Query psy17265
Match_columns 161
No_of_seqs 142 out of 1698
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:33:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.7 5E-16 1.1E-20 111.3 10.4 97 47-149 51-157 (160)
2 KOG0034|consensus 99.6 3.7E-15 7.9E-20 109.9 10.6 103 56-158 70-186 (187)
3 KOG0027|consensus 99.6 5.9E-15 1.3E-19 105.7 10.6 97 47-148 39-149 (151)
4 PF13499 EF-hand_7: EF-hand do 99.5 7.1E-14 1.5E-18 86.3 8.3 66 80-146 1-66 (66)
5 KOG0044|consensus 99.5 3.4E-13 7.4E-18 99.7 8.2 99 51-149 62-176 (193)
6 KOG0037|consensus 99.4 2E-12 4.2E-17 96.0 10.4 97 49-150 91-190 (221)
7 cd05022 S-100A13 S-100A13: S-1 99.4 1.1E-12 2.4E-17 85.9 7.6 70 79-152 8-79 (89)
8 PTZ00183 centrin; Provisional 99.4 3.4E-12 7.4E-17 91.0 10.9 97 48-149 49-155 (158)
9 PTZ00184 calmodulin; Provision 99.4 7.2E-12 1.6E-16 88.2 11.4 96 48-148 43-148 (149)
10 KOG0028|consensus 99.4 4.3E-12 9.3E-17 90.0 9.6 98 47-149 64-171 (172)
11 cd05027 S-100B S-100B: S-100B 99.3 1.4E-11 3E-16 80.6 8.7 68 79-151 8-82 (88)
12 KOG0031|consensus 99.3 6.5E-11 1.4E-15 83.5 10.0 92 49-149 65-166 (171)
13 KOG0036|consensus 99.2 8.1E-11 1.7E-15 94.6 9.4 108 49-161 48-162 (463)
14 KOG0038|consensus 99.2 2E-10 4.4E-15 80.5 10.2 93 57-149 76-178 (189)
15 cd05031 S-100A10_like S-100A10 99.2 9E-11 2E-15 77.6 7.8 71 78-152 7-83 (94)
16 KOG0030|consensus 99.2 1.4E-10 3E-15 80.5 8.7 96 47-148 42-151 (152)
17 cd05029 S-100A6 S-100A6: S-100 99.2 1.7E-10 3.7E-15 75.4 8.4 69 79-151 10-82 (88)
18 cd05026 S-100Z S-100Z: S-100Z 99.2 2.2E-10 4.7E-15 75.7 8.6 69 79-151 10-84 (93)
19 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.7E-15 75.0 8.6 69 78-150 8-82 (92)
20 cd00213 S-100 S-100: S-100 dom 99.1 4.7E-10 1E-14 73.1 7.7 69 79-151 8-82 (88)
21 cd00052 EH Eps15 homology doma 99.1 5.5E-10 1.2E-14 68.6 7.0 61 82-149 2-62 (67)
22 KOG0027|consensus 99.1 7.1E-10 1.5E-14 79.3 8.2 67 79-150 8-74 (151)
23 smart00027 EH Eps15 homology d 99.1 1.1E-09 2.5E-14 72.5 8.3 64 79-149 10-73 (96)
24 PF13833 EF-hand_8: EF-hand do 99.1 1E-09 2.2E-14 65.0 6.8 52 92-148 1-53 (54)
25 cd05023 S-100A11 S-100A11: S-1 99.0 2.7E-09 5.9E-14 69.9 8.5 69 79-151 9-83 (89)
26 cd00051 EFh EF-hand, calcium b 99.0 3E-09 6.4E-14 63.2 7.2 61 81-146 2-62 (63)
27 cd00252 SPARC_EC SPARC_EC; ext 98.9 1E-08 2.2E-13 70.3 7.7 64 76-148 45-108 (116)
28 PTZ00183 centrin; Provisional 98.9 3.7E-08 8.1E-13 70.0 11.0 94 52-149 17-119 (158)
29 COG5126 FRQ1 Ca2+-binding prot 98.9 9.8E-09 2.1E-13 73.8 7.7 92 52-148 20-120 (160)
30 cd05030 calgranulins Calgranul 98.9 1.3E-08 2.9E-13 66.4 7.3 69 79-151 8-82 (88)
31 PF14658 EF-hand_9: EF-hand do 98.8 1.7E-08 3.8E-13 61.8 7.0 62 83-149 2-65 (66)
32 KOG0044|consensus 98.8 1.1E-08 2.3E-13 75.9 7.1 95 50-149 24-129 (193)
33 KOG0041|consensus 98.8 2.3E-08 5E-13 73.7 7.7 67 77-148 97-163 (244)
34 PTZ00184 calmodulin; Provision 98.8 8.7E-08 1.9E-12 67.2 9.9 92 53-148 12-112 (149)
35 KOG0028|consensus 98.7 9.1E-08 2E-12 68.1 7.0 95 53-151 34-137 (172)
36 cd05024 S-100A10 S-100A10: A s 98.5 1.4E-06 3E-11 57.0 8.5 69 79-152 8-80 (91)
37 KOG0031|consensus 98.4 1.5E-06 3.3E-11 61.6 8.2 62 77-147 30-91 (171)
38 PLN02964 phosphatidylserine de 98.4 2E-06 4.3E-11 74.2 10.2 92 52-149 143-244 (644)
39 PF00036 EF-hand_1: EF hand; 98.4 4.2E-07 9E-12 47.0 3.8 28 80-107 1-28 (29)
40 KOG4223|consensus 98.3 1.2E-06 2.7E-11 68.8 5.0 88 53-145 201-302 (325)
41 KOG0030|consensus 98.2 3.7E-06 8.1E-11 58.7 6.3 67 79-150 11-79 (152)
42 PF13405 EF-hand_6: EF-hand do 98.2 1.9E-06 4.2E-11 45.0 3.8 27 80-106 1-27 (31)
43 PF00036 EF-hand_1: EF hand; 98.2 2E-06 4.3E-11 44.4 3.6 26 123-148 3-28 (29)
44 KOG4223|consensus 98.2 7.4E-06 1.6E-10 64.5 7.0 93 54-150 115-230 (325)
45 KOG4065|consensus 98.1 1.9E-05 4.2E-10 53.5 7.1 67 79-145 67-142 (144)
46 PF12763 EF-hand_4: Cytoskelet 98.1 2.3E-05 5E-10 52.7 7.3 61 79-147 10-70 (104)
47 PLN02964 phosphatidylserine de 98.1 1.9E-05 4.2E-10 68.2 8.1 72 69-149 132-208 (644)
48 PRK12309 transaldolase/EF-hand 98.0 1.7E-05 3.7E-10 65.0 6.7 55 77-149 332-386 (391)
49 KOG0036|consensus 98.0 3.5E-05 7.5E-10 62.6 8.2 66 79-149 14-80 (463)
50 PF13499 EF-hand_7: EF-hand do 98.0 2.4E-05 5.2E-10 47.7 5.5 51 55-105 3-66 (66)
51 PF13202 EF-hand_5: EF hand; P 97.9 1.5E-05 3.4E-10 39.6 3.3 25 81-105 1-25 (25)
52 KOG0377|consensus 97.9 5.9E-05 1.3E-09 62.0 7.8 65 79-147 547-614 (631)
53 KOG0037|consensus 97.9 6.1E-05 1.3E-09 56.4 7.0 88 51-149 56-153 (221)
54 PF14788 EF-hand_10: EF hand; 97.8 0.00014 3.1E-09 42.2 5.8 49 95-148 1-49 (51)
55 KOG4666|consensus 97.7 0.0001 2.3E-09 58.3 6.0 92 52-149 259-360 (412)
56 KOG0034|consensus 97.7 0.00047 1E-08 51.1 9.0 79 65-148 47-132 (187)
57 KOG2643|consensus 97.7 3.7E-05 8.1E-10 62.8 3.2 84 65-150 212-316 (489)
58 PF13202 EF-hand_5: EF hand; P 97.6 8.5E-05 1.8E-09 36.8 3.2 23 124-146 3-25 (25)
59 KOG0040|consensus 97.6 0.00017 3.6E-09 66.5 6.7 71 79-154 2253-2330(2399)
60 PF10591 SPARC_Ca_bdg: Secrete 97.6 2.7E-05 5.8E-10 53.1 1.4 61 78-145 53-113 (113)
61 KOG4251|consensus 97.5 0.00015 3.3E-09 55.5 4.7 69 77-147 99-167 (362)
62 KOG0046|consensus 97.4 0.00055 1.2E-08 57.3 7.4 68 79-149 19-86 (627)
63 PF13833 EF-hand_8: EF-hand do 97.4 0.00066 1.4E-08 39.6 5.3 30 78-107 24-53 (54)
64 KOG0751|consensus 97.3 0.00047 1E-08 57.5 5.0 56 53-108 74-137 (694)
65 PF13405 EF-hand_6: EF-hand do 97.2 0.0006 1.3E-08 35.3 3.4 24 124-147 4-27 (31)
66 cd00051 EFh EF-hand, calcium b 97.1 0.0016 3.4E-08 37.8 5.1 49 57-105 5-62 (63)
67 cd00052 EH Eps15 homology doma 97.0 0.0023 4.9E-08 38.6 5.1 51 58-108 5-62 (67)
68 cd00252 SPARC_EC SPARC_EC; ext 96.9 0.003 6.5E-08 43.3 5.7 55 52-106 48-107 (116)
69 smart00027 EH Eps15 homology d 96.9 0.0043 9.2E-08 40.8 6.1 56 52-107 10-72 (96)
70 smart00054 EFh EF-hand, calciu 96.8 0.0018 3.8E-08 31.5 3.0 27 81-107 2-28 (29)
71 KOG2643|consensus 96.8 0.016 3.5E-07 47.9 9.6 81 65-148 299-384 (489)
72 KOG2562|consensus 96.7 0.0038 8.2E-08 51.7 5.5 81 65-145 328-421 (493)
73 cd00213 S-100 S-100: S-100 dom 96.7 0.01 2.2E-07 38.2 6.4 57 52-108 8-80 (88)
74 smart00054 EFh EF-hand, calciu 96.6 0.0042 9.1E-08 30.1 3.5 25 124-148 4-28 (29)
75 PRK12309 transaldolase/EF-hand 96.6 0.0047 1E-07 50.8 5.5 53 52-108 334-386 (391)
76 PF09279 EF-hand_like: Phospho 96.6 0.017 3.6E-07 36.8 6.9 65 80-149 1-70 (83)
77 cd05022 S-100A13 S-100A13: S-1 96.5 0.01 2.3E-07 38.6 5.5 55 54-108 10-76 (89)
78 cd05026 S-100Z S-100Z: S-100Z 96.4 0.012 2.6E-07 38.5 5.8 56 53-108 11-82 (93)
79 cd05031 S-100A10_like S-100A10 96.4 0.0056 1.2E-07 40.1 4.1 57 52-108 8-80 (94)
80 PF14788 EF-hand_10: EF hand; 96.2 0.02 4.3E-07 33.3 4.9 31 78-108 20-50 (51)
81 cd05025 S-100A1 S-100A1: S-100 96.1 0.026 5.6E-07 36.7 6.0 57 52-108 9-81 (92)
82 cd05023 S-100A11 S-100A11: S-1 95.7 0.044 9.6E-07 35.6 5.7 44 65-108 23-81 (89)
83 cd05027 S-100B S-100B: S-100B 95.5 0.068 1.5E-06 34.6 5.9 56 53-108 9-80 (88)
84 KOG3555|consensus 95.2 0.028 6E-07 45.2 4.0 64 78-150 249-312 (434)
85 KOG0377|consensus 95.1 0.11 2.4E-06 43.2 7.3 70 79-148 464-575 (631)
86 KOG4251|consensus 95.0 0.099 2.2E-06 40.4 6.4 89 52-145 236-342 (362)
87 cd05029 S-100A6 S-100A6: S-100 94.9 0.11 2.4E-06 33.6 5.7 43 66-108 26-80 (88)
88 KOG2562|consensus 94.9 0.094 2E-06 43.7 6.5 88 53-148 226-343 (493)
89 KOG1029|consensus 94.8 0.041 8.9E-07 48.5 4.4 63 78-147 194-256 (1118)
90 KOG1955|consensus 94.7 0.088 1.9E-06 44.4 5.8 64 77-147 229-292 (737)
91 KOG0040|consensus 94.7 0.21 4.5E-06 47.4 8.5 87 51-146 2295-2396(2399)
92 PF12763 EF-hand_4: Cytoskelet 94.5 0.19 4.2E-06 33.6 6.1 54 53-107 11-71 (104)
93 KOG4578|consensus 94.3 0.037 8E-07 44.2 2.6 66 80-149 334-399 (421)
94 cd05030 calgranulins Calgranul 93.9 0.15 3.3E-06 32.9 4.6 31 78-108 50-80 (88)
95 KOG3866|consensus 93.7 0.15 3.2E-06 40.7 5.0 65 84-148 249-324 (442)
96 KOG2243|consensus 92.5 0.26 5.7E-06 46.5 5.3 59 84-148 4062-4120(5019)
97 cd05024 S-100A10 S-100A10: A s 92.4 0.35 7.6E-06 31.6 4.5 30 79-108 48-77 (91)
98 PLN02952 phosphoinositide phos 92.1 1.6 3.4E-05 38.1 9.4 84 65-149 13-111 (599)
99 KOG0751|consensus 92.0 1 2.2E-05 38.2 7.8 74 47-121 103-220 (694)
100 PF05042 Caleosin: Caleosin re 91.9 1.2 2.6E-05 32.6 7.2 32 114-149 94-125 (174)
101 KOG0042|consensus 90.8 0.51 1.1E-05 40.6 5.0 66 79-149 593-658 (680)
102 PF10591 SPARC_Ca_bdg: Secrete 90.7 0.51 1.1E-05 32.0 4.2 50 53-102 55-111 (113)
103 KOG0169|consensus 90.5 0.75 1.6E-05 40.7 5.9 67 78-149 135-201 (746)
104 PF14658 EF-hand_9: EF-hand do 90.0 1.4 3.1E-05 27.0 5.3 30 78-107 34-64 (66)
105 KOG0035|consensus 89.9 1.1 2.3E-05 40.7 6.5 71 78-149 746-817 (890)
106 KOG1707|consensus 89.7 2.2 4.7E-05 37.0 7.8 43 79-121 195-237 (625)
107 KOG4666|consensus 89.5 0.82 1.8E-05 36.8 5.0 66 78-147 258-323 (412)
108 KOG0038|consensus 89.2 0.76 1.6E-05 32.8 4.1 63 83-149 75-137 (189)
109 PF05517 p25-alpha: p25-alpha 88.7 2.9 6.3E-05 29.9 7.0 62 84-149 7-70 (154)
110 KOG0041|consensus 88.0 4 8.8E-05 30.7 7.4 92 52-145 99-200 (244)
111 PF09069 EF-hand_3: EF-hand; 86.3 7.1 0.00015 25.4 7.7 65 78-149 2-76 (90)
112 KOG1707|consensus 85.7 0.91 2E-05 39.2 3.4 61 79-147 315-376 (625)
113 KOG0039|consensus 81.3 3.9 8.6E-05 36.1 5.7 79 69-148 4-89 (646)
114 KOG4065|consensus 80.5 3.8 8.1E-05 28.1 4.1 19 57-75 122-140 (144)
115 KOG1029|consensus 80.3 6.9 0.00015 35.2 6.6 63 79-148 13-77 (1118)
116 PF08976 DUF1880: Domain of un 78.5 1.7 3.7E-05 29.6 2.0 31 113-147 4-34 (118)
117 KOG4347|consensus 77.5 5.2 0.00011 35.0 5.0 44 57-101 560-612 (671)
118 PF08726 EFhand_Ca_insen: Ca2+ 76.5 3.9 8.4E-05 25.3 3.0 58 79-145 6-66 (69)
119 KOG2871|consensus 74.4 5 0.00011 33.0 3.9 61 78-142 308-368 (449)
120 PF05042 Caleosin: Caleosin re 69.9 25 0.00054 25.8 6.3 66 79-148 96-166 (174)
121 PLN02230 phosphoinositide phos 67.5 39 0.00084 29.7 8.1 70 79-149 29-103 (598)
122 KOG1955|consensus 67.4 13 0.00027 32.0 4.9 57 52-108 231-294 (737)
123 KOG0998|consensus 66.4 2.7 5.9E-05 38.2 1.0 63 79-148 283-345 (847)
124 KOG0169|consensus 64.4 53 0.0011 29.6 8.3 87 53-148 137-232 (746)
125 KOG4347|consensus 62.6 7.7 0.00017 34.1 2.9 31 78-108 554-584 (671)
126 KOG4578|consensus 61.3 9.7 0.00021 30.9 3.1 47 61-107 342-398 (421)
127 PF00404 Dockerin_1: Dockerin 61.1 13 0.00028 17.3 2.3 17 89-105 1-17 (21)
128 cd07313 terB_like_2 tellurium 59.4 21 0.00045 23.1 4.1 52 93-148 13-65 (104)
129 PF08414 NADPH_Ox: Respiratory 59.3 50 0.0011 21.9 6.8 64 79-149 30-93 (100)
130 PLN02223 phosphoinositide phos 59.1 59 0.0013 28.2 7.6 71 79-150 16-94 (537)
131 PLN02222 phosphoinositide phos 59.1 48 0.001 29.1 7.1 64 79-148 25-90 (581)
132 KOG3449|consensus 58.8 54 0.0012 22.2 6.5 53 81-143 3-55 (112)
133 PF09068 EF-hand_2: EF hand; 58.5 58 0.0013 22.5 8.1 68 79-146 41-123 (127)
134 KOG4403|consensus 58.1 18 0.00039 30.4 4.2 21 52-72 68-88 (575)
135 PF07308 DUF1456: Protein of u 55.6 46 0.00099 20.4 5.0 46 97-147 15-60 (68)
136 PF01023 S_100: S-100/ICaBP ty 55.6 34 0.00074 18.9 3.9 31 79-109 6-38 (44)
137 KOG1265|consensus 54.2 59 0.0013 30.2 6.9 67 78-148 220-299 (1189)
138 PF09068 EF-hand_2: EF hand; 53.1 21 0.00045 24.7 3.3 30 78-107 96-125 (127)
139 PLN02228 Phosphoinositide phos 52.0 91 0.002 27.3 7.7 65 79-149 24-93 (567)
140 PF14513 DAG_kinase_N: Diacylg 52.0 21 0.00046 25.1 3.3 50 93-149 5-61 (138)
141 KOG3555|consensus 49.2 22 0.00048 29.1 3.3 74 70-148 202-278 (434)
