RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17265
(161 letters)
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 96.0 bits (239), Expect = 1e-25
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++YDLD D ISR E+L VL +MVG ++EEQL +IA+RT+ EAD++GD +SF EF
Sbjct: 119 AFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFT 178
Query: 144 KALERTKKKKK 154
K+LE+ ++K
Sbjct: 179 KSLEKMDVEQK 189
Score = 44.4 bits (105), Expect = 3e-06
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+ D + +SR +L + + V + +R I +G Q + F F
Sbjct: 34 RFRALDRNKKGYLSRMDLQQIGALAV---------NPLGDRIIESFFPDGSQRVDFPGFV 84
Query: 144 KALERTKKKKKKKKKKHN 161
+ L + + + + +
Sbjct: 85 RVLAHFRPVEDEDTETQD 102
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 91.5 bits (228), Expect = 2e-24
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++YD+D D IS EL VL MMVG N+ + QL I ++TI+ AD++GD ISF+EFC
Sbjct: 80 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 139
Query: 144 KALERTKKKKK 154
+ KK
Sbjct: 140 AVVGGLDIHKK 150
Score = 47.6 bits (114), Expect = 1e-07
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FK DLDN ++S +E +++ + + +R I D +G+ + F EF
Sbjct: 11 RFKKLDLDNSGSLSVEEFMSLPELQQ---------NPLVQRVIDIFDTDGNGEVDFKEFI 61
Query: 144 KALERTKKKKKKKKK 158
+ + + K K++K
Sbjct: 62 EGVSQFSVKGDKEQK 76
Score = 27.6 bits (62), Expect = 1.3
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFD 140
++D D + + E + + E++L A D + D IS
Sbjct: 44 IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKL--------RFAFRIYDMDKDGYISNG 95
Query: 141 EFCKAL 146
E + L
Sbjct: 96 ELFQVL 101
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 91.0 bits (226), Expect = 1e-23
Identities = 48/71 (67%), Positives = 56/71 (78%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++YDLD DD ISRDELL VL MMVG NIS+EQL SIA+RTI EADQ+GD ISF EF
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 177
Query: 144 KALERTKKKKK 154
K LE+ ++K
Sbjct: 178 KVLEKVDVEQK 188
Score = 43.2 bits (102), Expect = 6e-06
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F D + +SR++ + E + + +R I G+ ++F F
Sbjct: 34 RFTSLDKGENGTLSREDFQRIP---------ELAINPLGDRIINAFFSEGEDQVNFRGFM 84
Query: 144 KALERTKKKKKKKKKKH 160
+ L + + +K K
Sbjct: 85 RTLAHFRPIEDNEKSKD 101
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 82.5 bits (204), Expect = 1e-20
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISF 139
AF+++D D+D ++R++L +++ + G +S ++ + + + E+D + D I+
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 140 DEFCKALERT 149
EF + R+
Sbjct: 163 SEFQHVISRS 172
Score = 25.9 bits (57), Expect = 5.4
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 74 YQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN- 132
++ F E + + + +++L ++ E + ER +
Sbjct: 23 HRRFCELLPQEQRSVESSLRAQVPFEQIL---------SLPELKANPFKERICRVFSTSP 73
Query: 133 GDQMISFDEFCKALERTKKKKKKKKK 158
+SF++F L K
Sbjct: 74 AKDSLSFEDFLDLLSVFSDTATPDIK 99
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 81.0 bits (200), Expect = 7e-20
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGAN---ISEEQLTSIAERTILEADQNGDQMISFD 140
AFK+YDL I R+EL ++ ++ + +SE+ + + ++ ++AD+ D I D
Sbjct: 116 AFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Query: 141 EFCKALER 148
E+ +
Sbjct: 176 EWKDFVSL 183
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148
+ +D I ++E L + A+R D + +I F EF ++L
Sbjct: 49 SIIDDGLIHKEEFQLALFRN------RNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGV 102
Query: 149 TKKKKKKKKK 158
+K
Sbjct: 103 FHPSAPVHEK 112
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 80.3 bits (198), Expect = 2e-19
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGA----NISEEQLTSIAERTILEADQNGDQMISF 139
AF+++D D+D ++R++L +++ + G +S ++ + + + E+D + D I+
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 140 DEFCKALERT 149
EF + R+
Sbjct: 194 SEFQHVISRS 203
Score = 29.8 bits (67), Expect = 0.31
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 10/88 (11%)
Query: 74 YQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN- 132
++ F E + + + +++L ++ E + ER +
Sbjct: 54 HRRFCELLPQEQRSVESSLRAQVPFEQIL---------SLPELKANPFKERICRVFSTSP 104
Query: 133 GDQMISFDEFCKALERTKKKKKKKKKKH 160
+SF++F L K H
Sbjct: 105 AKDSLSFEDFLDLLSVFSDTATPDIKSH 132
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 77.6 bits (191), Expect = 2e-18
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHM---MVGANISEEQLTSIAERTILEADQNGDQMISFD 140
+F++YDL I R E+ ++ G N+ + + I ++T EAD D I +
Sbjct: 127 SFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Query: 141 EFCKALER 148
E+ + R
Sbjct: 187 EWRSLVLR 194
Score = 37.5 bits (87), Expect = 7e-04
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148
+ +D I+++E L ++ + A+R D + ++ F+EF +AL
Sbjct: 60 AVIDDGLINKEEFQLALFKT------NKKESLFADRVFDLFDTKHNGILGFEEFARALSV 113
Query: 149 TKKKKKKKKK 158
K
Sbjct: 114 FHPNAPIDDK 123
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 73.5 bits (180), Expect = 2e-17
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMM-------VGANISEEQLTSIAERTILEADQ 131
E ++ FKM+D D ++ + EL + + +SE++L +I + + + D+
Sbjct: 68 ELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDK 127
Query: 132 NGDQMISFDEFCKALE 147
N D I + EF K+L+
Sbjct: 128 NNDGYIDYAEFAKSLQ 143
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 69.8 bits (171), Expect = 1e-15
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTS--IAERTILEADQNGDQMISFDE 141
FK+YD+D + I R ELL ++ + N E +T+ + D NGD +S +E
Sbjct: 93 YFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
Query: 142 FCKALERTK 150
F + +++ +
Sbjct: 153 FMEGVQKDE 161
Score = 44.0 bits (104), Expect = 3e-06
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148
++ E + + S + E+ D N D I F E+ AL
Sbjct: 25 TECPSGQLTLYEFKQFFGLK-NLSPSANKY---VEQMFETFDFNKDGYIDFMEYVAALSL 80
Query: 149 TKKKKKKKKKKH 160
K K +K +
Sbjct: 81 VLKGKVDQKLRW 92
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 68.7 bits (168), Expect = 2e-15
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM-------VGANISEEQLTSIAERTILEADQNGDQM 136
AF++YDL++D I+ DE+L ++ + V N E ++ D+N D
Sbjct: 104 AFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGY 163
Query: 137 ISFDEFCKALER 148
I+ DEF + +
Sbjct: 164 ITLDEFREGSKV 175
Score = 31.4 bits (71), Expect = 0.085
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
++R++ + + A D++ + I F+EF L
Sbjct: 35 LRDCPSGQLAREDFVKIYKQFFP----FGSPEDFANHLFTVFDKDNNGFIHFEEFITVLS 90
Query: 148 RTKKKKKKKK 157
T + ++K
Sbjct: 91 TTSRGTLEEK 100
Score = 25.6 bits (56), Expect = 8.2
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+F F ++D DN+ I +E + VL + E+ D N D I+
Sbjct: 63 DFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEK-----LSWAFELYDLNHDGYIT 117
Query: 139 FDEFCKALERTKKKKKKKKK 158
FDE + K
Sbjct: 118 FDEMLTIVASVYKMMGSMVT 137
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 68.3 bits (167), Expect = 4e-15
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 83 VAFKMYDLDNDDAISRDELLAVLHMM-------VGANISEEQLTSIAERTILEADQNGDQ 135
AF++YDLDN+ IS DE+L ++ + V E+ + D+N D
Sbjct: 103 WAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDG 162
Query: 136 MISFDEFCKALER 148
++ +EFC+ +R
Sbjct: 163 QLTLEEFCEGSKR 175
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 85 FKMY-DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+K + +++ E + AE D + + I F EF
Sbjct: 31 YKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA----FAEYVFNVFDADKNGYIDFKEFI 86
Query: 144 KALERTKKKKKKKK 157
AL T + + K
Sbjct: 87 CALSVTSRGELNDK 100
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 67.9 bits (166), Expect = 5e-15
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGA-------NISEEQLTSIAERTILEADQNGDQM 136
AFK+YDLDND I+R+E+L ++ + E +R D+N D
Sbjct: 104 AFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGK 163
Query: 137 ISFDEFCKALER 148
++ EF + +
Sbjct: 164 LTLQEFQEGSKA 175
Score = 33.7 bits (77), Expect = 0.012
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+ + T A D+N D I F EF +AL
Sbjct: 35 IKDCPSGQLDAAGFQKIYKQFFP----FGDPTKFATFVFNVFDENKDGRIEFSEFIQALS 90
Query: 148 RTKKKKKKKKKKH 160
T + +K +
Sbjct: 91 VTSRGTLDEKLRW 103
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 68.4 bits (167), Expect = 6e-15
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQM 136
AF +YD++ D I+++E+L ++ + E+ E + D+N D +
Sbjct: 143 AFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGV 202
Query: 137 ISFDEFCKALER 148
++ DEF ++ ++
Sbjct: 203 VTIDEFIESCQK 214
Score = 35.6 bits (82), Expect = 0.004
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148
+ ++ + + + T+ A D + + +SF++F K L
Sbjct: 75 NECPSGVVNEETFKEIYSQF----FPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSI 130
Query: 149 TKKKKKKKK 157
+ ++K
Sbjct: 131 LLRGTVQEK 139
Score = 27.2 bits (60), Expect = 2.5
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F +D D++ A+S ++ + L ++ + ++ + A D N D I+ +E
Sbjct: 108 FNAFDTDHNGAVSFEDFIKGLSIL--LRGTVQEKLNWAFNLY---DINKDGYITKEEMLD 162
Query: 145 ALERTKK 151
++
Sbjct: 163 IMKAIYD 169
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 66.8 bits (163), Expect = 1e-14
Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQM 136
F +YD++ D I+++E++ ++ + E+ + + D+N D +
Sbjct: 97 TFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGI 156
Query: 137 ISFDEFCKALER 148
++ DEF ++ +
Sbjct: 157 VTLDEFLESXQE 168
Score = 32.5 bits (74), Expect = 0.029
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+ ++ + + ++ A D + F++F AL
Sbjct: 28 KNEXPSGVVNEETFKQIYAQF----FPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALS 83
Query: 148 RTKKKKKKKKKKH 160
+ +K +
Sbjct: 84 ILLRGTVHEKLRW 96
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 66.4 bits (162), Expect = 2e-14
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANIS-------EEQLTSIAERTILEADQNGDQM 136
AF MYDLD + IS+ E+L ++ + S E E+ + D N D
Sbjct: 104 AFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGK 163
Query: 137 ISFDEFCKALER 148
+S +EF + +
Sbjct: 164 LSLEEFIRGAKS 175
Score = 40.6 bits (95), Expect = 6e-05
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+S +E + + AE D NGD I F EF AL
Sbjct: 35 LRDCPSGHLSMEEFKKIYGNF----FPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS 90
Query: 148 RTKKKKKKKKKKH 160
T + K ++K K
Sbjct: 91 VTSRGKLEQKLKW 103
Score = 26.0 bits (57), Expect = 5.2
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F+ +D + D I E + L + E++L + D +G+ IS E +
Sbjct: 69 FRTFDANGDGTIDFREFIIALSVTSRGK-LEQKL----KWAFSMYDLDGNGYISKAEMLE 123
Query: 145 ALERTKKKKKKKKK 158
++ K K
Sbjct: 124 IVQAIYKMVSSVMK 137
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 66.9 bits (163), Expect = 2e-14
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHM-------MVGANISEEQLTSIAERTILEADQNGDQM 136
F +YD++ D I+++E++ ++ + E+ + + D+N D +
Sbjct: 130 TFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGI 189
Query: 137 ISFDEFCKALERTK 150
++ DEF ++ +
Sbjct: 190 VTLDEFLESCQEDD 203
Score = 33.0 bits (75), Expect = 0.025
