RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17267
(465 letters)
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 115 bits (289), Expect = 2e-29
Identities = 56/155 (36%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 62 PDDVWVVTFPRSGTTWTQELVWLIANGLNYEEARTTPLT---ERFPFLEFNVFVDNVRLA 118
DDV +VT+P+SGTTW QE++ LI N ++E+ L R PFLE+ +A
Sbjct: 1 DDDVLIVTYPKSGTTWLQEILSLIPNRGDFEKFEEPHLFNPHNRSPFLEWYDLFVIFDVA 60
Query: 119 EFRAENSGNLEHQEIIDSIATPQYEQLRECTGRRFIKTHIPLSLLPPDLMTSGAKVIYVA 178
E +L R IKTH+PL LLP L AK+IY+
Sbjct: 61 E---------------------GPVRLNALPSPRIIKTHLPLHLLPKSLWDPNAKIIYLV 99
Query: 179 RNPKDVAVSYFNLYKLFRTLDFTGDFDTFWNYFQN 213
RNPKDVAVSY++ +++ + L G F F N
Sbjct: 100 RNPKDVAVSYYHFFRMAKILKAPGTPFEFVEDFLN 134
Score = 111 bits (280), Expect = 4e-28
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 42/202 (20%)
Query: 259 IIYVARNPKDVAVSYFNLYKLFRTLDFTGDFDTFWNYFQNDLVGWAPYWNHVKEGWSHRD 318
IIY+ RNPKDVAVSY++ +++ + L G F F N V Y++HVK W R
Sbjct: 95 IIYLVRNPKDVAVSYYHFFRMAKILKAPGTPFEFVEDFLNGKVNCGSYFDHVKGWWKLRP 154
Query: 319 NPNVLFLFYEDMNKNELLSCMAAIHAIHTRYATAVLRRYHMNTTVFGGILSNCGLAALRS 378
N+LFL YED+ K+ R +
Sbjct: 155 PGNILFLRYEDLKKD--------------------PRG-----------------EIKKI 177
Query: 379 FEFLSTPLTQDQIEQLAAYLDIKNFRANPSVNFDQLIRVGVCRAQSDGFIRQGKSGGWKS 438
EFL PLT+++++++ +L +N + NP +N+ +L + V F R+G G WK+
Sbjct: 178 AEFLGIPLTEEELDKIVKHLSFENMKGNPCLNYSKLPKHEV-----SPFFRKGLVGDWKN 232
Query: 439 KFSSELNMQADKWIEENLRNTD 460
F+ E + D+ +E ++ T
Sbjct: 233 YFTVEQAEKFDEIYQEKMKGTG 254
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 68.8 bits (168), Expect = 1e-12
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 23/140 (16%)
Query: 58 FPVRPDDVWVVTFPRSGTTWTQELVWLIANGLNYEEARTTPLTERFPFLEFNVFVDNVRL 117
F RP+D V ++P++GTTW + L + IAN ++++ + PL +R P EF +++
Sbjct: 75 FQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDDS-SNPLLKRNPH-EFVPYIE---- 128
Query: 118 AEFRAENSGNLEHQEIIDSIATPQYEQLRECTGRRFIKTHIPLSLLPPDLMTSGAKVIYV 177
ID P + L++ G THIP LLP ++ SG K++Y+
Sbjct: 129 ----------------IDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSGCKMVYI 171
Query: 178 ARNPKDVAVSYFNLYKLFRT 197
R+PKD +S + R+
Sbjct: 172 WRDPKDTFISMWTFLHKERS 191
Score = 41.8 bits (98), Expect = 5e-04
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 41/208 (19%)
Query: 258 EIIYVARNPKDVAVSYFNLYKLFRT-LDFTGDFDTFWNYFQNDLVGWAPYWNHVKEGW-S 315
+++Y+ R+PKD +S + R+ + ++ F L + PY +HV W +
Sbjct: 167 KMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKA 226
Query: 316 HRDNPN-VLFLFYEDMNKNELLSCMAAIHAIHTRYATAVLRRYHMNTTVFGGILSNCGLA 374
+++NP+ +LFL YE M + L ++R LA
Sbjct: 227 YQENPDRILFLKYETMRADPL----------------PYVKR----------------LA 254
Query: 375 ALRSFEFLSTPLTQDQIEQ---LAAYLDIKNFRANPSVNFDQLIRVGVCRAQSDGFIRQG 431
+ F + + +E+ L ++ +KN AN D+ R V + + R+G
Sbjct: 255 EFMGYGFTAEEEEKGVVEKVVKLCSFETLKNLEANKGEK-DREDRPAV--YANSAYFRKG 311
Query: 432 KSGGWKSKFSSELNMQADKWIEENLRNT 459
K G W++ + E+ + D +EE + T
Sbjct: 312 KVGDWQNYLTPEMAARIDGLMEEKFKGT 339
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 33.4 bits (77), Expect = 0.23
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 331 NKNELLSCMAAIHAIHTRYATAV-LRRYHMNTTVFGGILSNCGLAALRSFEFLSTPLTQD 389
E+L M + I R A + R ++ + GI + A L L ++
Sbjct: 120 GVKEVLEAMVVAYEIAIRLALSNSFRHVGLDHVTWVGIAAAAAAAKLLG-------LDRE 172
Query: 390 QIEQ 393
+IE
Sbjct: 173 EIEN 176
>gnl|CDD|224990 COG2079, PrpD, Uncharacterized protein involved in propionate
catabolism [General function prediction only].