142 PF09279 EF-hand_like: Phospho 46.6 40 0.00087 20.8 3.7 24 125-149 5-28 (83)
143 PF03672 UPF0154: Uncharacteri 46.4 54 0.0012 19.9 4.0 32 93-129 29-60 (64)
144 KOG1954|consensus 45.0 36 0.00077 28.5 3.9 54 83-144 448-501 (532)
145 PF08976 DUF1880: Domain of un 44.0 22 0.00047 24.4 2.2 29 48-76 3-31 (118)
146 PLN02952 phosphoinositide phos 42.5 92 0.002 27.5 6.3 52 92-149 13-66 (599)
147 PRK00523 hypothetical protein; 41.3 70 0.0015 19.9 4.0 32 93-129 37-68 (72)
148 PF06648 DUF1160: Protein of u 39.2 85 0.0018 21.7 4.6 47 77-126 35-81 (122)
149 PF08461 HTH_12: Ribonuclease 37.0 54 0.0012 19.8 3.0 37 92-133 10-46 (66)
150 PF07879 PHB_acc_N: PHB/PHA ac 35.2 37 0.00081 20.6 2.0 22 86-107 10-31 (64)
151 COG3763 Uncharacterized protei 35.0 96 0.0021 19.2 3.8 32 93-129 36-67 (71)
152 TIGR01848 PHA_reg_PhaR polyhyd 34.6 1.4E+02 0.0031 20.0 5.1 21 87-107 11-31 (107)
153 PRK01844 hypothetical protein; 34.5 1E+02 0.0022 19.2 3.9 32 93-129 36-67 (72)
154 PF04282 DUF438: Family of unk 33.3 82 0.0018 19.5 3.4 28 95-122 28-55 (71)
155 KOG0998|consensus 32.8 27 0.00058 32.0 1.7 63 79-148 11-73 (847)
156 PF14513 DAG_kinase_N: Diacylg 31.9 1.8E+02 0.004 20.4 5.9 36 93-132 46-81 (138)
157 cd07316 terB_like_DjlA N-termi 31.7 1.4E+02 0.0031 19.0 5.7 12 93-104 13-24 (106)
158 PF07105 DUF1367: Protein of u 31.2 2E+02 0.0043 21.6 5.7 66 78-147 51-126 (196)
159 PF03979 Sigma70_r1_1: Sigma-7 31.0 63 0.0014 20.3 2.8 32 92-130 18-49 (82)
160 PF04876 Tenui_NCP: Tenuivirus 30.3 2.1E+02 0.0045 20.6 7.0 53 92-147 96-159 (175)
161 PF09373 PMBR: Pseudomurein-bi 30.0 54 0.0012 16.8 1.9 16 134-149 2-17 (33)
162 TIGR00988 hip integration host 29.6 69 0.0015 20.4 2.8 45 97-142 2-48 (94)
163 PF12174 RST: RCD1-SRO-TAF4 (R 29.4 69 0.0015 19.7 2.6 46 96-149 9-54 (70)
164 KOG4004|consensus 29.2 36 0.00077 25.8 1.5 50 91-147 200-249 (259)
165 COG5562 Phage envelope protein 29.2 46 0.001 23.4 2.0 48 92-148 53-100 (137)
166 PF13592 HTH_33: Winged helix- 29.0 1.2E+02 0.0027 17.6 3.7 34 93-130 2-35 (60)
167 PF05663 DUF809: Protein of un 28.2 34 0.00074 22.7 1.2 31 1-31 1-31 (138)
168 PF12419 DUF3670: SNF2 Helicas 27.6 1.5E+02 0.0033 20.6 4.5 49 92-145 80-138 (141)
169 PTZ00373 60S Acidic ribosomal 27.5 2E+02 0.0044 19.5 5.3 44 81-129 5-48 (112)
170 KOG2301|consensus 25.9 29 0.00062 34.1 0.7 66 79-151 1417-1487(1592)
171 KOG0046|consensus 25.4 1.9E+02 0.004 25.4 5.2 44 64-107 30-85 (627)
172 PF00427 PBS_linker_poly: Phyc 24.6 2.4E+02 0.0053 19.6 5.0 18 134-151 42-59 (131)
173 PF04876 Tenui_NCP: Tenuivirus 24.1 2.8E+02 0.0061 20.0 8.3 71 51-121 82-157 (175)
174 PRK00819 RNA 2'-phosphotransfe 23.7 1.8E+02 0.004 21.3 4.4 31 90-121 28-58 (179)
175 PF10437 Lip_prot_lig_C: Bacte 23.0 1.5E+02 0.0031 18.5 3.4 42 98-146 44-86 (86)
176 PRK11858 aksA trans-homoaconit 22.8 3.9E+02 0.0085 21.9 6.7 53 98-152 322-374 (378)
177 PHA02105 hypothetical protein 22.8 1.6E+02 0.0034 17.6 3.1 49 96-148 5-57 (68)
178 KOG3442|consensus 21.9 2.3E+02 0.005 19.7 4.3 47 91-139 51-97 (132)
179 PF12588 PSDC: Phophatidylseri 21.6 2.9E+02 0.0063 19.5 4.9 44 99-149 6-55 (141)
180 PLN02863 UDP-glucoronosyl/UDP- 21.4 2E+02 0.0043 24.5 4.8 61 93-153 415-476 (477)
181 PF02864 STAT_bind: STAT prote 21.1 1E+02 0.0022 24.0 2.8 50 96-145 179-232 (254)
182 PF12213 Dpoe2NT: DNA polymera 20.7 2.2E+02 0.0048 17.6 7.4 64 78-147 6-71 (73)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.68 E-value=5e-16 Score=111.27 Aligned_cols=97 Identities=28% Similarity=0.455 Sum_probs=89.7
Q ss_pred cCCCHHHHHhhhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHH
Q psy17265 47 YVVPDEVFAGLVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEE 116 (161)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~ 116 (161)
++++.+++..++...+. +.+.|+|.+|+.. ++++..+|+.||.|++|+|+..+|+.+++.+ |..++++
T Consensus 51 ~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~de 128 (160)
T COG5126 51 FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDE 128 (160)
T ss_pred CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHH
Confidence 67788899999999877 7899999999873 6999999999999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 117 QLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 117 ~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+++.+ ++.+|.|++|.|+|++|...+...
T Consensus 129 ev~~l----l~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 129 EVEKL----LKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHH----HHhcCCCCCceEeHHHHHHHHhcc
Confidence 99999 999999999999999999988654
No 2
>KOG0034|consensus
Probab=99.63 E-value=3.7e-15 Score=109.90 Aligned_cols=103 Identities=39% Similarity=0.612 Sum_probs=87.8
Q ss_pred hhhcccccCCCCc-cchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCC--HHHHHHHH
Q psy17265 56 GLVKPENVRPDDN-TAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANIS--EEQLTSIA 122 (161)
Q Consensus 56 ~~~~~~~~~~~g~-i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~--~~~~~~l~ 122 (161)
.++..++...+|. |+|.+|... ++++..+|++||.+++|+|+++|+.+++..+++...+ +++++.++
T Consensus 70 rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 70 RIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIV 149 (187)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence 3444445456666 999999872 5699999999999999999999999999998777777 99999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhc-hhhhccccc
Q psy17265 123 ERTILEADQNGDQMISFDEFCKALERT-KKKKKKKKK 158 (161)
Q Consensus 123 ~~~~~~~d~~~~g~I~~~eF~~~l~~~-~~~~~~~~~ 158 (161)
+.++.++|.|+||+|+|+||++++.+. ....++.++
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 999999999999999999999999887 666666543
No 3
>KOG0027|consensus
Probab=99.62 E-value=5.9e-15 Score=105.71 Aligned_cols=97 Identities=30% Similarity=0.467 Sum_probs=89.4
Q ss_pred cCCCHHHHHhhhcccccCCCCccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCC
Q psy17265 47 YVVPDEVFAGLVKPENVRPDDNTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGAN 112 (161)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~ 112 (161)
+.++..++..++...+..++|.|+|.+|+.. .+.++.+|+.||+|++|+|+..||+.++..+ |.+
T Consensus 39 ~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~ 117 (151)
T KOG0027|consen 39 QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEK 117 (151)
T ss_pred CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCc
Confidence 6677899999999999999999999999873 1289999999999999999999999999996 999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 113 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 113 l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.+.++++.+ ++.+|.|+||.|+|++|+.++..
T Consensus 118 ~~~~e~~~m----i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 118 LTDEECKEM----IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCHHHHHHH----HHhcCCCCCCeEeHHHHHHHHhc
Confidence 999998888 99999999999999999999865
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=7.1e-14 Score=86.29 Aligned_cols=66 Identities=36% Similarity=0.550 Sum_probs=61.6
Q ss_pred HHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17265 80 FRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146 (161)
Q Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l 146 (161)
+++.+|+.+|.|++|+|+.+||..++..+ +...+..+++..++.+++.+|.|++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999996 8888889999999999999999999999999999875
No 5
>KOG0044|consensus
Probab=99.45 E-value=3.4e-13 Score=99.68 Aligned_cols=99 Identities=25% Similarity=0.421 Sum_probs=81.1
Q ss_pred HHHHHhhhcccccC-CCCccchhhhHh---------HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhh---CC---CCC
Q psy17265 51 DEVFAGLVKPENVR-PDDNTAFWEYQM---------FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMV---GA---NIS 114 (161)
Q Consensus 51 ~~~~~~~~~~~~~~-~~g~i~f~ef~~---------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~---~~---~l~ 114 (161)
.+.+...++..++. .+|.|+|.||++ .++++..+|++||.|++|+|++.|+-.++..++ +. +..
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~ 141 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPED 141 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcc
Confidence 45666666666555 899999999987 479999999999999999999999999998743 22 123
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 115 EEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 115 ~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
....+..++.+|+.+|.|+||.|+++||...+...
T Consensus 142 ~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 45566778888999999999999999999998764
No 6
>KOG0037|consensus
Probab=99.42 E-value=2e-12 Score=96.00 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=86.4
Q ss_pred CCHHHHHhhhcccccCCCCccchhhhHhHH---HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy17265 49 VPDEVFAGLVKPENVRPDDNTAFWEYQMFG---EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT 125 (161)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~i~f~ef~~~~---~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~ 125 (161)
++.+-...|+..++...+|+|+|.||..++ ..|+.+|+.||+|++|.|+..||+++|..+ |..++++-.+.+
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~l---- 165 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLL---- 165 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHH----
Confidence 345677777788777799999999999865 678889999999999999999999999996 999999998888
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 126 ILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 126 ~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
++.+|.-++|.|.|++|+.+|....
T Consensus 166 v~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 166 VRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHhccccCCceeHHHHHHHHHHHH
Confidence 9999988899999999999998653
No 7
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.41 E-value=1.1e-12 Score=85.87 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=62.1
Q ss_pred HHHHHHhhHhcC-CCCCceeHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchhh
Q psy17265 79 EFRMVAFKMYDL-DNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERTKKK 152 (161)
Q Consensus 79 ~~l~~~F~~~D~-d~~G~I~~~el~~~l~~~~~~~l~~-~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 152 (161)
..+..+|+.||+ +++|+|+..||+.+++..+|..++. .+++.+ ++.+|.|+||.|+|+||+.++.+....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 578999999999 9999999999999999833877887 788877 999999999999999999999876443
No 8
>PTZ00183 centrin; Provisional
Probab=99.41 E-value=3.4e-12 Score=91.05 Aligned_cols=97 Identities=29% Similarity=0.409 Sum_probs=86.1
Q ss_pred CCCHHHHHhhhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHH
Q psy17265 48 VVPDEVFAGLVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQ 117 (161)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~ 117 (161)
.++...+..++..++..++|.|+|.+|... .+.+..+|+.+|.+++|+|+.+|+..++..+ |..++..+
T Consensus 49 ~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~ 127 (158)
T PTZ00183 49 EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEE 127 (158)
T ss_pred CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHH
Confidence 345667788888888889999999999763 3578999999999999999999999999985 88999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 118 LTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 118 ~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+..+ +..+|.+++|.|+|++|..++.+.
