 cd05026 S-100Z S-100Z: S-100Z 99.2 5.6E-11 1.2E-15 60.3 6.4 58 2-63 19-82 (93)
12 cd00052 EH Eps15 homology doma 99.2 1.3E-10 2.9E-15 55.1 6.5 54 2-62 8-61 (67)
13 cd05025 S-100A1 S-100A1: S-100 99.2 8.5E-11 1.8E-15 59.4 6.0 59 1-63 17-81 (92)
14 PF14658 EF-hand_9: EF-hand do 99.2 3.4E-10 7.5E-15 53.8 6.5 57 1-62 6-64 (66)
15 cd00213 S-100 S-100: S-100 dom 99.2 1.8E-10 4E-15 57.6 5.6 58 2-63 17-80 (88)
16 smart00027 EH Eps15 homology d 99.1 3.1E-10 6.8E-15 57.7 6.2 55 1-62 18-72 (96)
17 cd05023 S-100A11 S-100A11: S-1 99.1 3.7E-10 8E-15 56.9 6.1 58 2-63 19-81 (89)
18 cd00051 EFh EF-hand, calcium b 99.1 8.9E-10 1.9E-14 50.7 6.7 54 2-60 9-62 (63)
19 KOG0038|consensus 99.1 8.2E-10 1.8E-14 59.9 7.0 63 1-63 116-178 (189)
20 KOG0044|consensus 99.1 5.5E-10 1.2E-14 63.1 5.6 63 1-63 108-176 (193)
21 COG5126 FRQ1 Ca2+-binding prot 99.1 9.4E-10 2E-14 60.5 6.3 57 1-63 28-84 (160)
22 KOG0028|consensus 99.0 2E-09 4.3E-14 59.0 6.9 58 1-63 114-171 (172)
23 cd05030 calgranulins Calgranul 99.0 1.4E-09 3E-14 54.6 5.6 54 6-63 23-80 (88)
24 PTZ00183 centrin; Provisional 99.0 2.6E-09 5.6E-14 57.9 7.0 57 2-63 99-155 (158)
25 PTZ00184 calmodulin; Provision 99.0 2.6E-09 5.7E-14 57.3 6.6 56 1-61 92-147 (149)
26 KOG0028|consensus 99.0 3.5E-09 7.6E-14 58.0 5.7 57 1-62 41-97 (172)
27 PTZ00184 calmodulin; Provision 98.9 8.5E-09 1.8E-13 55.3 6.6 56 2-62 20-75 (149)
28 PTZ00183 centrin; Provisional 98.9 1.3E-08 2.9E-13 55.2 6.9 56 2-62 26-81 (158)
29 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.1E-08 2.4E-13 53.8 6.1 53 2-63 57-109 (116)
30 KOG0030|consensus 98.8 1.4E-08 3E-13 54.6 5.3 55 1-61 96-150 (152)
31 KOG0037|consensus 98.8 3.6E-08 7.8E-13 56.4 6.5 56 2-62 133-188 (221)
32 cd05024 S-100A10 S-100A10: A s 98.7 1.7E-07 3.8E-12 47.3 6.7 54 6-63 20-77 (91)
33 KOG0031|consensus 98.7 2E-07 4.3E-12 51.0 6.4 57 1-62 109-165 (171)
34 PF00036 EF-hand_1: EF hand; 98.7 4.9E-08 1.1E-12 39.5 3.1 25 38-62 4-28 (29)
35 KOG0041|consensus 98.6 1.2E-07 2.5E-12 54.0 5.2 57 2-63 108-164 (244)
36 PLN02964 phosphatidylserine de 98.6 1.7E-07 3.7E-12 61.0 6.6 57 2-63 188-244 (644)
37 KOG0030|consensus 98.5 2E-07 4.4E-12 50.2 4.0 58 1-63 19-78 (152)
38 KOG0031|consensus 98.5 1.3E-06 2.9E-11 47.9 6.8 61 1-62 40-129 (171)
39 KOG0044|consensus 98.5 4E-07 8.6E-12 51.7 4.9 56 2-62 73-128 (193)
40 KOG0377|consensus 98.3 2.6E-06 5.6E-11 53.6 6.3 56 2-61 556-614 (631)
41 PF14788 EF-hand_10: EF hand; 98.3 4E-06 8.7E-11 38.0 5.3 47 10-61 2-48 (51)
42 KOG0036|consensus 98.3 1.1E-06 2.5E-11 54.5 4.5 61 2-67 23-84 (463)
43 KOG4065|consensus 98.3 5.3E-06 1.1E-10 43.6 6.1 59 1-59 75-142 (144)
44 PF13202 EF-hand_5: EF hand; P 98.2 2.8E-06 6E-11 33.1 3.2 23 38-60 3-25 (25)
45 KOG0037|consensus 98.2 6.1E-06 1.3E-10 47.4 5.8 56 2-61 66-121 (221)
46 PF00036 EF-hand_1: EF hand; 98.2 9.4E-07 2E-11 35.7 1.8 20 2-21 9-28 (29)
47 PLN02964 phosphatidylserine de 98.2 8.2E-06 1.8E-10 53.4 6.0 57 1-63 151-208 (644)
48 KOG0036|consensus 98.1 9.9E-06 2.1E-10 50.5 5.8 56 2-62 91-146 (463)
49 PF12763 EF-hand_4: Cytoskelet 98.0 3.5E-05 7.5E-10 39.9 5.8 50 5-61 21-70 (104)
50 PRK12309 transaldolase/EF-hand 98.0 1.4E-05 3E-10 49.8 5.0 44 1-62 342-385 (391)
51 KOG0040|consensus 98.0 1.8E-05 3.9E-10 55.8 5.3 60 1-65 2261-2327(2399)
52 PF13405 EF-hand_6: EF-hand do 97.9 3.7E-05 8E-10 31.2 3.3 24 38-61 4-27 (31)
53 KOG0034|consensus 97.8 8.4E-05 1.8E-09 42.2 5.4 57 2-63 75-133 (187)
54 PF13405 EF-hand_6: EF-hand do 97.8 1.5E-05 3.3E-10 32.4 1.8 21 2-22 9-30 (31)
55 KOG4223|consensus 97.6 0.00016 3.5E-09 43.8 4.2 57 3-63 173-229 (325)
56 KOG0046|consensus 97.5 0.00052 1.1E-08 44.3 5.7 53 5-62 30-85 (627)
57 PF10591 SPARC_Ca_bdg: Secrete 97.5 1.9E-05 4.2E-10 41.4 -0.6 50 2-58 63-112 (113)
58 smart00054 EFh EF-hand, calciu 97.4 0.00039 8.4E-09 26.4 3.2 25 38-62 4-28 (29)
59 PF13202 EF-hand_5: EF hand; P 97.4 0.00012 2.6E-09 28.4 1.6 18 2-19 8-25 (25)
60 KOG2243|consensus 97.4 0.00054 1.2E-08 49.0 5.1 62 2-69 4066-4127(5019)
61 KOG4223|consensus 97.3 0.00029 6.4E-09 42.8 2.7 53 2-59 250-302 (325)
62 KOG2643|consensus 97.1 0.00024 5.3E-09 44.8 1.1 52 7-62 402-453 (489)
63 KOG3866|consensus 97.0 0.0027 5.8E-08 38.9 5.1 63 1-63 252-325 (442)
64 PF13499 EF-hand_7: EF-hand do 97.0 0.0016 3.4E-08 30.4 3.2 27 38-64 4-30 (66)
65 KOG0377|consensus 96.7 0.011 2.5E-07 37.9 6.4 60 2-61 473-574 (631)
66 PF05042 Caleosin: Caleosin re 96.6 0.023 5E-07 32.0 6.5 61 2-63 16-125 (174)
67 KOG4251|consensus 96.4 0.0022 4.7E-08 38.2 1.8 54 3-61 111-167 (362)
68 KOG2643|consensus 96.4 0.0023 5E-08 40.6 1.8 52 2-60 208-259 (489)
69 PF13833 EF-hand_8: EF-hand do 96.3 0.0043 9.3E-08 27.9 2.0 20 2-21 34-53 (54)
70 KOG0751|consensus 96.2 0.023 5.1E-07 37.0 5.7 59 3-68 84-142 (694)
71 KOG2562|consensus 96.1 0.0097 2.1E-07 38.1 3.5 58 2-63 287-344 (493)
72 KOG4578|consensus 95.8 0.012 2.6E-07 36.4 2.9 58 1-62 341-398 (421)
73 smart00027 EH Eps15 homology d 95.7 0.05 1.1E-06 27.4 4.5 28 37-64 13-40 (96)
74 cd00051 EFh EF-hand, calcium b 95.6 0.03 6.5E-07 24.8 3.3 26 38-63 4-29 (63)
75 cd00052 EH Eps15 homology doma 95.4 0.033 7.2E-07 25.7 3.2 26 39-64 4-29 (67)
76 KOG1955|consensus 95.3 0.056 1.2E-06 35.3 4.8 51 4-61 242-292 (737)
77 PF09279 EF-hand_like: Phospho 95.3 0.12 2.5E-06 25.3 5.0 58 6-63 12-70 (83)
78 KOG0042|consensus 95.0 0.043 9.4E-07 36.3 3.7 57 2-63 602-658 (680)
79 KOG4666|consensus 94.6 0.04 8.8E-07 34.1 2.6 24 40-63 337-360 (412)
80 KOG0038|consensus 94.5 0.049 1.1E-06 30.2 2.6 57 2-62 80-136 (189)
81 KOG4251|consensus 94.4 0.067 1.5E-06 32.1 3.3 53 2-59 290-342 (362)
82 cd00213 S-100 S-100: S-100 dom 94.2 0.11 2.4E-06 25.6 3.4 26 37-62 11-38 (88)
83 PRK12309 transaldolase/EF-hand 94.0 0.13 2.9E-06 32.5 4.1 22 36-57 336-357 (391)
84 KOG1029|consensus 93.9 0.11 2.4E-06 35.7 3.7 53 2-61 204-256 (1118)
85 cd05026 S-100Z S-100Z: S-100Z 93.5 0.11 2.3E-06 26.2 2.6 21 2-22 62-82 (93)
86 PF08976 DUF1880: Domain of un 93.5 0.081 1.8E-06 28.0 2.2 31 27-61 4-34 (118)
87 cd05022 S-100A13 S-100A13: S-1 93.4 0.18 4E-06 25.3 3.3 24 39-62 13-37 (89)
88 KOG2562|consensus 93.4 0.4 8.6E-06 31.1 5.4 55 2-59 360-421 (493)
89 cd05025 S-100A1 S-100A1: S-100 93.2 0.32 6.9E-06 24.2 4.1 25 38-62 13-39 (92)
90 KOG4666|consensus 93.0 0.4 8.6E-06 30.0 4.8 58 1-62 267-324 (412)
91 cd00252 SPARC_EC SPARC_EC; ext 93.0 0.3 6.6E-06 25.8 3.9 25 36-60 50-74 (116)
92 cd05027 S-100B S-100B: S-100B 92.7 0.22 4.8E-06 24.9 3.0 24 39-62 13-38 (88)
93 cd05031 S-100A10_like S-100A10 92.6 0.27 5.8E-06 24.6 3.3 24 39-62 13-38 (94)
94 cd05023 S-100A11 S-100A11: S-1 92.5 0.21 4.5E-06 25.0 2.8 21 2-22 61-81 (89)
95 KOG0041|consensus 92.4 0.25 5.4E-06 28.8 3.3 30 36-65 101-130 (244)
96 cd05030 calgranulins Calgranul 91.0 0.36 7.8E-06 24.0 2.7 21 2-22 60-80 (88)
97 KOG0751|consensus 90.2 1.1 2.3E-05 29.8 4.8 52 4-59 47-99 (694)
98 KOG1029|consensus 87.4 2.3 5E-05 29.8 5.0 50 5-61 27-76 (1118)
99 PF05517 p25-alpha: p25-alpha 86.9 3.7 7.9E-05 22.7 5.6 54 5-62 14-69 (154)
100 KOG0035|consensus 85.8 2.9 6.3E-05 29.5 4.9 60 3-63 757-817 (890)
101 KOG0169|consensus 84.8 2.4 5.1E-05 29.3 4.1 56 2-62 145-200 (746)
102 KOG0040|consensus 84.5 2.7 6E-05 31.7 4.5 42 26-68 2246-2287(2399)
103 cd07313 terB_like_2 tellurium 84.1 3.6 7.8E-05 20.7 4.0 53 6-62 12-65 (104)
104 PF00404 Dockerin_1: Dockerin 81.6 2.1 4.6E-05 15.7 2.7 17 3-19 1-17 (21)
105 KOG3555|consensus 81.6 3.7 8E-05 26.1 3.8 53 2-63 259-311 (434)
106 PF07879 PHB_acc_N: PHB/PHA ac 81.4 1.9 4.2E-05 20.4 2.1 21 1-21 11-31 (64)
107 PF12174 RST: RCD1-SRO-TAF4 (R 80.7 5 0.00011 19.3 3.7 48 8-63 7-54 (70)
108 KOG1707|consensus 80.4 16 0.00034 25.0 6.9 27 36-62 317-343 (625)
109 PLN02952 phosphoinositide phos 80.0 13 0.00028 25.3 6.1 53 5-63 12-66 (599)
110 KOG1954|consensus 79.7 4.6 0.0001 26.2 3.8 46 7-59 457-502 (532)
111 PF03672 UPF0154: Uncharacteri 78.7 5.7 0.00012 18.9 4.1 28 7-35 29-56 (64)
112 PF02761 Cbl_N2: CBL proto-onc 78.5 6.8 0.00015 19.7 5.0 48 8-60 21-68 (85)
113 PF01885 PTS_2-RNA: RNA 2'-pho 77.9 6.5 0.00014 22.5 3.9 31 4-35 27-57 (186)
114 PRK00523 hypothetical protein; 77.8 6.6 0.00014 19.1 4.0 28 7-35 37-64 (72)
115 PF02864 STAT_bind: STAT prote 77.7 6.4 0.00014 23.8 3.9 52 8-59 177-232 (254)
116 KOG1707|consensus 76.3 3.4 7.5E-05 27.9 2.7 49 2-61 324-376 (625)
117 TIGR01848 PHA_reg_PhaR polyhyd 75.6 9.7 0.00021 20.0 5.0 59 1-61 11-76 (107)
118 PF09336 Vps4_C: Vps4 C termin 75.4 4.5 9.7E-05 18.9 2.4 25 9-34 29-53 (62)
119 TIGR01639 P_fal_TIGR01639 Plas 73.1 8.2 0.00018 17.9 4.5 33 8-41 8-40 (61)
120 TIGR03573 WbuX N-acetyl sugar 72.7 20 0.00043 22.4 5.3 43 7-60 300-342 (343)
121 PRK01844 hypothetical protein; 70.9 11 0.00023 18.4 4.0 26 9-35 38-63 (72)
122 PF08461 HTH_12: Ribonuclease 70.8 9.9 0.00021 17.9 3.0 37 6-47 10-46 (66)
123 PRK00819 RNA 2'-phosphotransfe 70.6 18 0.00038 20.7 4.6 31 4-35 28-58 (179)
124 COG5562 Phage envelope protein 69.7 4.5 9.7E-05 22.1 1.8 26 40-65 78-103 (137)
125 KOG2871|consensus 68.5 3.9 8.5E-05 26.2 1.6 56 2-61 318-373 (449)
126 PF09068 EF-hand_2: EF hand; 67.4 17 0.00038 19.5 6.3 54 7-60 57-123 (127)
127 TIGR00988 hip integration host 66.0 12 0.00027 18.6 2.9 48 11-59 2-51 (94)
128 PF09373 PMBR: Pseudomurein-bi 66.0 8.8 0.00019 15.5 2.1 15 7-21 2-16 (33)
129 COG3763 Uncharacterized protei 65.4 15 0.00032 17.8 4.2 28 7-35 36-63 (71)
130 PLN02863 UDP-glucoronosyl/UDP- 63.2 32 0.0007 22.6 5.0 57 8-67 416-476 (477)
131 PF04282 DUF438: Family of unk 63.0 17 0.00036 17.6 3.8 23 11-34 14-36 (71)
132 COG4103 Uncharacterized protei 63.0 22 0.00048 19.7 3.7 52 6-63 41-95 (148)
133 PF03979 Sigma70_r1_1: Sigma-7 59.9 15 0.00032 18.0 2.5 31 7-44 19-49 (82)
134 PLN02554 UDP-glycosyltransfera 59.6 33 0.00072 22.5 4.6 56 7-62 422-478 (481)
135 KOG4347|consensus 59.4 13 0.00029 25.5 2.8 48 2-55 564-611 (671)
136 KOG4347|consensus 59.3 19 0.0004 24.9 3.5 28 34-61 555-582 (671)
137 PLN03007 UDP-glucosyltransfera 57.8 49 0.0011 21.7 5.2 55 7-61 422-479 (482)
138 PF05099 TerB: Tellurite resis 57.6 7.2 0.00016 20.6 1.3 51 7-61 37-88 (140)
139 PLN02210 UDP-glucosyl transfer 56.1 55 0.0012 21.4 5.7 53 7-60 397-453 (456)
140 TIGR02675 tape_meas_nterm tape 56.1 23 0.0005 17.1 3.2 15 7-21 28-42 (75)
141 PTZ00056 glutathione peroxidas 55.6 31 0.00066 19.8 3.7 32 8-47 163-194 (199)
142 TIGR00987 himA integration hos 54.9 17 0.00037 18.2 2.3 48 10-59 2-51 (96)
143 PLN02764 glycosyltransferase f 52.9 64 0.0014 21.2 5.3 56 8-63 390-446 (453)
144 PLN02167 UDP-glycosyltransfera 52.4 65 0.0014 21.2 5.3 55 8-62 417-472 (475)
145 PLN02207 UDP-glycosyltransfera 52.3 50 0.0011 21.8 4.5 54 7-62 408-465 (468)
146 PLN02208 glycosyltransferase f 49.4 72 0.0016 20.8 5.9 54 7-60 383-437 (442)
147 cd07316 terB_like_DjlA N-termi 48.9 35 0.00075 17.0 5.3 53 6-62 12-64 (106)
148 PF07308 DUF1456: Protein of u 48.7 31 0.00068 16.4 5.0 45 10-59 14-58 (68)
149 KOG0506|consensus 48.5 84 0.0018 21.3 5.3 55 7-62 100-158 (622)
150 KOG3442|consensus 48.3 45 0.00098 18.1 4.3 44 6-51 52-95 (132)
151 PF13829 DUF4191: Domain of un 47.9 60 0.0013 19.4 4.4 31 4-35 162-192 (224)
152 PRK14981 DNA-directed RNA poly 47.9 41 0.0009 17.6 4.6 23 12-35 81-103 (112)
153 PRK10753 transcriptional regul 47.9 27 0.00058 17.4 2.3 46 11-58 2-49 (90)
154 KOG4004|consensus 47.4 13 0.00029 21.9 1.3 25 37-61 225-249 (259)
155 KOG4301|consensus 46.9 20 0.00043 22.9 2.1 54 2-61 119-172 (434)
156 PF06226 DUF1007: Protein of u 46.8 21 0.00047 20.7 2.1 20 2-21 59-78 (212)
157 PF08726 EFhand_Ca_insen: Ca2+ 46.3 30 0.00065 16.6 2.3 12 11-22 4-15 (69)
158 PF13592 HTH_33: Winged helix- 45.5 32 0.00069 15.6 4.0 34 7-44 2-35 (60)
159 KOG0998|consensus 43.9 7.4 0.00016 27.4 -0.1 53 3-62 293-345 (847)
160 PRK09430 djlA Dna-J like membr 43.9 74 0.0016 19.3 5.2 52 6-62 68-120 (267)
161 smart00549 TAFH TAF homology. 42.0 44 0.00095 17.1 2.5 16 7-22 37-52 (92)
162 PF09873 DUF2100: Uncharacteri 40.9 78 0.0017 18.8 4.9 18 6-23 38-55 (215)
163 PF11116 DUF2624: Protein of u 40.4 52 0.0011 16.6 6.1 47 8-59 13-59 (85)
164 PF08479 POTRA_2: POTRA domain 40.4 33 0.00072 16.2 2.0 38 5-42 9-46 (76)
165 PF10437 Lip_prot_lig_C: Bacte 39.7 49 0.0011 16.1 4.0 42 12-60 44-86 (86)
166 PF07128 DUF1380: Protein of u 39.1 70 0.0015 17.7 3.5 31 10-45 27-57 (139)
167 TIGR02613 mob_myst_B mobile my 36.0 86 0.0019 17.8 3.8 18 4-21 126-143 (186)
168 PF09066 B2-adapt-app_C: Beta2 35.8 48 0.001 17.0 2.3 18 48-65 4-21 (114)
169 PF09851 SHOCT: Short C-termin 35.7 36 0.00078 13.4 2.4 12 7-18 14-25 (31)
170 PLN02448 UDP-glycosyltransfera 35.5 1.3E+02 0.0028 19.7 5.4 55 7-61 397-456 (459)
171 PF15652 Tox-SHH: HNH/Endo VII 35.3 70 0.0015 16.6 4.2 31 11-41 67-97 (100)
172 PF14178 YppF: YppF-like prote 35.0 54 0.0012 15.4 2.1 16 7-22 34-49 (60)
173 PF12486 DUF3702: ImpA domain 34.8 26 0.00057 19.5 1.2 19 3-21 79-97 (148)
174 PF10357 Kin17_mid: Domain of 34.6 56 0.0012 17.7 2.4 29 46-74 57-91 (127)
175 PF14684 Tricorn_C1: Tricorn p 34.5 57 0.0012 15.4 3.2 37 10-46 27-63 (70)