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+ ++ + + ++ A D + F++F AL
Sbjct: 61 KNECPSGVVNEETFKQIYAQFFP----HGDASTYAHYLFNAFDTTQTGSVKFEDFVTALS 116
Query: 148 RTKKKKKKKKKKH 160
+ +K +
Sbjct: 117 ILLRGTVHEKLRW 129
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F +D ++ ++ + L +++ E+L T D N D I+ +E
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGT-VHEKL----RWTFNLYDINKDGYINKEEMMD 149
Query: 145 ALERTKK 151
++
Sbjct: 150 IVKAIYD 156
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 66.0 bits (161), Expect = 4e-14
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 84 AFKMYDLDNDDAISRDELLAVLH-MMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
FK+YD D + +I ++ELL + + + D N D ++ +EF
Sbjct: 98 YFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEF 157
Query: 143 CKALER 148
+ +
Sbjct: 158 INGMAK 163
Score = 41.7 bits (98), Expect = 3e-05
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F + E +L + G N + ++ D N D + F EF
Sbjct: 27 TFM--MEYPSGLQTLHEFKTLLGLQ-GLNQKANKH---IDQVYNTFDTNKDGFVDFLEFI 80
Query: 144 KALERTKKKKKKKK 157
A+ ++K ++K
Sbjct: 81 AAVNLIMQEKMEQK 94
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 65.5 bits (159), Expect = 1e-13
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHM---MVGAN----ISEEQLTSIAERTILEADQNGDQM 136
AF +YD++ D I+++E+LA++ M+G + + E+ ER + D+N D +
Sbjct: 170 AFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGV 229
Query: 137 ISFDEFCKALER 148
++ DEF + ++
Sbjct: 230 VTIDEFLETCQK 241
Score = 30.8 bits (69), Expect = 0.16
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+ + D + + T+ A D +G+ I F++F L
Sbjct: 101 KNECPTGLVDEDTFKLIYSQFFP----QGDATTYAHFLFNAFDADGNGAIHFEDFVVGLS 156
Query: 148 RTKKKKKKKK 157
+ +K
Sbjct: 157 ILLRGTVHEK 166
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 63.5 bits (154), Expect = 3e-13
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 82 MVAFKMYDLDNDDAISRDELLAVLHMMVGAN---------ISEEQLTSIAERTILEADQN 132
AF +YD+D + IS++E+L ++ + E AE+ +N
Sbjct: 110 EWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKN 169
Query: 133 GDQMISFDEFCKALER 148
D ++ EF +
Sbjct: 170 DDDKLTEKEFIEGTLA 185
Score = 34.2 bits (78), Expect = 0.009
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 148
I++ + ++ + + A+ D N D + F E+ AL
Sbjct: 44 KDCPTGRITQQQFQSIYAKF----FPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHM 99
Query: 149 TKKKKKKKK 157
T K +K
Sbjct: 100 TTAGKTNQK 108
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 60.3 bits (147), Expect = 3e-13
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQMISFDEF 142
AFK D + D ++ EL + + +S++++ + + I AD+N D IS +EF
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEF 71
Query: 143 CKALERTKKKKK 154
A + K
Sbjct: 72 LNANAELLCQLK 83
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 63.3 bits (154), Expect = 4e-13
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 7/94 (7%)
Query: 54 FAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI 113
+ + + E + + + D D D + DEL ++ ++
Sbjct: 103 WVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF---DV 159
Query: 114 SEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+E A +AD + + E
Sbjct: 160 PQEA----AYTFFEKADTDKSGKLERTELVHLFR 189
Score = 53.7 bits (129), Expect = 1e-09
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM---VGANISE-EQLTSIAERTILEADQNGDQMISF 139
F +DLD+D + DE+L M V A + E++ L +
Sbjct: 41 RFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLR 100
Query: 140 DEFCKALERTKKKKKKKKKKH 160
+++ +A + +++++++
Sbjct: 101 EDWVEANRVFAEAERERERRG 121
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 59.1 bits (144), Expect = 1e-12
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK++D + D I DE ++ + +++ ++ + EAD++G+ +I EF
Sbjct: 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA----MKEADEDGNGVIDIPEFM 68
Query: 144 KALERTKKKKK 154
++++K K
Sbjct: 69 DLIKKSKNALK 79
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 61.8 bits (150), Expect = 1e-12
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 75 QMFGEFRM-VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 133
++ F + V F D + + +E + + E ++ E D+NG
Sbjct: 125 YIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAAL----FKELDKNG 180
Query: 134 DQMISFDEFCKALERTKK 151
++FDEF K
Sbjct: 181 TGSVTFDEFAAWASAVKL 198
Score = 48.0 bits (114), Expect = 2e-07
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER-----TILEADQNGDQMIS 138
FK +D + + DE+ + ++ + ++ I +R L +
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 139 FDEFCKALERTKKKKKKKK 157
F EF + +
Sbjct: 113 FVEFLEFRLMLCYIYDFFE 131
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 59.9 bits (146), Expect = 2e-12
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FK D++ D A+S +E+ A + A +E+ L I D +G+ I +EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLLQLI----FKSIDADGNGEIDQNEFA 59
Query: 144 KALERTKKKKKKKKKKH 160
K + + K
Sbjct: 60 KFYGSIQGQDLSDDKIG 76
Score = 54.8 bits (133), Expect = 1e-10
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+K+ D+D D ++++E+ + E++ +++AD NGD I+ +EF
Sbjct: 80 LYKLMDVDGDGKLTKEEVTSFF-----KKHGIEKVAEQ----VMKADANGDGYITLEEFL 130
Query: 144 K 144
+
Sbjct: 131 E 131
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 61.0 bits (148), Expect = 3e-12
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM------------VGANISEEQLTSIAERTILEADQ 131
FK+YD D + I R ELL ++ + + +R L D+
Sbjct: 100 TFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDE 159
Query: 132 NGDQMISFDEFCKALERTK 150
NGD +S +EF + R K
Sbjct: 160 NGDGQLSLNEFVEGARRDK 178
Score = 42.5 bits (100), Expect = 1e-05
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 86 KMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 145
K + + E + ++ E D NGD I F E+ A
Sbjct: 30 KFLEECPSGTLFMHEFKRFFKVPDNEEATQY-----VEAMFRAFDTNGDNTIDFLEYVAA 84
Query: 146 LERTKKKKKKKK 157
L + + K
Sbjct: 85 LNLVLRGTLEHK 96
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 60.5 bits (147), Expect = 3e-12
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 54 FAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI 113
F K A E + E+ F ++D D I+ DE A + G +
Sbjct: 88 FLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS-GISP 146
Query: 114 SEEQLTSIAERTILEADQNGDQMISFDEFCK 144
S+E E T D + + DE +
Sbjct: 147 SQEDC----EATFRHCDLDNAGDLDVDEMTR 173
Score = 47.8 bits (114), Expect = 2e-07
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTS-IAERTILEADQNG 133
+ F D++ + I+ DE+++ + A + + E
Sbjct: 21 RHKH-MFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEY 79
Query: 134 DQMISFDEFCKALERTKKKKKKKKKKHN 161
+ I+F +F ++ + KK ++
Sbjct: 80 GKEIAFPQFLDGWKQLATSELKKWARNE 107
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 60.3 bits (147), Expect = 4e-12
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM-VGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
FK +D+D + IS +EL + + + ++ + S+ + E D NGD I F EF
Sbjct: 134 PFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSL----LQEVDLNGDGEIDFHEF 189
Query: 143 CKALERTKKKK 153
+ KKK
Sbjct: 190 MLMM---SKKK 197
Score = 53.0 bits (128), Expect = 2e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F D+DN +S E+L L + G + + + + D N I + +F
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQV----LRDIDSNASGQIHYTDFL 116
Query: 144 KALERTKKKKKKKKKKH 160
A T K+ KK+
Sbjct: 117 AA---TIDKQTYLKKEV 130
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 57.1 bits (139), Expect = 4e-12
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+ F+ +D + D +S DE V ++E + E D +G+ ++
Sbjct: 2 SAKR-VFEKFDKNKDGKLSLDEFREVALAF-SPYFTQEDIVKF----FEEIDVDGNGELN 55
Query: 139 FDEFCKALER 148
DEF +E+
Sbjct: 56 ADEFTSCIEK 65
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 59.4 bits (144), Expect = 7e-12
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+ D D D +S E A L + G ++++++ + D N + IS DEF
Sbjct: 107 MYDCIDTDKDGYVSLPEFKAFLQAV-GPDLTDDKAITC----FNTLDFNKNGQISRDEFL 161
Query: 144 KALER 148
+
Sbjct: 162 VTVND 166
Score = 46.3 bits (110), Expect = 5e-07
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANI----SEEQLTSIAERTILEADQNGDQMISF 139
+ D+ D ISR++ + + E+ R + IS
Sbjct: 19 RMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISV 78
Query: 140 DEFCKALERTKKKKKKKKKKH 160
+E + K K ++K
Sbjct: 79 EEAAVNATDSLLKMKGEEKAM 99
Score = 34.3 bits (79), Expect = 0.008
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 88 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL--EADQNGDQMISFDEFCKA 145
L IS +E + EE+ ++ + I+ D + D +S EF
Sbjct: 68 LGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAF 127
Query: 146 L 146
L
Sbjct: 128 L 128
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 56.7 bits (138), Expect = 7e-12
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+ +D D D I+ DEL + + G + +E+L ++ I EAD + D ++++EF
Sbjct: 11 AFRAFDQDGDGHITVDELRRAMAGL-GQPLPQEELDAM----IREADVDQDGRVNYEEFA 65
Query: 144 K 144
+
Sbjct: 66 R 66
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 59.0 bits (143), Expect = 1e-11
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 52 EVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGA 111
+ K + A E + + F + D D + AI+ DE A G
Sbjct: 82 PAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA-GI 140
Query: 112 NISEEQLTSIAERTILEADQNGDQMISFDEFCKA 145
S E E T D + + DE +
Sbjct: 141 IQSSEDC----EETFRVCDIDESGQLDVDEMTRQ 170
Score = 46.0 bits (109), Expect = 7e-07
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGD 134
+ F D++++ IS DE++ +V GA + + +EA G
Sbjct: 17 RHKH-MFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD----AVEAFFGGA 71
Query: 135 -----QMISFDEFCKALERTKKKKKKKKKKH 160
+ + + ++ + +K K+
Sbjct: 72 GMKYGVETDWPAYIEGWKKLATDELEKYAKN 102
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 56.4 bits (137), Expect = 1e-11
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK++D D + IS EL V+ + G +++E++ + I EAD +GD ++++EF
Sbjct: 14 AFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQM----IKEADLDGDGQVNYEEFV 68
Query: 144 KALERTKKKKKKKKKK 159
K + +
Sbjct: 69 KMMMTVRGGGGGNGWS 84
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 58.4 bits (142), Expect = 2e-11
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D+DND I+ EL +L+ ++ + +R I + D+N D I F EF
Sbjct: 127 AFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFS 186
Query: 144 K 144
+
Sbjct: 187 E 187
Score = 53.0 bits (128), Expect = 2e-09
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F + D D I++++L L G + + + + D +G I + EF
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKD-GLKLPYN-----FDLLLDQIDSDGSGKIDYTEFI 110
Query: 144 KALERTKKKKKKK 156
A K+ KK
Sbjct: 111 AAALDRKQLSKKL 123
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 57.2 bits (139), Expect = 3e-11
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+ +D + D IS EL + ++G + + I I + D NGD + F+EF
Sbjct: 93 AFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEI----IRDVDLNGDGRVDFEEFV 148