T Consensus 128 ~~~~----~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 128 LQEM----IDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHH----HHHhCCCCCCcCcHHHHHHHHhcc
Confidence 9988 999999999999999999999764
No 9
>PTZ00184 calmodulin; Provisional
Probab=99.39 E-value=7.2e-12 Score=88.24 Aligned_cols=96 Identities=26% Similarity=0.437 Sum_probs=84.2
Q ss_pred CCCHHHHHhhhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHH
Q psy17265 48 VVPDEVFAGLVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQ 117 (161)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~ 117 (161)
.++...+..++..++.+++|.|+|.+|... ...+..+|+.+|.+++|+|+.+++..++..+ |..++.++
T Consensus 43 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~ 121 (149)
T PTZ00184 43 NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEE 121 (149)
T ss_pred CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHH
Confidence 345567788888888889999999999862 3578899999999999999999999999985 88899999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 118 LTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 118 ~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
++.+ +..+|.+++|.|+|++|+.++..
T Consensus 122 ~~~~----~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 122 VDEM----IREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHH----HHhcCCCCCCcCcHHHHHHHHhc
Confidence 8888 99999999999999999988753
No 10
>KOG0028|consensus
Probab=99.38 E-value=4.3e-12 Score=89.96 Aligned_cols=98 Identities=26% Similarity=0.423 Sum_probs=89.5
Q ss_pred cCCCHHHHHhhhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHH
Q psy17265 47 YVVPDEVFAGLVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEE 116 (161)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~ 116 (161)
+-++..++..++...+..++|.|+|.+|... .+.+..+|+.+|.|++|.|+..+|+.+.+.+ |.+++++
T Consensus 64 FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~ 142 (172)
T KOG0028|consen 64 FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDE 142 (172)
T ss_pred CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHH
Confidence 4445788889999998889999999999873 5899999999999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 117 QLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 117 ~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+++++ +..+|.+++|.|+-++|..++.+.
T Consensus 143 El~eM----IeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 143 ELMEM----IEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHH----HHHhcccccccccHHHHHHHHhcC
Confidence 99999 999999999999999999998753
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.32 E-value=1.4e-11 Score=80.57 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=61.4
Q ss_pred HHHHHHhhHhc-CCCCC-ceeHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYD-LDNDD-AISRDELLAVLHM-----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+..+|+.|| +|++| +|+..||+.+|+. + |...++.+++.+ ++.+|.|++|.|+|++|+.++.....
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKV----METLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 57899999998 79999 5999999999998 5 888899999988 99999999999999999999876543
No 12
>KOG0031|consensus
Probab=99.27 E-value=6.5e-11 Score=83.51 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=84.0
Q ss_pred CCHHHHHhhhcccccCCCCccchhhhHh----------HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHH
Q psy17265 49 VPDEVFAGLVKPENVRPDDNTAFWEYQM----------FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQL 118 (161)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~i~f~ef~~----------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~ 118 (161)
++++++..|+.. ..|.|+|--|++ .++.+..+|..||.++.|.|..+.|+++|... |.+++++++
T Consensus 65 ~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV 139 (171)
T KOG0031|consen 65 ASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEV 139 (171)
T ss_pred CCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHH
Confidence 466777778777 689999999997 47899999999999999999999999999995 999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 119 TSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 119 ~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+.+ ++.+-.|..|.|+|..|+.++.+.
T Consensus 140 ~~m----~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 140 DEM----YREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HHH----HHhCCcccCCceeHHHHHHHHHcc
Confidence 999 999999999999999999999854
No 13
>KOG0036|consensus
Probab=99.22 E-value=8.1e-11 Score=94.56 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=93.6
Q ss_pred CCHHHHHhhhcccccCCCCccchhhhHhH----HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy17265 49 VPDEVFAGLVKPENVRPDDNTAFWEYQMF----GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 124 (161)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~i~f~ef~~~----~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~ 124 (161)
+.......++...+.+.+|.++|+||..+ +.++..+|+..|.+.||.|+.+|+.+.++.+ |.+++.++++.+
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~--- 123 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKF--- 123 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHH---
Confidence 44566667777788889999999999985 6889999999999999999999999999996 999999999998
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhc---hhhhcccccccC
Q psy17265 125 TILEADQNGDQMISFDEFCKALERT---KKKKKKKKKKHN 161 (161)
Q Consensus 125 ~~~~~d~~~~g~I~~~eF~~~l~~~---~~~~~~~~~~~~ 161 (161)
++.+|+++++.|+++||...+.-+ .++.....|+|+
T Consensus 124 -~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~ 162 (463)
T KOG0036|consen 124 -FEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHV 162 (463)
T ss_pred -HHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhh
Confidence 999999999999999999988654 344556667774
No 14
>KOG0038|consensus
Probab=99.21 E-value=2e-10 Score=80.49 Aligned_cols=93 Identities=30% Similarity=0.446 Sum_probs=80.7
Q ss_pred hhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy17265 57 LVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTI 126 (161)
Q Consensus 57 ~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~ 126 (161)
+...++..+.|.++|.+|+.. .-++.-+|+.||-|++++|...+|...++.+....+++++++.+|++++
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVI 155 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 334444558999999999862 3567779999999999999999999999987566899999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhc
Q psy17265 127 LEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 127 ~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.+.|.|+||+|+|.||..++.+.
T Consensus 156 eEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 156 EEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHhcCCCCCcccHHHHHHHHHhC
Confidence 99999999999999999998764
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.20 E-value=9e-11 Score=77.56 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=60.7
Q ss_pred HHHHHHHhhHhcC-CC-CCceeHHHHHHHHHHh----hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 78 GEFRMVAFKMYDL-DN-DDAISRDELLAVLHMM----VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 78 ~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~~----~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
...++.+|..||. |+ +|+|+..||+.+++.. +|..++.++++.+ +..+|.+++|.|+|++|+.++....+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3678999999997 97 6999999999999862 2557788888888 99999999999999999999986554
Q ss_pred h
Q psy17265 152 K 152 (161)
Q Consensus 152 ~ 152 (161)
.
T Consensus 83 ~ 83 (94)
T cd05031 83 A 83 (94)
T ss_pred H
Confidence 3
No 16
>KOG0030|consensus
Probab=99.20 E-value=1.4e-10 Score=80.53 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=82.6
Q ss_pred cCCCHHHHHhhhcccccC--CCCccchhhhHhH------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCC
Q psy17265 47 YVVPDEVFAGLVKPENVR--PDDNTAFWEYQMF------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGAN 112 (161)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~~g~i~f~ef~~~------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~ 112 (161)
.+|+.+++...+...... +-.+|+|++|... -+......++||++++|.|...||+.+|.++ |..
T Consensus 42 ~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gek 120 (152)
T KOG0030|consen 42 QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEK 120 (152)
T ss_pred CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH-Hhh
Confidence 778889999988887654 4578999999873 3667788999999999999999999999996 999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 113 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 113 l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
+++++++.+ +.-. .|.+|.|+|+.|++.+..
T Consensus 121 l~eeEVe~L----lag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 121 LTEEEVEEL----LAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred ccHHHHHHH----Hccc-cccCCcCcHHHHHHHHhc
Confidence 999999987 6555 688999999999987753
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=1.7e-10 Score=75.38 Aligned_cols=69 Identities=19% Similarity=0.438 Sum_probs=60.5
Q ss_pred HHHHHHhhHhcC-CC-CCceeHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYDL-DN-DDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~~--~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+-.+|+.||. ++ +|+|+.+||+.+++.. +|.++++++++++ ++.+|.|++|+|+|+||+.++.+...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 457789999998 77 8999999999999731 3888999999998 99999999999999999999987543
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.18 E-value=2.2e-10 Score=75.65 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=57.0
Q ss_pred HHHHHHhhHhc-CCCCC-ceeHHHHHHHHHHhhC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYD-LDNDD-AISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~~~~----~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+..+|+.|| +|++| +|+..||+.++...++ ...++.+++.+ +..+|.|++|.|+|+||+.++.....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 56788899999 78998 5999999999976322 23466677777 99999999999999999999976543
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.16 E-value=2.6e-10 Score=75.00 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=58.7
Q ss_pred HHHHHHHhhHhc-CCCCCc-eeHHHHHHHHHHhhCC----CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 78 GEFRMVAFKMYD-LDNDDA-ISRDELLAVLHMMVGA----NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 78 ~~~l~~~F~~~D-~d~~G~-I~~~el~~~l~~~~~~----~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
.+.++.+|+.|| .+++|+ |+..|++.+++..+|. .++.++++.+ +..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 367999999997 999995 9999999999852243 4578888888 9999999999999999999987653
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=4.7e-10 Score=73.08 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=58.9
Q ss_pred HHHHHHhhHhcC--CCCCceeHHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYDL--DNDDAISRDELLAVLHMMVGANI----SEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D~--d~~G~I~~~el~~~l~~~~~~~l----~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
+.++.+|..||+ +++|+|+..|+..+++..+|..+ +.++++.+ +..+|.+++|.|+|++|+.++.....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 678899999999 89999999999999986335443 47887777 99999999999999999999987533
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.09 E-value=5.5e-10 Score=68.57 Aligned_cols=61 Identities=30% Similarity=0.321 Sum_probs=54.3
Q ss_pred HHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 82 MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 82 ~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+.+|..+|.+++|.|+.+|+..++... | .+.++++.+ +..+|.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568999999999999999999999985 6 477777777 999999999999999999988654
No 22
>KOG0027|consensus
Probab=99.07 E-value=7.1e-10 Score=79.32 Aligned_cols=67 Identities=40% Similarity=0.571 Sum_probs=63.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
..++.+|..||++++|+|+..||..+++.+ |..++..++..+ +..+|.+++|.|++++|+.++....
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~----~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDL----IKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 678999999999999999999999999996 999999999999 9999999999999999999998653
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.07 E-value=1.1e-09 Score=72.52 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=57.9
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
..+..+|..+|.+++|+|+.+|++.+++.. + ++.++++.+ +..+|.+++|.|+|++|+.++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 678999999999999999999999999984 5 678888888 999999999999999999988643
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.05 E-value=1e-09 Score=64.97 Aligned_cols=52 Identities=38% Similarity=0.662 Sum_probs=47.9
Q ss_pred CCCceeHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 92 NDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~~-l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.+|.|+.++|+.++.. +|.. ++++++..+ +..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999976 4999 999999999 99999999999999999999864
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.02 E-value=2.7e-09 Score=69.86 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=57.9
Q ss_pred HHHHHHhhH-hcCCCCC-ceeHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKM-YDLDNDD-AISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~-~D~d~~G-~I~~~el~~~l~~~~----~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+..+|+. +|++++| +|+.+||+.++...+ +...++.+++.+ ++.+|.|+||.|+|+||+.++.....
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 678899999 7788876 999999999999742 335567788877 99999999999999999999876533
No 26
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.99 E-value=3e-09 Score=63.23 Aligned_cols=61 Identities=41% Similarity=0.694 Sum_probs=56.3
Q ss_pred HHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17265 81 RMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146 (161)
Q Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l 146 (161)
+..+|..+|.+++|.|+.+++..++..+ +...+.+.+..+ +..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999996 888899988888 999999999999999998865
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=1e-08 Score=70.32 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=52.6
Q ss_pred hHHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 76 MFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 76 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.....+..+|..+|.|+||+|+.+||..+. + + .....+ ++++..+|.|+||.||++||+.++.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~--~~e~~~----~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D--PNEHCI----KPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c--chHHHH----HHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 346889999999999999999999999865 2 2 223444 44599999999999999999999943
No 28
>PTZ00183 centrin; Provisional
Probab=98.88 E-value=3.7e-08 Score=70.03 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=76.1
Q ss_pred HHHHhhhcccccCCCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA 122 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~ 122 (161)
..+...+..++..++|.|++.||... ...+..+|..+|.+++|.|+..++..++............++.+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~- 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA- 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH-
Confidence 34555666666678999999999652 46788999999999999999999999887643445556666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 123 ERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 123 ~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
|+.+|.+++|.|+.++|..++...
T Consensus 96 ---F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 ---FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred ---HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 999999999999999999998753
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.88 E-value=9.8e-09 Score=73.79 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHHhhhcccccCCCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA 122 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~ 122 (161)
..+.+.+..++..++|.|+..++..+ ...+..+|..+|. ++|.|+..+|..++....+..-+.+++.+.
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a- 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA- 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH-
Confidence 34455555555556777777777552 5677777777777 777777777777777643455556777776
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 123 ERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 123 ~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
|+.+|.|++|+|+..+++.++..
T Consensus 98 ---F~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 98 ---FKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred ---HHHhCCCCCceecHHHHHHHHHh
Confidence 77777777777777777777763
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.86 E-value=1.3e-08 Score=66.43 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHHHhhHhcCC--CCCceeHHHHHHHHHHhhCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYDLD--NDDAISRDELLAVLHMMVGANIS----EEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D~d--~~G~I~~~el~~~l~~~~~~~l~----~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+...|+.|+.. .+|+|+.+||+.++...+|..++ ..+++.+ +..+|.+++|.|+|++|+.++.....
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 5678899999865 47999999999999754466666 7888877 99999999999999999999986533
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=98.85 E-value=1.7e-08 Score=61.83 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=57.1
Q ss_pred HHhhHhcCCCCCceeHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhc
Q psy17265 83 VAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGD-QMISFDEFCKALERT 149 (161)
Q Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~-~l~~~~~~~l~~~~~~~~d~~~~-g~I~~~eF~~~l~~~ 149 (161)
.+|..||.++.|.|...++...|+.+ +. .+++.+++.+ ..++|+++. |.|+|++|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~-~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV-TGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH-cCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHHh
Confidence 37999999999999999999999996 77 8999999999 999999998 999999999998753
No 32
>KOG0044|consensus
Probab=98.85 E-value=1.1e-08 Score=75.90 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=76.2
Q ss_pred CHHHHHhhhcccccC-CCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHH
Q psy17265 50 PDEVFAGLVKPENVR-PDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQL 118 (161)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~ 118 (161)
+..+++.+...+-.. ++|.++-.+|..+ ......+|+.||.|++|+|+..|+..++..+ .....++-+
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl 102 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKL 102 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHh
Confidence 344555544444333 6788887777662 4788999999999999999999999999986 666667778
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 119 TSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 119 ~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.+. |+.+|.|++|.|+++|++.++...
T Consensus 103 ~w~----F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 103 KWA----FRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred hhh----heeecCCCCceEcHHHHHHHHHHH
Confidence 888 999999999999999999998764
No 33
>KOG0041|consensus
Probab=98.81 E-value=2.3e-08 Score=73.65 Aligned_cols=67 Identities=30% Similarity=0.341 Sum_probs=60.8
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
..+.+..+|+.||.+.||+|+..||+.++.++ |.+.+.-.+..+ ++..|.|.+|+|+|.+|+-++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~m----ikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHH----HHHhhcccccchhHHHHHHHHHH
Confidence 35778889999999999999999999999996 988888888888 99999999999999999988764
No 34
>PTZ00184 calmodulin; Provisional
Probab=98.78 E-value=8.7e-08 Score=67.25 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=72.6
Q ss_pred HHHhhhcccccCCCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 123 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~ 123 (161)
.+...+..++..++|.|++.+|..+ .+.+..+|+.+|.+++|.|+.+++..++...+........+..+
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~-- 89 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA-- 89 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH--
Confidence 4455555666668999999999752 45789999999999999999999999988642223334444555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 124 RTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
|+.+|.+++|.|+.++|..++..
T Consensus 90 --F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 90 --FKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred --HHhhCCCCCCeEeHHHHHHHHHH
Confidence 99999999999999999998864
No 35
>KOG0028|consensus
Probab=98.67 E-value=9.1e-08 Score=68.13 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=76.8
Q ss_pred HHHhhhcccccCCCCccchhhhHh------H---HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQM------F---GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 123 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~------~---~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~ 123 (161)
.+...+..++...+|.|++.|+.. + ...+..+..-+|+++.|.|+.++++..++..++..-+.+++...