176 PF05383 La: La domain; Inter 34.4 34 0.00073 15.9 1.4 20 40-59 21-40 (61)
177 KOG3449|consensus 33.7 80 0.0017 16.8 3.5 35 4-43 12-46 (112)
178 PF04558 tRNA_synt_1c_R1: Glut 33.4 60 0.0013 18.3 2.5 32 9-42 101-132 (164)
179 PTZ00315 2'-phosphotransferase 33.4 1.4E+02 0.0031 20.6 4.5 31 4-35 400-430 (582)
180 PLN02228 Phosphoinositide phos 33.0 1.6E+02 0.0036 20.2 6.3 52 7-63 36-93 (567)
181 PLN02222 phosphoinositide phos 32.7 1.7E+02 0.0037 20.2 5.8 52 7-63 37-91 (581)
182 PLN02534 UDP-glycosyltransfera 32.0 1.5E+02 0.0033 19.8 4.4 54 9-62 428-486 (491)
183 PF09069 EF-hand_3: EF-hand; 32.0 77 0.0017 16.1 6.1 54 4-63 13-76 (90)
184 PF09107 SelB-wing_3: Elongati 31.5 55 0.0012 14.6 1.8 15 6-20 7-21 (50)
185 PF10256 Erf4: Golgin subfamil 31.4 60 0.0013 16.8 2.2 16 7-22 27-42 (118)
186 PF03986 Autophagy_N: Autophag 31.3 36 0.00077 18.9 1.3 16 7-22 25-40 (145)
187 PRK13210 putative L-xylulose 5 31.0 67 0.0014 19.0 2.6 25 47-71 229-253 (284)
188 PF04876 Tenui_NCP: Tenuivirus 30.7 1.1E+02 0.0023 17.3 6.0 53 6-61 96-159 (175)
189 PF09693 Phage_XkdX: Phage unc 30.4 44 0.00096 14.0 1.3 13 7-19 24-36 (40)
190 TIGR01201 HU_rel DNA-binding p 30.2 1E+02 0.0022 16.9 4.6 35 7-43 28-62 (145)
191 PF12091 DUF3567: Protein of u 30.2 83 0.0018 15.9 3.5 24 12-35 47-70 (85)
192 PLN02410 UDP-glucoronosyl/UDP- 30.2 1.6E+02 0.0036 19.3 5.3 53 8-61 393-449 (451)
193 PF14237 DUF4339: Domain of un 30.2 48 0.001 14.0 1.5 17 5-21 9-25 (45)
194 PF08355 EF_assoc_1: EF hand a 29.7 61 0.0013 15.8 1.9 19 43-61 11-29 (76)
195 cd00952 CHBPH_aldolase Trans-o 29.4 1.4E+02 0.0031 18.4 5.7 39 6-44 22-75 (309)
196 PF13075 DUF3939: Protein of u 29.1 28 0.0006 19.2 0.7 46 9-63 9-54 (140)
197 PF14337 DUF4393: Domain of un 29.1 1.1E+02 0.0024 17.1 3.5 47 15-63 19-66 (186)
198 KOG2243|consensus 28.5 53 0.0012 25.9 2.1 25 39-63 4062-4086(5019)
199 PF07531 TAFH: NHR1 homology t 28.4 88 0.0019 16.1 2.4 15 7-21 38-52 (96)
200 PF07492 Trehalase_Ca-bi: Neut 28.2 13 0.00028 14.9 -0.5 16 39-54 4-19 (30)
201 PF14513 DAG_kinase_N: Diacylg 28.2 1.1E+02 0.0024 16.8 3.2 36 7-46 46-81 (138)
202 PLN02230 phosphoinositide phos 27.8 2.1E+02 0.0046 19.9 6.9 57 6-63 41-103 (598)
203 cd06396 PB1_NBR1 The PB1 domai 27.7 90 0.002 15.5 3.1 54 7-70 19-77 (81)
204 PHA02105 hypothetical protein 27.3 80 0.0017 14.8 3.1 49 9-61 4-56 (68)
205 PLN02952 phosphoinositide phos 27.3 2.2E+02 0.0047 19.8 7.3 57 6-63 50-111 (599)
206 PF07166 DUF1398: Protein of u 27.2 55 0.0012 17.7 1.6 21 47-67 80-100 (125)
207 COG1104 NifS Cysteine sulfinat 27.0 36 0.00079 22.0 1.0 20 2-21 121-140 (386)
208 PF06919 Phage_T4_Gp30_7: Phag 27.0 1.1E+02 0.0023 16.2 4.5 31 14-44 90-120 (121)
209 PF09832 DUF2059: Uncharacteri 26.7 76 0.0017 14.4 2.3 24 12-35 2-25 (64)
210 PLN02562 UDP-glycosyltransfera 26.6 1.9E+02 0.0042 18.9 4.3 50 10-60 398-447 (448)
211 PF08006 DUF1700: Protein of u 26.6 1.3E+02 0.0028 16.9 5.0 33 11-44 2-34 (181)
212 PF02269 TFIID-18kDa: Transcri 26.4 49 0.0011 16.7 1.3 22 44-65 48-69 (93)
213 PF03874 RNA_pol_Rpb4: RNA pol 25.8 1.1E+02 0.0023 15.8 2.7 24 12-35 56-79 (117)
214 PF12419 DUF3670: SNF2 Helicas 25.8 1.2E+02 0.0026 16.4 5.3 50 6-59 80-138 (141)
215 PF13623 SurA_N_2: SurA N-term 25.8 1.3E+02 0.0027 16.6 4.3 10 51-60 106-115 (145)
216 PF08044 DUF1707: Domain of un 25.8 79 0.0017 14.2 3.4 15 47-61 20-34 (53)
217 PF05402 PqqD: Coenzyme PQQ sy 25.7 81 0.0018 14.3 4.3 9 13-21 16-24 (68)
218 COG1460 Uncharacterized protei 25.5 1.2E+02 0.0026 16.2 4.6 27 11-38 81-107 (114)
219 PF04963 Sigma54_CBD: Sigma-54 25.3 1.4E+02 0.0031 17.0 4.2 51 4-59 45-95 (194)
220 PF10440 WIYLD: Ubiquitin-bind 25.2 93 0.002 14.8 4.6 34 13-46 9-42 (65)
221 PLN02152 indole-3-acetate beta 25.1 2.1E+02 0.0046 18.9 5.5 52 6-59 398-453 (455)
222 cd06408 PB1_NoxR The PB1 domai 25.0 85 0.0018 15.8 1.9 25 50-74 21-46 (86)
223 PF12872 OST-HTH: OST-HTH/LOTU 24.9 87 0.0019 14.4 4.6 36 27-62 24-59 (74)
224 PF09454 Vps23_core: Vps23 cor 24.7 82 0.0018 14.8 1.8 16 48-63 37-52 (65)
225 PF05157 T2SE_Nter: Type II se 24.3 98 0.0021 15.2 2.2 21 7-27 4-24 (109)
226 KOG0998|consensus 24.2 48 0.001 23.7 1.3 54 2-62 20-73 (847)
227 PTZ00373 60S Acidic ribosomal 24.1 1.3E+02 0.0028 16.0 4.6 33 6-43 16-48 (112)
228 COG3426 Butyrate kinase [Energ 23.7 1.7E+02 0.0036 18.7 3.3 30 2-34 211-240 (358)
229 PF00427 PBS_linker_poly: Phyc 23.7 1.4E+02 0.003 16.3 4.4 16 48-63 42-57 (131)
230 PLN03015 UDP-glucosyl transfer 23.7 2.3E+02 0.005 18.9 4.3 55 6-60 407-466 (470)
231 PRK13209 L-xylulose 5-phosphat 23.6 1.2E+02 0.0025 18.1 2.7 24 47-70 228-251 (283)
232 TIGR03380 agmatine_aguA agmati 23.3 1.4E+02 0.0031 19.1 3.1 23 2-24 169-191 (357)
233 cd07176 terB tellurite resista 23.1 56 0.0012 16.3 1.1 16 6-21 15-30 (111)
234 PF02037 SAP: SAP domain; Int 23.0 73 0.0016 12.8 1.9 19 9-28 3-21 (35)
235 TIGR03249 KdgD 5-dehydro-4-deo 22.7 1.9E+02 0.0042 17.6 5.7 40 5-44 18-72 (296)
236 cd07562 Peptidase_S41_TRI Tric 22.4 1.9E+02 0.004 17.3 5.5 44 8-51 23-66 (266)
237 KOG2278|consensus 22.4 1.4E+02 0.003 17.5 2.6 31 4-35 29-59 (207)
238 PF00701 DHDPS: Dihydrodipicol 22.3 1.9E+02 0.0042 17.4 4.7 41 5-45 14-69 (289)
239 PF09912 DUF2141: Uncharacteri 22.2 25 0.00055 18.3 -0.3 13 2-14 61-73 (112)
240 PF06902 Fer4_19: Divergent 4F 22.0 66 0.0014 15.1 1.2 9 2-10 29-37 (64)
241 KOG3332|consensus 21.9 1.1E+02 0.0023 18.6 2.2 22 4-26 78-99 (247)
242 KOG4286|consensus 21.4 77 0.0017 22.7 1.8 41 1-46 478-518 (966)
243 cd00408 DHDPS-like Dihydrodipi 20.8 2E+02 0.0044 17.2 5.7 40 5-44 10-64 (281)
244 PF09967 DUF2201: VWA-like dom 20.7 1.2E+02 0.0026 16.0 2.2 18 4-21 5-22 (126)
245 TIGR00542 hxl6Piso_put hexulos 20.7 1.3E+02 0.0028 17.9 2.5 24 47-70 223-246 (279)
246 PF03477 ATP-cone: ATP cone do 20.6 1.2E+02 0.0027 14.6 2.7 52 10-62 13-67 (90)
247 PF07499 RuvA_C: RuvA, C-termi 20.3 98 0.0021 13.3 4.4 39 13-60 4-42 (47)
248 PF13624 SurA_N_3: SurA N-term 20.3 1.6E+02 0.0034 15.7 3.6 39 24-65 97-135 (154)
249 PHA01632 hypothetical protein 20.2 1.2E+02 0.0025 14.1 2.9 19 24-42 25-43 (64)
250 PRK09856 fructoselysine 3-epim 20.1 1.6E+02 0.0035 17.4 2.8 24 47-70 222-245 (275)
No 1
>KOG0034|consensus
Probab=99.58 E-value=1e-14 Score=81.87 Aligned_cols=73 Identities=55% Similarity=0.896 Sum_probs=65.9
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc-Cccccceeec
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANIS--EEQLTSIAERTILEADQNGDQMISFDEFCKALERT-DVEQKMSIRF 73 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~ 73 (75)
+||.+++|+|+.+++..++..+++...+ ++.+..+++.++..+|.+++|+|+++||.+++.+. ...++|.++|
T Consensus 112 vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 112 VYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCCC
Confidence 5899999999999999999998776666 88899999999999999999999999999999987 7777777654
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.55 E-value=3.4e-14 Score=67.71 Aligned_cols=58 Identities=36% Similarity=0.611 Sum_probs=53.3
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
||.+++|+|+.+||..++..+ +...++++....+..+++.+|.+++|.|+++||..++
T Consensus 9 ~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 9 FDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 799999999999999999995 7777788888888999999999999999999999875
No 3
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=2.3e-13 Score=68.56 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=51.5
Q ss_pred CccC-CCCCccCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDL-DNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~-~~~G~i~~~el~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+||+ +++|+|+..||+.++.+.++..+++ ++++.+ ++.+|.+++|.|+|+||+.++...
T Consensus 16 ~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 16 KASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3788 9999999999999999833777777 777777 999999999999999999998754
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=71.12 Aligned_cols=58 Identities=34% Similarity=0.621 Sum_probs=54.3
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+||.|++|+|+..+|+.+++.+ +...++++++.+ ++.++.+++|.|+|++|.+.+...
T Consensus 100 ~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~l----l~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 100 LFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKL----LKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHH----HHhcCCCCCceEeHHHHHHHHhcc
Confidence 5899999999999999999995 999999999999 999999999999999999988653
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=3e-12 Score=64.38 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=51.5
Q ss_pred Ccc-CCCCC-ccCHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYD-LDNDD-AISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D-~~~~G-~i~~~el~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|| ++++| +|+..+|+.++++ +++...+++++..+ ++.+|.+++|+|+|++|+.++...
T Consensus 16 ~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 16 QYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV----METLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHH
Confidence 366 79999 6999999999998 23778888888888 999999999999999999988643
No 6
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.39 E-value=2.8e-12 Score=58.91 Aligned_cols=51 Identities=37% Similarity=0.644 Sum_probs=46.8
Q ss_pred CCCccCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 6 NDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
++|.|+.++|+.++.. ++.. ++++++..+ +..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHH
Confidence 4799999999999976 4888 999998888 9999999999999999999875
No 7
>KOG0027|consensus
Probab=99.39 E-value=2.3e-12 Score=70.26 Aligned_cols=57 Identities=35% Similarity=0.622 Sum_probs=53.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+||++++|+||..+|+.++..+ +.+.+.+++..+ ++..|.+++|.|+|.+|++++..
T Consensus 93 ~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~m----i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 93 VFDKDGDGFISASELKKVLTSL-GEKLTDEECKEM----IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHH----HHhcCCCCCCeEeHHHHHHHHhc
Confidence 5899999999999999999995 999999998888 99999999999999999999864
No 8
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=2.3e-11 Score=61.21 Aligned_cols=58 Identities=21% Similarity=0.500 Sum_probs=49.4
Q ss_pred ccC-CC-CCccCHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDL-DN-DDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~-~~-~G~i~~~el~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
||. ++ +|+|+.+||+.++++. ++.+++++++.++ ++.+|.+++|+|+|+||+.++...
T Consensus 19 y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 19 YSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHHH
Confidence 344 56 8999999999999741 3788999999988 999999999999999999988653
No 9
>KOG0027|consensus
Probab=99.26 E-value=2.9e-11 Score=65.91 Aligned_cols=59 Identities=42% Similarity=0.662 Sum_probs=55.0
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 64 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 64 (75)
+||.+++|+|+..+|..+++++ +..++..++..+ +...|.+++|.|++.+|+.++.+..
T Consensus 16 ~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~----~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 16 LFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDL----IKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 4799999999999999999995 999999999998 9999999999999999999998653
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.25 E-value=3.3e-11 Score=61.12 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=49.2
Q ss_pred ccC-CC-CCccCHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDL-DN-DDAISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~-~~-~G~i~~~el~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
||. ++ +|+|+..||+.+++..+ +..+++++++.+ ++.+|.+++|.|+|++|+.++...
T Consensus 17 ~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 17 YAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHH
Confidence 675 87 69999999999998622 556788888887 999999999999999999998754
No 11
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=5.6e-11 Score=60.29 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=47.2
Q ss_pred cc-CCCCC-ccCHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YD-LDNDD-AISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D-~~~~G-~i~~~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
|| .|++| +|+..||+.++....+ ...++.++.++ ++.+|.+++|.|+|+||+.++...
T Consensus 19 ~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 19 YSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHHH
Confidence 55 78998 5999999999987322 23466677777 999999999999999999998754
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=1.3e-10 Score=55.08 Aligned_cols=54 Identities=31% Similarity=0.348 Sum_probs=47.7
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+|++++|.|+.+++..++..+ + .+.++++.+ ++.++.+++|.|++++|+.++..