Query: 144 KALER 148
+ + R
Sbjct: 149 RMMSR 153
Score = 54.5 bits (132), Expect = 3e-10
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E R AF+ +D D D I+ +L + M G +E +L + + + N +
Sbjct: 12 ELRE-AFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIEL----SQQINMNLGGHVD 65
Query: 139 FDEFCKALERTKKKKKKKK 157
FD+F + + +
Sbjct: 66 FDDFVELMGPKLLAETADM 84
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 58.9 bits (143), Expect = 4e-11
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 74 YQMFGEFRM-VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 132
+F E R+ AF ++D D I+++EL ++ +ISE+ + + EADQN
Sbjct: 429 QILFSEERLRRAFNLFDTDKSGKITKEELA---NLFGLTSISEKTWNDV----LGEADQN 481
Query: 133 GDQMISFDEFCKALER 148
D MI FDEF + +
Sbjct: 482 KDNMIDFDEFVSMMHK 497
Score = 45.1 bits (107), Expect = 3e-06
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER--TILEA-DQNGDQMISFD 140
FK D + D + + EL+ +++ +L ++ E IL+ D + + I +
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 141 EFCKA 145
EF
Sbjct: 420 EFISV 424
Score = 28.5 bits (64), Expect = 0.95
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 103 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKKK 158
A + + + E+ + + + D+NGD + E + + K + +
Sbjct: 339 AAILFIGSKLTTLEERKELTD-IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGE 393
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 58.5 bits (142), Expect = 5e-11
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 74 YQMFGEFRMV-AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 132
+ RM AFKM+D D IS EL + ++I E+L SI I + D N
Sbjct: 411 TILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA-DSSIQMEELESI----IEQVDNN 465
Query: 133 GDQMISFDEFCKAL 146
D + F+EF + L
Sbjct: 466 KDGEVDFNEFVEML 479
Score = 42.4 bits (100), Expect = 2e-05
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE---------ADQNGD 134
F+ D +ND + RDEL+ H + + E + +E D +G
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 135 QMISFDEFCKA 145
I + EF +
Sbjct: 396 GSIEYSEFIAS 406
Score = 29.3 bits (66), Expect = 0.61
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 103 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKKKK 159
A L M + ++ + E + D N D M+ DE + + K
Sbjct: 315 AALLYMASKLTTLDETKQLTE-IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNS 370
Score = 28.5 bits (64), Expect = 1.2
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 51 DEVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVA--FKMYDLDNDDAISRDELLAVLHMM 108
DE+ G + ++ D+ + + + + + D+D +I E +A
Sbjct: 351 DELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIA----- 405
Query: 109 VGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCKALER 148
+ I L ++ + A D++G IS E K +
Sbjct: 406 --SAIDRTIL--LSRERMERAFKMFDKDGSGKISTKELFKLFSQ 445
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 55.0 bits (133), Expect = 6e-11
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++ D D + IS EL V+ + G +++E++ + I EAD +GD ++++EF
Sbjct: 34 AFRVEDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEM----IREADIDGDGQVNYEEFV 88
Query: 144 K 144
+
Sbjct: 89 Q 89
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 56.9 bits (138), Expect = 6e-11
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+ +D D I+ +EL + + +E + + E D+N D + F+EF
Sbjct: 128 AFQQFDSDGSGKITNEELG---RLFGVTEVDDETWHQV----LQECDKNNDGEVDFEEFV 180
Query: 144 KALER 148
+ +++
Sbjct: 181 EMMQK 185
Score = 47.7 bits (114), Expect = 1e-07
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 84 AFKMYDLDNDDAISRDELLAVLH----------MMVGANISEEQLTSIAERTILEADQNG 133
F+ D + D + R EL+ + ++ E ++ I + D +
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHI----LQSVDFDR 100
Query: 134 DQMISFDEFCKALERTKKKKKKKKKKH 160
+ I + EF K+ ++
Sbjct: 101 NGYIEYSEFVTV---CMDKQLLLSRER 124
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 58.6 bits (142), Expect = 7e-11
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 74 YQMFGEFRM-VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 132
+ R+ AF+M+D DN IS EL + +++ E S+ + E D+N
Sbjct: 412 KTLLSRERLERAFRMFDSDNSGKISSTELA---TIFGVSDVDSETWKSV----LSEVDKN 464
Query: 133 GDQMISFDEFCKALER 148
D + FDEF + L +
Sbjct: 465 NDGEVDFDEFQQMLLK 480
Score = 42.8 bits (101), Expect = 2e-05
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLH------MMVGANISEEQLTSIAERTILEADQNGDQMI 137
F D + D + R EL+ + + + ++ + D + + I
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
Query: 138 SFDEFCKA 145
+ EF
Sbjct: 400 EYSEFVTV 407
Score = 32.7 bits (75), Expect = 0.044
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 103 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKKKKHN 161
A L M S+++ + + D+NGD + E + + + K + +
Sbjct: 319 AALLYMGSKLTSQDETKELTA-IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLD 376
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 54.9 bits (133), Expect = 9e-11
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVL--HMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F++ D D I +EL VL G ++++ + ++ + D + D I DE
Sbjct: 46 VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKAL----LAAGDSDHDGKIGADE 101
Query: 142 FCK 144
F K
Sbjct: 102 FAK 104
Score = 25.6 bits (57), Expect = 4.1
Identities = 6/65 (9%), Positives = 17/65 (26%), Gaps = 15/65 (23%)
Query: 87 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 142
+ + ++ ++ Q+ E D++ I +E
Sbjct: 15 ISAFKDPGTFDYKRFFH---LVGLKGKTDAQV--------KEVFEILDKDQSGFIEEEEL 63
Query: 143 CKALE 147
L+
Sbjct: 64 KGVLK 68
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 55.6 bits (135), Expect = 1e-10
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++YD + + IS D + +L + +S E L ++ I E D +G + F+EF
Sbjct: 96 AFRLYDKEGNGYISTDVMREILAEL-DETLSSEDLDAM----IDEIDADGSGTVDFEEFM 150
Query: 144 K 144
Sbjct: 151 G 151
Score = 50.6 bits (122), Expect = 9e-09
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 79 EFRMVAFKMYD-LDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 137
AF+ ++ + +S D++ +L ++ G ++ + + I E D G+ I
Sbjct: 14 LLET-AFRDFETPEGSGRVSTDQIGIILEVL-GIQQTKSTIRQL----IDEFDPFGNGDI 67
Query: 138 SFDEFCKALERTKKKKKKKK 157
FD F R ++ +
Sbjct: 68 DFDSFKIIGARFLGEEVNPE 87
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 57.4 bits (139), Expect = 1e-10
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 74 YQMFGEFRM-VAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN 132
+ + ++ AF+ +D D + IS DEL + ++ + + I D N
Sbjct: 420 KSLLSKDKLESAFQKFDQDGNGKISVDELA---SVFGLDHLESKTWKEM----ISGIDSN 472
Query: 133 GDQMISFDEFCKALER 148
D + F+EFCK +++
Sbjct: 473 NDGDVDFEEFCKMIQK 488
Score = 43.5 bits (103), Expect = 7e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLT---SIAERTILEADQNGDQMISFD 140
F+ D + D + R EL+ + G ++ L S + + AD + + I +
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 141 EFCKA 145
EF
Sbjct: 411 EFVTV 415
Score = 33.1 bits (76), Expect = 0.027
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 103 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKK 157
A L M S+E+ + + D+NGD + E + ++
Sbjct: 330 AALLYMASKLTSQEETKELTD-IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVF 383
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 54.2 bits (131), Expect = 1e-10
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDE 141
AF + D D I DEL L + +++ + + + D +GD I DE
Sbjct: 47 AFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAF----LKAGDSDGDGAIGVDE 102
Query: 142 FCK 144
+
Sbjct: 103 WAA 105
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 55.3 bits (134), Expect = 2e-10
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+++D + D I +EL +L G +++EE + + + ++D+N D I FDEF
Sbjct: 101 CFRIFDKNADGFIDIEELGEILRAT-GEHVTEEDIEDL----MKDSDKNNDGRIDFDEFL 155
Query: 144 KALERTK 150
K +E +
Sbjct: 156 KMMEGVQ 162
Score = 53.7 bits (130), Expect = 6e-10
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF M+D D IS EL V+ M+ G N ++E+L +I I E D++G I
Sbjct: 21 EFKA-AFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAI----IEEVDEDGSGTID 74
Query: 139 FDEFCKALER 148
F+EF + R
Sbjct: 75 FEEFLVMMVR 84
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 54.0 bits (130), Expect = 2e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+ +D + ISR+E A+ + +++EQ +R E N + + +F
Sbjct: 29 EFENFDTMKTNTISREEFRAICNRR-VQILTDEQF----DRLWNEMPVNAKGRLKYPDFL 83
Query: 144 KALERTKK 151
Sbjct: 84 SRFSSETA 91
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF +D D I+ DEL + + ++ + + + DQ+ D I ++EF
Sbjct: 104 AFTYFDKDGSGYITPDELQQACEEF---GVEDVRIEEL----MRDVDQDNDGRIDYNEFV 156
Query: 144 KALERT 149
+++
Sbjct: 157 AMMQKG 162
Score = 54.1 bits (131), Expect = 4e-10
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F M D D I+ +EL A L + GAN+ E ++ + + AD + I + EF
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRV-GANLKESEILDL----MQAADVDNSGTIDYKEFI 86
Query: 144 KALERTKKKKKKKKKKH 160
A T K +++ H
Sbjct: 87 AA---TLHLNKIEREDH 100
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 53.4 bits (129), Expect = 2e-10
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF M+D D IS EL V+ M+ G N ++E+L +I I E D++G I
Sbjct: 21 EFKA-AFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAI----IEEVDEDGSGTID 74
Query: 139 FDEFCKALER 148
F+EF + R
Sbjct: 75 FEEFLVMMVR 84
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 52.6 bits (127), Expect = 3e-10
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+ FK +D + D IS EL L + +++ +++ + + E D +GD IS
Sbjct: 12 DRER-IFKRFDTNGDGKISSSELGDALKTL--GSVTPDEVRRM----MAEIDTDGDGFIS 64
Query: 139 FDEFCKALERTKKKKKKKKK 158
FDEF + K K
Sbjct: 65 FDEFTDFARANRGLVKDVSK 84
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 54.0 bits (131), Expect = 3e-10
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK++D D IS L V + G N+++E+L + I EAD++GD +S EF
Sbjct: 84 AFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELQEM----IDEADRDGDGEVSEQEFL 138
Query: 144 K 144
+
Sbjct: 139 R 139
Score = 53.6 bits (130), Expect = 4e-10
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E R AF ++D D I EL + + G +E++ + I E D+ G ++
Sbjct: 7 EIRE-AFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIKKM----ISEIDKEGTGKMN 60
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
F +F + T+K +K K+
Sbjct: 61 FGDFLTVM--TQKMSEKDTKEE 80
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 53.3 bits (129), Expect = 3e-10
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVL--HMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
AF + D D I DEL L +++ + + + + D++GD MI DE
Sbjct: 46 AFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAF----LADGDKDGDGMIGVDE 101
Query: 142 FCK 144
F
Sbjct: 102 FAA 104
Score = 25.2 bits (56), Expect = 5.5
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 87 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 142
+ D+ E A + A+ S + + +A DQ+ I DE
Sbjct: 15 LAACSAADSFKHKEFFA---KVGLASKSLDDV--------KKAFYVIDQDKSGFIEEDEL 63
Query: 143 CKALE 147
L+
Sbjct: 64 KLFLQ 68