Length = 453
Score = 32.7 bits (75), Expect = 0.45
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 333 NELLSCMAAIHAIHTRYATAV-LRRYHMNTTVFGGILSNCGLAALRSFEFLSTPLTQDQI 391
ELL+ +AA + I R A LR + G+ + +A L L +++
Sbjct: 126 RELLAAIAAGYEIQVRLALENSLRHVGHDHVTLVGVAAAAAVAKLLG-------LDREET 178
Query: 392 EQ 393
Sbjct: 179 AN 180
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 32.4 bits (74), Expect = 0.51
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 19 QNAQLRQHFKGESSHFVQVGPERYLFPSKYESDAEKIYNFPVRPDDVWVVTFPRSGTTWT 78
+++++ GE + G E + P S+AE DD +++ F
Sbjct: 503 STGEVKKYIYGEGRY----GGEPFFVPRGSGSEAE---------DDGYILAFVHDEEKGK 549
Query: 79 QELVWLIANGLNYEEARTTPLTERFPFLEFNVFVDNVRLAE 119
EL + N +N E T L R P+ F+ L +
Sbjct: 550 SEL--QVVNAVNLELEATVKLPSRVPYGFHGTFISAEDLLK 588
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport
and metabolism / Translation, ribosomal structure and
biogenesis].
Length = 152
Score = 31.1 bits (71), Expect = 0.52
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 24/92 (26%)
Query: 110 VFVDNVRLAEFRAENSGN-----LEHQEIIDS---IATPQYEQLRECTGRRFIKTHIPLS 161
V VD R N H EI+ T +L++CT T P
Sbjct: 33 VIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCT---LYVTLEPCP 89
Query: 162 LLPPDLMTSGA-------KVIYVARNPKDVAV 186
M +GA +V+Y A +PK A+
Sbjct: 90 ------MCAGAIIWARIDRVVYGASDPKTGAI 115
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 29.0 bits (65), Expect = 6.9
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 11 KVSPLDPKQNAQLRQHFKGESSHFVQVGPERYLFPSKYESDAEKIYNFPVRPDDVWVVTF 70
K D + NA+LR + E V ER F + + + D+ + T+
Sbjct: 465 KAGGDDAEINARLRDLAEREG-----VDSERLRFLPP-APNEDHRARY--GIADLVLDTY 516
Query: 71 PRSGTTWTQELVWL 84
P G T + +W+
Sbjct: 517 PYGGHTTASDALWM 530
>gnl|CDD|217856 pfam04041, DUF377, Domain of unknown function (DUF377). This
family contains many hypothetical proteins, some of
which are predicted to be glycosyl hydrolases. This
family was noted to belong to the Beta fructosidase
superfamily in.
Length = 311
Score = 28.6 bits (64), Expect = 7.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 294 NYFQNDLVGWAPYWNHVKEGW 314
F +GW KEGW
Sbjct: 197 GMFDALKIGWGTPPVETKEGW 217
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 28.3 bits (64), Expect = 9.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 146 RECTGRRFIKTHIPLSLLPPDLMTSGAKVIYVA--RNPKDV 184
R+C + P+ L P +L G KVI V+ RN D
Sbjct: 105 RKCPKPTVVCIAEPIGLYPGELYEKGLKVITVSTRRNRPDA 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.430
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,572,265
Number of extensions: 2407929
Number of successful extensions: 2005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2002
Number of HSP's successfully gapped: 17
Length of query: 465
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 365
Effective length of database: 6,502,202
Effective search space: 2373303730
Effective search space used: 2373303730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)