T Consensus 8 ~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGKS-G--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHH
Confidence 689999999999999999984 5 477777777 99999999999999999998764
No 13
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=8.5e-11 Score=59.39 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=48.9
Q ss_pred Ccc-CCCCCc-cCHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYD-LDNDDA-ISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D-~~~~G~-i~~~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|| .+++|+ |+..+++.+++..++ ..+++++++.+ ++.+|.+++|.|+|++|+.++...
T Consensus 17 ~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 17 AHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHHH
Confidence 365 999995 999999999986223 34577888887 999999999999999999988653
No 14
>PF14658 EF-hand_9: EF-hand domain
Probab=99.16 E-value=3.4e-10 Score=53.80 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=52.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGD-QMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 62 (75)
+||.++.|.|...++...++++ +. .+++.+++.+ .+.+|+++. |.|+++.|+..|+.
T Consensus 6 ~fD~~~tG~V~v~~l~~~Lra~-~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLITYLRAV-TGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hcCCcCCceEeHHHHHHHHHHH-cCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHH
Confidence 5899999999999999999996 66 8999999998 999999988 99999999999864
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.15 E-value=1.8e-10 Score=57.63 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=48.6
Q ss_pred ccC--CCCCccCHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDL--DNDDAISRDELLAVLHMMVGANI----SEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~--~~~G~i~~~el~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
||. +++|+|+..+|..+++..++..+ +.+++..+ ++.+|.+++|.|+|++|+.++...
T Consensus 17 ~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 17 YSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 678 79999999999999986335433 47777777 999999999999999999988754
No 16
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.14 E-value=3.1e-10 Score=57.72 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=48.2
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+|.+++|.|+..+++.+++.. + ++.+++..+ ++.+|.+++|.|++++|+.++..
T Consensus 18 ~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 18 SLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHH
Confidence 3789999999999999999973 4 677887777 99999999999999999998753
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.13 E-value=3.7e-10 Score=56.91 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=47.3
Q ss_pred ccCCCCC-ccCHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDD-AISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G-~i~~~el~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.+++| +|+..||+.++...+ +...++.++.++ ++.+|.+++|.|+|+||+.++...
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4677765 999999999998742 234556777777 999999999999999999998654
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=8.9e-10 Score=50.69 Aligned_cols=54 Identities=43% Similarity=0.727 Sum_probs=48.9
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+|.+++|.|+..++..++..+ +...+.+.+..+ +..++.+++|.|++++|...+
T Consensus 9 ~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 9 FDKDGDGTISADELKAALKSL-GEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred hCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHh
Confidence 688999999999999999985 888888888877 999999999999999998765
No 19
>KOG0038|consensus
Probab=99.10 E-value=8.2e-10 Score=59.93 Aligned_cols=63 Identities=37% Similarity=0.610 Sum_probs=58.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+||-|++++|...+|...+.++....+++++++.++++++...|.+++|++++.||-.++.+.
T Consensus 116 IYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 116 IYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred EeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 478999999999999999999767789999999999999999999999999999999998765
No 20
>KOG0044|consensus
Probab=99.07 E-value=5.5e-10 Score=63.13 Aligned_cols=63 Identities=24% Similarity=0.463 Sum_probs=51.7
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGA------NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+||.|++|+|+++|+..++..++.. +......++.++.+++.+|.++||.|+++||...+...
T Consensus 108 lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 108 LYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred eecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 6899999999999999998874421 12244466778888999999999999999999998764
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.06 E-value=9.4e-10 Score=60.54 Aligned_cols=57 Identities=32% Similarity=0.573 Sum_probs=51.1
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+||++++|.|+..+|..+++.+ |..++..++..+ +..++. +++.|+|.+|+.+|...
T Consensus 28 l~D~d~~G~I~~~el~~ilr~l-g~~~s~~ei~~l----~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRSL-GFNPSEAEINKL----FEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHHc-CCCCcHHHHHHH----HHhccC-CCCccCHHHHHHHHHHH
Confidence 4799999999999999999984 999999999888 888888 88999999999988744
No 22
>KOG0028|consensus
Probab=99.04 E-value=2e-09 Score=58.96 Aligned_cols=58 Identities=33% Similarity=0.593 Sum_probs=53.3
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
++|.|++|.|+..+|+.+.+.+ |.++++++++++ +..+|.+++|-|+-++|..++.+.
T Consensus 114 l~D~D~~Gkis~~~lkrvakeL-genltD~El~eM----IeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEM----IEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cccccCCCCcCHHHHHHHHHHh-CccccHHHHHHH----HHHhcccccccccHHHHHHHHhcC
Confidence 4789999999999999999995 999999999999 999999999999999999988653
No 23
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.02 E-value=1.4e-09 Score=54.65 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=45.7
Q ss_pred CCCccCHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDELLAVLHMMVGANIS----EEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.+|+|+.+||+.++.+.++..++ ++++..+ ++.+|.+++|.|+|++|+.++...
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHH
Confidence 57999999999999754455565 7777777 999999999999999999998753
No 24
>PTZ00183 centrin; Provisional
Probab=99.02 E-value=2.6e-09 Score=57.95 Aligned_cols=57 Identities=39% Similarity=0.580 Sum_probs=47.6
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.+++|+|+..+|..++..+ +..++..++..+ +..++.+++|.|++.+|..++...
T Consensus 99 ~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 99 FDDDKTGKISLKNLKRVAKEL-GETITDEELQEM----IDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred hCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHhcc
Confidence 688888999998998888874 778888888777 888888888999999998888653
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.01 E-value=2.6e-09 Score=57.25 Aligned_cols=56 Identities=34% Similarity=0.620 Sum_probs=48.2
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.||.+++|+|+..++..++... +..++.+++..+ +..+|.+++|.|++.||..++.
T Consensus 92 ~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEM----IREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred hhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHH----HHhcCCCCCCcCcHHHHHHHHh
Confidence 3688999999999999999884 778888888777 8889999999999999988764
No 26
>KOG0028|consensus
Probab=98.95 E-value=3.5e-09 Score=58.03 Aligned_cols=57 Identities=21% Similarity=0.496 Sum_probs=51.6
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+||+++.|+|+..+|..+++++ |..+..+++.++ +..+|+++.|.|+|++|...++.
T Consensus 41 lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kl----l~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 41 LFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKL----LADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHH----HHhhhhccCceechHHHHHHHHH
Confidence 4789999999999999999985 999999998888 99999999999999999998764
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.92 E-value=8.5e-09 Score=55.25 Aligned_cols=56 Identities=36% Similarity=0.609 Sum_probs=48.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+|.+++|.|+..+|..++..+ +..++.+++..+ ++.+|.+++|.|++++|+.++..
T Consensus 20 ~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 20 FDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHH----HHhcCcCCCCcCcHHHHHHHHHH
Confidence 688999999999999999874 777777777776 99999999999999999988763
No 28
>PTZ00183 centrin; Provisional
Probab=98.90 E-value=1.3e-08 Score=55.15 Aligned_cols=56 Identities=25% Similarity=0.544 Sum_probs=46.8
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+|.+++|.|+..+|..++..+ +..++...+..+ +..+|.+++|.|++++|...+..
T Consensus 26 ~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l----~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 26 FDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQM----IADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred hCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCcEeHHHHHHHHHH
Confidence 688999999999999999875 777777777766 88889999999999999887653
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=1.1e-08 Score=53.81 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=42.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.|++|+|+.+||..+. + ...+..+.. ++..+|.+++|.|+++||...+.+.
T Consensus 57 lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~----f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 57 LDGNYDGKLSHHELAPIR--L---DPNEHCIKP----FFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HCCCCCCcCCHHHHHHHH--c---cchHHHHHH----HHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 689999999999999865 2 233444444 4999999999999999999998543
No 30
>KOG0030|consensus
Probab=98.84 E-value=1.4e-08 Score=54.64 Aligned_cols=55 Identities=22% Similarity=0.516 Sum_probs=48.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+||++++|.|...+|+.++.++ |..++++++.++ +.. ..|.+|.|+|+.|++.+.
T Consensus 96 vFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~L----lag-~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 96 VFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEEL----LAG-QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred hhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHH----Hcc-ccccCCcCcHHHHHHHHh
Confidence 5899999999999999999996 999999999886 554 357789999999998764
No 31
>KOG0037|consensus
Probab=98.79 E-value=3.6e-08 Score=56.38 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=51.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
||.|++|.|+..||+.++..+ |..++.+-.+.+ ++.+|..++|.|.|++|.+++..
T Consensus 133 ~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~l----v~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 133 YDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLL----VRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred cccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHH----HHHhccccCCceeHHHHHHHHHH
Confidence 799999999999999999995 999999888877 99999888999999999998753
No 32
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=1.7e-07 Score=47.28 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCCccCHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+.+.+++.||+..+.+-++ ..-.+..+.++ ++.+|.++||.|+|+||+.++...
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~i----m~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKI----MKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3578999999999987432 23344555555 999999999999999999998654
No 33
>KOG0031|consensus
Probab=98.66 E-value=2e-07 Score=51.02 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=53.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.||+++.|.|....|++++... +..++++++..+ ++.+-.+..|.++|.+|+.++..
T Consensus 109 ~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~m----~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 109 TFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDEM----YREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred hcCccCCCccCHHHHHHHHHHh-cccCCHHHHHHH----HHhCCcccCCceeHHHHHHHHHc
Confidence 4899999999999999999996 999999999998 99999999999999999999873
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.65 E-value=4.9e-08 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 38 RTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+++.+|.+++|.|+++||..++.+
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3499999999999999999998863
No 35
>KOG0041|consensus
Probab=98.63 E-value=1.2e-07 Score=54.01 Aligned_cols=57 Identities=32% Similarity=0.435 Sum_probs=49.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
||.+.+|+|+..||+.+|.++ |.+-+.--...+ ++..|.|.+|+|+|-||+-++.+.
T Consensus 108 yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~m----ikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 108 YDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred hcccccccccHHHHHHHHHHh-CCchhhHHHHHH----HHHhhcccccchhHHHHHHHHHHH
Confidence 799999999999999999996 766665555566 999999999999999999887643
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=98.63 E-value=1.7e-07 Score=61.01 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=51.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.+++|.|+.+||..++..+ +...+++++..+ ++.+|.+++|.|+++||..++...
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~ea----Fk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEEL----FKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHH----HHHhCCCCCCcCCHHHHHHHHHhc
Confidence 689999999999999999985 777888888888 999999999999999999998763
No 37
>KOG0030|consensus
Probab=98.52 E-value=2e-07 Score=50.20 Aligned_cols=58 Identities=19% Similarity=0.399 Sum_probs=50.2
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN--GDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~ 63 (75)
+||..++|+|+..+..++++.+ |.++++.++.+. +..+.++ .-.+|+|++|+.++...
T Consensus 19 lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~----l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 19 LFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKV----LGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred HHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHH----HcCcccchhhhhhhhHHHHHHHHHHH
Confidence 4889999999999999999996 999999999888 7777665 44789999999988754
No 38
>KOG0031|consensus
Probab=98.49 E-value=1.3e-06 Score=47.87 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=48.4
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH-----------------------------HHHHHHHhCCCCCCcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI-----------------------------AERTILEADQNGDQMI 51 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~d~~~~g~i 51 (75)
+.|.|++|.|.+++|+.++.++ |..++++++..+ +-..++.+|.++.|+|
T Consensus 40 ~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I 118 (171)
T KOG0031|consen 40 LMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKI 118 (171)
T ss_pred HHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCcc
Confidence 4689999999999999999995 888999888776 3345666777777888
Q ss_pred cHHHHHHHHhc
Q psy17264 52 SFDEFCKALER 62 (75)
Q Consensus 52 ~~~ef~~~~~~ 62 (75)
+-+.+..++..
T Consensus 119 ~~d~lre~Ltt 129 (171)
T KOG0031|consen 119 DEDYLRELLTT 129 (171)
T ss_pred CHHHHHHHHHH
Confidence 77777776654
No 39
>KOG0044|consensus
Probab=98.48 E-value=4e-07 Score=51.67 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=41.2
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
||.+++|.|+..||..++... ...-.++.+... ++.+|.+++|.|+++|++.++..
T Consensus 73 fD~~~dg~i~F~Efi~als~~-~rGt~eekl~w~----F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLT-SRGTLEEKLKWA----FRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHH-cCCcHHHHhhhh----heeecCCCCceEcHHHHHHHHHH
Confidence 688888888888888887764 333334444444 88888888888888888888754
No 40
>KOG0377|consensus
Probab=98.34 E-value=2.6e-06 Score=53.65 Aligned_cols=56 Identities=29% Similarity=0.453 Sum_probs=48.8
Q ss_pred ccCCCCCccCHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMV---GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.|.|.+|.|+.+||+.+.+-+. +..+++.++.++ -+.+|.++||+|++.||++...
T Consensus 556 iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 556 IDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHh
Confidence 5899999999999999987532 457888998888 8899999999999999999864
No 41
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.34 E-value=4e-06 Score=37.96 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
++..|++..++.+ +..+++..+..+ ++.+|.+++|.++-+||..++.
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHH
Confidence 5788999999985 999999988888 9999999999999999998875
No 42
>KOG0036|consensus
Probab=98.33 E-value=1.1e-06 Score=54.48 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=50.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCccc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQ 67 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 67 (75)
||.+++|.++..++...+.++ ..+ +..+-...+ ++.+|.+.+|.++|+||.+++...+...
T Consensus 23 lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~~~~~l----~~~~d~~~dg~vDy~eF~~Y~~~~E~~l 84 (463)
T KOG0036|consen 23 LDSKNDGQVDLDQLEKGLEKL-DHPKPNYEAAKML----FSAMDANRDGRVDYSEFKRYLDNKELEL 84 (463)
T ss_pred hccCCCCceeHHHHHHHHHhc-CCCCCchHHHHHH----HHhcccCcCCcccHHHHHHHHHHhHHHH
Confidence 688999999999999999985 555 555555666 9999999999999999999998765543
No 43
>KOG4065|consensus
Probab=98.31 E-value=5.3e-06 Score=43.64 Aligned_cols=59 Identities=32% Similarity=0.473 Sum_probs=48.9
Q ss_pred CccCCCCCccCHHHHHHHHHHHh-----CC----CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMV-----GA----NISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
+.|.|++|.++--|+..++...- |. -+++.+...+++.+++.-|.+++|.|+|.||++.
T Consensus 75 MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 75 MHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46889999999999999987621 11 2357788899999999999999999999999874
No 44
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=2.8e-06 Score=33.13 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.4
Q ss_pred HHHHHhCCCCCCcccHHHHHHHH
Q psy17264 38 RTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
.+++.+|.+++|.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 45999999999999999998864
No 45
>KOG0037|consensus
Probab=98.23 E-value=6.1e-06 Score=47.43 Aligned_cols=56 Identities=25% Similarity=0.211 Sum_probs=42.3
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
-|.++.|.|+.+||..++...-....+.+.++.+ +..+|.+..|+|.+.||..++.
T Consensus 66 vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~Tcrlm----I~mfd~~~~G~i~f~EF~~Lw~ 121 (221)
T KOG0037|consen 66 VDRDRSGRILAKELQQALSNGTWSPFSIETCRLM----ISMFDRDNSGTIGFKEFKALWK 121 (221)
T ss_pred hCccccccccHHHHHHHhhcCCCCCCCHHHHHHH----HHHhcCCCCCccCHHHHHHHHH
Confidence 3788999999999999988432456777777777 7777777777777777776654
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=9.4e-07 Score=35.68 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=18.9
Q ss_pred ccCCCCCccCHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~ 21 (75)
||+|++|+|+.+||..++++
T Consensus 9 ~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 9 FDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HSTTSSSEEEHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHh
Confidence 79999999999999999986
No 47
>PLN02964 phosphatidylserine decarboxylase
Probab=98.16 E-value=8.2e-06 Score=53.45 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=44.9
Q ss_pred CccCCCCCccCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVG-ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
++|++++|.+ +..+++++ + ..+++.+.. .++.+++.+|.+++|.|+++||..++...
T Consensus 151 lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~-fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 151 LLDPSSSNKV----VGSIFVSC-SIEDPVETERS-FARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHCCCCCCcC----HHHHHHHh-CCCCCCHHHHH-HHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 4799999997 88888885 7 477777621 13334999999999999999999998753
No 48
>KOG0036|consensus
Probab=98.15 E-value=9.9e-06 Score=50.47 Aligned_cols=56 Identities=25% Similarity=0.452 Sum_probs=51.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.|.+.||.|+.+|+...++.+ +.++++++..+. +..+|+++++.|+++||...+.-
T Consensus 91 iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~----~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKF----FEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred hccccCCccCHHHHHHHHHHh-CCccCHHHHHHH----HHHhccCCCeeeccHHHHhhhhc
Confidence 478899999999999999995 999999998887 99999999999999999988653
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.04 E-value=3.5e-05 Score=39.91 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=42.3
Q ss_pred CCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 5 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.++|.|+-.+.+.++.+ .+++.+.+..+ |...|.+++|+++++||+-.|+
T Consensus 21 ~~~g~isg~~a~~~f~~---S~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMK---SGLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp SSTTEEEHHHHHHHHHH---TTSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHH---cCCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHH
Confidence 35799999999998776 36888888877 9999999999999999998764
No 50
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=1.4e-05 Score=49.79 Aligned_cols=44 Identities=34% Similarity=0.478 Sum_probs=36.8
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+||.+++|.|+.+||.. ...+ |..+|.+++|.|+++||...+..
T Consensus 342 ~~D~dgdG~Is~~E~~~--------------~~~~----F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 342 LYDLDGDGFITREEWLG--------------SDAV----FDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HhCCCCCCcCcHHHHHH--------------HHHH----HHHhCCCCCCCCcHHHHHHHHHH
Confidence 47999999999999831 2334 99999999999999999998764
No 51
>KOG0040|consensus
Probab=97.99 E-value=1.8e-05 Score=55.82 Aligned_cols=60 Identities=15% Similarity=0.371 Sum_probs=51.1
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANIS-------EEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 65 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 65 (75)
.||++.+|.++..+|+.+++++ |..++ +++.++. +...|++.+|+|+..+|+.+|...+.
T Consensus 2261 hFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~----ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2261 HFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEI----LDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHH----HHhcCCCCcCcccHHHHHHHHHhccc
Confidence 4899999999999999999995 87653 3356666 99999999999999999999987644
No 52
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.86 E-value=3.7e-05 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 38 RTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.+++.+|.+++|.|+.+||..++.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 349999999999999999999987
No 53
>KOG0034|consensus
Probab=97.83 E-value=8.4e-05 Score=42.18 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=41.7
Q ss_pred ccCCCCCc-cCHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDA-ISRDELLAVLHMMVGANISEE-QLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~-i~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
|+.+++|. |+.++|.+.+... ....+.. .++-+ ++.+|.+++|.|+.+|+..++...