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 53.9 bits (130), Expect = 4e-10
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F + I+ + L ++ +S+E + + E D +GD ++ EFC
Sbjct: 45 GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGM----VREGDLDGDGALNQTEFC 100
Query: 144 KALERTKKKKKKKKKKH 160
+ R + + +
Sbjct: 101 VLMVRLSPEMMEDAETW 117
Score = 25.0 bits (55), Expect = 8.0
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 126 ILEADQNGDQMISFDEFCKA 145
+LE +++
Sbjct: 9 LLETTSTTKMETKYEDMLPV 28
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 54.3 bits (131), Expect = 4e-10
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+ F+ D + D+ ISRDE M+ + + A + D N D ++S
Sbjct: 94 GPLPLFFRAVDTNEDNNISRDEYGIFFGML---GLDKTM----APASFDAIDTNNDGLLS 146
Query: 139 FDEFCKA 145
+EF A
Sbjct: 147 LEEFVIA 153
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLH-MMVGANISEEQLTSIAER-----TILEADQNGDQMI 137
F D D D AI+R + ++ + + E + + G + I
Sbjct: 11 YFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGI 70
Query: 138 SFDEFCKALERTKKKKKKKKK 158
F +++ K + K
Sbjct: 71 DETTFINSMKEMVKNPEAKSV 91
Score = 38.5 bits (90), Expect = 2e-04
Identities = 10/59 (16%), Positives = 17/59 (28%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 147
+ I + + MV ++ + D N D IS DE+
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 54.1 bits (131), Expect = 5e-10
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D DN I+ +L V + G N++EE+L + I EAD+N D I DEF
Sbjct: 106 AFRLFDDDNSGTITIKDLRRVAKEL-GENLTEEELQEM----IAEADRNDDNEIDEDEFI 160
Query: 144 KALERT 149
+ +++T
Sbjct: 161 RIMKKT 166
Score = 52.6 bits (127), Expect = 2e-09
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E R AF ++D D I EL + + G +E++ + I E D++G I
Sbjct: 29 EIRE-AFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEIKKM----ISEIDKDGSGTID 82
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
F+EF + T K ++ ++
Sbjct: 83 FEEFLTMM--TAKMGERDSREE 102
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 54.4 bits (131), Expect = 5e-10
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 75 QMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD 134
++ G M D + D I+ DE A L + +S+ + A + D NG+
Sbjct: 98 RVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL---GMSKAE----AAEAFNQVDTNGN 150
Query: 135 QMISFDEFCKAL 146
+S DE A+
Sbjct: 151 GELSLDELLTAV 162
Score = 49.4 bits (118), Expect = 3e-08
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMV---GANISEEQL-------TSIAERTILEADQNG 133
F +D D + A+ R + + G + ++ + + EA
Sbjct: 12 RFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGS 71
Query: 134 DQMISFDEFCKALERTKKKKK 154
D ++ ++F + E ++
Sbjct: 72 DGSLTEEQFIRVTENLIFEQG 92
Score = 36.7 bits (85), Expect = 0.001
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 89 DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEFCK 144
+ +D +++ ++ + V ++ E + + D+N D I+ DEF
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQ-GEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA 126
Query: 145 ALER 148
L
Sbjct: 127 WLTA 130
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 54.1 bits (131), Expect = 5e-10
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+M+D + D I +EL +L G I+E+ + + + + D+N D I +DEF
Sbjct: 100 LFRMFDKNADGYIDLEELKIMLQAT-GETITEDDIEEL----MKDGDKNNDGRIDYDEFL 154
Query: 144 K 144
+
Sbjct: 155 E 155
Score = 47.9 bits (115), Expect = 8e-08
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 79 EFRMVAFKMYDLD-NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMI 137
EF+ AF ++ L D +IS EL V+ M+ G N + E+L + I E D++G +
Sbjct: 19 EFKA-AFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEM----IDEVDEDGSGTV 72
Query: 138 SFDEFCKALERTKKKKKKKKKK 159
FDEF + R+ K K K +
Sbjct: 73 DFDEFLVMMVRSMKDDSKGKSE 94
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 55.6 bits (134), Expect = 5e-10
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+ D D +S++E+ VL + ++ D + + +S+ EF
Sbjct: 258 LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ----FSVVDVDDSKSLSYQEFV 313
Query: 144 K 144
Sbjct: 314 M 314
Score = 52.1 bits (125), Expect = 9e-09
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+ D +++ +SR E + S+ + AD++ + F E+
Sbjct: 193 DFRKIDTNSNGTLSRKEFREHFVRL------GFDKKSVQDALFRYADEDESDDVGFSEYV 246
Query: 144 KALERTKKKKK 154
+
Sbjct: 247 HLGLCLLVLRI 257
Score = 49.0 bits (117), Expect = 9e-08
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 5/68 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F + S +L VL I E L + + + + +S+
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKY-ADTIPEGPLKKL----FVMVENDTKGRMSYITLV 181
Query: 144 KALERTKK 151
Sbjct: 182 AVANDLAA 189
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 55.3 bits (133), Expect = 6e-10
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 82 MVAFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILEADQNGDQMIS 138
M ++ YD D+ I +EL L + + + +L + + D N D +
Sbjct: 106 MKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLE 165
Query: 139 FDEFCKALERTKKKKKKKKKKHN 161
E + L + K +
Sbjct: 166 LTEMARLLPVQENFLLKFQGIKM 188
Score = 52.6 bits (126), Expect = 5e-09
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE--RTILEADQNGDQM 136
+F + +D D + EL ++ + + L E + + Q D
Sbjct: 17 QFFE-IWLHFDADGSGYLEGKELQNLIQEL-LQARKKAGLELSPEMKTFVDQYGQRDDGK 74
Query: 137 ISFDEFCKALERTKKKKKKKKKKH 160
I E L + + +
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQ 98
Score = 49.5 bits (118), Expect = 5e-08
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF++YD D + I +EL A+L + N E + +I+ + + +
Sbjct: 196 AFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLA 255
Query: 144 KAL 146
L
Sbjct: 256 LIL 258
Score = 31.8 bits (72), Expect = 0.079
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 86 KMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDE 141
Y +D I EL VL + + ++ D + I +E
Sbjct: 65 DQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEE 124
Query: 142 FCKAL 146
L
Sbjct: 125 LKNFL 129
Score = 29.8 bits (67), Expect = 0.35
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFD 140
K++D +ND + E+ +L + + + Q + + +A DQ+G+ I +
Sbjct: 153 LKLFDSNNDGKLELTEMARLL-PVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDEN 211
Query: 141 EFCKALER 148
E L+
Sbjct: 212 ELDALLKD 219
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 53.7 bits (130), Expect = 6e-10
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D D+ IS L V + G +++E+L ++ I E D +GD I+ +EF
Sbjct: 101 AFQLFDDDHTGKISIKNLRRVAKEL-GETLTDEELRAM----IEEFDLDGDGEINENEFI 155
Query: 144 K 144
Sbjct: 156 A 156
Score = 51.0 bits (123), Expect = 6e-09
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E AF ++D++ND + EL + + G + + ++ + I E D G ++
Sbjct: 24 EIYE-AFSLFDMNNDGFLDYHELKVAMKAL-GFELPKREILDL----IDEYDSEGRHLMK 77
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
+D+F + +K K+
Sbjct: 78 YDDFYIVM--GEKILKRDPLDE 97
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 51.7 bits (125), Expect = 6e-10
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E + AF ++D + +I EL + + G ++ + ++ + + E D+ G+ I
Sbjct: 8 EIKE-AFDLFDTNKTGSIDYHELKVAMRAL-GFDVKKPEILEL----MNEYDREGNGYIG 61
Query: 139 FDEFCKALERTKKKK 153
FD+F + K +
Sbjct: 62 FDDFLDIMTEKIKNR 76
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 54.7 bits (132), Expect = 6e-10
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+ D D ++ DE L + G + + + + + D+NG + +EF
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKL-GLVLDQAEAEGV----CRKWDRNGSGTLDLEEFL 96
Query: 144 KALERTKKKKKK 155
+AL + ++
Sbjct: 97 RALRPPMSQARE 108
Score = 43.1 bits (102), Expect = 6e-06
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 84 AFKMYDLDNDDAISRDELLAVL----HMMV--GANISEEQLTSIAERTILEADQN-GDQM 136
AF D D ++ D+L V H V G +E L + D + D
Sbjct: 114 AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRF----LDNFDSSEKDGQ 169
Query: 137 ISFDEFCK 144
++ EF
Sbjct: 170 VTLAEFQD 177
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 54.2 bits (131), Expect = 7e-10
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF +D D I+ DE+ + + + + I E DQ+ D I + EF
Sbjct: 87 AFSYFDKDGSGYITLDEIQQACKDF---GLDDIHIDDM----IKEIDQDNDGQIDYGEFA 139
Query: 144 KALERTKKKKKKKKKKH 160
+ K+K +
Sbjct: 140 AMM--RKRKGNGGIGRR 154
Score = 53.8 bits (130), Expect = 8e-10
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FKM D DN I+ DEL L + G+ + E ++ + + AD + I + EF
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDL----MDAADIDKSGTIDYGEFI 69
Query: 144 KALERTKKKKKKKKKKH 160
A T K +++++
Sbjct: 70 AA---TVHLNKLEREEN 83
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 52.6 bits (127), Expect = 8e-10
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVL--HMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
FK D D I +EL VL G ++++ + + + AD++GD I DE
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAF----LKAADKDGDGKIGIDE 102
Query: 142 FCK 144
F
Sbjct: 103 FET 105
Score = 25.2 bits (56), Expect = 6.2
Identities = 6/66 (9%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 87 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFDEF 142
+ + + + + + A ++ +S + + D + I +E
Sbjct: 16 LDAVKAEGSFNHKKFFA---LVGLKAMSANDV--------KKVFKAIDADASGFIEEEEL 64
Query: 143 CKALER 148
L+
Sbjct: 65 KFVLKS 70
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 51.8 bits (125), Expect = 9e-10
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FKM D DN I+ DEL L + G+ + E ++ + + AD + I + EF
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDL----MDAADIDKSGTIDYGEFI 82
Query: 144 KA 145
A
Sbjct: 83 AA 84
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 53.8 bits (130), Expect = 1e-09
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF+ + F+ D D + +E+ A L G +SE+ ++ +
Sbjct: 82 FDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSS-GYQVSEQTFQAL----MR 136
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
+ D+ + FD++ + +
Sbjct: 137 KFDRQRRGSLGFDDYVELSIFVCR 160
Score = 45.8 bits (109), Expect = 7e-07
Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 54 FAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANI 113
G+ P +DN E F+ D D AIS EL A L G
Sbjct: 12 STGVYAPSARHMNDNQELME----------WFRAVDTDGSGAISVPELNAALSSA-GVPF 60
Query: 114 SEEQLTSIAERTILEADQNGDQMISFDEFCK 144
S + + D+N I+FDEF
Sbjct: 61 SLATTEKL----LHMYDKNHSGEITFDEFKD 87
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 51.9 bits (125), Expect = 1e-09
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVL--HMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F + D D I +EL L ++ + + + D +GD I +E
Sbjct: 47 VFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAF----LAAGDTDGDGKIGVEE 102
Query: 142 FCK 144
F
Sbjct: 103 FQS 105
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 53.3 bits (129), Expect = 1e-09
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D D + IS EL V+ + G +++E++ + I EAD +GD ++++EF