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a-- 111 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA-- 111 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH--
Confidence 344444555566899999999943 2 36777788888999999999999999988766887789998888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 124 RTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
|+.+|.|++|+|++.+|+.+....+.
T Consensus 112 --frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 112 --FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred --HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 99999999999999999999877543
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=1.4e-06 Score=56.97 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=54.8
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchhh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKK 152 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~----~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 152 (161)
..+...|+.|- ...|.+++.||+.++..-+ +..-++..++.+ |+..|.|+||.|+|+||+.++......
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~i----m~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKI----MKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 56777899998 4467999999999998643 333456666666 999999999999999999999875443
No 37
>KOG0031|consensus
Probab=98.45 E-value=1.5e-06 Score=61.61 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=52.1
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
...+++.+|...|.|+||.|++++|+..+..+ |...++++++.+ +++. .|.|+|.-|+.++.
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM----~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAM----MKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHhC----CCCeeHHHHHHHHH
Confidence 35889999999999999999999999999996 999999998888 6554 55666666666664
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.43 E-value=2e-06 Score=74.20 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=73.2
Q ss_pred HHHHhhhcccccCCCCccchhhhHh-------HHH---HHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQM-------FGE---FRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 121 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~-------~~~---~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l 121 (161)
.++...+..++.+++|.+ +..... .++ .+..+|..+|.|++|.|+.+||..++..+ +...+++++..+
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~ea 220 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEEL 220 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHH
Confidence 445555666666677765 222211 112 38999999999999999999999999985 877888888888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 122 AERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 122 ~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
|+.+|.|++|.|+++||..++...
T Consensus 221 ----Fk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 221 ----FKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred ----HHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999999874
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=4.2e-07 Score=46.95 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 80 FRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
.+..+|+.||+|++|+|+.+|+..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4688999999999999999999999876
No 40
>KOG4223|consensus
Probab=98.28 E-value=1.2e-06 Score=68.81 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=69.4
Q ss_pred HHHhhhcccccCCCCccchhhhHh--H------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQM--F------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQL 118 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~--~------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~ 118 (161)
.+..-+...+.+++|.|++.||+. + .-.-...|..+|+|++|+++.+|++.+|.-. +......++
T Consensus 201 Vi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~-~~d~A~~EA 279 (325)
T KOG4223|consen 201 VIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS-EQDHAKAEA 279 (325)
T ss_pred HHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCC-CccHHHHHH
Confidence 344455666777999999999986 1 1233467788999999999999999998753 555667777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 119 TSIAERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 119 ~~l~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
.-+ +...|.|+||++|++|.+.-
T Consensus 280 ~hL----~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 280 RHL----LHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHH----hhhhccCccccccHHHHhhC
Confidence 778 99999999999999987653
No 41
>KOG0030|consensus
Probab=98.25 E-value=3.7e-06 Score=58.70 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=58.9
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhch
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN--GDQMISFDEFCKALERTK 150 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~--~~g~I~~~eF~~~l~~~~ 150 (161)
++++.+|..||..+||.|+....-.+++.+ |.++++.++.+. +..++.+ +--.|+|++|+.++....
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~----l~~~~~~~~~~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKV----LGQPKRREMNVKRLDFEEFLPMYQQVA 79 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHH----HcCcccchhhhhhhhHHHHHHHHHHHH
Confidence 789999999999999999999999999996 999999999888 7777766 346789999998887643
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.25 E-value=1.9e-06 Score=45.01 Aligned_cols=27 Identities=44% Similarity=0.528 Sum_probs=24.6
Q ss_pred HHHHHhhHhcCCCCCceeHHHHHHHHH
Q psy17265 80 FRMVAFKMYDLDNDDAISRDELLAVLH 106 (161)
Q Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~ 106 (161)
+++.+|+.||.|++|+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999998
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=2e-06 Score=44.40 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 123 ERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 123 ~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
+++|+.+|.|+||+|+++||+.++..
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 34499999999999999999999864
No 44
>KOG4223|consensus
Probab=98.16 E-value=7.4e-06 Score=64.50 Aligned_cols=93 Identities=25% Similarity=0.237 Sum_probs=70.6
Q ss_pred HHhhhcccccCCCCccchhhhHhH-----------------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhC
Q psy17265 54 FAGLVKPENVRPDDNTAFWEYQMF-----------------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVG 110 (161)
Q Consensus 54 ~~~~~~~~~~~~~g~i~f~ef~~~-----------------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~ 110 (161)
....+...+.+.+|.|+|.+|... ...-+..|+.-|.|++|.++.+||..++.--
T Consensus 115 ~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE-- 192 (325)
T KOG4223|consen 115 AARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE-- 192 (325)
T ss_pred HHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh--
Confidence 344445555558999999999762 2445678999999999999999999888742
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 111 ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 111 ~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
. .+.-...+|...+...|+|+||+|+++||+.=+....
T Consensus 193 e--~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 193 E--HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred h--cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 1 2333344677789999999999999999998776543
No 45
>KOG4065|consensus
Probab=98.09 E-value=1.9e-05 Score=53.46 Aligned_cols=67 Identities=30% Similarity=0.465 Sum_probs=56.8
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhh-----CC----CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMV-----GA----NISEEQLTSIAERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~-----~~----~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
+.--..|.+.|-|++|.|+.-|+..+++..- |. -.++.+++.+++.+++.-|.|+||.|+|-||.+.
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4445689999999999999999999998631 11 2578899999999999999999999999999864
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.08 E-value=2.3e-05 Score=52.65 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=52.6
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.+...+|...|. ++|+|+.++.+.++... +++...+..+ |...|.+++|+++++||+-++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHH
Confidence 567889998885 68999999999999863 5788888888 9999999999999999998875
No 47
>PLN02964 phosphatidylserine decarboxylase
Probab=98.05 E-value=1.9e-05 Score=68.19 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=57.3
Q ss_pred cchhhhHh-HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhC-CCCCHHH---HHHHHHHHHHHhCCCCCCcccHHHHH
Q psy17265 69 TAFWEYQM-FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVG-ANISEEQ---LTSIAERTILEADQNGDQMISFDEFC 143 (161)
Q Consensus 69 i~f~ef~~-~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~-~~l~~~~---~~~l~~~~~~~~d~~~~g~I~~~eF~ 143 (161)
+++.+|.. ..+.++.+|..+|+|++|.+ +..+++.+ | ..++..+ ++.+ +..+|.|++|.|+|+||+
T Consensus 132 ~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~fi~~m----f~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 132 LDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETERSFARRI----LAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred ecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHHHHHHHH----HHHhCCCCCCeEcHHHHH
Confidence 33344433 24788999999999999997 88888885 8 4777765 4555 999999999999999999
Q ss_pred HHHHhc
Q psy17265 144 KALERT 149 (161)
Q Consensus 144 ~~l~~~ 149 (161)
.++...
T Consensus 203 ~lL~~l 208 (644)
T PLN02964 203 DLIKAF 208 (644)
T ss_pred HHHHHh
Confidence 998753
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.00 E-value=1.7e-05 Score=64.98 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=47.5
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+...+..+|+.||.|++|+|+.+|+.. .+.+ |..+|.|+||.|+++||..++...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~----F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAV----FDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHH----HHHhCCCCCCCCcHHHHHHHHHHH
Confidence 468889999999999999999999831 2345 999999999999999999998754
No 49
>KOG0036|consensus
Probab=98.00 E-value=3.5e-05 Score=62.63 Aligned_cols=66 Identities=23% Similarity=0.251 Sum_probs=43.5
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~-l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.+++.+|+.+|.+++|.++..++...+..+ +.. ...+.+..+ +..+|.|.||.++|+||.+.+...
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~~~~~l----~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKL-DHPKPNYEAAKML----FSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhc-CCCCCchHHHHHH----HHhcccCcCCcccHHHHHHHHHHh
Confidence 456667777777777777777777666664 443 445555555 777777777777777777776543
No 50
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.98 E-value=2.4e-05 Score=47.69 Aligned_cols=51 Identities=25% Similarity=0.233 Sum_probs=41.7
Q ss_pred HhhhcccccCCCCccchhhhHhH-------------HHHHHHHhhHhcCCCCCceeHHHHHHHH
Q psy17265 55 AGLVKPENVRPDDNTAFWEYQMF-------------GEFRMVAFKMYDLDNDDAISRDELLAVL 105 (161)
Q Consensus 55 ~~~~~~~~~~~~g~i~f~ef~~~-------------~~~l~~~F~~~D~d~~G~I~~~el~~~l 105 (161)
...+..++.+++|.|+..|+... .+.+..+|+.+|.|++|.|+.+|+..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 44555666679999999999862 3677778999999999999999998764
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.93 E-value=1.5e-05 Score=39.55 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred HHHHhhHhcCCCCCceeHHHHHHHH
Q psy17265 81 RMVAFKMYDLDNDDAISRDELLAVL 105 (161)
Q Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l 105 (161)
++.+|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998854
No 52
>KOG0377|consensus
Probab=97.90 E-value=5.9e-05 Score=61.95 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=56.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHh---hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~---~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
..+..+|+..|.|++|.|+.+||+.+.+-+ +...++..++-++ ...+|.|+||.|++.||+.++.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHh
Confidence 456679999999999999999999998863 1446788888888 9999999999999999999985
No 53
>KOG0037|consensus
Probab=97.88 E-value=6.1e-05 Score=56.42 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=71.3
Q ss_pred HHHHHhhhcccccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHH
Q psy17265 51 DEVFAGLVKPENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTS 120 (161)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~ 120 (161)
...+...+..++...+|.|.=.|-..- .+.++.+..+||.+.+|.|...|++.+.+.+ ...+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 467777778888778888887777652 4888999999999999999999999888865 33444
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 121 IAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 121 l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+ ++.+|+|+.|.|+..|+..++...
T Consensus 129 v----F~~~D~D~SG~I~~sEL~~Al~~~ 153 (221)
T KOG0037|consen 129 V----FRTYDRDRSGTIDSSELRQALTQL 153 (221)
T ss_pred H----HHhcccCCCCcccHHHHHHHHHHc
Confidence 5 999999999999999999998753
No 54
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.76 E-value=0.00014 Score=42.22 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=39.6
Q ss_pred ceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 95 AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 95 ~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.++..|++.+|+.+ ...+++..+..+ |+..|++++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHHH
Confidence 36789999999995 999999999888 99999999999999999988864
No 55
>KOG4666|consensus
Probab=97.69 E-value=0.0001 Score=58.30 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=74.4
Q ss_pred HHHHhhhcccccCCCCccchhhhHh----------HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQM----------FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 121 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~----------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l 121 (161)
+.+..+++.++...+|.++|+|+.. ....++-+|++|+.+-||.+...+|..++...+| +..-.+.-+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 4455566666666899999999975 3689999999999999999999999999987534 444444456
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 122 AERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 122 ~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+...+...+|+|+|.+|.+++...
T Consensus 337 ----f~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 337 ----FPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred ----chhhhcccCcceeHHHHHHHHHhC
Confidence 999999999999999999998654
No 56
>KOG0034|consensus
Probab=97.67 E-value=0.00047 Score=51.08 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=64.2
Q ss_pred CCCccchhhhHhH-----HHHHHHHhhHhcCCCCCc-eeHHHHHHHHHHhhCCCCCHH-HHHHHHHHHHHHhCCCCCCcc
Q psy17265 65 PDDNTAFWEYQMF-----GEFRMVAFKMYDLDNDDA-ISRDELLAVLHMMVGANISEE-QLTSIAERTILEADQNGDQMI 137 (161)
Q Consensus 65 ~~g~i~f~ef~~~-----~~~l~~~F~~~D~d~~G~-I~~~el~~~l~~~~~~~l~~~-~~~~l~~~~~~~~d~~~~g~I 137 (161)
.+|.++..||..+ .-....+++.||.+++|. |+.+++.+.+... ..+-+.+ .+ +.+++.+|.+++|.|
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~~Kl----~faF~vYD~~~~G~I 121 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKREKL----RFAFRVYDLDGDGFI 121 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHHHHH----HHHHHHhcCCCCCcC
Confidence 7899999999774 245577899999999999 9999999999974 5444444 33 444999999999999
Q ss_pred cHHHHHHHHHh
Q psy17265 138 SFDEFCKALER 148 (161)
Q Consensus 138 ~~~eF~~~l~~ 148 (161)
+.+|+..++..
T Consensus 122 ~reel~~iv~~ 132 (187)
T KOG0034|consen 122 SREELKQILRM 132 (187)
T ss_pred cHHHHHHHHHH
Confidence 99999998864
No 57
>KOG2643|consensus
Probab=97.65 E-value=3.7e-05 Score=62.83 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=58.3
Q ss_pred CCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhh-----CC--------CCC-HHHHHHHHH
Q psy17265 65 PDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMV-----GA--------NIS-EEQLTSIAE 123 (161)
Q Consensus 65 ~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~-----~~--------~l~-~~~~~~l~~ 123 (161)
.+|-|+|.||+=+ +.....+|++||.||||.|+.+|+..+..-+. |. ..+ ..++..-
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsa-- 289 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSA-- 289 (489)
T ss_pred CCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhh--
Confidence 6789999999753 56778899999999999999999998875321 11 000 1111111
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 124 RTILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
....-+..++++++++++|.+++.+..
T Consensus 290 L~~yFFG~rg~~kLs~deF~~F~e~Lq 316 (489)
T KOG2643|consen 290 LLTYFFGKRGNGKLSIDEFLKFQENLQ 316 (489)
T ss_pred HHHHhhccCCCccccHHHHHHHHHHHH
Confidence 113446778888999999988887643
No 58
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.63 E-value=8.5e-05 Score=36.83 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.4
Q ss_pred HHHHHhCCCCCCcccHHHHHHHH
Q psy17265 124 RTILEADQNGDQMISFDEFCKAL 146 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l 146 (161)
.+|..+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 45999999999999999998864
No 59
>KOG0040|consensus
Probab=97.60 E-value=0.00017 Score=66.55 Aligned_cols=71 Identities=15% Similarity=0.324 Sum_probs=60.2
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCC-------CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI-------SEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l-------~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
..+..+|.+||++.+|.++..+|+..|+.+ |..+ ++++++.+ +...|++.+|+|+..+|+.+|.....
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~----ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEI----LDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHH----HHhcCCCCcCcccHHHHHHHHHhccc
Confidence 566779999999999999999999999996 8765 23366667 99999999999999999999987655
Q ss_pred hhc
Q psy17265 152 KKK 154 (161)
Q Consensus 152 ~~~ 154 (161)
+..
T Consensus 2328 eNI 2330 (2399)
T KOG0040|consen 2328 ENI 2330 (2399)
T ss_pred ccc
Confidence 443
No 60
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.60 E-value=2.7e-05 Score=53.15 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=42.9
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
...+...|..+|.|+||.|+..|++.+...+ .....=+..+ +...|.|+||.|+..||..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F----~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPF----FRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHH----HHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHH----HHHcCCCCCCCCCHHHHccC
Confidence 4778889999999999999999999876642 2223334444 99999999999999999764
No 61
>KOG4251|consensus
Probab=97.52 E-value=0.00015 Score=55.47 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
...+++.+|...|.+.+|+|+..|+++++..-....+ ++...--+..|...|+|+||.|+|+||..-+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHf--qeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHF--QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHH--HHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 4689999999999999999999999999986412111 01111122348889999999999999976654
No 62
>KOG0046|consensus
Probab=97.44 E-value=0.00055 Score=57.32 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
..++..|...| |++|+|+..|+..++.+. +... ....++.++.++...+.|.+|.|+|++|+.++...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 56888999999 999999999999999985 5433 33333344444999999999999999999987643
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.37 E-value=0.00066 Score=39.62 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=26.8
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
.+.+..+|..+|.+++|+|+.+|+..++..