T Consensus 75 f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~~Kl~fa----F~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 75 FDTDGNGDPVDFEEFVRLLSVF-SPKASKREKLRFA----FRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HhccCCCCccCHHHHHHHHhhh-cCCccHHHHHHHH----HHHhcCCCCCcCcHHHHHHHHHHH
Confidence 45666666 8888888887764 3333333 44444 999999999999999999988653
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.83 E-value=1.5e-05 Score=32.35 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.3
Q ss_pred ccCCCCCccCHHHHHHHHH-HH
Q psy17264 2 YDLDNDDAISRDELLAVLH-MM 22 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~-~~ 22 (75)
||.+++|+|+.+||..+++ ++
T Consensus 9 ~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 9 FDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp H-TTSSSEEEHHHHHHHHHHHT
T ss_pred HCCCCCCcCcHHHHHHHHHHhc
Confidence 7999999999999999998 53
No 55
>KOG4223|consensus
Probab=97.56 E-value=0.00016 Score=43.83 Aligned_cols=57 Identities=30% Similarity=0.440 Sum_probs=40.6
Q ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 3 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
|.|++|.++.+||...+.= ...+.-.. -++...+...|+|++|+|+++||+.-+...
T Consensus 173 D~d~dg~lt~EEF~aFLHP--Ee~p~M~~--iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 173 DQDGDGSLTLEEFTAFLHP--EEHPHMKD--IVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred ccCCCCcccHHHHHhccCh--hhcchHHH--HHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 7889999999999887652 11111111 123334888999999999999999887644
No 56
>KOG0046|consensus
Probab=97.47 E-value=0.00052 Score=44.30 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=43.3
Q ss_pred CCCCccCHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 5 DNDDAISRDELLAVLHMMVGANI---SEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+++|+|+..++..++.+. +... ..++++++ +...+.+.+|.|+|++|+..+..
T Consensus 30 ~~~G~v~~~~l~~~f~k~-~~~~g~~~~eei~~~----l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKA-KLPLGYFVREEIKEI----LGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred CCCCeeehHHhHHHHHHh-cccccchhHHHHHHH----HhccCCCcCCccCHHHHHHHHHh
Confidence 889999999999999983 4333 35566666 99999999999999999997643
No 57
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.45 E-value=1.9e-05 Score=41.39 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=32.3
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 58 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 58 (75)
+|.+++|.|+..|+..+...+ ...+.=+.. +++..|.+++|.|++.||..
T Consensus 63 LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~----F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 63 LDRNKDGVLDRSELKPLRRPL---MPPEHCARP----FFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp H--T-SSEE-TTTTGGGGSTT---STTGGGHHH----HHHHH-TT-SSSEEHHHHHH
T ss_pred hcCCCCCccCHHHHHHHHHHH---hhhHHHHHH----HHHHcCCCCCCCCCHHHHcc
Confidence 588999999999998864432 233322334 49999999999999999975
No 58
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.42 E-value=0.00039 Score=26.42 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.7
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 38 RTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+++.+|.+++|.|++.+|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3499999999999999999998753
No 59
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.40 E-value=0.00012 Score=28.37 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.9
Q ss_pred ccCCCCCccCHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVL 19 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~ 19 (75)
+|.|++|.|+.+|+..++
T Consensus 8 ~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 8 FDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HTTTSSSEEEHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHC
Confidence 689999999999998853
No 60
>KOG2243|consensus
Probab=97.37 E-value=0.00054 Score=49.01 Aligned_cols=62 Identities=13% Similarity=0.355 Sum_probs=52.2
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCccccc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQKM 69 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 69 (75)
||+|+.|-|++.+|..++.. ....++.+++-+ +.-...+.+..++|.+|+.-...+.....+
T Consensus 4066 ydpdgkgiiskkdf~kame~--~k~ytqse~dfl----lscae~dend~~~y~dfv~rfhepakdigf 4127 (5019)
T KOG2243|consen 4066 YDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFL----LSCAEADENDMFDYEDFVDRFHEPAKDIGF 4127 (5019)
T ss_pred cCCCCCccccHHHHHHHHhc--cccchhHHHHHH----HHhhccCccccccHHHHHHHhcCchhhcCc
Confidence 79999999999999999986 567888888877 888888999999999999988765443333
No 61
>KOG4223|consensus
Probab=97.25 E-value=0.00029 Score=42.76 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=40.8
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
+|+|++|+++..|++..+.=. +....+.+.+-+ +...|.+.+|+++++|-+.-
T Consensus 250 ~DknkDG~L~~dEl~~WI~P~-~~d~A~~EA~hL----~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 250 RDKNKDGKLDGDELLDWILPS-EQDHAKAEARHL----LHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred hhcCCCCccCHHHHhcccCCC-CccHHHHHHHHH----hhhhccCccccccHHHHhhC
Confidence 689999999999999776521 333445554444 99999999999999997764
No 62
>KOG2643|consensus
Probab=97.06 E-value=0.00024 Score=44.78 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
++.|+..+++++.....|..+++.-+.- ++.-+|.|+||.++.+||+.++.+
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdv----vF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDV----VFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeee----EEEEEccCCCCcccHHHHHHHHHH
Confidence 4566777777776654466666654443 488899999999999999999875
No 63
>KOG3866|consensus
Probab=97.00 E-value=0.0027 Score=38.91 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=47.6
Q ss_pred CccCCCCCccCHHHHHHHHHHHh----CCCCCH-------HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMV----GANISE-------EQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
++|.+++|.++-.+|...+..-+ ..+-.+ +++-.+.+++++..|.+.+..|+.+||++.-.+.
T Consensus 252 LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 252 LHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred eeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 46889999999999999887532 222222 2333457889999999999999999999876543
No 64
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.95 E-value=0.0016 Score=30.44 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.9
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhccC
Q psy17264 38 RTILEADQNGDQMISFDEFCKALERTD 64 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~~~~~ 64 (75)
.+|+.+|.+++|.|+.+||..++....
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 349999999999999999999988654
No 65
>KOG0377|consensus
Probab=96.72 E-value=0.011 Score=37.88 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=44.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCC-------------------------------HHHH-----HH------HHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANIS-------------------------------EEQL-----TS------IAERT 39 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~-------------------------------~~~~-----~~------~~~~~ 39 (75)
+|+++.|+|+......++....+.+++ -+++ +. -++.+
T Consensus 473 ~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~Leti 552 (631)
T KOG0377|consen 473 YDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETI 552 (631)
T ss_pred cChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHH
Confidence 688899999999888888774443321 0000 00 06778
Q ss_pred HHHhCCCCCCcccHHHHHHHHh
Q psy17264 40 ILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 40 ~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
|+-+|.|+.|.|+.+||..++.
T Consensus 553 F~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred HHHhccCCCCceeHHHHHHHHH
Confidence 9999999999999999999875
No 66
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.61 E-value=0.023 Score=32.00 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=44.5
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHH-------------------------------------------------H
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQ-------------------------------------------------L 32 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~-------------------------------------------------~ 32 (75)
||.|++|.|.+.|--..++.+ |..+--.- +
T Consensus 16 FDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFv 94 (174)
T PF05042_consen 16 FDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFV 94 (174)
T ss_pred eCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCC
Confidence 799999999999988888773 44321111 0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 33 TSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 33 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.+-.+.++.+++..+.+.+++.|...++...
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 1115667999998888999999999998764
No 67
>KOG4251|consensus
Probab=96.42 E-value=0.0022 Score=38.21 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=37.7
Q ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 3 DLDNDDAISRDELLAVLHMMVGANISEEQLTSI---AERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
|.+.+|+|+..|+++.+..- +.+..++. -+..|+..|++++|.|+++||..-..
T Consensus 111 DVNtDrkisAkEmqrwImek-----taEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 111 DVNTDRKISAKEMQRWIMEK-----TAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred ccCccccccHHHHHHHHHHH-----HHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 56788999999999888752 12222222 12247788999999999999876543
No 68
>KOG2643|consensus
Probab=96.37 E-value=0.0023 Score=40.60 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=41.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
|+.+++|.|+..|+.-.+.-+ . .++...+-. ++.+|.|+||-|+.+||..++
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlL-S--~p~~~F~IA----FKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLL-S--IPERNFRIA----FKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHH-c--cCcccceee----eeeeecCCCCcccHHHHHHHH
Confidence 567889999999999877753 3 333333334 899999999999999999886
No 69
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.26 E-value=0.0043 Score=27.88 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.0
Q ss_pred ccCCCCCccCHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~ 21 (75)
+|.+++|+|+.+||..++..
T Consensus 34 ~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 34 FDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HTTSSSSSEEHHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHh
Confidence 68999999999999998864
No 70
>KOG0751|consensus
Probab=96.25 E-value=0.023 Score=36.98 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.9
Q ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCcccc
Q psy17264 3 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQK 68 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 68 (75)
|..++|.|+++||+. ++.. ...++...... +..+|+.++|.++++++..++.+....+.
T Consensus 84 D~tKDglisf~eF~a-fe~~--lC~pDal~~~a----FqlFDr~~~~~vs~~~~~~if~~t~l~~~ 142 (694)
T KOG0751|consen 84 DQTKDGLISFQEFRA-FESV--LCAPDALFEVA----FQLFDRLGNGEVSFEDVADIFGQTNLHHH 142 (694)
T ss_pred hhcccccccHHHHHH-HHhh--ccCchHHHHHH----HHHhcccCCCceehHHHHHHHhccccccC
Confidence 556789999999987 4432 23344444555 99999999999999999999887655444
No 71
>KOG2562|consensus
Probab=96.09 E-value=0.0097 Score=38.08 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=38.3
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.|.+|.|++++|..-.. ..++.--+..+.+++-+..-...+|+++|++|+-++...
T Consensus 287 LD~Dhd~lidk~~L~ry~d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGD----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hccccccccCHHHHHHHhc----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 5889999999999887533 334433333332222224455678999999999998654
No 72
>KOG4578|consensus
Probab=95.80 E-value=0.012 Score=36.40 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=40.6
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+|++.++.|.+.|.+-.=+-+ .... ..++....+++..|.++|.+|+++|+...+..
T Consensus 341 qLdkN~nn~i~rrEwKpFK~~l-~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 341 QLDKNSNNDIERREWKPFKRVL-LKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eecccccCccchhhcchHHHHH-Hhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3688999999988866543322 1111 22333344599999999999999999998753
No 73
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.66 E-value=0.05 Score=27.39 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhccC
Q psy17264 37 ERTILEADQNGDQMISFDEFCKALERTD 64 (75)
Q Consensus 37 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 64 (75)
..+|..+|.+++|.|+.+++..++...+
T Consensus 13 ~~~F~~~D~d~~G~Is~~el~~~l~~~~ 40 (96)
T smart00027 13 EQIFRSLDKNQDGTVTGAQAKPILLKSG 40 (96)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHcC
Confidence 4458999999999999999999987643
No 74
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.60 E-value=0.03 Score=24.76 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 38 RTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 38 ~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.++..+|.+++|.|++++|..++...
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 34889999999999999999988754
No 75
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.40 E-value=0.033 Score=25.67 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhccC
Q psy17264 39 TILEADQNGDQMISFDEFCKALERTD 64 (75)
Q Consensus 39 ~~~~~d~~~~g~i~~~ef~~~~~~~~ 64 (75)
++..+|.+++|.|+.+|+..++...+
T Consensus 4 ~F~~~D~~~~G~i~~~el~~~l~~~g 29 (67)
T cd00052 4 IFRSLDPDGDGLISGDEARPFLGKSG 29 (67)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence 48889999999999999999886543
No 76
>KOG1955|consensus
Probab=95.33 E-value=0.056 Score=35.34 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=39.6
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+|.+|.|+-.--+..+.+ .+++-.++.-+ |...|-+.||-+++.||+..++
T Consensus 242 pDp~gfisGsaAknFFtK---Sklpi~ELshI----WeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 242 PDPHGFISGSAAKNFFTK---SKLPIEELSHI----WELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred CCcccccccHHHHhhhhh---ccCchHHHHHH----HhhcccCccccccHHHHHhhHh
Confidence 456777877766666654 35667776665 9999999999999999999875
No 77
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.30 E-value=0.12 Score=25.31 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCccCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+.+.++.++|...+..-=+. ..+.+++..++.+.-........+.+++++|..++...
T Consensus 12 ~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 12 DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 57899999999999863122 35788888873333222222357999999999998754
No 78
>KOG0042|consensus
Probab=95.04 E-value=0.043 Score=36.27 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=49.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.|+.|+++..++..++++. +.+.+++...+. +.+.+..-+|.+...||.+++...
T Consensus 602 lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 602 LDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEE----LQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred hcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHHH
Confidence 578889999999999999986 678888888877 888888889999999999998743
No 79
>KOG4666|consensus
Probab=94.56 E-value=0.04 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=16.6
Q ss_pred HHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 40 ILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 40 ~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
++..+...+++|.+++|.+++...
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhC
Confidence 556666667778888877776544
No 80
>KOG0038|consensus
Probab=94.54 E-value=0.049 Score=30.18 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=37.3
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
|..||.|.++.++|.+++.-+ ....+.+ +. +...++-+|-++++.|--++....+..
T Consensus 80 FSeDG~GnlsfddFlDmfSV~-sE~APrd-lK--~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVF-SEMAPRD-LK--AKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred hccCCCCcccHHHHHHHHHHH-HhhChHH-hh--hhheeEEeecCCCCcccHHHHHHHHHH
Confidence 567888888888888888764 3322222 11 223366678888888877777766553
No 81
>KOG4251|consensus
Probab=94.44 E-value=0.067 Score=32.09 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=41.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
+|.+.+|.+|.+||...+.-+ +....-.+...+ +...|.+++.+++.++.+..
T Consensus 290 IDsNhDGivTaeELe~y~dP~-n~~~alne~~~~----ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 290 IDSNHDGIVTAEELEDYVDPQ-NFRLALNEVNDI----MALTDANNDEKLSLEELLER 342 (362)
T ss_pred hhcCCccceeHHHHHhhcCch-hhhhhHHHHHHH----HhhhccCCCcccCHHHHHHH
Confidence 578899999999999876543 444555555555 88889999999999988764
No 82
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.21 E-value=0.11 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.3
Q ss_pred HHHHHHhCC--CCCCcccHHHHHHHHhc
Q psy17264 37 ERTILEADQ--NGDQMISFDEFCKALER 62 (75)
Q Consensus 37 ~~~~~~~d~--~~~g~i~~~ef~~~~~~ 62 (75)
..+|..+|. +++|.|+.+++..++..
T Consensus 11 ~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 11 IDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 344999999 89999999999999864
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.02 E-value=0.13 Score=32.50 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHH
Q psy17264 36 AERTILEADQNGDQMISFDEFC 57 (75)
Q Consensus 36 ~~~~~~~~d~~~~g~i~~~ef~ 57 (75)
+..+|+.+|.+++|.|+.+||.
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHH
Confidence 4455999999999999999997
No 84
>KOG1029|consensus
Probab=93.86 E-value=0.11 Score=35.72 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=43.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+|+...|++|-..-+.++.. ..+++..+-.+ |...|.|+||+++.+||.-.|.
T Consensus 204 ~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~I----W~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 204 LDKTRSGYLSGQQARSALGQ---SGLPQNQLAHI----WTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cccccccccccHHHHHHHHh---cCCchhhHhhh----eeeeccCCCCcccHHHHHHHHH
Confidence 57778899998888887764 35777776666 9999999999999999987754
No 85
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=93.55 E-value=0.11 Score=26.20 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=17.7
Q ss_pred ccCCCCCccCHHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMM 22 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~ 22 (75)
+|.+++|.|+.+||..++..+
T Consensus 62 lD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 62 LDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred hCCCCCCCCCHHHHHHHHHHH
Confidence 478889999999999888764
No 86
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.53 E-value=0.081 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 27 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 27 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+++++.+.+ +.++-.+..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHH----HTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhh----hhhCcCCccCCEeHHHHHHHcc
Confidence 678888777 9999999999999999998765
No 87
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=93.41 E-value=0.18 Score=25.32 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.9
Q ss_pred HHHHhCC-CCCCcccHHHHHHHHhc
Q psy17264 39 TILEADQ-NGDQMISFDEFCKALER 62 (75)
Q Consensus 39 ~~~~~d~-~~~g~i~~~ef~~~~~~ 62 (75)
+|+.+|. +++|.|+..|+..++..
T Consensus 13 ~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 13 NFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHhCCCCCCeECHHHHHHHHHH
Confidence 4899999 99999999999999976
No 88
>KOG2562|consensus
Probab=93.40 E-value=0.4 Score=31.11 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=39.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMV-------GANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
+|.+++|.++..|++-..+... ...++- +.+..+++...-+...++|++++|...
T Consensus 360 lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~f---ed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPF---EDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccH---HHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 6889999999999988776532 112232 233334477777788999999999883
No 89
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=93.21 E-value=0.32 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHhC-CCCCC-cccHHHHHHHHhc
Q psy17264 38 RTILEAD-QNGDQ-MISFDEFCKALER 62 (75)
Q Consensus 38 ~~~~~~d-~~~~g-~i~~~ef~~~~~~ 62 (75)
.+|..+| .+++| .|+..|+..++..
T Consensus 13 ~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 13 NVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 3499996 99999 5999999999864
No 90
>KOG4666|consensus
Probab=93.02 E-value=0.4 Score=29.99 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=46.8
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+||.+.+|.++..+....+.-+.+...+..-++-. ++.++-+.||.+.-.+|..++..
T Consensus 267 LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~a----fk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 267 LFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYA----FKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred eecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHH----HHhcccccccccchHHHHHHHHH
Confidence 68999999999888777776655667777777766 99999999999998888777653
No 91
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=92.96 E-value=0.3 Score=25.76 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 36 AERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 36 ~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+.-.|..+|.+++|.|+.+|+..+.
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 4445999999999999999999875
No 92
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=92.72 E-value=0.22 Score=24.87 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHhC-CCCCC-cccHHHHHHHHhc
Q psy17264 39 TILEAD-QNGDQ-MISFDEFCKALER 62 (75)
Q Consensus 39 ~~~~~d-~~~~g-~i~~~ef~~~~~~ 62 (75)
+|+.+| .+++| .|+..++..++..
T Consensus 13 aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 13 VFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHhcccCCCcCEECHHHHHHHHHH
Confidence 388997 78999 5999999999876
No 93
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.64 E-value=0.27 Score=24.64 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHHHhCC-CC-CCcccHHHHHHHHhc
Q psy17264 39 TILEADQ-NG-DQMISFDEFCKALER 62 (75)
Q Consensus 39 ~~~~~d~-~~-~g~i~~~ef~~~~~~ 62 (75)
+|..+|. ++ +|.|+.+|+..++..