Sbjct: 89 AFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEM----IREADIDGDGQVNYEEFV 143
Query: 144 KALERTKKKKKKKKKK 159
+ + +K
Sbjct: 144 QMMTAKGGGGGAAARK 159
Score = 52.9 bits (128), Expect = 2e-09
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF ++D D D I+ EL V+ + G N +E +L + I E D +G+ I
Sbjct: 12 EFKE-AFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADGNGTID 65
Query: 139 FDEFCKALERTKKKKKKKK 157
F EF + R K ++
Sbjct: 66 FPEFLTMMARKMKDTDSEE 84
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 51.6 bits (124), Expect = 2e-09
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
F+ + +DL+ + I L +L + G + +L + I E + S
Sbjct: 33 GFKE-KYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTHLELKKL----IGEVSSGSGETFS 86
Query: 139 FDEFCK 144
+ +F +
Sbjct: 87 YPDFLR 92
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 52.5 bits (127), Expect = 2e-09
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF ++D DN +IS EL V+ + G + SE ++ + + E D +G+ I
Sbjct: 12 EFKE-AFALFDKDNSGSISASELATVMRSL-GLSPSEAEVADL----MNEIDVDGNHAIE 65
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
F EF + +++ K ++
Sbjct: 66 FSEFLALM--SRQLKCNDSEQE 85
Score = 47.5 bits (114), Expect = 9e-08
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK++D + D IS EL VL + G +++ ++ + + E +G I+ +F
Sbjct: 89 AFKVFDKNGDGLISAAELKHVLTSI-GEKLTDAEVDEM----LREVS-DGSGEINIKQFA 142
Query: 144 KALER 148
L +
Sbjct: 143 ALLSK 147
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 53.9 bits (129), Expect = 2e-09
Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 51 DEVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMM-- 108
+++ L EN F YD+ A+ E+ + M
Sbjct: 168 NDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMME 227
Query: 109 -VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
V +IS L E + D N D I E L
Sbjct: 228 LVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCL 266
Score = 53.1 bits (127), Expect = 3e-09
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 82 MVAFKMYDLDNDDAISRDEL---LAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
M ++ YD D+ IS EL L L + I +L + + D+N D +
Sbjct: 107 MKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLD 166
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
++ + L + + K
Sbjct: 167 LNDLARILALQENFLLQFKMDA 188
Score = 46.6 bits (110), Expect = 7e-07
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGA-----NISEEQLTSIAERTILEADQNGDQMIS 138
++ +D D++ I EL M+ I++E++ I + + D D +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 139 FDEFCKALERTKKKKKKKKKKHN 161
+E + ++ ++
Sbjct: 76 IEELANMILPQEENFLLIFRREA 98
Score = 28.5 bits (63), Expect = 1.0
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 75 QMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT--ILEA--- 129
+ + + YD D + +EL ++ + + + + + ++
Sbjct: 53 ERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRK 112
Query: 130 -DQNGDQMISFDEFCKALERTKKKKKKK 156
D + IS E L+ + KKK
Sbjct: 113 YDADSSGYISAAELKNFLKDLFLQHKKK 140
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 52.4 bits (126), Expect = 2e-09
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 75 QMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD 134
+M F A + D D D A++ + L + E+ A + D +GD
Sbjct: 94 EMARPFLHAALGVADTDGDGAVTVADTARALTAF---GVPEDL----ARQAAAALDTDGD 146
Query: 135 QMISFDEFCKALER 148
+ E A R
Sbjct: 147 GKVGETEIVPAFAR 160
Score = 48.6 bits (116), Expect = 6e-08
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERT-------ILEADQNG 133
F +D D + I R + M G ++ ++ AD++G
Sbjct: 9 RFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG 68
Query: 134 DQMISFDEFCKALERTKKKKKKKKKK 159
DQ I+ +EF + + K + +
Sbjct: 69 DQRITREEFVTGAVKRLRDKPDRFAE 94
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 52.1 bits (126), Expect = 2e-09
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF ++D D D I+ EL V+ + G N +E +L + I E D +G+ I
Sbjct: 11 EFKE-AFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADGNGTID 64
Query: 139 FDEFCKALERTKKKKKKKK 157
F EF + R K++ ++
Sbjct: 65 FPEFLSLMARKMKEQDSEE 83
Score = 52.1 bits (126), Expect = 2e-09
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK++D D + IS EL V+ + G ++++++ + I EAD +GD I+++EF
Sbjct: 88 AFKVFDRDGNGLISAAELRHVMTNL-GEKLTDDEVDEM----IREADIDGDGHINYEEFV 142
Query: 144 K 144
+
Sbjct: 143 R 143
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 50.3 bits (121), Expect = 2e-09
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 84 AFKMYDLDNDDA--ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
AF+++ D IS++EL V+ + G ++ + T + I E D+NGD +SF+E
Sbjct: 10 AFEVFAAKEGDPNQISKEELKLVMQTL-GPSLLKGMST--LDEMIEEVDKNGDGEVSFEE 66
Query: 142 FCKALERTKK 151
F +++ +
Sbjct: 67 FLVMMKKISQ 76
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 50.3 bits (121), Expect = 2e-09
Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E++ AF+++D DND+ ++ +EL V+ + GAN ++++++ I + + D++
Sbjct: 15 EYKE-AFQLFDKDNDNKLTAEELGTVMRAL-GANPTKQKISEI----VKDYDKDNSGKFD 68
Query: 139 FDEFCKALERTKKKK 153
+ F + ++
Sbjct: 69 QETFLTIMLEYGQEV 83
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 49.9 bits (120), Expect = 2e-09
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FK D++ D A+S +E+ A + A +E+ L + D +G+ I +EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLL----QLIFKSIDADGNGEIDQNEFA 59
Query: 144 KALERTK 150
K +
Sbjct: 60 KFYGSIQ 66
Score = 27.9 bits (63), Expect = 0.37
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 128 EADQNGDQMISFDEFCKALERTKKKKKKKK 157
E D NGD +S++E + + + K ++
Sbjct: 8 EIDVNGDGAVSYEEVKAFVSKKRAIKNEQL 37
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 51.8 bits (125), Expect = 3e-09
Identities = 10/65 (15%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D ++ +S +L +L + G +++ ++ + + + + + I + +F
Sbjct: 88 AFQVFDKESTGKVSVGDLRYMLTGL-GEKLTDAEVDEL----LKGVEVDSNGEIDYKKFI 142
Query: 144 KALER 148
+ + R
Sbjct: 143 EDVLR 147
Score = 49.1 bits (118), Expect = 2e-08
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+ F ++D AI++D L L + G N + + + I ++ ++
Sbjct: 5 ANKD-IFTLFDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINA---DSSLRDASSLT 59
Query: 139 FDEFCKALERTKKKK 153
D+ +E +K+
Sbjct: 60 LDQITGLIEVNEKEL 74
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+ D + + I EL +L + G ++ ++ + + E +GD I+++ F
Sbjct: 81 AFRALDKEGNGTIQEAELRQLLLNL-GDALTSSEVEEL----MKEVSVSGDGAINYESFV 135
Query: 144 K 144
Sbjct: 136 D 136
Score = 46.0 bits (110), Expect = 4e-07
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+ + F+++D DND +S +EL + L + G N + +L +I + +
Sbjct: 6 QIQE-CFQIFDKDNDGKVSIEELGSALRSL-GKNPTNAELNTI----KGQLNAKE---FD 56
Query: 139 FDEFCKALERTKKKKKKKKK 158
F + K ++ K
Sbjct: 57 LATFKTVYRKPIKTPTEQSK 76
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 51.9 bits (125), Expect = 4e-09
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD--------Q 135
AF D D D IS+ ++ + ++ + + + L
Sbjct: 113 AFNKIDKDEDGYISKSDI---VSLVHDKVLDNNDIDNF----FLSVHSIKKGIPREHIIN 165
Query: 136 MISFDEFCKALERT 149
ISF EF + T
Sbjct: 166 KISFQEFKDYMLST 179
Score = 51.1 bits (123), Expect = 9e-09
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F D +++ ++S E+ VL + I + + I + D N I++ EF
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLASV---GIKKWDINRI----LQALDINDRGNITYTEFM 96
Query: 144 KALERTKKKKKKK 156
R K +
Sbjct: 97 AGCYRWKNIESTF 109
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 50.8 bits (122), Expect = 4e-09
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F + D D I DEL ++L ++S ++ ++ + D++GD I +E
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTL----MAAGDKDGDGKIGVEE 101
Query: 142 FCKALERT 149
F + +
Sbjct: 102 FSTLVAES 109
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 50.9 bits (123), Expect = 5e-09
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF+++D + I+++ L VL G + + EAD G+ I
Sbjct: 7 EFKE-AFELFDSERTGFITKEGLQTVLKQF-GVRVEPAAFNEM----FNEADATGNGKIQ 60
Query: 139 FDEFCKALERTKKKKKKKKKKH 160
F EF + ++ K+ +
Sbjct: 61 FPEFLSMM--GRRMKQTTSEDI 80
Score = 45.9 bits (110), Expect = 3e-07
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+ +D + I + L L + G + + + + I +D F
Sbjct: 84 AFRTFDPEGTGYIPKAALQDALLNL-GDRLKPHEFAEF----LGITETE-KGQIRYDNFI 137
Query: 144 K 144
Sbjct: 138 N 138
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 50.0 bits (120), Expect = 6e-09
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F++ D D I DEL L ++ + + + AD +GD I +E
Sbjct: 46 IFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTF----LAAADHDGDGKIGAEE 101
Query: 142 FCK 144
F +
Sbjct: 102 FQE 104
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 52.6 bits (126), Expect = 6e-09
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF+++D D + IS EL V+ + G +++E++ + I EAD +GD ++++EF
Sbjct: 390 AFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEM----IREADIDGDGQVNYEEFV 444
Query: 144 K 144
+
Sbjct: 445 Q 445
Score = 49.9 bits (119), Expect = 5e-08
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF ++D D D I+ EL V+ + G N +E +L + I E D +G+ I
Sbjct: 313 EFKE-AFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADGNGTID 366
Query: 139 FDEFCKALER 148
F EF + R
Sbjct: 367 FPEFLTMMAR 376
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 49.1 bits (118), Expect = 6e-09
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
FK +D + D IS EL L + G+ ++E +R + E D +GD I F+EF
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTL-GSTSADE-----VQRMMAEIDTDGDGFIDFNEFI 61
Query: 144 KALERTKKKKKKKKK 158
K K
Sbjct: 62 SFCNANPGLMKDVAK 76
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 50.6 bits (122), Expect = 7e-09
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF +D + I D L +L M G ++E++ + EA + ++ EF
Sbjct: 81 AFACFDEEASGFIHEDHLRELLTTM-GDRFTDEEV----DEMYREAPIDKKGNFNYVEFT 135
Query: 144 KALERTKK 151
+ L+ K
Sbjct: 136 RILKHGAK 143
Score = 42.9 bits (102), Expect = 5e-06
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF M D + D I +++L +L M G N ++E L + I+
Sbjct: 8 EFKE-AFNMIDQNRDGFIDKEDLHDMLASM-GKNPTDEYLEGM--------MSEAPGPIN 57
Query: 139 FDEFCKALER 148
F F
Sbjct: 58 FTMFLTMFGE 67
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 49.6 bits (119), Expect = 7e-09
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F+ D D + DEL L ++E + S+ + AD +GD I DE
Sbjct: 46 IFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSL----MDAADNDGDGKIGADE 101
Query: 142 FCK 144
F +
Sbjct: 102 FQE 104
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 50.7 bits (122), Expect = 9e-09
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF V F+ YD DN I ++EL L G +S++ + I
Sbjct: 63 FSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF-GYRLSDQFHDIL----IR 117
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
+ D+ G I+FD+F + ++
Sbjct: 118 KFDRQGRGQIAFDDFIQGCIVLQR 141
Score = 42.2 bits (100), Expect = 1e-05
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+ D D IS EL L + + SI I D+ ++F EF