T Consensus 24 ~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 24 EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 367999999999999999999999988763
No 64
>KOG0751|consensus
Probab=97.26 E-value=0.00047 Score=57.49 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHhhhcccccC-CCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 53 VFAGLVKPENVR-PDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 53 ~~~~~~~~~~~~-~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
....++..+.+. .||-|+|+||+.+ +.....+|..||+.++|.++.+++.+++.+.
T Consensus 74 ~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 74 KIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 444455555444 7899999999985 4677889999999999999999999999863
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.20 E-value=0.0006 Score=35.32 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.2
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 124 RTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.+|+.+|.|++|.|+++||..++.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 349999999999999999999987
No 66
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.11 E-value=0.0016 Score=37.82 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=38.8
Q ss_pred hhcccccCCCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHH
Q psy17265 57 LVKPENVRPDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVL 105 (161)
Q Consensus 57 ~~~~~~~~~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l 105 (161)
++..++...+|.|++.+|... .+.+..+|..+|.+++|.|+.+++..++
T Consensus 5 ~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 334445557899999999763 4667889999999999999999987764
No 67
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.99 E-value=0.0023 Score=38.60 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=40.8
Q ss_pred hcccccCCCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 58 VKPENVRPDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 58 ~~~~~~~~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+..++.+++|.|+..|+... .+.+..+|..+|.+++|.|+.+|+..++..+
T Consensus 5 F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 5 FRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 33445557888888888652 4678899999999999999999999888753
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.93 E-value=0.003 Score=43.26 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHhhhcccccCCCCccchhhhHhH-----HHHHHHHhhHhcCCCCCceeHHHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMF-----GEFRMVAFKMYDLDNDDAISRDELLAVLH 106 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~-----~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 106 (161)
..+.-.+..++.+++|.|+..|...+ +..+..+|..+|.|++|.|+.+|+...+.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45566667777779999999999864 46778899999999999999999998883
No 69
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.90 E-value=0.0043 Score=40.75 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=46.9
Q ss_pred HHHHhhhcccccCCCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
..+...+..++..++|.|++.++... .+.+..+|..+|.+++|+|+.+|+..++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45566666667778999999999763 578899999999999999999999998875
No 70
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.82 E-value=0.0018 Score=31.54 Aligned_cols=27 Identities=30% Similarity=0.488 Sum_probs=24.3
Q ss_pred HHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 81 RMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
++.+|..+|.+++|.|+..++..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 577999999999999999999998874
No 71
>KOG2643|consensus
Probab=96.77 E-value=0.016 Score=47.85 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCccchhhhHhH-----HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccH
Q psy17265 65 PDDNTAFWEYQMF-----GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISF 139 (161)
Q Consensus 65 ~~g~i~f~ef~~~-----~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~ 139 (161)
.++++++.+|..+ ++.+..-|..+|+..+|.|+..++..++-.. ...+.+.-..+..++-+.++.+ +-.|++
T Consensus 299 g~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~--a~~n~~~k~~~lkrvk~kf~~~-~~gISl 375 (489)
T KOG2643|consen 299 GNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAY--AGVNSKKKHKYLKRVKEKFKDD-GKGISL 375 (489)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHH--cccchHhHHHHHHHHHHhccCC-CCCcCH
Confidence 7889999999885 5677789999999999999999999999864 2234444444566667777666 556999
Q ss_pred HHHHHHHHh
Q psy17265 140 DEFCKALER 148 (161)
Q Consensus 140 ~eF~~~l~~ 148 (161)
+||..++.-
T Consensus 376 ~Ef~~Ff~F 384 (489)
T KOG2643|consen 376 QEFKAFFRF 384 (489)
T ss_pred HHHHHHHHH
Confidence 999888753
No 72
>KOG2562|consensus
Probab=96.68 E-value=0.0038 Score=51.71 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCC
Q psy17265 65 PDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQ 131 (161)
Q Consensus 65 ~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~----~~~l~~~~~~~l~~~~~~~~d~ 131 (161)
.+|.|+|.+|+-+ ..-+.=+|+..|.+++|.|+..||+-+..... .....+--++.+..+++.++.+
T Consensus 328 ~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP 407 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKP 407 (493)
T ss_pred ecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCc
Confidence 6899999999875 25677799999999999999999988877531 1222333345567778999988
Q ss_pred CCCCcccHHHHHHH
Q psy17265 132 NGDQMISFDEFCKA 145 (161)
Q Consensus 132 ~~~g~I~~~eF~~~ 145 (161)
...++|+.++|...
T Consensus 408 ~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 408 EDENKITLQDLKGS 421 (493)
T ss_pred cCCCceeHHHHhhc
Confidence 88999999999773
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.66 E-value=0.01 Score=38.17 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHhhhccccc--CCCCccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 52 EVFAGLVKPENV--RPDDNTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 52 ~~~~~~~~~~~~--~~~g~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
..+...+..++. .++|.|+..++... ...+..++..+|.+++|.|+.+++..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456666777777 68999999998652 4668889999999999999999999888764
No 74
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.61 E-value=0.0042 Score=30.09 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 124 RTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.+++.+|.+++|.|++++|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3499999999999999999998864
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.60 E-value=0.0047 Score=50.84 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHhhhcccccCCCCccchhhhHhHHHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
..+...+..++.+++|.|+..||.. +..+|..+|.|++|.|+.+|+..++...
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~----~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG----SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH----HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4556667777778999999999953 6789999999999999999999998864
No 76
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.57 E-value=0.017 Score=36.79 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=50.3
Q ss_pred HHHHHhhHhcCCCCCceeHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhc
Q psy17265 80 FRMVAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQN----GDQMISFDEFCKALERT 149 (161)
Q Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~-~l~~~~~~~l~~~~~~~~d~~----~~g~I~~~eF~~~l~~~ 149 (161)
.+..+|..|-. +.+.++.++|...|...=+. .++..++..+ +..+.++ ..+.+++++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~l----i~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKEL----IEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHH----HHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHH----HHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36788999955 78999999999999864233 4688888888 5555433 57999999999999753
No 77
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.45 E-value=0.01 Score=38.64 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred HHhhhccccc-CCCCccchhhhHhH----------H-HHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 54 FAGLVKPENV-RPDDNTAFWEYQMF----------G-EFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 54 ~~~~~~~~~~-~~~g~i~f~ef~~~----------~-~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+...+..++. .++|.|+..|+... . +.+..+++..|.|++|.|+.+|+..++..+
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3344444444 57888988888762 2 568889999999999999999999988874
No 78
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.43 E-value=0.012 Score=38.49 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHhhhccccc-CCCC-ccchhhhHhHH--------------HHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 53 VFAGLVKPENV-RPDD-NTAFWEYQMFG--------------EFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 53 ~~~~~~~~~~~-~~~g-~i~f~ef~~~~--------------~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
.+...+..+++ .++| +|+..|+.... ..+..+++.+|.|++|.|+.+||..++..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34444555553 3676 58888887632 358889999999999999999999998875
No 79
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.42 E-value=0.0056 Score=40.05 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=44.7
Q ss_pred HHHHhhhccccc-CC-CCccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 52 EVFAGLVKPENV-RP-DDNTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 52 ~~~~~~~~~~~~-~~-~g~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
..+...+..++. .+ +|.|+..|+... .+.+..+++.+|.+++|.|+.+|+..++...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345566666665 55 699999999753 2457889999999999999999999888864
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.17 E-value=0.02 Score=33.26 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+..+..+|+.+|++++|.+..+|+..+++.+
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3568889999999999999999999988764
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.11 E-value=0.026 Score=36.67 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHhhhcccc-cCCCC-ccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 52 EVFAGLVKPEN-VRPDD-NTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 52 ~~~~~~~~~~~-~~~~g-~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+.+...+..++ ..++| .|+..|+... ...+..+|+.+|.+++|.|+.+++..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 44556666665 55888 5988888653 2458889999999999999999999988864
No 82
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.71 E-value=0.044 Score=35.61 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCC-ccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 65 PDD-NTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 65 ~~g-~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+++ +|+..||..+ ...+..+++.+|.|++|.|+.+|+..++..+
T Consensus 23 g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 23 GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 444 7888888763 2568889999999999999999999988864
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.46 E-value=0.068 Score=34.62 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=42.0
Q ss_pred HHHhhhcccc-cCCCC-ccchhhhHhH--------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 53 VFAGLVKPEN-VRPDD-NTAFWEYQMF--------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 53 ~~~~~~~~~~-~~~~g-~i~f~ef~~~--------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
.+...+..++ ..++| .|+..|+... .+.+..+++..|.|++|.|+.+|+..++..+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3444455554 35788 5888888652 3558889999999999999999999888764
No 84
>KOG3555|consensus
Probab=95.21 E-value=0.028 Score=45.18 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhch
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 150 (161)
...+..+|.++|.+.||.++..||+.+-.. -.+.= ++.+|...|...||.|+-.||+.++.+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~C----ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEAC----IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc-----CchhH----HHHHHhhhcccccCccccchhhhhhccCC
Confidence 478899999999999999999999876542 23333 44449999999999999999999997653
No 85
>KOG0377|consensus
Probab=95.09 E-value=0.11 Score=43.23 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=50.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCC-------------------------------HHHH-----HHH-
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANIS-------------------------------EEQL-----TSI- 121 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~-------------------------------~~~~-----~~l- 121 (161)
..+...|+.+|.++.|+|+.......+..+.|.+++ .+++ +.+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 567778889999999999888888777764333211 1111 111
Q ss_pred -----HHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 122 -----AERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 122 -----~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
++.+|..+|.|+.|.|+.+||..++.-
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l 575 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKL 575 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHH
Confidence 455799999999999999999999863
No 86
>KOG4251|consensus
Probab=95.04 E-value=0.099 Score=40.35 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=65.1
Q ss_pred HHHHhhhcccccCCCCccchhhhHhH------------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCC
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMF------------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI 113 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~------------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l 113 (161)
..+..++..++.+++..++-.+|+.. .++.+..=...|.+.+|.++.+||...+.-. ...+
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~-n~~~ 314 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ-NFRL 314 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch-hhhh
Confidence 34556667777777877888888751 2445555567899999999999999886543 4445
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 114 SEEQLTSIAERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 114 ~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
.-.++..+ +...|.+++.+++.++.+..
T Consensus 315 alne~~~~----ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 315 ALNEVNDI----MALTDANNDEKLSLEELLER 342 (362)
T ss_pred hHHHHHHH----HhhhccCCCcccCHHHHHHH
Confidence 55555555 99999999999999987653
No 87
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.94 E-value=0.11 Score=33.62 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCccchhhhHhH------------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 66 DDNTAFWEYQMF------------GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 66 ~g~i~f~ef~~~------------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+|.|+..|+... .+.+..+++..|.|++|.|+.+||..++..+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 667777777542 3568889999999999999999998888764
No 88
>KOG2562|consensus
Probab=94.93 E-value=0.094 Score=43.70 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=60.3
Q ss_pred HHHhhhcccccCCCCccchhhhHhH-----------------------HH---HHHHHhhHhcCCCCCceeHHHHHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQMF-----------------------GE---FRMVAFKMYDLDNDDAISRDELLAVLH 106 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~~-----------------------~~---~l~~~F~~~D~d~~G~I~~~el~~~l~ 106 (161)
....++...+...+|.|+.++-..- -+ .+..-|--.|+|.+|.|++++|...-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4455666677778999988887650 12 222236667999999999999887433
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHhC----CCCCCcccHHHHHHHHHh
Q psy17265 107 MMVGANISEEQLTSIAERTILEAD----QNGDQMISFDEFCKALER 148 (161)
Q Consensus 107 ~~~~~~l~~~~~~~l~~~~~~~~d----~~~~g~I~~~eF~~~l~~ 148 (161)
. .++ ..++++||.... .-.+|+++|++|+.++..
T Consensus 306 ~----tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 306 H----TLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred c----chh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 2 233 335667788433 346899999999998754
No 89
>KOG1029|consensus
Probab=94.84 E-value=0.041 Score=48.52 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=55.3
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.-+.+..|+..|+...|+++...-+.+|... .++..++..+ +..-|.|+||+++-+||.-.+.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~I----W~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAHI----WTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhhh----eeeeccCCCCcccHHHHHHHHH
Confidence 4678889999999999999999999999863 4777888788 9999999999999999987664
No 90
>KOG1955|consensus
Probab=94.69 E-value=0.088 Score=44.37 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=56.7
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
..+....-|+....|-.|+|+..--++++++ .++.-.++..+ |...|.|+||.++..||+..+.
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshI----WeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHI----WELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHH----HhhcccCccccccHHHHHhhHh
Confidence 3567778899999999999999999999986 36788888888 9999999999999999999874
No 91
>KOG0040|consensus
Probab=94.67 E-value=0.21 Score=47.37 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=69.6
Q ss_pred HHHHHhhhcccccCCCCccchhhhHhH-----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHH
Q psy17265 51 DEVFAGLVKPENVRPDDNTAFWEYQMF-----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLT 119 (161)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~i~f~ef~~~-----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~ 119 (161)
+..|..++...+++.+|.|..++|..| .+.+..+|+..|. +.-||+.+++.. +++.++++
T Consensus 2295 ~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~--------~ltreqae 2365 (2399)
T KOG0040|consen 2295 EPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ--------NLTREQAE 2365 (2399)
T ss_pred ChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh--------cCCHHHHH
Confidence 458999999999999999999999885 4799999999998 788999888653 45677777
Q ss_pred HHHHHHHHHhCCC----CCCcccHHHHHHHH
Q psy17265 120 SIAERTILEADQN----GDQMISFDEFCKAL 146 (161)
Q Consensus 120 ~l~~~~~~~~d~~----~~g~I~~~eF~~~l 146 (161)
-++..|-..+++. -.+.+.|.+|++.+
T Consensus 2366 fc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2366 FCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred HHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 7766666666663 23679999998765
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.46 E-value=0.19 Score=33.63 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=40.5
Q ss_pred HHHhhhcccccCCCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
.|..++...+. .+|.|+-.+-..+ .+.+..++...|.|++|+++.+||..+++-
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 44555554442 5678877666552 589999999999999999999999988874
No 93
>KOG4578|consensus
Probab=94.26 E-value=0.037 Score=44.22 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=51.2
Q ss_pred HHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 80 FRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.+...|..+|+|.++.|.+.|++.+=.-+ ......++....+++..|.|+|-+|+++||..++...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l----~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVL----LKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHH----HhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 56778999999999999999976544432 1223344555666999999999999999999999743
No 94
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.88 E-value=0.15 Score=32.86 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
...+..+|+.+|.+++|.|+.+||..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4678899999999999999999999888764
No 95
>KOG3866|consensus
Probab=93.73 E-value=0.15 Score=40.66 Aligned_cols=65 Identities=22% Similarity=0.433 Sum_probs=47.7
Q ss_pred HhhHhcCCCCCceeHHHHHHHHHHh----hCCCCCHHHHHH-------HHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 84 AFKMYDLDNDDAISRDELLAVLHMM----VGANISEEQLTS-------IAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 84 ~F~~~D~d~~G~I~~~el~~~l~~~----~~~~l~~~~~~~-------l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.|...|.|+||+++..||..++..- +...-....+.+ +-+-+|+.+|.|.|-.|+.+||+..-.+
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 7888899999999999999888742 222222222222 3444789999999999999999987654
No 96
>KOG2243|consensus
Probab=92.52 E-value=0.26 Score=46.49 Aligned_cols=59 Identities=17% Similarity=0.426 Sum_probs=50.0
Q ss_pred HhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 84 ~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.|+-||+||.|.|++.++..++.. -...++.+++-+ +.-...|.+..++|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfl----lscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFL----LSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHH----HHhhccCccccccHHHHHHHhcC
Confidence 578889999999999999999985 245677777777 88888899999999999987754
No 97
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.36 E-value=0.35 Score=31.61 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
+.+..+++..|.|+||.|+..|+..++..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 668888888999999999999988888764
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=92.05 E-value=1.6 Score=38.10 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCCccchhhhHhH-----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCC-
Q psy17265 65 PDDNTAFWEYQMF-----------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQ- 131 (161)
Q Consensus 65 ~~g~i~f~ef~~~-----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~-~l~~~~~~~l~~~~~~~~d~- 131 (161)
..|.++|.+|.++ ...+..+|..|-.+ ++.++.++|..+|...-+. ..+...++.+++.++.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3578899999764 35788899998654 4789999999999985232 35667777775555544321
Q ss_pred --CCCCcccHHHHHHHHHhc
Q psy17265 132 --NGDQMISFDEFCKALERT 149 (161)
Q Consensus 132 --~~~g~I~~~eF~~~l~~~ 149 (161)
.+.+.++++.|..++...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 234569999999999753
No 99
>KOG0751|consensus
Probab=91.97 E-value=1 Score=38.22 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=54.2
Q ss_pred cCCCHHHHHhhhcccccCCCCccchhhhHh--------------------------------------------HHHHHH
Q psy17265 47 YVVPDEVFAGLVKPENVRPDDNTAFWEYQM--------------------------------------------FGEFRM 82 (161)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~i~f~ef~~--------------------------------------------~~~~l~ 82 (161)
...++..+...+..++..++|.++|+++.. ..+..+
T Consensus 103 lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 103 LCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred ccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333455666666666777888888888865 135567
Q ss_pred HHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHH
Q psy17265 83 VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 121 (161)
Q Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l 121 (161)
.+|+..|+.++|.|+.=+++.++... -..+....++..
