Query psy17268
Match_columns 293
No_of_seqs 140 out of 208
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:37:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06775 Seipin: Putative adip 100.0 3.2E-60 7E-65 421.4 19.2 195 41-242 2-199 (199)
2 KOG4200|consensus 100.0 6.6E-36 1.4E-40 280.1 -1.8 216 27-253 39-257 (398)
3 KOG4200|consensus 99.6 5.2E-16 1.1E-20 146.5 4.1 150 105-261 229-385 (398)
4 TIGR03711 acc_sec_asp3 accesso 71.1 17 0.00037 30.7 6.6 64 97-184 59-122 (135)
5 PF15432 Sec-ASP3: Accessory S 70.5 18 0.00039 30.2 6.7 39 97-141 48-86 (128)
6 PF02221 E1_DerP2_DerF2: ML do 63.4 19 0.0004 29.0 5.4 38 99-139 88-125 (134)
7 smart00737 ML Domain involved 60.0 25 0.00053 28.0 5.4 39 99-140 74-112 (118)
8 PF11812 DUF3333: Domain of un 56.7 44 0.00095 28.8 6.7 44 26-74 14-59 (155)
9 PF02468 PsbN: Photosystem II 45.9 18 0.00039 24.6 2.0 16 253-268 24-39 (43)
10 PF15202 Adipogenin: Adipogeni 45.7 48 0.001 24.9 4.4 25 233-257 15-39 (81)
11 PF07853 DUF1648: Protein of u 45.7 22 0.00047 24.4 2.5 28 45-75 3-30 (51)
12 cd00912 ML The ML (MD-2-relate 44.5 65 0.0014 26.0 5.7 39 99-140 82-121 (127)
13 COG4856 Uncharacterized protei 44.2 39 0.00085 33.3 4.9 38 97-134 62-101 (403)
14 PRK11246 hypothetical protein; 42.9 1.3E+02 0.0027 27.6 7.6 65 119-205 80-150 (218)
15 PF15168 TRIQK: Triple QxxK/R 42.8 88 0.0019 23.9 5.5 10 50-59 64-73 (79)
16 PF14992 TMCO5: TMCO5 family 41.5 58 0.0013 30.8 5.4 32 29-60 211-242 (280)
17 PRK13183 psbN photosystem II r 40.2 26 0.00057 24.1 2.1 22 247-268 18-42 (46)
18 PF06679 DUF1180: Protein of u 39.3 56 0.0012 28.4 4.7 20 253-275 116-135 (163)
19 PF05109 Herpes_BLLF1: Herpes 38.3 73 0.0016 33.0 5.8 33 99-134 172-204 (830)
20 CHL00020 psbN photosystem II p 37.7 21 0.00045 24.3 1.4 22 247-268 15-39 (43)
21 PF15176 LRR19-TM: Leucine-ric 36.2 1.1E+02 0.0023 24.7 5.4 17 227-246 15-31 (102)
22 cd00917 PG-PI_TP The phosphati 35.6 1E+02 0.0022 25.0 5.4 37 99-139 79-115 (122)
23 PF14851 FAM176: FAM176 family 34.5 1.2E+02 0.0026 26.2 5.9 21 244-264 34-54 (153)
24 PHA03171 UL37 tegument protein 33.7 50 0.0011 32.9 3.8 59 223-291 439-497 (499)
25 cd00916 Npc2_like Niemann-Pick 29.7 1.5E+02 0.0032 24.1 5.5 38 99-139 79-116 (123)
26 PF00394 Cu-oxidase: Multicopp 29.5 54 0.0012 27.6 3.0 47 98-151 111-157 (159)
27 PF10864 DUF2663: Protein of u 29.1 2.2E+02 0.0048 23.9 6.4 13 11-23 11-23 (130)
28 PF07214 DUF1418: Protein of u 27.9 1.2E+02 0.0026 24.1 4.4 18 275-292 79-96 (96)
29 PF01146 Caveolin: Caveolin; 27.6 99 0.0021 26.5 4.2 28 229-256 71-99 (148)
30 cd03451 FkbR2 FkbR2 is a Strep 27.1 3.2E+02 0.0069 21.9 7.2 53 99-151 92-145 (146)
31 TIGR02736 cbb3_Q_epsi cytochro 27.0 77 0.0017 22.8 2.8 20 42-61 6-25 (56)
32 PF12273 RCR: Chitin synthesis 25.6 48 0.001 27.2 1.9 20 30-49 2-21 (130)
33 PF14539 DUF4442: Domain of un 24.6 1.4E+02 0.0029 24.5 4.4 38 107-145 92-129 (132)