Sbjct: 12 VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSI----ISMFDRENKAGVNFSEFT 67
Query: 144 KALERTKK 151
+
Sbjct: 68 GVWKYITD 75
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 50.3 bits (121), Expect = 1e-08
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+++D + + + EL VL + G ++EE++ T+L ++ + I+++ F
Sbjct: 92 GFRVFDKEGNGKVMGAELRHVLTTL-GEKMTEEEV-----ETVLAGHEDSNGCINYEAFL 145
Query: 144 K 144
K
Sbjct: 146 K 146
Score = 49.5 bits (119), Expect = 2e-08
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF+++D D I + V+ + G N + ++ + ++D+ + +
Sbjct: 11 EFKE-AFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGN--PKSDELKSRRVD 66
Query: 139 FDEFCKALERTKKKKKK 155
F+ F L+ K + +
Sbjct: 67 FETFLPMLQAVAKNRGQ 83
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 50.7 bits (122), Expect = 1e-08
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AFK+ D D +I + L +L G + E++ + + + + C
Sbjct: 100 AFKVLDPDGKGSIKKSFLEELLTTG-GGRFTPEEI----KNMWAAFPPDVAGNVDYKNIC 154
Query: 144 KALERTKKKKKKK 156
+ T + +
Sbjct: 155 YVI--THGEDAEG 165
Score = 41.8 bits (99), Expect = 2e-05
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+F+ AF + D + D I +D+L M N+ E+L ++ + I+
Sbjct: 26 DFKE-AFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM--------IKEASGPIN 76
Query: 139 FDEFCKALER 148
F F
Sbjct: 77 FTVFLTMFGE 86
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 48.9 bits (117), Expect = 1e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F D + + R+E A+ + + E D + D I+F EF
Sbjct: 32 VFAACDANRSGRLEREEFRALCTEL---RVRPADA----EAVFQRLDADRDGAITFQEFA 84
Query: 144 KAL 146
+
Sbjct: 85 RGF 87
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 50.5 bits (121), Expect = 2e-08
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 15/81 (18%)
Query: 77 FGEFR---------MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF F M + E+L L + G I++ +
Sbjct: 106 FYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQL-GFYINQR-----TSLLLH 159
Query: 128 EADQNGDQMISFDEFCKALER 148
G + +
Sbjct: 160 RLFARGMAFCDLNCWIAICAF 180
Score = 48.2 bits (115), Expect = 1e-07
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 55 AGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANIS 114
+ D T +++ F D D + +EL+ G +S
Sbjct: 37 WWFPLLNTIPLDQYTRIYQW----------FMGVDRDRSGTLEINELMMGQFPG-GIRLS 85
Query: 115 EEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKK 154
+ + + D + + ISF EF + +
Sbjct: 86 PQTALRM----MRIFDTDFNGHISFYEFMAMYKFMELAYN 121
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 50.2 bits (120), Expect = 2e-08
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
++ F + D D+ I + E V I + + G M++
Sbjct: 109 KYMNFMFDVNDTSGDNIIDKHEYSTVYMSY---GIPKSD----CDAAFDTLSDGGKTMVT 161
Query: 139 FDEFCKAL 146
+ F +
Sbjct: 162 REIFARLW 169
Score = 47.5 bits (113), Expect = 2e-07
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISE----------EQLTSIAERTILE 128
+ V YD ++D I D+ + + + L I +
Sbjct: 13 KILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY 72
Query: 129 ADQNGDQMISFDEFCKALERTKKKKKKKKK 158
AD+N D+ ++ +E+ K K +K +
Sbjct: 73 ADENEDEQVTKEEWLKMWAECVKSVEKGES 102
Score = 38.7 bits (90), Expect = 3e-04
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA----DQNGDQMISFD 140
K D + D+ ++++E L + V + E L + + D +GD +I
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 141 EFCKALE 147
E+
Sbjct: 130 EYSTVYM 136
Score = 25.2 bits (55), Expect = 9.1
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 84 AFKMYDLDNDDAISRDELLAVLH 106
AF ++R+ +
Sbjct: 148 AFDTLSDGGKTMVTREIFARLWT 170
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 49.1 bits (117), Expect = 3e-08
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+ +DL+ + I L +L + G + +L + I E ++ S+ +F
Sbjct: 53 KYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTHLELKRL----IREVSSGSEETFSYSDFL 107
Query: 144 KALERTKKKKKKKKK 158
+ + + +
Sbjct: 108 RMMLGKRSAILRMIL 122
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 48.3 bits (116), Expect = 5e-08
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
++ AF ++D I + + +L G N + + I E + +
Sbjct: 6 PYKQ-AFSLFDRHGTGRIPKTSIGDLLRAC-GQNPTLAE--------ITEIESTLPAEVD 55
Query: 139 FDEFCKALERTKKKK 153
++F + L R
Sbjct: 56 MEQFLQVLNRPNGFD 70
Score = 42.5 bits (101), Expect = 7e-06
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F+++D D I EL VL + G +S E++ + + D M+++ +F
Sbjct: 81 GFQVFDKDATGMIGVGELRYVLTSL-GEKLSNEEM----DELLKGVPVK-DGMVNYHDFV 134
Query: 144 K 144
+
Sbjct: 135 Q 135
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 48.3 bits (115), Expect = 5e-08
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+ +DL+N+ I L ++ + G + ++ + I E IS+ +F
Sbjct: 55 KYMEFDLNNEGEIDLMSLKRMMEKL-GVPKTHLEMKKM----ISEVTGGVSDTISYRDFV 109
Query: 144 K 144
Sbjct: 110 N 110
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 79 EFRMVAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 136
+ + F+++D D A+ +L V + G N E + + + G++
Sbjct: 10 DLKD-VFELFDFWDGRDGAVDAFKLGDVCRCL-GINPRNEDV-----FAVGGTHKMGEKS 62
Query: 137 ISFDEFCKALERTKKKKKKKKK 158
+ F+EF A E ++
Sbjct: 63 LPFEEFLPAYEGLMDCEQGTFA 84
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDE 141
AFK +D + IS EL VL + G +S+E + I I D ++ + + +++
Sbjct: 89 AFKTFDREGQGFISGAELRHVLTAL-GERLSDEDVDEI----IKLTDLQEDLEGNVKYED 143
Query: 142 FCK 144
F K
Sbjct: 144 FVK 146
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 47.9 bits (115), Expect = 8e-08
Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF M+D ++ + + +L M G N +++++ T EA G + + +F
Sbjct: 92 AFAMFDEQETKKLNIEYIKDLLENM-GDNFNKDEM----RMTFKEAPVEGGK-FDYVKFT 145
Query: 144 KALERTKKKK 153
++ + +++
Sbjct: 146 AMIKGSGEEE 155
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E + AF M D+D D +S++++ A+ + G +++LT++ + ++
Sbjct: 19 EMKE-AFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAM--------LKEAPGPLN 68
Query: 139 FDEFCKALERTKKKK 153
F F
Sbjct: 69 FTMFLSIFSDKLSGT 83
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 48.5 bits (116), Expect = 9e-08
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF ++D + D + L L G S++++ ++ + EA +G+ +I +F
Sbjct: 131 AFNLFD-EGDGKCKEETLKRSLTTW-GEKFSQDEV----DQALSEAPIDGNGLIDIKKFA 184
Query: 144 KALERTKKKK 153
+ L + K++
Sbjct: 185 QILTKGAKEE 194
Score = 40.0 bits (94), Expect = 8e-05
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EF+ AF++ D D D IS++++ A + G +E++L S+ I+
Sbjct: 58 EFKE-AFQLIDQDKDGFISKNDIRATFDSL-GRLCTEQELDSM--------VAEAPGPIN 107
Query: 139 FDEFC 143
F F
Sbjct: 108 FTMFL 112
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 48.0 bits (115), Expect = 9e-08
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 79 EFRMVAFKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 136
E R F ++D D + ++ +L + G N +E Q+ + G++
Sbjct: 10 EVRE-VFDLFDFWDGRDGDVDAAKVGDLLRCL-GMNPTEAQV-----HQHGGTKKMGEKA 62
Query: 137 ISFDEFCKALERTKKKKKKKKKK 159
+E E K
Sbjct: 63 YKLEEILPIYEEMSSKDTGTAAD 85
Score = 44.5 bits (106), Expect = 1e-06
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDE 141
AFK +D + IS E+ VL M+ G I+E+Q I D ++ D I +++
Sbjct: 90 AFKTFDREGQGLISSAEIRNVLKML-GERITEDQCNDI----FTFCDIREDIDGNIKYED 144
Query: 142 FCKAL 146
K +
Sbjct: 145 LMKKV 149
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
+F+ AF ++D D I+ ++ + + G N + ++ I ++ I+
Sbjct: 9 DFKE-AFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGN--PSKEEMNAAAIT 64
Query: 139 FDEFCKALERTKKKK 153
F+EF L+ K
Sbjct: 65 FEEFLPMLQAAANNK 79
Score = 45.6 bits (109), Expect = 6e-07
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
+++D + + + EL VL + G ++EE++ +++ ++ + I+++ F
Sbjct: 90 GLRVFDKEGNGTVMGAELRHVLATL-GEKMTEEEV-----EELMKGQEDSNGCINYEAFV 143
Query: 144 K 144
K
Sbjct: 144 K 144
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 47.2 bits (112), Expect = 2e-07
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 7/70 (10%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
FK D+ D + +E ++ G
Sbjct: 105 NRIPFLFKGMDVSGDGIVDLEEFQNYCKNF-QLQCAD------VPAVYNVITDGGKVTFD 157
Query: 139 FDEFCKALER 148
+ + + R
Sbjct: 158 LNRYKELYYR 167
Score = 46.1 bits (109), Expect = 6e-07
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 69 TAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLH---MMVGANISEEQ-------L 118
F + ++ F D+++D +I ++ ++ + ++S+ L
Sbjct: 3 NDFQKQKIKFTFD----FFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASL 58
Query: 119 TSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKKK 158
AD N D ++S++E+ E+T K
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVAD 98
Score = 38.7 bits (90), Expect = 3e-04
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 74 YQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA---- 129
+ D++ DD +S +E LA+ + S L + + I
Sbjct: 55 QASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGM 114
Query: 130 DQNGDQMISFDEFCKALE 147
D +GD ++ +EF +
Sbjct: 115 DVSGDGIVDLEEFQNYCK 132
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 45.1 bits (107), Expect = 4e-07
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F +D ++ + +L +++ + QL SI +D + D ++ +EF
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQ---SSLPQAQLASIWN----LSDIDQDGKLTAEEFIL 72
Query: 145 ALERTKKKKKKKK 157
A+ +
Sbjct: 73 AMHLIDVAMSGQP 85
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
AF M+D D I D L +L M G N S+E++ + +A ++ ++++
Sbjct: 90 AFSMFDEDGQGFIPEDYLKDLLENM-GDNFSKEEI----KNVWKDAPLK-NKQFNYNKMV 143
Query: 144 KALERTKKK 152
+ + +
Sbjct: 144 DIKGKAEDE 152
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E + AF M D D D I ++L + + G +++L ++ + E ++
Sbjct: 17 ELKE-AFTMIDQDRDGFIGMEDLKDMFSSL-GRVPPDDELNAM----LKECPGQ----LN 66
Query: 139 FDEFCKALER 148
F F
Sbjct: 67 FTAFLTLFGE 76
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 42.8 bits (101), Expect = 3e-06
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F D D D +S E+ + + + L I D +S D+F
Sbjct: 16 FLKTDKDMDGFVSGLEVREI---FLKTGLPSTLLAHIWS----LCDTKDCGKLSKDQFAL 68
Query: 145 ALERTKKKKKK 155
A +K K
Sbjct: 69 AFHLISQKLIK 79
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 43.0 bits (101), Expect = 3e-06
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGA-----------NISEEQLTSIAERTILEADQNG 133
F ++D+++D + EL A+ + EE+ + E + D N
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 134 DQMISFDEFCKALER 148
D++++ +EF + +R
Sbjct: 86 DRLVTLEEFLASTQR 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-06
Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 79/184 (42%)
Query: 34 SYQGEEEE--ATE--QV-----------------YVVPDEVFAG--LVKPENVRPDDNTA 70
+++ E+ AT+ Q + D FAG L
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL------------- 1764
Query: 71 FWEYQMFGEFR-MVAF-KMYDLDN------------DDAISRDE-------LLAVLHMMV 109
GE+ + + + +++ A+ RDE ++A+ V
Sbjct: 1765 -------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 110 GANISEEQLTSIAERT------ILE-ADQN--GDQMI------SFDEFCKALERTKKKKK 154
A+ S+E L + ER ++E + N Q + + D L K +K
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 155 KKKK 158