T Consensus 13 ~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 13 TFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHhccCCCCCeECHHHHHHHHHH
Confidence 3889987 87 699999999998764
No 94
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=92.46 E-value=0.21 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.5
Q ss_pred ccCCCCCccCHHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMM 22 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~ 22 (75)
+|.|++|.|+.+||..++..+
T Consensus 61 ~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 61 LDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred cCCCCCCcCcHHHHHHHHHHH
Confidence 578899999999998887764
No 95
>KOG0041|consensus
Probab=92.40 E-value=0.25 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCc
Q psy17264 36 AERTILEADQNGDQMISFDEFCKALERTDV 65 (75)
Q Consensus 36 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 65 (75)
+..+|+.+|.+.||.|++.|...+|.+.+.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga 130 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGA 130 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCC
Confidence 455699999999999999999999876544
No 96
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=91.03 E-value=0.36 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.7
Q ss_pred ccCCCCCccCHHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMM 22 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~ 22 (75)
+|.+++|.|+.++|..++..+
T Consensus 60 ~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 60 LDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cCCCCCCcCcHHHHHHHHHHH
Confidence 577888889988888877763
No 97
>KOG0751|consensus
Probab=90.21 E-value=1.1 Score=29.78 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=35.8
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-hCCCCCCcccHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE-ADQNGDQMISFDEFCKA 59 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~g~i~~~ef~~~ 59 (75)
.++.-+.+.++|.+-...+++.+-..+++..+ +.. .|...||-|+|+||+.+
T Consensus 47 ~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~L----la~iaD~tKDglisf~eF~af 99 (694)
T KOG0751|consen 47 KNGESYMTPEDFVRRYLGLYNESNFNDKIVRL----LASIADQTKDGLISFQEFRAF 99 (694)
T ss_pred hccccccCHHHHHHHHHhhcccccCChHHHHH----HHhhhhhcccccccHHHHHHH
Confidence 45566778888887776655555445555544 443 56778899999999875
No 98
>KOG1029|consensus
Probab=87.43 E-value=2.3 Score=29.79 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 5 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
-+.|+|+-..-+.++-. ..++..-+-++ |...|.|.||+++..||.-.|.
T Consensus 27 p~~gfitg~qArnfflq---S~LP~~VLaqI----WALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQ---SGLPTPVLAQI----WALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred CCCCccchHhhhhhHHh---cCCChHHHHHH----HHhhhcCccccchHHHHHHHHH
Confidence 35688888877777654 34666665566 9999999999999999987764
No 99
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=86.91 E-value=3.7 Score=22.70 Aligned_cols=54 Identities=15% Similarity=0.353 Sum_probs=35.9
Q ss_pred CCCCccCHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 5 DNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+...++-..|..+++.. ++..++...+.-+ |..+-..+..+|+|++|...+..
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHHH
Confidence 344557777888888862 1345677666655 88876667778999999998864
No 100
>KOG0035|consensus
Probab=85.76 E-value=2.9 Score=29.47 Aligned_cols=60 Identities=30% Similarity=0.249 Sum_probs=44.9
Q ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 3 DLDNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+....|..+.+++..++-++ |..... +++..-+-.+....+....|++++.+|...+.+-
T Consensus 757 ~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 757 DKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 45567889999999999885 776654 4444445555777777778999999999988753
No 101
>KOG0169|consensus
Probab=84.78 E-value=2.4 Score=29.25 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=44.7
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.|++++|.++..+...++..+ +..+.......+ ++..+..+++++...+|.+....
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~----f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRL----FKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HccccccccchhhHHHHHHHH-HHhhhHHHHHHH----HHHHHhhccceehHHHHHHHHHh
Confidence 478899999999999988885 777777777766 77777778888888888877654
No 102
>KOG0040|consensus
Probab=84.46 E-value=2.7 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCcccc
Q psy17264 26 NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQK 68 (75)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 68 (75)
..+++.+.+ .+-+|+.||.+.+|++++++|..++...+...+
T Consensus 2246 GVtEe~L~E-Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lp 2287 (2399)
T KOG0040|consen 2246 GVTEEQLKE-FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLP 2287 (2399)
T ss_pred CCCHHHHHH-HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCc
Confidence 456655544 355699999999999999999999987665443
No 103
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=84.13 E-value=3.6 Score=20.70 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCccCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 6 NDDAISRDELLAVLHMMVG-ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+|.++..|...+-..+-. ..++..+...+ +..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAEL----LAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHH
Confidence 4788998887665543212 35777777766 44444444455677777777654
No 104
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.56 E-value=2.1 Score=15.69 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=12.9
Q ss_pred cCCCCCccCHHHHHHHH
Q psy17264 3 DLDNDDAISRDELLAVL 19 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~ 19 (75)
|.+++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67899999988876643
No 105
>KOG3555|consensus
Probab=81.56 E-value=3.7 Score=26.09 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=34.7
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
+|.+.+|.++..|+..+-.- -.+ ..+..+|...|...+|.|+-.||.-...+.
T Consensus 259 lD~N~Dl~Ld~sEl~~I~ld-----knE----~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 259 LDTNYDLLLDQSELRAIELD-----KNE----ACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred cccccccccCHHHhhhhhcc-----Cch----hHHHHHHhhhcccccCccccchhhhhhccC
Confidence 35566666666666554321 111 124455999999999999999998877653
No 106
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=81.38 E-value=1.9 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.450 Sum_probs=19.3
Q ss_pred CccCCCCCccCHHHHHHHHHH
Q psy17264 1 MYDLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~ 21 (75)
+||...+.+|+.+++.++++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 689999999999999999885
No 107
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.65 E-value=5 Score=19.34 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
-.++...|..++... ++...+..+ .+.++.=..++|+.++|++.+...
T Consensus 7 p~~~F~~L~~~l~~~----l~~~~~~~l----~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKH----LPPSKMDLL----QKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHH----CCHHHHHHH----HHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666666666653 555555544 444544468899999999988653
No 108
>KOG1707|consensus
Probab=80.41 E-value=16 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 36 AERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 36 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+..++..+|.++||-++-.|+..+...
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 445566677777777777777666553
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=80.01 E-value=13 Score=25.30 Aligned_cols=53 Identities=4% Similarity=0.040 Sum_probs=39.1
Q ss_pred CCCCccCHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 5 DNDDAISRDELLAVLHMMVG--ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
++.|.++.+++....+.+ . ...+.+++..+ |..+..+ .+.++.++|..++...
T Consensus 12 ~~~g~l~f~~f~~f~~~~-k~~~~~~r~ei~~l----f~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKF-KITEAEPPDDVKDV----FCKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred ccCCCcCHHHHHHHHHHh-ccccCCChHHHHHH----HHHHhCC-CCccCHHHHHHHHHHh
Confidence 356899999998877764 3 22367788877 8887654 4689999999998753
No 110
>KOG1954|consensus
Probab=79.65 E-value=4.6 Score=26.19 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=32.5
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
+|+|+-..-+.-+. ..+++..-+-++ |+..|.+.+|.++-+||.-.
T Consensus 457 ~gk~sg~~ak~~mv---~sklpnsvlgki----wklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMV---KSKLPNSVLGKI----WKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CceeccchhHHHHH---hccCchhHHHhh----hhhhcCCcccCcCHHHHHHH
Confidence 56666554444333 345666666666 99999999999999999754
No 111
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.66 E-value=5.7 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
|=.|+.+-++.++..+ |.++++.+++++
T Consensus 29 NPpine~mir~M~~QM-G~kpSekqi~Q~ 56 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM-GRKPSEKQIKQM 56 (64)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHH
Confidence 3457778888888885 888888888877
No 112
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=78.53 E-value=6.8 Score=19.70 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=32.0
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
--|++.+|+.++.+..+.... .+...+ -..+|.-.++.||.=||--..
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~-~~~~aL----k~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSG-LEAMAL----KSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSH-HHHHHH----HHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCch-HHHHHH----HHHHhcccCCccchhhhHHHH
Confidence 458899999999985343333 333443 556899999999988775543
No 113
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=77.86 E-value=6.5 Score=22.48 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.+.+|+++.++|......- +..++.+++.++
T Consensus 27 ~d~~G~v~v~dLL~~~~~~-~~~~t~~~i~~v 57 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFK-GLWVTEEDIREV 57 (186)
T ss_dssp --TT--EEHHHHHHHHHHT--TT--HHHHHHH
T ss_pred cCCCCCEeHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 5789999999999988863 667788888877
No 114
>PRK00523 hypothetical protein; Provisional
Probab=77.80 E-value=6.6 Score=19.11 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
|=.|+.+-++.++..+ |.++++.+++++
T Consensus 37 NPpine~mir~M~~QM-GqKPSekki~Q~ 64 (72)
T PRK00523 37 NPPITENMIRAMYMQM-GRKPSESQIKQV 64 (72)
T ss_pred CcCCCHHHHHHHHHHh-CCCccHHHHHHH
Confidence 3357777788888875 888998888877
No 115
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=77.67 E-value=6.4 Score=23.79 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=35.3
Q ss_pred CccCHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 8 DAISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 8 G~i~~~el~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
-.+++.+|..++...+ +..++++++.-+.++++..-....+..|++..|.+-
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 4578899999886522 778999999888777787665567889999998653
No 116
>KOG1707|consensus
Probab=76.32 E-value=3.4 Score=27.88 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=34.7
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANI----SEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
||.|++|.++..|+..++... +..+ ...+. .-.+..|.+++..|+..+.
T Consensus 324 ~D~d~Dg~L~p~El~~LF~~~-P~~pW~~~~~~~~----------t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 324 FDRDNDGALSPEELKDLFSTA-PGSPWTSSPYKDS----------TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred ccCCCCCCcCHHHHHHHhhhC-CCCCCCCCccccc----------ceecccceeehhhHHHHHH
Confidence 799999999999999999974 4333 11111 1123678899998888764
No 117
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=75.64 E-value=9.7 Score=19.98 Aligned_cols=59 Identities=20% Similarity=0.410 Sum_probs=37.6
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCC------CCHHHH-HHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGAN------ISEEQL-TSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+||...+-+|+.+++..+++. |.. -+.+++ +.++-+++-+-...+...++..=..+++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~--g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE--GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIR 76 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC--CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 689999999999999999986 332 122222 33444446665556666776665555544
No 118
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=75.42 E-value=4.5 Score=18.91 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=19.9
Q ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHH
Q psy17264 9 AISRDELLAVLHMMVGANISEEQLTS 34 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~~~~~~~~~~ 34 (75)
.|+.++|..++++. ...++.+++.+
T Consensus 29 ~it~~DF~~Al~~~-kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKV-KPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTC-GGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCCCHHHHHH
Confidence 48899999999984 78888888765
No 119
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=73.12 E-value=8.2 Score=17.94 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=25.9
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTIL 41 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (75)
-.+|.+|+...+.++ +..++..++-.++.++..
T Consensus 8 ~~lTeEEl~~~i~~L-~~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 8 KKLSKEELNELINSL-DEIPNRNDMLIIWNQVHG 40 (61)
T ss_pred HHccHHHHHHHHHhh-cCCCCHHHHHHHHHHHHH
Confidence 457889999999995 888998888877555444
No 120
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=72.74 E-value=20 Score=22.43 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+|.+|++|-...+++. ....+++.++.. ++.++ |+-+||-.++
T Consensus 300 ~G~itReeal~~v~~~-d~~~~~~~~~~~----~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEY-DGEFPKEDLEYF----LKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHh-cccccHHHHHHH----HHHhC------CCHHHHHHHh
Confidence 5666666666666652 334444444444 55553 4555555543
No 121
>PRK01844 hypothetical protein; Provisional
Probab=70.86 E-value=11 Score=18.38 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=20.9
Q ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 9 AISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.|+.+-++.++..+ |.++++.+++++
T Consensus 38 pine~mir~Mm~QM-GqkPSekki~Q~ 63 (72)
T PRK01844 38 PINEQMLKMMMMQM-GQKPSQKKINQM 63 (72)
T ss_pred CCCHHHHHHHHHHh-CCCccHHHHHHH
Confidence 57777788888875 888998888877
No 122
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=70.83 E-value=9.9 Score=17.91 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Q psy17264 6 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 47 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 47 (75)
.++.++...+...+... +..++++.++.. ++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRrr----Lr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRRR----LRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHHH----HHHHHHCC
Confidence 45678889999988874 888888888877 77777654
No 123
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=70.56 E-value=18 Score=20.71 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.|.+|++..++|...+... ....+.+++.++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~v 58 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAV 58 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHH
Confidence 4789999999999988753 456888887776
No 124
>COG5562 Phage envelope protein [General function prediction only]
Probab=69.72 E-value=4.5 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=20.6
Q ss_pred HHHhCCCCCCcccHHHHHHHHhccCc
Q psy17264 40 ILEADQNGDQMISFDEFCKALERTDV 65 (75)
Q Consensus 40 ~~~~d~~~~g~i~~~ef~~~~~~~~~ 65 (75)
......+..|..+|+||+..+...++
T Consensus 78 ~~al~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 78 KTALRRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHHHHHhcCCccHHHHHHHHHhCCe
Confidence 34456678999999999999887665
No 125
>KOG2871|consensus
Probab=68.53 E-value=3.9 Score=26.21 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=37.9
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+|+.++|+|+..-++..+... +...++...-.+ +-..+|+..-|.|-..+|+.-..
T Consensus 318 ~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~l---~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 318 YDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVML---MRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred cCccCCCeeecHHHHHHHHHh-cccccCHHHHHH---hcCccChhhcceEEecccccccc
Confidence 688899999999999999885 655665543333 13336677777776666655443
No 126
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.45 E-value=17 Score=19.46 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCccCHHHHHHHHHHHh-------CCCCC------HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMV-------GANIS------EEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+..++..++..++..++ +.... +.-.+-+++-++..+|++++|+|+.-+|...+
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 45689999998888765 11111 12334456778999999999999988886654
No 127
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=66.00 E-value=12 Score=18.60 Aligned_cols=48 Identities=8% Similarity=0.174 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh--CCCCCCcccHHHHHHH
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTSIAERTILEA--DQNGDQMISFDEFCKA 59 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~ef~~~ 59 (75)
+..||...+... ...++..++...++.++..+ ....++.|.+.+|-.+
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG~F 51 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSF 51 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCcEEE
Confidence 567777777652 34578888777766666554 2234556666655443
No 128
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=65.98 E-value=8.8 Score=15.47 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=11.5
Q ss_pred CCccCHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHM 21 (75)
Q Consensus 7 ~G~i~~~el~~~~~~ 21 (75)
.|.|+.+++.++...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 577888888887765
No 129
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.40 E-value=15 Score=17.84 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=21.4
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
|=.|+.+-++.++..+ |.++|+..++++
T Consensus 36 NPpine~~iR~M~~qm-GqKpSe~kI~Qv 63 (71)
T COG3763 36 NPPINEEMIRMMMAQM-GQKPSEKKINQV 63 (71)
T ss_pred CCCCCHHHHHHHHHHh-CCCchHHHHHHH
Confidence 3457777778877775 888888888877
No 130
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=63.16 E-value=32 Score=22.62 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=36.3
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCccc
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQL----TSIAERTILEADQNGDQMISFDEFCKALERTDVEQ 67 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 67 (75)
+.++.+++.++++..+. ..+++ .++.+..-+....++...-++++|++.+...+.+.
T Consensus 416 ~~~~~~~v~~~v~~~m~---~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~~~ 476 (477)
T PLN02863 416 TVPDSDELARVFMESVS---ENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGLEE 476 (477)
T ss_pred CCcCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhccCC
Confidence 56788999999987532 12232 23333334445566667778899999888766654
No 131
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=63.00 E-value=17 Score=17.65 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHH
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTS 34 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~ 34 (75)
+.++++.-+... -...+..++..
T Consensus 14 ~~e~vk~~F~~~-~~~Vs~~EI~~ 36 (71)
T PF04282_consen 14 DPEEVKEEFKKL-FSDVSASEISA 36 (71)
T ss_pred CHHHHHHHHHHH-HCCCCHHHHHH
Confidence 445555555543 23445555443
No 132
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.97 E-value=22 Score=19.74 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCccCHHHH---HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDEL---LAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
-+|.++..|. +.+++. ...++..++..+ +.....-+...+++..|...+.+.
T Consensus 41 ADG~v~~~E~~a~r~il~~--~f~i~~~~l~al----i~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 41 ADGTVSESEREAFRAILKE--NFGIDGEELDAL----IEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred cccCcCHHHHHHHHHHHHH--HcCCCHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4677776664 444443 456777777776 555555566677888888777643
No 133
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=59.93 E-value=15 Score=18.01 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=17.8
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 44 (75)
.|+||..++..++.. ..++.+.+..+ +..+.
T Consensus 19 ~G~lT~~eI~~~L~~---~~~~~e~id~i----~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPE---DDLDPEQIDEI----YDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S----S---HHHHHHH----HHHHH
T ss_pred cCcCCHHHHHHHcCc---cCCCHHHHHHH----HHHHH
Confidence 588999998887764 34667777766 55543
No 134
>PLN02554 UDP-glycosyltransferase family protein
Probab=59.60 E-value=33 Score=22.49 Aligned_cols=56 Identities=7% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCccCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 7 DDAISRDELLAVLHMMVGANI-SEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+.++.+++.++++.++.... -.+...++.+.+-+.....+...-++++|++.+.+
T Consensus 422 ~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 422 METVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred cCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 357899999999998643110 01122233333334445566667778888877654
No 135
>KOG4347|consensus
Probab=59.38 E-value=13 Score=25.50 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=28.4
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 55 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 55 (75)
+|.+.+|.|+.+++...+..+...... +. +..+++.++++++ ..+.++
T Consensus 564 ~D~s~~g~Ltf~~lv~gL~~l~~~~~~-ek----~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 564 LDDSMTGLLTFKDLVSGLSILKAGDAL-EK----LKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred cccCCcceeEHHHHHHHHHHHHhhhHH-HH----HHHHHhhccCCcc-cccccc
Confidence 577888888888888887764221111 11 2233666776666 554443
No 136
>KOG4347|consensus
Probab=59.32 E-value=19 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 34 SIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 34 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
-.++++|...|.+.+|.++|.+++..+.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~ 582 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLS 582 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHH
Confidence 3466779999999999999999998765
No 137
>PLN03007 UDP-glucosyltransferase family protein
Probab=57.81 E-value=49 Score=21.71 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCccCHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 7 DDAISRDELLAVLHMMVGANI---SEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.+.++.+++.++++.++...- -.+...++.+..-+....++...-++++|++.+.