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~-~~h~lt~~v~~n 220 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTI-RIHLLTPFVEEN 220 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhh-hhhcCCHHHhhh
Confidence 79999999999999999999998875 445555556554
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.85 E-value=1.2 Score=32.56 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 114 SEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 114 ~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.++..+++ |..++..+.+.+++.|...++...
T Consensus 94 vp~kFe~i----F~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 94 VPQKFEEI----FSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred CHHHHHHH----HHHhCCCCCCCcCHHHHHHHHHhc
Confidence 35566666 999988888899999999988753
No 101
>KOG0042|consensus
Probab=90.82 E-value=0.51 Score=40.63 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=58.2
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
...+.-|..+|.|+.|+++..++..+++.. +..++.....++ +.+.|.+-+|.+...||..++...
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEE----LQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHHH
Confidence 445678899999999999999999999996 778999988888 999998889999999999988754
No 102
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=90.67 E-value=0.51 Score=32.02 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHhhhcccccCCCCccchhhhHhH-------HHHHHHHhhHhcCCCCCceeHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQMF-------GEFRMVAFKMYDLDNDDAISRDELL 102 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~~-------~~~l~~~F~~~D~d~~G~I~~~el~ 102 (161)
.+.=++..++.+.+|.++-.|...+ +.-++..|+..|.|+||.|+..|..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3344455556668999999998764 4567889999999999999998865
No 103
>KOG0169|consensus
Probab=90.50 E-value=0.75 Score=40.67 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=55.4
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
...+..+|+..|++++|.++..+..++++.+ ...++...+..+ +++.+..+++++..++|+.+....
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~----f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRL----FKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHH----HHHHHhhccceehHHHHHHHHHhh
Confidence 4667789999999999999999999999985 777777777777 888877888889888888876543
No 104
>PF14658 EF-hand_9: EF-hand domain
Probab=90.04 E-value=1.4 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHhhHhcCCCC-CceeHHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDND-DAISRDELLAVLHM 107 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~-G~I~~~el~~~l~~ 107 (161)
+..+..+.+.+|+++. |.|+.+++..+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4677888888888887 88888888887764
No 105
>KOG0035|consensus
Probab=89.94 E-value=1.1 Score=40.66 Aligned_cols=71 Identities=25% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~-~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
..+++..|+.+|+...|.++.+++...+..+ |.+..+ +++..-+-+++...|.+.-|+++|.+|...+.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4889999999999999999999999999986 887765 3444444455677777777999999999999764
No 106
>KOG1707|consensus
Probab=89.68 E-value=2.2 Score=37.01 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=35.1
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 121 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l 121 (161)
..+.++|...|.|.||.++-.|+...=+..|+.++...+++.+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~v 237 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDV 237 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHH
Confidence 7788899999999999999999988877766777766665543
No 107
>KOG4666|consensus
Probab=89.51 E-value=0.82 Score=36.79 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=52.7
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.+.+.-.|..||.+++|.++..|-...+.-+.+...+..-++-. ++.++.+.||.+.=.+|.-+++
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~a----fk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYA----FKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHH----HHhcccccccccchHHHHHHHH
Confidence 58899999999999999999888777776553545555544444 9999999999999888877775
No 108
>KOG0038|consensus
Probab=89.24 E-value=0.76 Score=32.82 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=46.3
Q ss_pred HHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 83 VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
++-..|-.||.|.++.+++-.++.-+ +. +.+.+++. .-.++-+|-|+|+.|.-.+....+...
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~-sE-~APrdlK~--~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVF-SE-MAPRDLKA--KYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHH-Hh-hChHHhhh--hheeEEeecCCCCcccHHHHHHHHHHH
Confidence 34455667999999999999999864 33 33444432 234788999999999999988887653
No 109
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.71 E-value=2.9 Score=29.90 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=43.9
Q ss_pred HhhHhcCCCCCceeHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 84 AFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 84 ~F~~~D~d~~G~I~~~el~~~l~~~--~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
.|..|-..+...++..-+..+++.. ++..++...++.+ |..+-..+...|+|++|+.+|...
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHHHH
Confidence 3434445667789999999999974 2346777777777 999866666779999999999754
No 110
>KOG0041|consensus
Probab=88.02 E-value=4 Score=30.74 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHhhhcccccCCCCccchhhhHhHHH---------HHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCH-HHHHHH
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQMFGE---------FRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISE-EQLTSI 121 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~~~~---------~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~-~~~~~l 121 (161)
.++..++..++...||.|++.|...+.+ -++.+....|.|.+|.|+..|+--+++......+.. ..+..+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~L 178 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRL 178 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHH
Confidence 5666777777777999999999988644 346688889999999999999988888753444433 233333
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 122 AERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 122 ~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
.-...+|...-|...-..|...
T Consensus 179 --Ar~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 179 --ARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred --HHhcccchhhhhhhhHHHHHHH
Confidence 1133367777776655666544
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.31 E-value=7.1 Score=25.43 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhh------CCC----CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMV------GAN----ISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~------~~~----l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.++++-+|..+ .|.+|.++..-|...|+.++ |+. ..+..++.+ |... ..+..|+-++|+..++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sC----F~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSC----FQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHH----HHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHH----hccc--CCCCccCHHHHHHHHH
Confidence 57899999998 68899999999888888632 332 234444444 7765 3566799999999987
Q ss_pred hc
Q psy17265 148 RT 149 (161)
Q Consensus 148 ~~ 149 (161)
..
T Consensus 75 ~e 76 (90)
T PF09069_consen 75 SE 76 (90)
T ss_dssp T-
T ss_pred hC
Confidence 53
No 112
>KOG1707|consensus
Probab=85.70 E-value=0.91 Score=39.22 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI-SEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l-~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
+.+..+|..||.|+||.++..|+..++... +... ....- -...-.+..|.+++..|+..|.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~-P~~pW~~~~~-------~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTA-PGSPWTSSPY-------KDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhC-CCCCCCCCcc-------cccceecccceeehhhHHHHHH
Confidence 788999999999999999999999999984 3322 10000 0011123678899999888774
No 113
>KOG0039|consensus
Probab=81.31 E-value=3.9 Score=36.07 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=57.9
Q ss_pred cchhhhHh----HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHHhCCCCCCcccHHH
Q psy17265 69 TAFWEYQM----FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGA---NISEEQLTSIAERTILEADQNGDQMISFDE 141 (161)
Q Consensus 69 i~f~ef~~----~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~---~l~~~~~~~l~~~~~~~~d~~~~g~I~~~e 141 (161)
+++++|.. ++.+++..|.++|. ++|.++.+++..++..+... .........+...++...|.+..|.+.+++
T Consensus 4 ~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 4 ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNED 82 (646)
T ss_pred cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecc
Confidence 55555542 57999999999998 89999999999998864211 122334444566679999999999988887
Q ss_pred HHHHHHh
Q psy17265 142 FCKALER 148 (161)
Q Consensus 142 F~~~l~~ 148 (161)
+..++..
T Consensus 83 ~~~ll~~ 89 (646)
T KOG0039|consen 83 LEILLLQ 89 (646)
T ss_pred hhHHHHh
Confidence 7776653
No 114
>KOG4065|consensus
Probab=80.55 E-value=3.8 Score=28.13 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=9.6
Q ss_pred hhcccccCCCCccchhhhH
Q psy17265 57 LVKPENVRPDDNTAFWEYQ 75 (161)
Q Consensus 57 ~~~~~~~~~~g~i~f~ef~ 75 (161)
.+..-+.+++|.|+|.||.
T Consensus 122 vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 122 VLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred HhcccccCCCceeeHHHHH
Confidence 3333333456666666654
No 115
>KOG1029|consensus
Probab=80.27 E-value=6.9 Score=35.23 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHhhHhc--CCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYD--LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 79 ~~l~~~F~~~D--~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
++..+.+..|+ +.+.|+|+...-++++... | +...-+.++ +...|.|+||+++..||.-.|.-
T Consensus 13 ~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS-~--LP~~VLaqI----WALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 13 EERQKHDAQFGQLKPGQGFITGDQARNFFLQS-G--LPTPVLAQI----WALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHHHHHhccCCCCCccchHhhhhhHHhc-C--CChHHHHHH----HHhhhcCccccchHHHHHHHHHH
Confidence 34445555555 4678999999999999874 4 556655556 99999999999999999877754
No 116
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=78.52 E-value=1.7 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 113 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 113 l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
+++++++.+ +..+-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHH----HTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhh----hhhCcCCccCCEeHHHHHHHcc
Confidence 688898888 9999999999999999998775
No 117
>KOG4347|consensus
Probab=77.49 E-value=5.2 Score=35.04 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=25.0
Q ss_pred hhcccccCCCCccchhhhHh---------HHHHHHHHhhHhcCCCCCceeHHHH
Q psy17265 57 LVKPENVRPDDNTAFWEYQM---------FGEFRMVAFKMYDLDNDDAISRDEL 101 (161)
Q Consensus 57 ~~~~~~~~~~g~i~f~ef~~---------~~~~l~~~F~~~D~d~~G~I~~~el 101 (161)
++...+++.+|.++|.+++. ..+++...|+.+|.+++ ..+.++.
T Consensus 560 lF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 560 LFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33334444566666666654 23566666666666666 6665555
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.49 E-value=3.9 Score=25.28 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC---CCCcccHHHHHHH
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN---GDQMISFDEFCKA 145 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~---~~g~I~~~eF~~~ 145 (161)
+.+..+|+.. .++.++|+.+||+..|.. ++++-++++|-...+.+ ..|.++|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p--------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP--------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C--------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc--------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 7889999999 778899999999986542 22222311112222222 2367888888653
No 119
>KOG2871|consensus
Probab=74.45 E-value=5 Score=32.97 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=42.8
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF 142 (161)
.+.+++.|+.+|+.++|+|+..-++.++..+ ...+++...-.+ +-...|+..-|.|-..+|
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~l---~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVML---MRQPLDPESLGIILLEDF 368 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHHHHHH---hcCccChhhcceEEeccc
Confidence 5899999999999999999999999999985 655555543332 123344444455544444
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=69.85 E-value=25 Score=25.78 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGAN-----ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~-----l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
+++..+|.+|++.+.+.++..|+..+++.. -.. .....+++. .++.. -.+.+|.+.-++-..++.+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D~~GW~a~~~EW~--~~y~L-~~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN-RNANDPFGWFAAFFEWG--ALYIL-AKDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-cccCCcchhhhhhhHHH--HHHHH-HcCcCCcEeHHHHhhhcch
Confidence 788999999999999999999999999863 111 223344432 11333 3678999998887776644
No 121
>PLN02230 phosphoinositide phospholipase C 4
Probab=67.52 E-value=39 Score=29.74 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=49.6
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGA--NISEEQLTSIAERTILEAD---QNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~--~l~~~~~~~l~~~~~~~~d---~~~~g~I~~~eF~~~l~~~ 149 (161)
..++.+|..|-.++ ++++.++|..+|...-+. ..+.+.++.+++.+..... .-+.+.++.+.|..++...
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 78999999996444 899999999999985112 2356667777555443332 1234579999999998764
No 122
>KOG1955|consensus
Probab=67.36 E-value=13 Score=31.96 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHhhhcccccCCCCccchhhhHh-------HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 52 EVFAGLVKPENVRPDDNTAFWEYQM-------FGEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ef~~-------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
++|...+..+.....|-|.=.--.. ...++..++++.|.|+||.++..||..++.-+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 5666777777666666654322222 35899999999999999999999999998853
No 123
>KOG0998|consensus
Probab=66.37 E-value=2.7 Score=38.24 Aligned_cols=63 Identities=29% Similarity=0.325 Sum_probs=52.9
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
..+..+|...|.+.+|.|+..+...++.. ..++...+... +...|..+.|.|++++|+-.+..
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHV----WLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhh----hhhcchhccCcccccccchhhhh
Confidence 45566999999999999999999988875 45677777777 99999999999999988877653
No 124
>KOG0169|consensus
Probab=64.40 E-value=53 Score=29.59 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHHhhhcccccCCCCccchhhhHhH---------HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy17265 53 VFAGLVKPENVRPDDNTAFWEYQMF---------GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 123 (161)
Q Consensus 53 ~~~~~~~~~~~~~~g~i~f~ef~~~---------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~ 123 (161)
-+..++...+.+.+|.++|.+-..+ ..+++..|+-.|..++|.+...++..+...+ +..+ ++..+
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~-~~rp---ev~~~-- 210 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL-TKRP---EVYFL-- 210 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh-ccCc---hHHHH--
Confidence 3445566666668888888776542 4677888888899999999999999988875 4433 55555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 124 RTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 124 ~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
+..+-.+ .+.++.++++.++..
T Consensus 211 --f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 211 --FVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred --HHHHhCC-CCccCHHHHHHHHHH
Confidence 6666444 677777777766654
No 125
>KOG4347|consensus
Probab=62.58 E-value=7.7 Score=34.06 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMM 108 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (161)
...+.++|+.+|.+++|.|+..++...|..+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 4678999999999999999999998888764
No 126
>KOG4578|consensus
Probab=61.31 E-value=9.7 Score=30.88 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=35.5
Q ss_pred cccCCCCccchhhhHhH----------HHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 61 ENVRPDDNTAFWEYQMF----------GEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 61 ~~~~~~g~i~f~ef~~~----------~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
++.+.++.|+-.|+..| ..-.+.+|+..|.|+|..|+..|++.-|..