+
Sbjct: 1878 DIIE 1881
Score = 32.3 bits (73), Expect = 0.058
Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 86/231 (37%)
Query: 4 LFKAIAVLARSRPPSPVEAPSLSQHSLDASSYQGEEEEATEQVYVVPDEV---FAGLV-- 58
L K A + ++A + L+ + ++ Y++ + G++
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 59 ------------KPENVRPDDN----------TAF-------WEYQMFGEFRMVAFKMYD 89
P +R TA WE F + K
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-----SFFVSVRKAIT 301
Query: 90 L--------------------DNDDAISRDE-----LLAVLHMMVGANISEEQLTSIAER 124
+ +D++ +E +L++ +N+++EQ+ +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI------SNLTQEQVQDYVNK 355
Query: 125 T--ILEADQ-------NG-DQMI------SFDEFCKALERTKKKKKKKKKK 159
T L A + NG ++ S L + K + +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Score = 30.4 bits (68), Expect = 0.31
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 31/102 (30%)
Query: 5 FKAIAVLARSRPPSPVEAPSLSQHSLDASSYQGEEEEATEQVYVVPDEVFAGLVKPENVR 64
A + RP +L + E A Q+ +F G +
Sbjct: 127 ITARIMA--KRPFDKKSNSALFRAV--------GEGNA--QLVA----IFGGQGNTD--- 167
Query: 65 PDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISR-DELLAVL 105
+Y F E R + ++ Y + D I E L+ L
Sbjct: 168 --------DY--FEELRDL-YQTYHVLVGDLIKFSAETLSEL 198
Score = 25.8 bits (56), Expect = 9.1
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 149
+D+ + EL+ V + + ++ + +L EF E
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNL--------CLTEF----ENC 94
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 42.5 bits (100), Expect = 3e-06
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F + + +++++L ++ + ++ ++ + + DQ D + F F
Sbjct: 14 TFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFF 72
Query: 144 KAL--------ERTKKKKKKKKKK 159
+ + K+K KK
Sbjct: 73 SLIAGLTIACNDYFVVHMKQKGKK 96
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 42.4 bits (100), Expect = 4e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
FK D + I + +L+ I +D + D ++ DEFC
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKS---KLPILELSHI----WELSDFDKDGALTLDEFCA 67
Query: 145 ALERTKKKKKKKK 157
A +K
Sbjct: 68 AFHLVVARKNGYD 80
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 43.6 bits (103), Expect = 4e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF+ + +K +D+D I EL G +++E + I R
Sbjct: 66 FEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA-GFHLNEHLYSMIIRR--- 121
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
+ + FD F L R
Sbjct: 122 --YSDEGGNMDFDNFISCLVRLDA 143
Score = 33.9 bits (78), Expect = 0.010
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT----ILEADQNGD 134
+FR + F +D +S EL+ +L+ V + + T + D +
Sbjct: 5 QFRRL-FAQLA-GDDMEVSATELMNILNK-VVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 135 QMISFDEFCKALERTKK 151
+ F+EF KK
Sbjct: 62 GKLGFEEFKYLWNNIKK 78
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 43.0 bits (102), Expect = 5e-06
Identities = 7/65 (10%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F +D + +++ ++ +L G +++++ + + I + FC
Sbjct: 89 MFAHFDNNCTGYLTKSQMKNILTTW-GDALTDQEAIDA----LNAFSSEDN--IDYKLFC 141
Query: 144 KALER 148
+ + +
Sbjct: 142 EDILQ 146
Score = 42.2 bits (100), Expect = 9e-06
Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
E + + + IS D + G S I + ++
Sbjct: 16 ESDV-RIYFNEKSSGGKISIDNASYNARKL-GLAPSSIDEKKI--------KELYGDNLT 65
Query: 139 FDEFCKALERTKKKKKKKK 157
++++ + L K +
Sbjct: 66 YEQYLEYLSICVHDKDNVE 84
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 42.7 bits (101), Expect = 8e-06
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F F+ + F D D + EL + +M G +S + LT+I +
Sbjct: 59 FNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLM-GYRLSPQTLTTI----VK 113
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
+NG I FD++ + +
Sbjct: 114 RYSKNG--RIFFDDYVACCVKLRA 135
Score = 31.6 bits (72), Expect = 0.069
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNGDQMISFDEFCKALERT 149
D + +EL L G N + + R I D++ + F+ F +
Sbjct: 11 GQDGEVDAEELQRCLTQS-GINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL 69
Query: 150 KK 151
Sbjct: 70 NA 71
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 41.7 bits (98), Expect = 9e-06
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F+ D IS + +S +L+ I E +D + D ++ EFC
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTK---SKLSIPELSYIWE----LSDADCDGALTLPEFCA 80
Query: 145 ALERTKKKKKKKK 157
A +K
Sbjct: 81 AFHLIVARKNGYP 93
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 41.7 bits (98), Expect = 2e-05
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF+ + F +D D + EL L M G +S + + SI
Sbjct: 92 FNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTM-GFRLSPQAVNSI----AK 146
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
NG I+FD++ + +
Sbjct: 147 RYSTNGK--ITFDDYIACCVKLRA 168
Score = 30.1 bits (68), Expect = 0.21
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 75 QMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNG 133
++G F VA D I DEL L G + R + D++
Sbjct: 34 PLYGYFAAVA------GQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 134 DQMISFDEFCKALERTKK 151
+ F+EF +
Sbjct: 87 SGTMGFNEFKELWAVLNG 104
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 40.8 bits (96), Expect = 3e-05
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 77 FGEFRMV---------AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF+ + F +D D + EL L M G ++ + + SI
Sbjct: 61 FNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTM-GFRLNPQTVNSI----AK 115
Query: 128 EADQNGDQMISFDEFCKALERTKK 151
+G I+FD++ + +
Sbjct: 116 RYSTSGK--ITFDDYIACCVKLRA 137
Score = 28.5 bits (64), Expect = 0.72
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 80 FRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERT-ILEADQNGDQMIS 138
F VA D I DEL L G + R + D++ +
Sbjct: 8 FASVA------GQDGQIDADELQRCLTQ-SGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 139 FDEFCKALERTKK 151
F+EF +
Sbjct: 61 FNEFKELWAVLNG 73
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 38.3 bits (89), Expect = 1e-04
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 85 FKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F Y D +++ EL +L + + + + + ++ + D N D + F E+
Sbjct: 19 FHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEY 78
Query: 143 C-----------KALERTKKKKKKKK 157
C + E K+ +KK
Sbjct: 79 CVFLSSIAMMSNEFFEGFPDKQPRKK 104
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 38.2 bits (89), Expect = 1e-04
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 85 FKMY---DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F Y + IS+ +L + +S+ A++ I D N D ISFDE
Sbjct: 17 FYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDE 76
Query: 142 FCKAL 146
+ +
Sbjct: 77 YWTLI 81
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 38.8 bits (89), Expect = 2e-04
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 35 YQGEEEEATEQVYVVPDEVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLD-ND 93
E +E + + + E + Y M+ F D D
Sbjct: 111 TLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPID 170
Query: 94 DAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKK 153
+S EL + ++ + R D + D+ I+ DE+ +K
Sbjct: 171 GYLSHTELAPLRAPLI-------PMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDI 223
Query: 154 KKK 156
K
Sbjct: 224 DKD 226
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 37.1 bits (86), Expect = 3e-04
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 65 PDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 124
N + +Y ++ + N + + A L + + + L I +
Sbjct: 7 SSGNPVYEKY----------YRQVEAGNTGRVLALDAAAFL---KKSGLPDLILGKIWD- 52
Query: 125 TILEADQNGDQMISFDEFCKAL 146
AD +G ++S EF AL
Sbjct: 53 ---LADTDGKGVLSKQEFFVAL 71
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 36.3 bits (84), Expect = 6e-04
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 85 FKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F Y + + + EL +++ + + E + + ++ + D NGD F EF
Sbjct: 15 FHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEF 74
Query: 143 CKAL 146
+
Sbjct: 75 MAFV 78
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 36.4 bits (84), Expect = 7e-04
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 84 AFKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F Y + +++ EL +L + + + + + ++ + D N D + F E
Sbjct: 27 TFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQE 86
Query: 142 FC-----------KALERTKKKKKKKK 157
+C + E K+ +KK
Sbjct: 87 YCVFLSCIAMMCNEFFEGFPDKQPRKK 113
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 51 DEVFAGLVKPENVRPDDNT-----AFWEYQMFGEFR---MVAFKMYDLDNDDAISRDELL 102
++F L + + T F+E F F M D + D ++ +E+
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
Query: 103 AVLHMMVGAN---ISEEQLTSIAERTILEADQNGDQMISFDEF 142
++ + AN +E+ + E D I ++
Sbjct: 122 EIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDL 164
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 85 FKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F Y D +++ EL +L + + + + + ++ + D N D + F E+
Sbjct: 16 FHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEY 75
Query: 143 CKAL 146
C L
Sbjct: 76 CVFL 79
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 35.0 bits (81), Expect = 0.001
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 84 AFKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
F+ Y D +S++EL ++ + + + + E D+NGD +SF+E
Sbjct: 12 IFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRT---LDDLFQELDKNGDGEVSFEE 68
Query: 142 FCKAL 146
F +
Sbjct: 69 FQVLV 73
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 35.5 bits (82), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 85 FKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F Y + D +S+ EL +L + I + ++ + D N D+ + F EF
Sbjct: 18 FHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEF 77
Query: 143 CKAL 146
+
Sbjct: 78 ISLV 81
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F I+ D+ + + + L I AD N D + EF
Sbjct: 39 FHSLK-PISGFITGDQARNFFFQ---SGLPQPVLAQI----WALADMNNDGRMDQVEFSI 90
Query: 145 ALERTKKKKKKKK 157
A++ K K + +
Sbjct: 91 AMKLIKLKLQGYQ 103
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
F + +S D++ VL + + L + E +D + D M+ DEF
Sbjct: 21 FDSLS-PVNGFLSGDKVKPVLLNS---KLPVDILGRVWE----LSDIDHDGMLDRDEFAV 72
Query: 145 ALERTKKKKKKKK 157
A+ +K+
Sbjct: 73 AMFLVYCALEKEP 85
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 36.5 bits (85), Expect = 0.002
Identities = 6/59 (10%), Positives = 9/59 (15%), Gaps = 8/59 (13%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
D I+ + + A S D F
Sbjct: 387 PHIHLMGDESACIAYIR----ITQYLDAGGIPRTAQSE----ETRVWHRRDGKWQIVHF 437
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 34.0 bits (78), Expect = 0.004
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 85 FKMY--DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F+ + N+ IS+ E L ++ + A ++ + +R + + D + D + F EF
Sbjct: 19 FQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEF 78
Query: 143 CKAL 146