T Consensus 422 ~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~ 479 (482)
T PLN03007 422 GDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELN 479 (482)
T ss_pred cCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356899999999998643220 1112222222233334455666777778877664
No 138
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=57.61 E-value=7.2 Score=20.61 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCccCHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 7 DDAISRDELLAVLHMM-VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+|.++..|...+...+ -...++..+...+ ...++.......++.+|+..+.
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEEL----IELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHH----HHHHCHHHHHCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHH----HHHHHHHHhccccHHHHHHHHH
Confidence 6777777766654432 1233344444443 2223222222445555555443
No 139
>PLN02210 UDP-glucosyl transferase
Probab=56.13 E-value=55 Score=21.42 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQL----TSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+|.++.+++.++++.++.. ...+++ .++.+..-+....++...-++++|+..+
T Consensus 397 ~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~ 453 (456)
T PLN02210 397 DGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDI 453 (456)
T ss_pred CCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4689999999999986432 211222 2333334444566666677778887765
No 140
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=56.12 E-value=23 Score=17.08 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=9.1
Q ss_pred CCccCHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHM 21 (75)
Q Consensus 7 ~G~i~~~el~~~~~~ 21 (75)
.|++..+|+..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 466666666666544
No 141
>PTZ00056 glutathione peroxidase; Provisional
Probab=55.64 E-value=31 Score=19.79 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=18.2
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 47 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 47 (75)
|.++.+++...+..+ +..+..+++ ++.+|+-+
T Consensus 163 g~~~~~~l~~~I~~l----l~~~~~~~~----~~~~~~~~ 194 (199)
T PTZ00056 163 PRTEPLELEKKIAEL----LGVKDYQEL----FKNYDKLH 194 (199)
T ss_pred CCCCHHHHHHHHHHH----HHHHHHHHH----HHhhhhcC
Confidence 555666666666654 344455555 66655433
No 142
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=54.91 E-value=17 Score=18.24 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCCCCcccHHHHHHH
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFCKA 59 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~ 59 (75)
++..||...+... ..++..++...++.++..+. ....+.|.+.+|-.+
T Consensus 2 mtk~eli~~ia~~--~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG~F 51 (96)
T TIGR00987 2 LTKAEMSEYLFDE--LGLSKREAKELVELFFEEIRRALENGEQVKLSGFGNF 51 (96)
T ss_pred CCHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCCEEE
Confidence 5677888877763 45788887777666665542 234445666655433
No 143
>PLN02764 glycosyltransferase family protein
Probab=52.87 E-value=64 Score=21.24 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=34.9
Q ss_pred CccCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 8 DAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
|.++.+++.++++.++... ...+++++.+..+-..+...+...-++++|++.+.+.
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5789999999999875432 2233344443333444444456666888888877654
No 144
>PLN02167 UDP-glycosyltransferase family protein
Probab=52.42 E-value=65 Score=21.16 Aligned_cols=55 Identities=15% Similarity=0.334 Sum_probs=34.0
Q ss_pred CccCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 8 DAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+.++.+++.++++.++... .-.+.+.++.+.+-+....++...-++++|+..+.+
T Consensus 417 ~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 417 EIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred CcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5679999999998864322 112223333333444455666677788888887654
No 145
>PLN02207 UDP-glycosyltransferase
Probab=52.28 E-value=50 Score=21.80 Aligned_cols=54 Identities=9% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLT----SIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
++.++.+++.++++.+++. ..++++ ++.+.+-+....++...-++++|++.+..
T Consensus 408 ~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 408 DEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred CCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 4567999999999987541 122332 22222333345556666677777776653
No 146
>PLN02208 glycosyltransferase family protein
Probab=49.42 E-value=72 Score=20.83 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+|.++.+++..+++.++... ...+++++.+..+-..+...+...-++++|++.+
T Consensus 383 ~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 383 TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 46799999999999864322 1123344433333333322333344455555544
No 147
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=48.88 E-value=35 Score=17.00 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 6 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
-+|.++..|...+-..+-....+..+...+ ...+....+...++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREA----IRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHH----HHHHHHhCcCCCCHHHHHHHHHH
Confidence 478888888666554422233333333333 22222111222566777666654
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=48.67 E-value=31 Score=16.45 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
++-.++..++.. .+..++..++..+ ++.-+..+-...+=+.+..+
T Consensus 14 l~d~~m~~if~l-~~~~vs~~el~a~----lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 14 LKDDDMIEIFAL-AGFEVSKAELSAW----LRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred CChHHHHHHHHH-cCCccCHHHHHHH----HCCCCCccccccChHHHHHH
Confidence 344566666665 4777888887776 66644443333333333333
No 149
>KOG0506|consensus
Probab=48.51 E-value=84 Score=21.33 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHhc
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALER 62 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~ 62 (75)
.+.++.-.|..++++. |..-++..+.++++.+-..- ...+.+.++.+-|.+.+..
T Consensus 100 ~ekipihKFiTALkst-GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 100 SEKIPIHKFITALKST-GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred cCcccHHHHHHHHHHc-CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 4889999999999995 88888888777755543332 2334567788888887653
No 150
>KOG3442|consensus
Probab=48.26 E-value=45 Score=18.13 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=32.8
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17264 6 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 51 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 51 (75)
..|.||.+|-..++.- ..++..+++.+--+++|..-|+...|..
T Consensus 52 ~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 3577888887777662 5577888888887888888888766654
No 151
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=47.92 E-value=60 Score=19.43 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=26.9
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
-+++|.+....|..-+.++ ..+++..|+..+
T Consensus 162 G~gegQVpL~kL~~~l~KL-p~~lt~~ev~~v 192 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKL-PRNLTKAEVDAV 192 (224)
T ss_pred cCCCCceeHHHHHHHHHhC-CccCCHHHHHHH
Confidence 3678999999999999995 889999998775
No 152
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=47.90 E-value=41 Score=17.60 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 12 RDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 12 ~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.+|++..+.+. ...+++++++++
T Consensus 81 ~dElrai~~~~-~~~~~~e~l~~I 103 (112)
T PRK14981 81 RDELRAIFAKE-RYTLSPEELDEI 103 (112)
T ss_pred HHHHHHHHHHh-ccCCCHHHHHHH
Confidence 34444444442 444445444444
No 153
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=47.88 E-value=27 Score=17.42 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCCCCcccHHHHHH
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFCK 58 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~ 58 (75)
+..||...+.. ...++..++...++.++..+. ....+.|.+..|-.
T Consensus 2 ~K~eli~~ia~--~~~~s~~~~~~~v~~~~~~i~~~L~~g~~V~i~gfG~ 49 (90)
T PRK10753 2 NKTQLIDVIAD--KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGT 49 (90)
T ss_pred CHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 45677777765 345788887777666666542 23344565555433
No 154
>KOG4004|consensus
Probab=47.40 E-value=13 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 37 ERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 37 ~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.+++...|.+++|.|++.||...+.
T Consensus 225 ~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 225 TRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred hhhhhcccCCCCCceeHHHhhcccC
Confidence 3458899999999999999987653
No 155
>KOG4301|consensus
Probab=46.90 E-value=20 Score=22.94 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=35.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
||+.+.|.++.-..+.++..+.+.++.++. +-+ +.. -.+.+|.+.+..|.+++.
T Consensus 119 ~ds~~~g~~~vfavkialatlc~gk~~dkl-ryI----fs~-isds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 119 EDSEGQGKQQVFAVKIALATLCGGKIKDKL-RYI----FSL-ISDSRGIMQEIQRDQFLH 172 (434)
T ss_pred cCccCCCCceeecchhhhhhhccchHHHHH-HHH----HHH-HccchHHHHHHHHHHHHH
Confidence 688899999988888888876565555432 222 433 455677666665555543
No 156
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=46.81 E-value=21 Score=20.72 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.7
Q ss_pred ccCCCCCccCHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~ 21 (75)
+|.+++|.++.+++......
T Consensus 59 ~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 59 LDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred hhhcccCCCCHHHHHHHHHH
Confidence 57788888888888877665
No 157
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=46.27 E-value=30 Score=16.61 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHH
Q psy17264 11 SRDELLAVLHMM 22 (75)
Q Consensus 11 ~~~el~~~~~~~ 22 (75)
|.+++..+++.+
T Consensus 4 s~eqv~~aFr~l 15 (69)
T PF08726_consen 4 SAEQVEEAFRAL 15 (69)
T ss_dssp TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 345555555553
No 158
>PF13592 HTH_33: Winged helix-turn helix
Probab=45.52 E-value=32 Score=15.63 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.7
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 44 (75)
.+..+..++...+...+|..++...+..+ ++.+.
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v~~l----L~r~G 35 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGVYRL----LKRLG 35 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHHHHH----HHHcC
Confidence 46778888999998877888888888777 66543
No 159
>KOG0998|consensus
Probab=43.88 E-value=7.4 Score=27.44 Aligned_cols=53 Identities=32% Similarity=0.401 Sum_probs=38.6
Q ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 3 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
|.+.+|+|+-.+....+.. ..++...+... |...+....|.+++.+|+-.+..
T Consensus 293 d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 293 DKDNDGSISSNEARNIFLP---FGLSKPRLAHV----WLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred cccCCCccccccccccccc---CCCChhhhhhh----hhhcchhccCcccccccchhhhh
Confidence 5677888887777776654 34555554444 88999999999999988877653
No 160
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=43.86 E-value=74 Score=19.33 Aligned_cols=52 Identities=8% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCccCHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 6 NDDAISRDELLAVLHMMV-GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
-+|.|+..|.. ..+.++ ...++.++.... ..+++. ......++.+|+..+..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a-~~lf~~---~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAA-QQAFRE---GKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHH-HHHHHH---hcccCCCHHHHHHHHHH
Confidence 47888888877 444432 234555553333 222433 23334677777776653
No 161
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=42.00 E-value=44 Score=17.10 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=9.8
Q ss_pred CCccCHHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMM 22 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~ 22 (75)
+|.|+.+||...+...
T Consensus 37 ~~~i~~EeF~~~Lq~~ 52 (92)
T smart00549 37 NGTITAEEFTSRLQEA 52 (92)
T ss_pred hCCCCHHHHHHHHHHH
Confidence 4566666666666553
No 162
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=40.86 E-value=78 Score=18.79 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=15.0
Q ss_pred CCCccCHHHHHHHHHHHh
Q psy17264 6 NDDAISRDELLAVLHMMV 23 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~ 23 (75)
..|.|+.++|+.++..+.
T Consensus 38 k~G~Id~~e~kkav~~li 55 (215)
T PF09873_consen 38 KPGKIDVEEFKKAVYSLI 55 (215)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 469999999999997743
No 163
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=40.43 E-value=52 Score=16.59 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=31.6
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
..||..||....+. .+.+++.++...+ +..+-.+.-...+-++=..+
T Consensus 13 n~iT~~eLlkyskq-y~i~it~~QA~~I----~~~lr~k~inIfn~~~r~~l 59 (85)
T PF11116_consen 13 NNITAKELLKYSKQ-YNISITKKQAEQI----ANILRGKNINIFNEQERKKL 59 (85)
T ss_pred hcCCHHHHHHHHHH-hCCCCCHHHHHHH----HHHHhcCCCCCCCHHHHHHH
Confidence 35889999998888 4999999998877 55554443344444443333
No 164
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=40.40 E-value=33 Score=16.21 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17264 5 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE 42 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (75)
.++..++..++...+....+..++..+++.+++.+-..
T Consensus 9 ~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~ 46 (76)
T PF08479_consen 9 EGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNY 46 (76)
T ss_dssp ES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHH
Confidence 34556777788888887667888888887775554443
No 165
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=39.68 E-value=49 Score=16.08 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q psy17264 12 RDELLAVLHMMVGANISEEQLTSIAERTILEADQN-GDQMISFDEFCKAL 60 (75)
Q Consensus 12 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 60 (75)
..++..++. |..++.+.+.+. +...+.. --+.++.+++++++
T Consensus 44 i~~le~~L~---G~~~~~~~i~~~----l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI---GCPYDREAIKEA----LNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT---TCBSSHHHHHHH----HHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCCCHHHHHHH----HHHhCHhhccccCCHHHHHHhC
Confidence 555666553 788899988887 7776443 34578888888754
No 166
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=39.08 E-value=70 Score=17.69 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ 45 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 45 (75)
.|++++..+...+ ..++|+++++.+ ++.++.
T Consensus 27 WT~eDV~~~a~gm-e~~lTd~E~~aV----L~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGM-EYNLTDDEARAV----LARIGD 57 (139)
T ss_pred ecHHHHHHHHhcC-CCCCCHHHHHHH----HHHHhc
Confidence 4667777776653 667888888777 666554
No 167
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=35.96 E-value=86 Score=17.84 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.1
Q ss_pred CCCCCccCHHHHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHM 21 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~ 21 (75)
.||||++.+-=+..++.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~ 143 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQ 143 (186)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 367777776655555554
No 168
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=35.79 E-value=48 Score=16.97 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=8.3
Q ss_pred CCcccHHHHHHHHhccCc
Q psy17264 48 DQMISFDEFCKALERTDV 65 (75)
Q Consensus 48 ~g~i~~~ef~~~~~~~~~ 65 (75)
+|.++.++|.+.+.....
T Consensus 4 d~~~~~~~F~~~W~sl~~ 21 (114)
T PF09066_consen 4 DGSMDPEEFQEMWKSLPD 21 (114)
T ss_dssp T----HHHHHHHHHHS-G
T ss_pred CCccCHHHHHHHHHhCCc
Confidence 566777777777665433
No 169
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=35.67 E-value=36 Score=13.40 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=5.6
Q ss_pred CCccCHHHHHHH
Q psy17264 7 DDAISRDELLAV 18 (75)
Q Consensus 7 ~G~i~~~el~~~ 18 (75)
+|.||.+||...
T Consensus 14 ~G~IseeEy~~~ 25 (31)
T PF09851_consen 14 KGEISEEEYEQK 25 (31)
T ss_pred cCCCCHHHHHHH
Confidence 344454444443
No 170
>PLN02448 UDP-glycosyltransferase family protein
Probab=35.52 E-value=1.3e+02 Score=19.70 Aligned_cols=55 Identities=11% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCccCHHHHHHHHHHHhCCC-CCHHHH----HHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 7 DDAISRDELLAVLHMMVGAN-ISEEQL----TSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
++.++.+++.++++.++... -..+++ .++.+..-.....++...-++++|+..+.
T Consensus 397 ~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~ 456 (459)
T PLN02448 397 ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDIS 456 (459)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 46789999999999975321 111222 22233334445556666778888887765
No 171
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=35.30 E-value=70 Score=16.64 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTSIAERTIL 41 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (75)
..+||..+.+.++...++....++.+...++
T Consensus 67 ~~~Ef~~~~~eM~dAGV~~~~~~~~l~~~Yk 97 (100)
T PF15652_consen 67 LQEEFNNSYREMFDAGVSKECRKKALKAQYK 97 (100)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3556666666655555666555555333333
No 172
>PF14178 YppF: YppF-like protein
Probab=34.96 E-value=54 Score=15.38 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=12.1
Q ss_pred CCccCHHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMM 22 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~ 22 (75)
.|.|+..+++.+++.+
T Consensus 34 ~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 34 QGEISINEYRNLVREL 49 (60)
T ss_pred hCcccHHHHHHHHHHH
Confidence 3778888888888763
No 173
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=34.77 E-value=26 Score=19.46 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=14.8
Q ss_pred cCCCCCccCHHHHHHHHHH
Q psy17264 3 DLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 3 D~~~~G~i~~~el~~~~~~ 21 (75)
|..+.+|+|..+|+.++-.
T Consensus 79 e~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 79 EEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHhcCCceeHHHHHHHHHH
Confidence 4556678999999998854
No 174
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=34.62 E-value=56 Score=17.73 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=19.5
Q ss_pred CCCCcccHHHHHHHHhccCc------cccceeecc
Q psy17264 46 NGDQMISFDEFCKALERTDV------EQKMSIRFL 74 (75)
Q Consensus 46 ~~~g~i~~~ef~~~~~~~~~------~~~~~~~~~ 74 (75)
|...+.++.+|+..+.+.+. +....+.||
T Consensus 57 NaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~yI 91 (127)
T PF10357_consen 57 NATRWTSLTEFVKYLGREGKCKVDETEKGWFISYI 91 (127)
T ss_dssp GGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEEE-
T ss_pred cccccchHHHHHHHHhhCCeeEeecCCCceEEEee
Confidence 35678899999999987644 444555555
No 175
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=34.46 E-value=57 Score=15.35 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 46 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 46 (75)
+++..+.+-.+..+....++.++..++..++..+...
T Consensus 27 vDW~~~~~~Y~p~v~~~~~~~el~~vl~eMl~eL~~~ 63 (70)
T PF14684_consen 27 VDWDAVYDRYRPLVPAAKTRDELYDVLNEMLGELNDS 63 (70)
T ss_dssp HHHHHHHHHHHGGGGG--SHHHHHHHHHHHHHTT--S
T ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4566666666654455566777777766667666543
No 176
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=34.37 E-value=34 Score=15.86 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=14.8
Q ss_pred HHHhCCCCCCcccHHHHHHH
Q psy17264 40 ILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 40 ~~~~d~~~~g~i~~~ef~~~ 59 (75)
.+.++.+++|+|+...++.+
T Consensus 21 ~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 21 RSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHhcCCCcEeHHHHHch
Confidence 55678888999988865543
No 177
>KOG3449|consensus
Probab=33.65 E-value=80 Score=16.77 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=27.2
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 43 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (75)
.-++...+..+++.++.+ +|.....+.++.+ +..+
T Consensus 12 lgGn~~psa~DikkIl~s-VG~E~d~e~i~~v----isel 46 (112)
T KOG3449|consen 12 LGGNASPSASDIKKILES-VGAEIDDERINLV----LSEL 46 (112)
T ss_pred hcCCCCCCHHHHHHHHHH-hCcccCHHHHHHH----HHHh
Confidence 345666788899999998 4888888888777 6665
No 178
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=33.45 E-value=60 Score=18.29 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=17.5
Q ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17264 9 AISRDELLAVLHMMVGANISEEQLTSIAERTILE 42 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (75)
.++..+|...+. +|..++.++++..+..++..