T Consensus 342 LdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 342 LDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34446677777777665 345567899999999999999998887764
No 127
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=61.07 E-value=13 Score=17.34 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=11.8
Q ss_pred cCCCCCceeHHHHHHHH
Q psy17265 89 DLDNDDAISRDELLAVL 105 (161)
Q Consensus 89 D~d~~G~I~~~el~~~l 105 (161)
|.|+||.|+.-++.-+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56888888887766443
No 128
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=59.41 E-value=21 Score=23.12 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCceeHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 93 DDAISRDELLAVLHMMVG-ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~-~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
||.++..|...+-..+-. ..++..+...+ +..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAEL----LAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHH
Confidence 566666665444432101 24555665555 44444433444566666666543
No 129
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=59.33 E-value=50 Score=21.94 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
..+..-|..+-. +|++++..+-..+ |.+-+.+-+.++.+.+-+.-... ...|+.+|...++...
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 667777777776 8999999988765 44456777777755555554444 5679999998888654
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=59.11 E-value=59 Score=28.23 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=51.4
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHH---HHhhCC-CCCHHHHHHHHHHHHHHhC----CCCCCcccHHHHHHHHHhch
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVL---HMMVGA-NISEEQLTSIAERTILEAD----QNGDQMISFDEFCKALERTK 150 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l---~~~~~~-~l~~~~~~~l~~~~~~~~d----~~~~g~I~~~eF~~~l~~~~ 150 (161)
+.++.+|..|- +++|.++.+.+.+.+ ...-|. ..+.++++.+++.++.... ..+.+.++.+.|..++....
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~~ 94 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFSTE 94 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCcc
Confidence 67888999884 678999999999999 432132 4667888888777665442 12236799999999997643
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=59.07 E-value=48 Score=29.06 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQ-NGDQMISFDEFCKALER 148 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~-~l~~~~~~~l~~~~~~~~d~-~~~g~I~~~eF~~~l~~ 148 (161)
..+..+|..|-. ++.++.++|..+|...-+. ..+.+.+..+ +..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~i----i~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSI----INSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHH----HHhhhhhhhccCcCHHHHHHHhcC
Confidence 688899998864 4799999999999985233 2456667777 554321 24567999999999975
No 132
>KOG3449|consensus
Probab=58.84 E-value=54 Score=22.18 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=41.3
Q ss_pred HHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q psy17265 81 RMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143 (161)
Q Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~ 143 (161)
+..+|-+++..++-..+..+++.+|..+ |...+.+.++.+ +..+ +|+ +.+|.+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~v----isel----~GK-~i~ElI 55 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLV----LSEL----KGK-DIEELI 55 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHH----HHHh----cCC-CHHHHH
Confidence 4456777788888899999999999995 999999999888 7776 444 455543
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=58.47 E-value=58 Score=22.45 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=42.9
Q ss_pred HHHHHHhhHhcCCC--CCceeHHHHHHHHHHhh-------CCCCC------HHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q psy17265 79 EFRMVAFKMYDLDN--DDAISRDELLAVLHMMV-------GANIS------EEQLTSIAERTILEADQNGDQMISFDEFC 143 (161)
Q Consensus 79 ~~l~~~F~~~D~d~--~G~I~~~el~~~l~~~~-------~~~l~------~~~~~~l~~~~~~~~d~~~~g~I~~~eF~ 143 (161)
..+..+|+...-+. +..++..++..++..++ +...+ +.-++-++.-++..+|++++|.|..-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 55667777765443 46799999999999865 21111 13344456667999999999999988876
Q ss_pred HHH
Q psy17265 144 KAL 146 (161)
Q Consensus 144 ~~l 146 (161)
..+
T Consensus 121 vaL 123 (127)
T PF09068_consen 121 VAL 123 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 134
>KOG4403|consensus
Probab=58.06 E-value=18 Score=30.41 Aligned_cols=21 Identities=5% Similarity=0.027 Sum_probs=11.0
Q ss_pred HHHHhhhcccccCCCCccchh
Q psy17265 52 EVFAGLVKPENVRPDDNTAFW 72 (161)
Q Consensus 52 ~~~~~~~~~~~~~~~g~i~f~ 72 (161)
+-+..+...+++..+|.|+..
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ 88 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVE 88 (575)
T ss_pred HHHHHHHHhcccccCCCcccc
Confidence 344455555555555555553
No 135
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=55.63 E-value=46 Score=20.38 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=29.7
Q ss_pred eHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 97 SRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 97 ~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
+.+++..++... |..++..++..+ ++.-+..+--..+=+.+..++.
T Consensus 15 ~d~~m~~if~l~-~~~vs~~el~a~----lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALA-GFEVSKAELSAW----LRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHc-CCccCHHHHHHH----HCCCCCccccccChHHHHHHHH
Confidence 345688888875 888888888888 7776554433444444444443
No 136
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=55.61 E-value=34 Score=18.93 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=23.3
Q ss_pred HHHHHHhhHhc-C-CCCCceeHHHHHHHHHHhh
Q psy17265 79 EFRMVAFKMYD-L-DNDDAISRDELLAVLHMMV 109 (161)
Q Consensus 79 ~~l~~~F~~~D-~-d~~G~I~~~el~~~l~~~~ 109 (161)
..+..+|+.|- . .....+++.||+.++..-+
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~El 38 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKEL 38 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHHH
Confidence 45677888875 2 3456899999999998753
No 137
>KOG1265|consensus
Probab=54.24 E-value=59 Score=30.16 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=55.5
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHh---------hCCCCCHHHHHHHHHHHHHHhCCCC----CCcccHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMM---------VGANISEEQLTSIAERTILEADQNG----DQMISFDEFCK 144 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~---------~~~~l~~~~~~~l~~~~~~~~d~~~----~g~I~~~eF~~ 144 (161)
.-.+..+|..+-.++.-+++.++|..+|..- +-...++..+..+ +..+..|. +|+++-+.|++
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~l----iekyEp~~~~a~~gqms~dgf~r 295 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSL----IEKYEPNSDNAEKGQMSTDGFVR 295 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHH----HHHcCCchhhhhccccchhhhHH
Confidence 4788899999998888999999999999852 1234678888888 88887774 69999999999
Q ss_pred HHHh
Q psy17265 145 ALER 148 (161)
Q Consensus 145 ~l~~ 148 (161)
.+++
T Consensus 296 yl~g 299 (1189)
T KOG1265|consen 296 YLMG 299 (1189)
T ss_pred HhhC
Confidence 9986
No 138
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=53.07 E-value=21 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=23.3
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
+-.+.++...||++++|.|..-.++.++..
T Consensus 96 ~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 96 DLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 456788999999999999999999988765
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=52.03 E-value=91 Score=27.33 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=46.7
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhc
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQN----GDQMISFDEFCKALERT 149 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~-l~~~~~~~l~~~~~~~~d~~----~~g~I~~~eF~~~l~~~ 149 (161)
..+..+|..+-.+ +.++.++|..+|...-+.. .+...++.+ +..+... ..|.++.+.|..++...
T Consensus 24 ~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHHhcCc
Confidence 7888999888643 6899999999998752322 344555555 7766543 34679999999999753
No 140
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=51.96 E-value=21 Score=25.13 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=28.4
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC-------CCCcccHHHHHHHHHhc
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN-------GDQMISFDEFCKALERT 149 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~-------~~g~I~~~eF~~~l~~~ 149 (161)
-+.|++.||.++-+-+ . .+...+..+ ++++..+ .++.|+|+.|..+|.-.
T Consensus 5 ~~~lsp~eF~qLq~y~--e-ys~kklkdv----l~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS--E-YSTKKLKDV----LKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp -S-S-HHHHHHHHHHH--H-H----HHHH----HHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHH--H-HHHHHHHHH----HHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 4678888988876642 2 245566666 7777443 35689999998888543
No 141
>KOG3555|consensus
Probab=49.15 E-value=22 Score=29.06 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=52.8
Q ss_pred chhhhHhHHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy17265 70 AFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVG---ANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146 (161)
Q Consensus 70 ~f~ef~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~---~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l 146 (161)
+-+|+..+..+|+.+|...=.+.++......+...-.. |. .++=..++-+| |..+|.|.||.++-.|...+.
T Consensus 202 t~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~-~d~s~~p~CKds~gWM----FnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 202 TDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASG-FDTSILPICKDSLGWM----FNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccc-cccccCcchhhhhhhh----hhccccccccccCHHHhhhhh
Confidence 34566667789999999887777776665555544222 11 12346678888 999999999999999988776
Q ss_pred Hh
Q psy17265 147 ER 148 (161)
Q Consensus 147 ~~ 148 (161)
..
T Consensus 277 ld 278 (434)
T KOG3555|consen 277 LD 278 (434)
T ss_pred cc
Confidence 54
No 142
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=46.56 E-value=40 Score=20.85 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=18.7
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 125 TILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 125 ~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+|..+.. +.+.|+.++|..++...
T Consensus 5 if~~ys~-~~~~mt~~~f~~FL~~e 28 (83)
T PF09279_consen 5 IFRKYSS-DKEYMTAEEFRRFLREE 28 (83)
T ss_dssp HHHHHCT-TSSSEEHHHHHHHHHHT
T ss_pred HHHHHhC-CCCcCCHHHHHHHHHHH
Confidence 3888855 67889999999988754
No 143
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.44 E-value=54 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 129 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 129 (161)
+-.|+.+-++..+.+. |.++|+.++.++ +...
T Consensus 29 NPpine~mir~M~~QM-G~kpSekqi~Q~----m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM-GRKPSEKQIKQM----MRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHH----HHHH
Confidence 4578999999999996 999999999887 6554
No 144
>KOG1954|consensus
Probab=45.00 E-value=36 Score=28.49 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy17265 83 VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144 (161)
Q Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~ 144 (161)
.+|-..- .-+|+|+...-+..+- +.++.+.-+-.+ ++..|.|+||.++=+||.-
T Consensus 448 e~fy~l~-p~~gk~sg~~ak~~mv---~sklpnsvlgki----wklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 448 EIFYTLS-PVNGKLSGRNAKKEMV---KSKLPNSVLGKI----WKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhhhccc-ccCceeccchhHHHHH---hccCchhHHHhh----hhhhcCCcccCcCHHHHHH
Confidence 3444333 2368888766666554 456677766666 9999999999999999953
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=44.01 E-value=22 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=20.8
Q ss_pred CCCHHHHHhhhcccccCCCCccchhhhHh
Q psy17265 48 VVPDEVFAGLVKPENVRPDDNTAFWEYQM 76 (161)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~i~f~ef~~ 76 (161)
-++++.|..+-..+..+..|.+.|.||+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~ 31 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLS 31 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHH
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHH
Confidence 35678899998899889999999999976
No 146
>PLN02952 phosphoinositide phospholipase C
Probab=42.48 E-value=92 Score=27.49 Aligned_cols=52 Identities=6% Similarity=0.061 Sum_probs=40.0
Q ss_pred CCCceeHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 92 NDDAISRDELLAVLHMMVGA--NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~--~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
+.|.++..++..+.+.+ .. .....++..+ |..+.. +++.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~-k~~~~~~r~ei~~l----f~~~~~-~~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF-KITEAEPPDDVKDV----FCKFSV-GGGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHh-ccccCCChHHHHHH----HHHHhC-CCCccCHHHHHHHHHHh
Confidence 46899999998888764 32 2367888888 998854 44689999999999753
No 147
>PRK00523 hypothetical protein; Provisional
Probab=41.32 E-value=70 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.1
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 129 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 129 (161)
+=.|+.+-++..+.+. |.++|+.+++++ ++..
T Consensus 37 NPpine~mir~M~~QM-GqKPSekki~Q~----m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQM-GRKPSESQIKQV----MRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHh-CCCccHHHHHHH----HHHH
Confidence 4578889999999996 999999999888 6655
No 148
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=39.23 E-value=85 Score=21.66 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=36.9
Q ss_pred HHHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy17265 77 FGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTI 126 (161)
Q Consensus 77 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~ 126 (161)
+.+++..+|++|- ++.|+.+.+..++...=|..++..++.=+++++.
T Consensus 35 f~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 35 FLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 4589999999998 5679999999999863146889988887755543
No 149
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=37.03 E-value=54 Score=19.77 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCC
Q psy17265 92 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 133 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~ 133 (161)
.++.++...+.+.+... |..++...+... ++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRrr----Lr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRRR----LRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHHH----HHHHHHCC
Confidence 45789999999999985 888889988888 88887664
No 150
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=35.20 E-value=37 Score=20.61 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=19.8
Q ss_pred hHhcCCCCCceeHHHHHHHHHH
Q psy17265 86 KMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 86 ~~~D~d~~G~I~~~el~~~l~~ 107 (161)
+.||...+.||+.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3689999999999999999985
No 151
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.00 E-value=96 Score=19.20 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 129 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 129 (161)
+=.|+.+-++.++.+. |.++|+..++++ ++..
T Consensus 36 NPpine~~iR~M~~qm-GqKpSe~kI~Qv----m~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQM-GQKPSEKKINQV----MRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHh-CCCchHHHHHHH----HHHH
Confidence 4578999999999996 999999999888 6654
No 152
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=34.62 E-value=1.4e+02 Score=20.03 Aligned_cols=21 Identities=10% Similarity=0.419 Sum_probs=17.5
Q ss_pred HhcCCCCCceeHHHHHHHHHH
Q psy17265 87 MYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 87 ~~D~d~~G~I~~~el~~~l~~ 107 (161)
.||...+-||+.++++.++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC
Confidence 578888888888888888875
No 153
>PRK01844 hypothetical protein; Provisional
Probab=34.49 E-value=1e+02 Score=19.22 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 129 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 129 (161)
+=.|+.+-++..+.+. |.++|+.+++++ ++..