+
Sbjct: 79 LNLI 82
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 33.6 bits (77), Expect = 0.005
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
+ +++ EL ++ + + + ++ + + D NGD + F EF +
Sbjct: 23 GSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 33.6 bits (77), Expect = 0.006
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 85 FKMYDL--DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F + + +S+ EL +L + + + ++ ++ + E D+NGD + F EF
Sbjct: 15 FHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEF 74
Query: 143 CKAL 146
+
Sbjct: 75 VVLV 78
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 35.2 bits (80), Expect = 0.007
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 77 FGEFR---------MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
EF ++ D+D ++ E+ L G + + I R
Sbjct: 594 LKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEA-GFKLPCQLHQVIVARF-- 650
Query: 128 EADQNGDQMISFDEFCKALER 148
+ + +I FD F + L R
Sbjct: 651 ---ADDELIIDFDNFVRCLVR 668
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 33.3 bits (76), Expect = 0.009
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 85 FKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F Y D +S+ EL +L+ + + ++ + E+ + + D N D + F+EF
Sbjct: 16 FHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEF 75
Query: 143 CKAL--------ERTKKKKKKKKK 158
+ + ++++KK+ K
Sbjct: 76 VVLVAALTVACNDFFQEQQKKRSK 99
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 33.2 bits (76), Expect = 0.009
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
N A+ RD+L +L I ++ + E D N D ++F EF +
Sbjct: 24 GNFHAVYRDDLKKLLETESPQYIRKKGA----DVWFKELDINTDGAVNFQEFLILV 75
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 34.0 bits (77), Expect = 0.015
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 77 FGEFR---------MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
EF + F+ +DLD ++S E+ + G + + I R
Sbjct: 596 LVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAA-GFKLPCQLHQVIVARF-- 652
Query: 128 EADQNGDQMISFDEFCKALER 148
+ + +I FD F + L R
Sbjct: 653 ---ADDELIIDFDNFVRCLVR 670
Score = 33.6 bits (76), Expect = 0.020
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 77 FGEFR---------MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 127
F EF+ +K ++ D I +EL G ++++ + I R
Sbjct: 793 FEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAA-GFHLNQHIYSMIIRRY-- 849
Query: 128 EADQNGDQMISFDEFCKALERTK 150
+D+ G+ + FD F L R
Sbjct: 850 -SDETGN--MDFDNFISCLVRLD 869
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 33.4 bits (76), Expect = 0.015
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 84 AFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILEADQNGDQMISFD 140
F+ + + +L + G IS E L + R + +SF
Sbjct: 81 VFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLR-----YSDSVGRVSFP 134
Query: 141 EFCKALERTKK 151
L R +
Sbjct: 135 SLVCFLMRLEA 145
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.1 bits (77), Expect = 0.015
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 144
+ D + D+ ++ EL L + + + + E D + + +E
Sbjct: 17 LRKADKNKDNKMNFKELKDFLKEL-NIQVDDGYA----RKIFRECDHSQTDSLEDEEIET 71
Query: 145 ALERTKKKK 153
+ ++
Sbjct: 72 FYKMLTQRA 80
Score = 26.8 bits (58), Expect = 4.5
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 111 ANISEEQLTSIAERTIL-EADQNGDQMISFDEFCKALERTKKKKKKKKKKHN 161
++ + Q + L +AD+N D ++F E L+ + +
Sbjct: 1 GSMDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKI 52
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.4 bits (71), Expect = 0.053
Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 29/144 (20%)
Query: 14 SRPPSPVEAPSLSQHSLDASSYQGEEEEATEQVYVVPDEVFAGLVKPENVRPDDNTAFWE 73
S PS V +++ G E A E + V V D + E
Sbjct: 7 SLMPSQVVKGGAFDGTMNGPFGHGYGEGAGEGIDDVEWVV-----------GKDKPTYDE 55
Query: 74 YQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 133
F + I+ + + + L I + AD +
Sbjct: 56 I----------FYTLS-PVNGKITGANAKKEMVK---SKLPNTVLGKIWK----LADVDK 97
Query: 134 DQMISFDEFCKALERTKKKKKKKK 157
D ++ +EF A K K + +
Sbjct: 98 DGLLDDEEFALANHLIKVKLEGHE 121
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 31.0 bits (70), Expect = 0.054
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 85 FKMY--DLDNDDAISRDELLAVLHMMVGANISEEQL-TSIAERTILEADQNGDQMISFDE 141
F Y L + D +++ E ++ + + +E + E + + D N D+ +SF+E
Sbjct: 18 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEE 77
Query: 142 FCKAL--------ERTKKKKKKKKKKH 160
F + E+ + + H
Sbjct: 78 FIMLMARLTWASHEKMHEGDEGPGHHH 104
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 31.0 bits (70), Expect = 0.058
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
+ +S+ E+ +LH + + + E+ ++ + D+N DQ + F E+ L
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 31.0 bits (70), Expect = 0.064
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 92 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
+ + + EL +L + E + + D N D + F E+ ++L
Sbjct: 25 DKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 30.6 bits (69), Expect = 0.072
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 85 FKMYDLDNDD--AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 142
F + ++S +E ++ + + + + + D N D + F+E+
Sbjct: 28 FFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVG---SLDEKMKSLDVNQDSELKFNEY 84
Query: 143 CK-----ALERTKKKKKKKKKK 159
+ A E KKK K +KK
Sbjct: 85 WRLIGELAKEIRKKKDLKIRKK 106
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 29.4 bits (66), Expect = 0.17
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
+ +S+ EL ++ + + R + + D+N DQ ++F E+ L
Sbjct: 24 GDKHTLSKKELKELIQKELTIGSKLQDAE--IARLMEDLDRNKDQEVNFQEYVTFL 77
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.3 bits (66), Expect = 0.20
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 91 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 146
+ +SR EL ++ + +E + + D+N DQ I F E+ L
Sbjct: 24 GSKLTLSRKELKELIKKELCLGEMKES---SIDDLMKSLDKNSDQEIDFKEYSVFL 76
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 29.4 bits (65), Expect = 0.32
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 85 FKMYDLD-NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F D D +S EL + ++ + R D + D+ I+ DE+
Sbjct: 83 FGQLDQHPIDGYLSHTELAPLRAPLI-------PMEHCTTRFFETCDLDNDKYIALDEWA 135
Query: 144 KALERTKKKKKKK 156
+K K
Sbjct: 136 GCFGIKQKDIDKD 148
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 28.2 bits (63), Expect = 0.55
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 85 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA--ERTILEADQNGDQMISFDEF 142
F Y DD I + LL ++ +S + D+N D+ I F EF
Sbjct: 16 FHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEF 74
Query: 143 C 143
Sbjct: 75 L 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.89
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 6 KAIAVLARS-RPPSPVEAPSLSQHSLDAS 33
+A+ L S + + AP+L ++ A+
Sbjct: 20 QALKKLQASLKLYADDSAPAL---AIKAT 45
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 27.4 bits (60), Expect = 2.1
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 52 EVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAISRDE---LLAVLHMM 108
EV + P N++ + + FW + M+ + I DE +L V+ +
Sbjct: 223 EVLVKIPNPGNIKRNADGHFW----VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278
Query: 109 VGANISEEQLTSIAER 124
I E
Sbjct: 279 PPFAGEH--FEQIQEH 292
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 27.6 bits (60), Expect = 2.3
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 79 EFRMVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 138
EFR F +D + ++ A L M G N+ E + R + D N +++
Sbjct: 726 EFRAS-FNHFDRKKTGMMDCEDFRACLISM-GYNMGEAEF----ARIMSIVDPNRMGVVT 779
Query: 139 FDEF 142
F F
Sbjct: 780 FQAF 783
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical,
northeast structural genomics consortium, PSI, protein
structure initiative; NMR {Caenorhabditis elegans} SCOP:
a.39.1.11
Length = 125
Score = 26.3 bits (57), Expect = 2.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 137 ISFDEFCKALERTKKKKKKKKKK 159
+FDE K L + + ++ KK
Sbjct: 81 ATFDETKKVLAFVAEDRARQSKK 103
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 27.2 bits (59), Expect = 3.0
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 85 FKMYDLDNDD-AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 143
F++ ++ + I + L + + D + FD F
Sbjct: 160 FRLTTVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFF 219
Query: 144 KALERTKKKK 153
K ++
Sbjct: 220 KFYLALLERS 229
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 3.1
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 115 EEQLTSIAERTILEADQNGDQMISFDEFCKALERTKKKKKKKKKKHN 161
EEQ + E + + + + + ++ +K K +N
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 26.4 bits (57), Expect = 5.2
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 69 TAFWEYQMFGEFRMVAFKMYDLDNDDAISRDELLAVLHM----MVGANISEEQLTSIAER 124
+ W + + V F + D++ VL +S EQLT++AE+
Sbjct: 350 SILWYNMLTNNPKNVNF----FTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEK 405
Query: 125 TILEADQNGDQMISFDEFCK 144
+ I++ +FCK
Sbjct: 406 LLGPGVNYSGCQITWAKFCK 425
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 26.2 bits (58), Expect = 5.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 115 EEQLTSIAERTILEADQNGDQMISFDEF 142
++S E + +A+ M SF++F
Sbjct: 535 MGWISSFYEAAVKQAEFKNVAMPSFEDF 562
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 26.1 bits (57), Expect = 5.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 137 ISFDEFCKALERTKKKKKKKKKKHN 161
+ + + K L + + +K K N
Sbjct: 229 LQYLLWLKQLRKISRYSEKIKIPSN 253
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG
structure initiative; 2.35A {Corynebacterium glutamicum
atcc 13032} SCOP: c.56.8.1
Length = 319
Score = 26.3 bits (57), Expect = 5.7
Identities = 11/67 (16%), Positives = 22/67 (32%)
Query: 82 MVAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 141
V Y + + +LL + N+ L AE+ + + ++
Sbjct: 198 TVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQR 257
Query: 142 FCKALER 148
ALE+
Sbjct: 258 VVGALEQ 264
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.3 bits (57), Expect = 5.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 129 ADQNGDQMISFDEFCKALERTKKKKKKK 156
+D + D M+ +EF A + K +
Sbjct: 500 SDVDRDGMLDDEEFALASHLIEAKLEGH 527
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 25.6 bits (57), Expect = 8.7
Identities = 7/61 (11%), Positives = 12/61 (19%), Gaps = 6/61 (9%)
Query: 38 EEEEATEQVYVVPDEVFAGLVKPENVRPDDNTAFWEYQMFGEFRMVAFKMYDLDNDDAIS 97
E VP + V P + ++ D +A
Sbjct: 324 RSTPPPEMPKPVPRKEVQ---AGVEVVPVAEGVY---EVRAPEVERYLARIKGDLMEAAG 377
Query: 98 R 98
Sbjct: 378 Y 378
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.360
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,455,303
Number of extensions: 144546
Number of successful extensions: 1104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 310
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)