T Consensus 101 ~~d~~~Fe~~cG--VGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 101 PIDVAEFEKACG--VGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp G--HHHHHHTTT--TT----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcC--CCeEECHHHHHHHHHHHHHH
Confidence 466677777666 37778888888776655554
No 179
>PTZ00315 2'-phosphotransferase; Provisional
Probab=33.41 E-value=1.4e+02 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.|.+|++..+++....... +..++.+.++.+
T Consensus 400 ld~~Gwv~vd~LL~~~~~~-~~~~t~e~i~~V 430 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMR-NDPVSVQDVARV 430 (582)
T ss_pred cCCCCCEEHHHHHHHHHhc-CCCCCHHHHHHH
Confidence 4778999999999888753 566788887776
No 180
>PLN02228 Phosphoinositide phospholipase C
Probab=33.02 E-value=1.6e+02 Score=20.22 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHhcc
Q psy17264 7 DDAISRDELLAVLHMMVGAN--ISEEQLTSIAERTILEADQN----GDQMISFDEFCKALERT 63 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 63 (75)
++.++.++|...+... ... .+.+.+..+ +..+... ..|.++++.|..++...
T Consensus 36 ~~~~t~~~~~~FL~~~-Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 36 NGKMSFDELLRFVSEV-QGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCccCHHHHHHHHHHh-cCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHHhcCc
Confidence 4679999998888773 322 334444555 6665432 34679999999998643
No 181
>PLN02222 phosphoinositide phospholipase C 2
Probab=32.69 E-value=1.7e+02 Score=20.24 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=35.4
Q ss_pred CCccCHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcc
Q psy17264 7 DDAISRDELLAVLHMMVGA--NISEEQLTSIAERTILEADQ-NGDQMISFDEFCKALERT 63 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 63 (75)
++.++.++|...+... .. ..+.+.+..+ +..+.. ...+.++++.|..++...
T Consensus 37 ~~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~i----i~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 37 NGVMTVDHLHRFLIDV-QKQDKATREDAQSI----INSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CCCcCHHHHHHHHHHh-cCCccCCHHHHHHH----HHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4789999999988873 33 2355666666 444321 235679999999998753
No 182
>PLN02534 UDP-glycosyltransferase
Probab=31.99 E-value=1.5e+02 Score=19.77 Aligned_cols=54 Identities=9% Similarity=0.181 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHHhCC-CCCHHHH----HHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 9 AISRDELLAVLHMMVGA-NISEEQL----TSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.++.+++.++++.++.. .-..+++ .++.+..-+....++...-++++|+..+.+
T Consensus 428 ~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 428 LVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred ccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 58999999999986431 1112232 223333444456667778888888887754
No 183
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.96 E-value=77 Score=16.07 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCCCCccCHHHHHHHHHHHh------CC----CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 4 LDNDDAISRDELLAVLHMMV------GA----NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.|++|.++...|...++..+ +. ...+..++.. |... .....|+.+.|+.-+...
T Consensus 13 sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sC----F~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 13 SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSC----FQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHH----HHHT--TT-S-B-HHHHHHHHHT-
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHH----hccc--CCCCccCHHHHHHHHHhC
Confidence 47789999999888887632 22 2234444444 6554 256789999999988643
No 184
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=31.49 E-value=55 Score=14.56 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.4
Q ss_pred CCCccCHHHHHHHHH
Q psy17264 6 NDDAISRDELLAVLH 20 (75)
Q Consensus 6 ~~G~i~~~el~~~~~ 20 (75)
.+|.|+..++++.+.
T Consensus 7 ~~~~itv~~~rd~lg 21 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG 21 (50)
T ss_dssp TTSSBEHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHC
Confidence 478999999999764
No 185
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=31.35 E-value=60 Score=16.82 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.0
Q ss_pred CCccCHHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMM 22 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~ 22 (75)
.|+|+.+|+..++..+
T Consensus 27 ~~~is~~ef~~iI~~I 42 (118)
T PF10256_consen 27 SGYISPEEFEEIINTI 42 (118)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5889999999999884
No 186
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=31.33 E-value=36 Score=18.86 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=10.1
Q ss_pred CCccCHHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHMM 22 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~ 22 (75)
.|.||++||..|=--+
T Consensus 25 tG~iTPeEFV~AGD~L 40 (145)
T PF03986_consen 25 TGVITPEEFVAAGDYL 40 (145)
T ss_dssp HS---HHHHHHHHHHH
T ss_pred cceeCHHHHHHhhhHH
Confidence 5999999999886553
No 187
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.95 E-value=67 Score=19.00 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.1
Q ss_pred CCCcccHHHHHHHHhccCcccccee
Q psy17264 47 GDQMISFDEFCKALERTDVEQKMSI 71 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~~~~~~~~~~~ 71 (75)
++|.+++.++++.+...+..-.+++
T Consensus 229 G~G~id~~~~~~~L~~~gy~G~~~~ 253 (284)
T PRK13210 229 GEGCVDFVGIFKTLKELNYRGPFLI 253 (284)
T ss_pred CCcccCHHHHHHHHHHcCCCceEEE
Confidence 6799999999999987765444443
No 188
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=30.70 E-value=1.1e+02 Score=17.35 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCccCHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 6 NDDAISRDELLAVLHMMVG-----------ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
.+|.|+...|...++..+| ..++.+++..+++.++..+..++... ++|-.++.
T Consensus 96 ~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dt---E~Ye~vwk 159 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDT---EHYEKVWK 159 (175)
T ss_pred cccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCch---HHHHHHHH
Confidence 4788999888887765333 35678889999999998876654433 44444443
No 189
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=30.40 E-value=44 Score=14.05 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=9.8
Q ss_pred CCccCHHHHHHHH
Q psy17264 7 DDAISRDELLAVL 19 (75)
Q Consensus 7 ~G~i~~~el~~~~ 19 (75)
-|.||.+++..+.
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 5788888887753
No 190
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=30.19 E-value=1e+02 Score=16.87 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=25.4
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 43 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (75)
.|.++.++|.+.+... ..++..++..+++.+...+
T Consensus 28 ~~~mt~~el~~~Ia~~--s~~s~~dv~~vl~~l~~~i 62 (145)
T TIGR01201 28 SGVIDFEEIAELIAEE--SSLSPGDVKGIIDRLAYVL 62 (145)
T ss_pred CCCcCHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 5679999999998863 4578888777655555443
No 191
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=30.18 E-value=83 Score=15.88 Aligned_cols=24 Identities=4% Similarity=0.237 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 12 RDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 12 ~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.+.|++.+..+....++.++++..
T Consensus 47 Ae~Fr~~V~~li~~~Pt~EevDdf 70 (85)
T PF12091_consen 47 AEMFREDVQALIASEPTQEEVDDF 70 (85)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456778888766677888888776
No 192
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=30.16 E-value=1.6e+02 Score=19.32 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=31.5
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHH----HHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTS----IAERTILEADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~ 61 (75)
+.++.+++.++++.++... ..+++++ +.+.+-+....++...-++++|+..+.
T Consensus 393 ~~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 393 GDLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred CcccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4678899999999865432 2233332 223334444555666667777877654
No 193
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=30.16 E-value=48 Score=14.02 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.6
Q ss_pred CCCCccCHHHHHHHHHH
Q psy17264 5 DNDDAISRDELLAVLHM 21 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~ 21 (75)
.+.|-++.+++++.+.+
T Consensus 9 ~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 9 QQQGPFSLEELRQLISS 25 (45)
T ss_pred eEECCcCHHHHHHHHHc
Confidence 44677888888887775
No 194
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=29.71 E-value=61 Score=15.83 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.2
Q ss_pred hCCCCCCcccHHHHHHHHh
Q psy17264 43 ADQNGDQMISFDEFCKALE 61 (75)
Q Consensus 43 ~d~~~~g~i~~~ef~~~~~ 61 (75)
...+..|.|+++.|+..+.
T Consensus 11 ~~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWS 29 (76)
T ss_pred eEEcCCCcCcHHHHHHHHH
Confidence 3457889999999998764
No 195
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.44 E-value=1.4e+02 Score=18.39 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=29.1
Q ss_pred CCCccCHHHHHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHhC
Q psy17264 6 NDDAISRDELLAVLHMMVG---------------ANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d 44 (75)
.+|.|+.+.+...+..+.. ..++.+|..++++.+.+..+
T Consensus 22 ~~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 75 (309)
T cd00952 22 ATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA 75 (309)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC
Confidence 3699999999998887431 24688898888777666654
No 196
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=29.14 E-value=28 Score=19.21 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=28.2
Q ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 9 AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.||..|++.|+... ...++..- ....-.+.+..|+++-....+...
T Consensus 9 ~vTldevr~Av~~f-~~~lp~gi--------~rt~lv~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 9 DVTLDEVRRAVHQF-EEDLPKGI--------NRTILVNDDQSIDFERLAPYLGGI 54 (140)
T ss_pred cccHHHHHHHHHHH-HHhCccCC--------ceEEEEcCCceecHHHHhhhcCCC
Confidence 47888888888874 43333322 223334567778887777766543
No 197
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=29.12 E-value=1.1e+02 Score=17.10 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHH-hCCCCCCcccHHHHHHHHhcc
Q psy17264 15 LLAVLHMMVGANISEEQLTSIAERTILE-ADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~g~i~~~ef~~~~~~~ 63 (75)
..-++... ....+++++++++..++.. +|.+.+..+ -..|...+.+.
T Consensus 19 ~~p~le~~-~~~~~~e~Lremfa~LLass~d~~~~~~~-hp~fv~Ii~qL 66 (186)
T PF14337_consen 19 AGPALEAA-SYEIDDEELREMFANLLASSMDKRKNDDV-HPSFVEIIKQL 66 (186)
T ss_pred hHHHHHhc-cCcCCcHHHHHHHHHHHHHHhCcCccccc-cHHHHHHHHhC
Confidence 34445542 5556888898887766655 555544333 34477766554
No 198
>KOG2243|consensus
Probab=28.50 E-value=53 Score=25.88 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhcc
Q psy17264 39 TILEADQNGDQMISFDEFCKALERT 63 (75)
Q Consensus 39 ~~~~~d~~~~g~i~~~ef~~~~~~~ 63 (75)
.++.+|+++.|.|+..+|.+.|...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~ 4086 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH 4086 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc
Confidence 3778899999999999999998643
No 199
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.41 E-value=88 Score=16.15 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=7.7
Q ss_pred CCccCHHHHHHHHHH
Q psy17264 7 DDAISRDELLAVLHM 21 (75)
Q Consensus 7 ~G~i~~~el~~~~~~ 21 (75)
+|.|+.+||...+..
T Consensus 38 ~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQE 52 (96)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 355555555555554
No 200
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.19 E-value=13 Score=14.92 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHhCCCCCCcccHH
Q psy17264 39 TILEADQNGDQMISFD 54 (75)
Q Consensus 39 ~~~~~d~~~~g~i~~~ 54 (75)
++..-|.+++-+|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 3666788888777654
No 201
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=28.19 E-value=1.1e+02 Score=16.78 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 46 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 46 (75)
.+.|+.+-|+..|+..+...++++-.+.+ |..+-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hL----F~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHL----FLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHH----HHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHH----HHHHhCc
Confidence 45899999999999977777666655555 7776543
No 202
>PLN02230 phosphoinositide phospholipase C 4
Probab=27.76 E-value=2.1e+02 Score=19.87 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=37.3
Q ss_pred CCCccCHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDELLAVLHMMVGA---NISEEQLTSIAERTILEAD---QNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~~~~~ 63 (75)
+++.++.++|...+..- .. ..+.+++..+++.+..... .-..+.++++.|..++...
T Consensus 41 ~~~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 41 GDAHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCCccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 34789999999999873 42 2355666666444443322 2234579999999988653
No 203
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.74 E-value=90 Score=15.53 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHhccCccccce
Q psy17264 7 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD-----QMISFDEFCKALERTDVEQKMS 70 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----g~i~~~ef~~~~~~~~~~~~~~ 70 (75)
+..+++.+|...+...++.. .+. ++.+|-+++ -..+++|.+.+..+.+...+|.
T Consensus 19 ~~~~~~~~L~~ev~~rf~l~----~f~------lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~ 77 (81)
T cd06396 19 SENTTWASVEAMVKVSFGLN----DIQ------IKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMN 77 (81)
T ss_pred CCCCCHHHHHHHHHHHhCCC----cce------eEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEE
Confidence 34567889999888755533 211 666776655 2446777777776665444443
No 204
>PHA02105 hypothetical protein
Probab=27.29 E-value=80 Score=14.77 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHh
Q psy17264 9 AISRDELLAVLHMMV--GANISEEQLTSIAERTILEADQNG--DQMISFDEFCKALE 61 (75)
Q Consensus 9 ~i~~~el~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~ 61 (75)
++++++++.+...-- ..++..+.+.++ -..+...+ --.++|+||-.++.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql----~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQL----KTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHH----HHhccccceEEEEEeHHHhccccc
Confidence 478889988877510 123344444443 44444433 34679999988764
No 205
>PLN02952 phosphoinositide phospholipase C
Probab=27.26 E-value=2.2e+02 Score=19.82 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCCccCHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHhcc
Q psy17264 6 NDDAISRDELLAVLHMMVGA--NISEEQLTSIAERTILEAD---QNGDQMISFDEFCKALERT 63 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~~~~~ 63 (75)
+.+.++.++|...+... .. ..+.+++..+++.++.... ......++++.|..++...
T Consensus 50 ~~~~mt~~~l~~FL~~~-Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 50 GGGHMGADQLRRFLVLH-QDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred CCCccCHHHHHHHHHHh-CCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCc
Confidence 44689999999999873 33 2456666666555444322 1233468999999998743
No 206
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=27.24 E-value=55 Score=17.67 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHhccCccc
Q psy17264 47 GDQMISFDEFCKALERTDVEQ 67 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~~~~~~~ 67 (75)
..|..+|..|++-+.+.++..
T Consensus 80 q~Gqtdf~tfC~~~A~AGI~k 100 (125)
T PF07166_consen 80 QQGQTDFETFCKDAAKAGIFK 100 (125)
T ss_dssp HHT---HHHHHHHHHHTT--E
T ss_pred HcCCccHHHHHHHHHhcCCEE
Confidence 578999999999998877643
No 207
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=27.03 E-value=36 Score=21.99 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.9
Q ss_pred ccCCCCCccCHHHHHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHM 21 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~ 21 (75)
..++.+|.|+.++|+.+++.
T Consensus 121 l~V~~~G~v~~e~L~~al~~ 140 (386)
T COG1104 121 LPVDSNGLVDLEQLEEALRP 140 (386)
T ss_pred eCCCCCCeEcHHHHHHhcCC
Confidence 35688999999999999964
No 208
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=27.01 E-value=1.1e+02 Score=16.19 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Q psy17264 14 ELLAVLHMMVGANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 14 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 44 (75)
=++..++.+++...+.++.+.+.+.++.+++
T Consensus 90 Lvk~~iRhiL~~~a~~e~~EAi~D~V~NEf~ 120 (121)
T PF06919_consen 90 LVKTYIRHILGNKAKPEHLEAIFDVVLNEFD 120 (121)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhhcc
Confidence 3455666666778888888888777776664
No 209
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=26.72 E-value=76 Score=14.36 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 12 RDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 12 ~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
++++...+...+...++.+++..+
T Consensus 2 ~~~~~~~~~~~y~~~ft~~El~~i 25 (64)
T PF09832_consen 2 PEKMIDQMAPIYAEHFTEEELDAI 25 (64)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHH
Confidence 445555555544556777777665
No 210
>PLN02562 UDP-glycosyltransferase
Probab=26.64 E-value=1.9e+02 Score=18.94 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 10 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 10 i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
++.+++.++++.++...--.+...++.+.+.+. ...+...-++++|++.+
T Consensus 398 ~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 398 FGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 678889998888643211111222222222222 22244455666666543
No 211
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.62 E-value=1.3e+02 Score=16.88 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 44 (75)
+++|+-+.+++.+. .++++++++.++..=..++
T Consensus 2 ~k~efL~~L~~~L~-~lp~~e~~e~l~~Y~e~f~ 34 (181)
T PF08006_consen 2 NKNEFLNELEKYLK-KLPEEEREEILEYYEEYFD 34 (181)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 45677777776433 5777777776444444443
No 212
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=26.45 E-value=49 Score=16.68 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCCCCcccHHHHHHHHhccCc
Q psy17264 44 DQNGDQMISFDEFCKALERTDV 65 (75)
Q Consensus 44 d~~~~g~i~~~ef~~~~~~~~~ 65 (75)
...+.++|+.++|.=++.+...
T Consensus 48 ~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 48 QRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp ----------------------
T ss_pred hccccCcCcHHHHHHHHhcCHH
Confidence 3456689999999888876543
No 213
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=25.83 E-value=1.1e+02 Score=15.76 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 12 RDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 12 ~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.+.+..+...+....+++.++-++
T Consensus 56 ~e~~~~l~~~L~~~~L~~~E~~qi 79 (117)
T PF03874_consen 56 PESIKELREELKKFGLTEFEILQI 79 (117)
T ss_dssp HHHHHHHHHHHTTSTS-HHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHH
Confidence 344444444432334555554443
No 214
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=25.83 E-value=1.2e+02 Score=16.39 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=31.8
Q ss_pred CCCccCHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q psy17264 6 NDDAISRDELLAVLHMMVG--------ANISEEQLTSIAERTILEADQNGDQ-MISFDEFCKA 59 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 59 (75)
++..||.+||.+.+..--+ ..++.++++.+ .+.+...+.+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~----~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRA----LAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHH----HHHHHhccccCCCCHHHHHHH
Confidence 4567888888888875110 12467777776 6666554444 4888877664
No 215
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=25.79 E-value=1.3e+02 Score=16.58 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=4.5
Q ss_pred ccHHHHHHHH
Q psy17264 51 ISFDEFCKAL 60 (75)
Q Consensus 51 i~~~ef~~~~ 60 (75)
|+-+|...++
T Consensus 106 Vs~~El~d~l 115 (145)
T PF13623_consen 106 VSDDELQDML 115 (145)
T ss_pred cCHHHHHHHH
Confidence 4444444444
No 216
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=25.76 E-value=79 Score=14.22 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=10.3
Q ss_pred CCCcccHHHHHHHHh
Q psy17264 47 GDQMISFDEFCKALE 61 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~ 61 (75)
.+|.|+..||-.-+.
T Consensus 20 a~GrL~~~Ef~~R~~ 34 (53)
T PF08044_consen 20 AEGRLSLDEFDERLD 34 (53)
T ss_pred HCCCCCHHHHHHHHH
Confidence 367888888866543
No 217
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=25.67 E-value=81 Score=14.30 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.0
Q ss_pred HHHHHHHHH
Q psy17264 13 DELLAVLHM 21 (75)
Q Consensus 13 ~el~~~~~~ 21 (75)
++....+-.