T Consensus 36 NPpine~mir~Mm~QM-GqkPSekki~Q~----m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQM-GQKPSQKKINQM----MSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHH----HHHH
Confidence 3478889999999996 999999999888 6655
No 154
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=33.34 E-value=82 Score=19.52 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=13.7
Q ss_pred ceeHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy17265 95 AISRDELLAVLHMMVGANISEEQLTSIA 122 (161)
Q Consensus 95 ~I~~~el~~~l~~~~~~~l~~~~~~~l~ 122 (161)
.|++.|+..+=..++...++.+++..+|
T Consensus 28 ~Vs~~EI~~~Eq~Li~eG~~~eeiq~LC 55 (71)
T PF04282_consen 28 DVSASEISAAEQELIQEGMPVEEIQKLC 55 (71)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 3455555544444444445555555543
No 155
>KOG0998|consensus
Probab=32.85 E-value=27 Score=32.04 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
......|+..|..++|.|+..+-..++.. ..+....+-++ +...|..+.|.++..+|+..++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~qi----ws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK---SGLPDQVLGQI----WSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc---cccchhhhhcc----ccccccccCCccccccccccchH
Confidence 45667899999999999999998887774 34566665556 89999999999999999888764
No 156
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=31.86 E-value=1.8e+02 Score=20.41 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 132 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~ 132 (161)
.+.|+.+.|+..|+.-+...++.+--..+ |..+-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hL----F~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHL----FLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHH----HHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHH----HHHHhCc
Confidence 56899999999999865666655544444 8877544
No 157
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=31.75 E-value=1.4e+02 Score=19.03 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=6.4
Q ss_pred CCceeHHHHHHH
Q psy17265 93 DDAISRDELLAV 104 (161)
Q Consensus 93 ~G~I~~~el~~~ 104 (161)
||.++..|...+
T Consensus 13 DG~v~~~E~~~i 24 (106)
T cd07316 13 DGRVSEAEIQAA 24 (106)
T ss_pred cCCcCHHHHHHH
Confidence 556665554433
No 158
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=31.23 E-value=2e+02 Score=21.58 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHH------HHHHhhCCCCCHHHHHHHHHHHHHHhCCCCC----CcccHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLA------VLHMMVGANISEEQLTSIAERTILEADQNGD----QMISFDEFCKALE 147 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~------~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~----g~I~~~eF~~~l~ 147 (161)
-..+...|+.|-+.| |.|++.|-.- .|....| +...+..++++.+......+. ..=+|+.|...++
T Consensus 51 FaLL~lgFeyW~P~g-g~is~~E~~lv~g~v~~la~~~g---~~~~l~~~A~~yL~~va~~R~~~~~~~k~feafR~wvt 126 (196)
T PF07105_consen 51 FALLNLGFEYWEPTG-GTISPAERKLVRGFVKFLASYAG---SEDALQEAADQYLAKVAKKRARDIEAEKSFEAFRKWVT 126 (196)
T ss_pred HHHHHHHHHHccCCC-CccCHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhccchhhhCHHHHHHHHH
Confidence 367788999999887 9999988322 2222112 234445555555555444332 2336666666554
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=31.01 E-value=63 Score=20.26 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=19.7
Q ss_pred CCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q psy17265 92 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 130 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d 130 (161)
..|+|+..++..+|.. ..++...++.+ +..+.
T Consensus 18 ~~G~lT~~eI~~~L~~---~~~~~e~id~i----~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE---DDLDPEQIDEI----YDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S----S---HHHHHHH----HHHHH
T ss_pred hcCcCCHHHHHHHcCc---cCCCHHHHHHH----HHHHH
Confidence 3689999999998874 34778888877 65553
No 160
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=30.35 E-value=2.1e+02 Score=20.60 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCCceeHHHHHHHHHHhh-----------CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 92 NDDAISRDELLAVLHMMV-----------GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~-----------~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.+|.|+...|-.++..-+ ...++.+++..++++++..+..++... ++|..++.
T Consensus 96 ~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dt---E~Ye~vwk 159 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDT---EHYEKVWK 159 (175)
T ss_pred cccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCch---HHHHHHHH
Confidence 355666666555554321 336789999999999999887665444 44445544
No 161
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.01 E-value=54 Score=16.84 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.4
Q ss_pred CCcccHHHHHHHHHhc
Q psy17265 134 DQMISFDEFCKALERT 149 (161)
Q Consensus 134 ~g~I~~~eF~~~l~~~ 149 (161)
.|.|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 6889999999998764
No 162
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=29.58 E-value=69 Score=20.44 Aligned_cols=45 Identities=9% Similarity=0.216 Sum_probs=26.6
Q ss_pred eHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC--CCCCCcccHHHH
Q psy17265 97 SRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEF 142 (161)
Q Consensus 97 ~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d--~~~~g~I~~~eF 142 (161)
+..||...+..- ...++..+++.+++.++..+- ...++.|.+.+|
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 556777777652 345788888777666665541 234455655544
No 163
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.42 E-value=69 Score=19.73 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=30.0
Q ss_pred eeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy17265 96 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149 (161)
Q Consensus 96 I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 149 (161)
++...|-.++. ..++...+..+ ...++.=..++|+-++|++.++..
T Consensus 9 ~~F~~L~~~l~----~~l~~~~~~~l----~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 9 MPFPMLFSALS----KHLPPSKMDLL----QKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred ccHHHHHHHHH----HHCCHHHHHHH----HHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44344444444 34566666665 666655568899999999998754
No 164
>KOG4004|consensus
Probab=29.20 E-value=36 Score=25.76 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy17265 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147 (161)
Q Consensus 91 d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~ 147 (161)
.-||+++..||.-+-.-+ ++ ++..+.+++.-.|.|+||+|+.+||-.++.
T Consensus 200 p~d~~~sh~el~pl~ap~----ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRAPL----IP---MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred CccccccccccccccCCc----cc---HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 458888888865422211 11 223456669999999999999999988763
No 165
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.16 E-value=46 Score=23.37 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy17265 92 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~ 148 (161)
.+|.|.....+.+.. +....+...+ -.....+..|..+|++|++.+.+
T Consensus 53 ~~~~Il~~g~k~~~~--V~~~~n~~~i-------~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 53 SDGVILIKGVKKVVG--VAEVFNTTLI-------KTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred cCCEEEeeccccccc--eecccCHHHH-------HHHHHHHhcCCccHHHHHHHHHh
Confidence 356666555555444 2333334333 44456678999999999998864
No 166
>PF13592 HTH_33: Winged helix-turn helix
Probab=28.98 E-value=1.2e+02 Score=17.55 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q psy17265 93 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 130 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d 130 (161)
+++.+..++..++...+|..++...+-.+ ++.+.
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v~~l----L~r~G 35 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGVYRL----LKRLG 35 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHHHHH----HHHcC
Confidence 35667778888888777888888777777 66553
No 167
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=28.23 E-value=34 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCCccccccc
Q psy17265 1 MTRLFKAIAVLARSRPPSPVEAPSLSQHSLD 31 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (161)
|.|.|.-++-.+-+..|+.+..+.++...+.
T Consensus 1 mipffeklstfchnltpteckvsvisfflla 31 (138)
T PF05663_consen 1 MIPFFEKLSTFCHNLTPTECKVSVISFFLLA 31 (138)
T ss_pred CchHHHHHHHHhccCCccceeeehHHHHHHH
Confidence 7899999999999999999998888775543
No 168
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=27.55 E-value=1.5e+02 Score=20.60 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHHHHhhCC---------CCCHHHHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q psy17265 92 NDDAISRDELLAVLHMMVGA---------NISEEQLTSIAERTILEADQNGDQ-MISFDEFCKA 145 (161)
Q Consensus 92 ~~G~I~~~el~~~l~~~~~~---------~l~~~~~~~l~~~~~~~~d~~~~g-~I~~~eF~~~ 145 (161)
|+-.|+.+||..++..- .. .+++++++.+ ...+...+.+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~-~~LV~~rg~WV~ld~~~l~~~----~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQK-RPLVRFRGRWVELDPEELRRA----LAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcC-CCeEEECCEEEEECHHHHHHH----HHHHHhccccCCCCHHHHHHH
Confidence 56788999999888852 11 3678888887 7777665555 4888877665
No 169
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=27.53 E-value=2e+02 Score=19.48 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Q psy17265 81 RMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 129 (161)
Q Consensus 81 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 129 (161)
.-.+|-+.-..++..++.+++..+|... |..+....+..+ ++.+
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l~----~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDNF----FKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHH----HHHH
Confidence 3345555566677789999999999996 999988888877 6666
No 170
>KOG2301|consensus
Probab=25.95 E-value=29 Score=34.10 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=47.9
Q ss_pred HHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchh
Q psy17265 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI-----SEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKK 151 (161)
Q Consensus 79 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l-----~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 151 (161)
++...++..||++..|+|...++...++.+ ..++ .+. +-+ -..+....+|.|+|.+-+.++.+...
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L-~ppL~~~k~~~~--kli----~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSL-DPPLDLGKPNKR--KLI----SMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhc-CCccccCCCCCc--eee----eeecCcCCCCeeehhhHHHHHHHHhh
Confidence 567888899999999999999999999985 4332 122 112 33444567889999988888876533
No 171
>KOG0046|consensus
Probab=25.37 E-value=1.9e+02 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=31.2
Q ss_pred CCCCccchhhhHh------------HHHHHHHHhhHhcCCCCCceeHHHHHHHHHH
Q psy17265 64 RPDDNTAFWEYQM------------FGEFRMVAFKMYDLDNDDAISRDELLAVLHM 107 (161)
Q Consensus 64 ~~~g~i~f~ef~~------------~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (161)
+.+|.++..+-.. .+++++.+....+.|.+|.|+.+++..++-.
T Consensus 30 ~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3667777766543 1577777778888888888888887776554
No 172
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=24.56 E-value=2.4e+02 Score=19.62 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHhchh
Q psy17265 134 DQMISFDEFCKALERTKK 151 (161)
Q Consensus 134 ~g~I~~~eF~~~l~~~~~ 151 (161)
+|.|+..||++.+.....
T Consensus 42 ng~IsVreFVr~La~S~~ 59 (131)
T PF00427_consen 42 NGQISVREFVRALAKSEL 59 (131)
T ss_dssp TTSS-HHHHHHHHHTSHH
T ss_pred cCCCcHHHHHHHHHcCHH
Confidence 789999999999987654
No 173
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=24.08 E-value=2.8e+02 Score=19.97 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=44.9
Q ss_pred HHHHHhhhcccccCCCCccchhhhHhH-HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhh----CCCCCHHHHHHH
Q psy17265 51 DEVFAGLVKPENVRPDDNTAFWEYQMF-GEFRMVAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTSI 121 (161)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~i~f~ef~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~----~~~l~~~~~~~l 121 (161)
.+.+..++..-+.+.++.|++..|..+ .+++..+....=-.....++.+.++.++..++ +.....++.+.+
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~v 157 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEKV 157 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence 355566666654455788999999763 34444433332223467889999888887642 445677777777
No 174
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=23.68 E-value=1.8e+02 Score=21.33 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCCCceeHHHHHHHHHHhhCCCCCHHHHHHH
Q psy17265 90 LDNDDAISRDELLAVLHMMVGANISEEQLTSI 121 (161)
Q Consensus 90 ~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l 121 (161)
.|.+|+++.++|...+..- +..++.+.++++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~v 58 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAV 58 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHH
Confidence 4678899988888888753 556788887766
No 175
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=22.97 E-value=1.5e+02 Score=18.52 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q psy17265 98 RDELLAVLHMMVGANISEEQLTSIAERTILEADQN-GDQMISFDEFCKAL 146 (161)
Q Consensus 98 ~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~-~~g~I~~~eF~~~l 146 (161)
.++|...| .|.+.+.+.+... +...+.. .=|.++-+|++.++
T Consensus 44 i~~le~~L---~G~~~~~~~i~~~----l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL---IGCPYDREAIKEA----LNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH---TTCBSSHHHHHHH----HHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCCCHHHHHHH----HHHhCHhhccccCCHHHHHHhC
Confidence 55666656 3888899888887 7777554 23578888887764
No 176
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.80 E-value=3.9e+02 Score=21.91 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchhh
Q psy17265 98 RDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKK 152 (161)
Q Consensus 98 ~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 152 (161)
..-++..+.++ |..++.+++..++.++-...+.. ...|+-+|+..++......
T Consensus 322 ~~~v~~~l~~~-g~~~~~~~~~~~~~~vk~~~~~~-~~~~~~~el~~~~~~~~~~ 374 (378)
T PRK11858 322 RHALKNKLKEY-GIELSREELCELLEKVKELSERK-KRSLTDEELKELVEDVRRS 374 (378)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhh
Confidence 45577778885 99999999999877766555433 4679999999998765433
No 177
>PHA02105 hypothetical protein
Probab=22.76 E-value=1.6e+02 Score=17.57 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=27.8
Q ss_pred eeHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHh
Q psy17265 96 ISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGD--QMISFDEFCKALER 148 (161)
Q Consensus 96 I~~~el~~~l~~~--~~~~l~~~~~~~l~~~~~~~~d~~~~--g~I~~~eF~~~l~~ 148 (161)
++++|++.++... ...++..+.+.++ -..+....- -+++|+||.+++--
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql----~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQL----KTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHH----HHhccccceEEEEEeHHHhcccccc
Confidence 5667777766642 0123445554444 444544433 35799999887743
No 178
>KOG3442|consensus
Probab=21.86 E-value=2.3e+02 Score=19.66 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcccH
Q psy17265 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISF 139 (161)
Q Consensus 91 d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~ 139 (161)
+..|.|+.+|-.++|. +...++.++++.--+-+|..=|+...|..-.
T Consensus 51 ~~~~~iTlqEa~qILn--V~~~ln~eei~k~yehLFevNdkskGGSFYL 97 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILN--VKEPLNREEIEKRYEHLFEVNDKSKGGSFYL 97 (132)
T ss_pred cccccccHHHHhhHhC--CCCCCCHHHHHHHHHHHHhccCcccCcceee
Confidence 3457799999999987 4678898888876555577777776776533
No 179
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=21.63 E-value=2.9e+02 Score=19.49 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHH--hCCCCCCc----ccHHHHHHHHHhc
Q psy17265 99 DELLAVLHMMVGANISEEQLTSIAERTILE--ADQNGDQM----ISFDEFCKALERT 149 (161)
Q Consensus 99 ~el~~~l~~~~~~~l~~~~~~~l~~~~~~~--~d~~~~g~----I~~~eF~~~l~~~ 149 (161)
+||++++. ++..+..++.++|.+ ++.+..|. =+|++++.++...
T Consensus 6 qefk~lIe-------~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i 55 (141)
T PF12588_consen 6 QEFKDLIE-------SDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHI 55 (141)
T ss_pred HHHHHHHh-------cCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHH
Confidence 45555554 344556666666777 22333332 2778887777654
No 180
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=21.39 E-value=2e+02 Score=24.53 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCceeHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhchhhh
Q psy17265 93 DDAISRDELLAVLHMMVGANI-SEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKK 153 (161)
Q Consensus 93 ~G~I~~~el~~~l~~~~~~~l-~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~ 153 (161)
.+.++.+++...++.++...- -.+.+.++-+.+-+.....+...-++++|+..+...++++
T Consensus 415 ~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~~~ 476 (477)
T PLN02863 415 DTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGLEE 476 (477)
T ss_pred CCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhccCC
Confidence 367789999999987642110 0112222222233334445556678888988888776654
No 181
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=21.15 E-value=1e+02 Score=24.05 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=32.5
Q ss_pred eeHHHHHHHHHH----hhCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy17265 96 ISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 145 (161)
Q Consensus 96 I~~~el~~~l~~----~~~~~l~~~~~~~l~~~~~~~~d~~~~g~I~~~eF~~~ 145 (161)
++=..|.++|.. ..|..++++++.-+.+.++..-....++.|+|..|++-
T Consensus 179 v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 179 VPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp EEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 456677777764 23889999999988777777665556789999999653
No 182
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=20.72 E-value=2.2e+02 Score=17.57 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=43.4
Q ss_pred HHHHHHHhhHhcCCCCCceeHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHH
Q psy17265 78 GEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN--GDQMISFDEFCKALE 147 (161)
Q Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~l~~~~~~~l~~~~~~~~d~~--~~g~I~~~eF~~~l~ 147 (161)
...+...|++ .|+.-+.|-...+... -.++++.+.+.+++.+....+.. .+..|+.+....++.
T Consensus 6 rk~I~~~FkL-----~Gl~Lr~eA~~~l~~~-l~~~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~Av~ 71 (73)
T PF12213_consen 6 RKKIVKAFKL-----RGLSLRSEASKYLAEQ-LQSLSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIESAVK 71 (73)
T ss_dssp HHHHHHHHHH-----TT-EE-HHHHHHHHHH-TTTS-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHHHH
T ss_pred HHHHHHHhhh-----ccceecHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 4677788887 6887777766666664 35667778888888889998876 356788777666553
Done!