T Consensus 16 n~~a~~Iw~ 24 (68)
T PF05402_consen 16 NETAAFIWE 24 (68)
T ss_dssp -THHHHHHH
T ss_pred cHHHHHHHH
Confidence 333333333
No 218
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.48 E-value=1.2e+02 Score=16.20 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17264 11 SRDELLAVLHMMVGANISEEQLTSIAER 38 (75)
Q Consensus 11 ~~~el~~~~~~~~~~~~~~~~~~~~~~~ 38 (75)
|..|++.++.+- +..+++++++++++.
T Consensus 81 t~~ElRsIla~e-~~~~s~E~l~~Ildi 107 (114)
T COG1460 81 TPDELRSILAKE-RVMLSDEELDKILDI 107 (114)
T ss_pred CHHHHHHHHHHc-cCCCCHHHHHHHHHH
Confidence 345555555552 555566666665333
No 219
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=25.32 E-value=1.4e+02 Score=17.05 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
.|.+|+++ .++..+...+ + .+.+++..+++ +++.+++-|=|-=++.|.+-+
T Consensus 45 LD~~GyL~-~~~~eia~~l-~--~~~~~v~~~l~-~lQ~leP~GigAr~l~EcLll 95 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEEL-G--VSEEEVEKALE-LLQSLEPAGIGARDLQECLLL 95 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHC-T--S-HHHHHHHHH-HHHTTSS--TTTS-TTHHHHH
T ss_pred CCCCCccC-CCHHHHHHHh-C--CCHHHHHHHHH-HHHcCCCCccCcCCHHHHHHH
Confidence 46788888 3355555553 3 77777766543 356788877777777776554
No 220
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=25.20 E-value=93 Score=14.83 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Q psy17264 13 DELLAVLHMMVGANISEEQLTSIAERTILEADQN 46 (75)
Q Consensus 13 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 46 (75)
..+..++..+-...++...+...+..+++.++.+
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~n 42 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGN 42 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 4455556554345688888888888889999765
No 221
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=25.13 E-value=2.1e+02 Score=18.92 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHHHhCCCCCCcccHHHHHHH
Q psy17264 6 NDDAISRDELLAVLHMMVGANISEEQLTSI----AERTILEADQNGDQMISFDEFCKA 59 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~ 59 (75)
.++.++.+++.++++.++. .. ..+++.- .+..-+.....+...-++++|++.
T Consensus 398 ~~~~~~~e~l~~av~~vm~-~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~ 453 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVME-EK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKT 453 (455)
T ss_pred cCCcCcHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3457899999999998653 21 2222222 122233344445555556666554
No 222
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=24.99 E-value=85 Score=15.82 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=14.1
Q ss_pred cccHHHHHHHHhcc-Cccccceeecc
Q psy17264 50 MISFDEFCKALERT-DVEQKMSIRFL 74 (75)
Q Consensus 50 ~i~~~ef~~~~~~~-~~~~~~~~~~~ 74 (75)
.|+|++|..-+... .....+.+.|.
T Consensus 21 ~i~f~dL~~kIrdkf~~~~~~~iKyk 46 (86)
T cd06408 21 DTGFADFEDKIRDKFGFKRRLKIKMK 46 (86)
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEE
Confidence 46677777666532 44455555553
No 223
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=24.93 E-value=87 Score=14.41 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 27 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 27 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
+.-.++.....+....++...-|.-++.+|+..+..
T Consensus 24 v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~ 59 (74)
T PF12872_consen 24 VSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPD 59 (74)
T ss_dssp EEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TT
T ss_pred EEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCC
Confidence 455555544444456678888899999999976443
No 224
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.69 E-value=82 Score=14.84 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=11.9
Q ss_pred CCcccHHHHHHHHhcc
Q psy17264 48 DQMISFDEFCKALERT 63 (75)
Q Consensus 48 ~g~i~~~ef~~~~~~~ 63 (75)
+|.|+++.|++.+...
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6789999999987643
No 225
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=24.33 E-value=98 Score=15.15 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=13.9
Q ss_pred CCccCHHHHHHHHHHHhCCCC
Q psy17264 7 DDAISRDELLAVLHMMVGANI 27 (75)
Q Consensus 7 ~G~i~~~el~~~~~~~~~~~~ 27 (75)
.|.|+..++..++...++.+.
T Consensus 4 ~g~ise~~l~~~la~~~~l~~ 24 (109)
T PF05157_consen 4 LGLISEDQLLEALAEQLGLPF 24 (109)
T ss_dssp TT-S-HHHHHHHHHHHHT--B
T ss_pred CCCCCHHHHHHHHHHHhCCCe
Confidence 689999999999988655543
No 226
>KOG0998|consensus
Probab=24.21 E-value=48 Score=23.70 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=40.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.|+.+.|.|+..+-...+.. ..+.....-++ |...|..+.|.++.++|...+.-
T Consensus 20 ~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~qi----ws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 20 ADPQGDGRITGAEAVAFLSK---SGLPDQVLGQI----WSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred cCcccCCcccHHHhhhhhhc---cccchhhhhcc----ccccccccCCccccccccccchH
Confidence 46788999998887776664 34555554454 88888888899999998877653
No 227
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=24.09 E-value=1.3e+02 Score=16.00 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=24.1
Q ss_pred CCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17264 6 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 43 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (75)
++..+|.+++..++.. .+.......+..+ ++.+
T Consensus 16 G~~~pTaddI~kIL~A-aGveVd~~~~~l~----~~~L 48 (112)
T PTZ00373 16 GNENPTKKEVKNVLSA-VNADVEDDVLDNF----FKSL 48 (112)
T ss_pred CCCCCCHHHHHHHHHH-cCCCccHHHHHHH----HHHH
Confidence 4556888999999988 4877777766655 5555
No 228
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=23.75 E-value=1.7e+02 Score=18.67 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=21.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHH
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVGANISEEQLTS 34 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~ 34 (75)
|.+.++|.++..++.+.+-+ .+.+.+++.+
T Consensus 211 fspersG~lP~~dlv~lcfS---gk~t~~El~k 240 (358)
T COG3426 211 FSPERSGTLPTGDLVRLCFS---GKYTEEELLK 240 (358)
T ss_pred CCcccCCCCChHHHHHHHhc---CcccHHHHHH
Confidence 34667899999998887664 4567766543
No 229
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=23.74 E-value=1.4e+02 Score=16.31 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=12.8
Q ss_pred CCcccHHHHHHHHhcc
Q psy17264 48 DQMISFDEFCKALERT 63 (75)
Q Consensus 48 ~g~i~~~ef~~~~~~~ 63 (75)
+|.|+..||+..+.+.
T Consensus 42 ng~IsVreFVr~La~S 57 (131)
T PF00427_consen 42 NGQISVREFVRALAKS 57 (131)
T ss_dssp TTSS-HHHHHHHHHTS
T ss_pred cCCCcHHHHHHHHHcC
Confidence 7889999999988754
No 230
>PLN03015 UDP-glucosyl transferase
Probab=23.67 E-value=2.3e+02 Score=18.89 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCCccCHHHHHHHHHHHhCC-CCCHHHHH----HHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 6 NDDAISRDELLAVLHMMVGA-NISEEQLT----SIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
..|.++.+++..+++.++.. .-..++++ ++-+..-+....++...-++++|++.+
T Consensus 407 ~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 407 SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 34679999999999997531 11222332 222333444455556566666666554
No 231
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.59 E-value=1.2e+02 Score=18.07 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=17.9
Q ss_pred CCCcccHHHHHHHHhccCccccce
Q psy17264 47 GDQMISFDEFCKALERTDVEQKMS 70 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~~~~~~~~~~ 70 (75)
++|.+++.++++.+.+.+..-.++
T Consensus 228 G~G~id~~~i~~~L~~~gy~g~~~ 251 (283)
T PRK13209 228 GEGVVDFERCFKTLKQSGYCGPYL 251 (283)
T ss_pred CCCccCHHHHHHHHHHcCCCceEE
Confidence 679999999999988765543333
No 232
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=23.26 E-value=1.4e+02 Score=19.07 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=17.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHhC
Q psy17264 2 YDLDNDDAISRDELLAVLHMMVG 24 (75)
Q Consensus 2 ~D~~~~G~i~~~el~~~~~~~~~ 24 (75)
+++++|.-+|.+++...++..+|
T Consensus 169 ln~nRNP~ls~~eIe~~Lk~~LG 191 (357)
T TIGR03380 169 LSEGRNPHLTKEQIEEKLKDYLG 191 (357)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHC
Confidence 45677777888888888887554
No 233
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=23.06 E-value=56 Score=16.25 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.4
Q ss_pred CCCccCHHHHHHHHHH
Q psy17264 6 NDDAISRDELLAVLHM 21 (75)
Q Consensus 6 ~~G~i~~~el~~~~~~ 21 (75)
.+|.++..|...+...
T Consensus 15 aDG~v~~~E~~~i~~~ 30 (111)
T cd07176 15 ADGDIDDAELQAIEAL 30 (111)
T ss_pred hccCCCHHHHHHHHHH
Confidence 3688888887776665
No 234
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.96 E-value=73 Score=12.80 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=12.7
Q ss_pred ccCHHHHHHHHHHHhCCCCC
Q psy17264 9 AISRDELLAVLHMMVGANIS 28 (75)
Q Consensus 9 ~i~~~el~~~~~~~~~~~~~ 28 (75)
.++..+++..+++. |.+.+
T Consensus 3 ~l~v~eLk~~l~~~-gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKER-GLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHT-TS-ST
T ss_pred cCcHHHHHHHHHHC-CCCCC
Confidence 45678888888884 65443
No 235
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.67 E-value=1.9e+02 Score=17.61 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCCCccCHHHHHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHhC
Q psy17264 5 DNDDAISRDELLAVLHMMVG---------------ANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d 44 (75)
+.+|.|+.+.++..+..+.. ..++.+|..++++.+.+...
T Consensus 18 ~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 72 (296)
T TIGR03249 18 DADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK 72 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45789999999998887431 24688888888776666643
No 236
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=22.41 E-value=1.9e+02 Score=17.31 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=32.4
Q ss_pred CccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy17264 8 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 51 (75)
Q Consensus 8 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 51 (75)
+-+++..+++-++..+....+..+...++..++..+...+.+..
T Consensus 23 ~g~dW~~~~~~y~~~~~~~~~~~e~~~~l~~ml~~L~d~H~~~~ 66 (266)
T cd07562 23 HGVDWDAVRAEYRPLLPRAATRAELADVLNEMLGELNDSHTGVS 66 (266)
T ss_pred CCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcCCccchH
Confidence 44888888887776556667788888888888888866665543
No 237
>KOG2278|consensus
Probab=22.37 E-value=1.4e+02 Score=17.46 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCCCccCHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 35 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~ 35 (75)
.+++|++..+++...-+.- +.+-+-++++.+
T Consensus 29 m~~dGfvpv~~lL~lnq~r-~~~~t~ddi~ri 59 (207)
T KOG2278|consen 29 MRGDGFVPVEDLLNLNQFR-GANHTIDDIRRI 59 (207)
T ss_pred ccCCCceEHHHHhccchhc-ccCCcHHHHHHH
Confidence 4678999988887755542 556667776665
No 238
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.33 E-value=1.9e+02 Score=17.43 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCCccCHHHHHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHhCC
Q psy17264 5 DNDDAISRDELLAVLHMMV---------------GANISEEQLTSIAERTILEADQ 45 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~d~ 45 (75)
+.+|.|+.+.+++.++.+. ...++.+|..++++.+......
T Consensus 14 ~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~ 69 (289)
T PF00701_consen 14 NADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG 69 (289)
T ss_dssp ETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC
Confidence 4578999999999888643 1246788888887777776643
No 239
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=22.16 E-value=25 Score=18.30 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=10.0
Q ss_pred ccCCCCCccCHHH
Q psy17264 2 YDLDNDDAISRDE 14 (75)
Q Consensus 2 ~D~~~~G~i~~~e 14 (75)
+|.|+||.++...
T Consensus 61 hD~N~NgklD~n~ 73 (112)
T PF09912_consen 61 HDENGNGKLDTNF 73 (112)
T ss_pred EeCCCCCcCCcCC
Confidence 6888888888653
No 240
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=22.02 E-value=66 Score=15.07 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.2
Q ss_pred ccCCCCCcc
Q psy17264 2 YDLDNDDAI 10 (75)
Q Consensus 2 ~D~~~~G~i 10 (75)
||++..|.|
T Consensus 29 Fd~~~~~~v 37 (64)
T PF06902_consen 29 FDQDDEPWV 37 (64)
T ss_pred ccCCCCCcC
Confidence 444444444
No 241
>KOG3332|consensus
Probab=21.93 E-value=1.1e+02 Score=18.60 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.1
Q ss_pred CCCCCccCHHHHHHHHHHHhCCC
Q psy17264 4 LDNDDAISRDELLAVLHMMVGAN 26 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~~~~~~ 26 (75)
.++-|++-.+||.+++..+ +.+
T Consensus 78 ~dg~G~iR~kEL~ra~~~l-gi~ 99 (247)
T KOG3332|consen 78 ADGLGKIREKELHRACAVL-GIP 99 (247)
T ss_pred ccccchHHHHHHHHHHHHH-CCc
Confidence 4678999999999999885 654
No 242
>KOG4286|consensus
Probab=21.44 E-value=77 Score=22.75 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=28.3
Q ss_pred CccCCCCCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Q psy17264 1 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 46 (75)
Q Consensus 1 ~~D~~~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 46 (75)
|||+.++|.|..-+|+-.+-.+ ...+.++..+-+ |+....+
T Consensus 478 vyD~~R~g~irvls~ki~~i~l-ck~~leek~~yl----F~~vA~~ 518 (966)
T KOG4286|consen 478 VYDTGRTGRIRVLSFKIGIISL-CKAHLEDKYRYL----FKQVASS 518 (966)
T ss_pred hcccCCCcceEEeeehhhHHHH-hcchhHHHHHHH----HHHHcCc
Confidence 6899999999999999888875 333444444444 6665443
No 243
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.78 E-value=2e+02 Score=17.15 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCCccCHHHHHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHhC
Q psy17264 5 DNDDAISRDELLAVLHMMVG---------------ANISEEQLTSIAERTILEAD 44 (75)
Q Consensus 5 ~~~G~i~~~el~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d 44 (75)
+.+|.|+.+.+++.+..+.. ..++.+|..++++.+.+...
T Consensus 10 ~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~ 64 (281)
T cd00408 10 TADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA 64 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC
Confidence 46789999999998887431 24678888888777777654
No 244
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.73 E-value=1.2e+02 Score=16.01 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.4
Q ss_pred CCCCCccCHHHHHHHHHH
Q psy17264 4 LDNDDAISRDELLAVLHM 21 (75)
Q Consensus 4 ~~~~G~i~~~el~~~~~~ 21 (75)
.|-+|+++-+++..++..
T Consensus 5 iDtSGSis~~~l~~fl~e 22 (126)
T PF09967_consen 5 IDTSGSISDEELRRFLSE 22 (126)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 367899999888888765
No 245
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.68 E-value=1.3e+02 Score=17.88 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=18.2
Q ss_pred CCCcccHHHHHHHHhccCccccce
Q psy17264 47 GDQMISFDEFCKALERTDVEQKMS 70 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~~~~~~~~~~ 70 (75)
++|.++|..+++.+...+..-.++
T Consensus 223 G~G~id~~~~~~aL~~~gy~G~l~ 246 (279)
T TIGR00542 223 GEGCVDFERCFKTLKQLNYRGPFL 246 (279)
T ss_pred CCCccCHHHHHHHHHHhCCceeEE
Confidence 778999999999988765543333
No 246
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=20.57 E-value=1.2e+02 Score=14.57 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q psy17264 10 ISRDELLAVLHMMVG---ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 62 (75)
Q Consensus 10 i~~~el~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 62 (75)
.+.+.+..++... . ...+......++..+...+...+...|+-++...++..
T Consensus 13 F~~~KI~~~i~~a-~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~ 67 (90)
T PF03477_consen 13 FDREKIVRAIEKA-CEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVEN 67 (90)
T ss_dssp S-HHHHHHHHHTT-CTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHH
T ss_pred ecHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHH
Confidence 3455566666653 2 23455566667666677665544457787777766554
No 247
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=20.34 E-value=98 Score=13.29 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17264 13 DELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 60 (75)
Q Consensus 13 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 60 (75)
+|...++.+ ..++..++...+..+.. ...++.++.++..
T Consensus 4 ~d~~~AL~~---LGy~~~e~~~av~~~~~------~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALIS---LGYSKAEAQKAVSKLLE------KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHH---TTS-HHHHHHHHHHHHH------STTS-HHHHHHHH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHhhc------CCCCCHHHHHHHH
Confidence 455566665 35888888887444333 3334566665543
No 248
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=20.30 E-value=1.6e+02 Score=15.68 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCc
Q psy17264 24 GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 65 (75)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 65 (75)
|...+++++...+..+.. +.. +|..+-+.|..++...+.
T Consensus 97 gi~vsd~ev~~~i~~~~~-f~~--~g~~~~~~f~~~L~~~g~ 135 (154)
T PF13624_consen 97 GISVSDAEVDDAIKQIPA-FQE--NGKFDKEAFEEFLKQQGM 135 (154)
T ss_dssp T----HHHHHHHHHH--H-HHH--H----HHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHH-HHH--CCCCCHHHHHHHHHHhhc
Confidence 667777777766333211 111 355666677777665433
No 249
>PHA01632 hypothetical protein
Probab=20.20 E-value=1.2e+02 Score=14.11 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy17264 24 GANISEEQLTSIAERTILE 42 (75)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (75)
...++++++++.+..+++.
T Consensus 25 p~kpteeelrkvlpkilkd 43 (64)
T PHA01632 25 PQKPTEEELRKVLPKILKD 43 (64)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6678899988886665554
No 250
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.10 E-value=1.6e+02 Score=17.36 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=17.9
Q ss_pred CCCcccHHHHHHHHhccCccccce
Q psy17264 47 GDQMISFDEFCKALERTDVEQKMS 70 (75)
Q Consensus 47 ~~g~i~~~ef~~~~~~~~~~~~~~ 70 (75)
++|.|++.++++.+.+.+..-.+.
T Consensus 222 G~G~id~~~i~~~L~~~gy~g~~~ 245 (275)
T PRK09856 222 GEGKMPLRELMRDIIDRGYEGYCT 245 (275)
T ss_pred CCCCCCHHHHHHHHHHcCCCceEE
Confidence 668999999999998765543333
Done!