34 PF13752 DUF4165: Domain of un 24.0 1.8E+02 0.0038 24.3 4.9 35 110-148 85-119 (124)
35 COG3736 VirB8 Type IV secretor 23.6 2.2E+02 0.0047 26.4 5.9 41 9-52 24-64 (239)
36 cd01324 cbb3_Oxidase_CcoQ Cyto 23.6 1.6E+02 0.0035 20.2 3.9 17 245-261 21-37 (48)
37 COG4068 Uncharacterized protei 22.6 3E+02 0.0066 20.1 5.2 25 14-38 27-51 (64)
38 PF10144 SMP_2: Bacterial viru 21.4 85 0.0019 28.4 2.8 27 119-145 80-106 (210)
39 PF10633 NPCBM_assoc: NPCBM-as 20.9 2.1E+02 0.0046 20.8 4.5 31 98-131 45-75 (78)
No 1
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=100.00 E-value=3.2e-60 Score=421.41 Aligned_cols=195 Identities=46% Similarity=0.820 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcceEEeEEEEeccCCCCCCcccCceEEEEeccccccccCCCeEEEEEEEEecCCccCc
Q psy17268 41 SASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLMVGQPYKILMHLEMPESPTNI 120 (293)
Q Consensus 41 ~~~ll~vSv~~Y~~FY~~yiP~~~~~~Pv~lqy~~~~~~~~~~s~P~A~v~L~~~~~~L~~~q~YdVsv~L~lPeS~~N~ 120 (293)
+++++++|+++|++|||.|||++.+++||||||++|.+ |+|+++++++.+.+.+||+|||+|+|+||||++|+
T Consensus 2 ~~~ll~~s~~~y~~fy~~~vP~~~~~~pl~f~y~~~~~-------P~A~v~l~~~~~~l~~~q~Ydv~v~L~lP~S~~N~ 74 (199)
T PF06775_consen 2 LILLLWLSVILYGLFYYSYVPTVSHSRPLHFDYTSGRN-------PYANVSLSNKARLLPPGQPYDVSVELELPESPYNR 74 (199)
T ss_pred EEhHHHHHHHHHHhhheEEeccceEEEEEEEEecCCCC-------cEEEEEeccCccccCCCceEEEEEEEEeCCCCCcC
Confidence 35788999999999999999999999999999998743 99999999777889999999999999999999999
Q ss_pred cCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcceEEEEEeccc--cccccCCCCceEEE
Q psy17268 121 ELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFS--EYEEDQNHPVTDIY 198 (293)
Q Consensus 121 ~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~q~l~V~l~e--~~~e~~~~p~~~~~ 198 (293)
++|||||+++++|.+|+++++++||||++|+|+++|++++++++|+|++|+.+|+|+++|+|++ ++.++.+.|+++++
T Consensus 75 ~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~S~~i~~~~~~~~~p~~l~G~~~e~q~l~V~l~~~~~~~~~~~~~~~~~~ 154 (199)
T PF06775_consen 75 DLGMFMVSLELLSANGKVLASSSRPAMLPYRSPLIRLLRTLLFLPPYLLGWSEETQTLSVPLFERVEFREDSESPPTSAR 154 (199)
T ss_pred CCCeEEEEEEEEcCCCcEEEEEecceecccCCHHHHHHHHHHHHHHhhEecccceEEEEEEeccccccccccCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 78889999999999
Q ss_pred EEEeccc-eeEEEEEEEEEeccchhHHHHHHhhhHHHHHHHHHHH
Q psy17268 199 IEVQSRF-IHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNL 242 (293)
Q Consensus 199 vei~sr~-iqiY~A~L~~~a~l~GlR~lmy~~pi~S~~vgi~~~~ 242 (293)
|++++|. +|||+|+|+++|+|+|+||+|||||++||++|+++||
T Consensus 155 v~i~~~~~~qiy~A~L~~~a~l~glr~~my~~pi~S~~v~~~~fw 199 (199)
T PF06775_consen 155 VEIQSRAILQIYSASLRFTARLPGLRYLMYNWPILSFFVGVSLFW 199 (199)
T ss_pred EEEccCCCcEEEEEEEEEEEEChHHHHHHHhhhhhHheeeeeeeC
Confidence 9999998 9999999999999999999999999999999998776
No 2
>KOG4200|consensus
Probab=100.00 E-value=6.6e-36 Score=280.12 Aligned_cols=216 Identities=36% Similarity=0.598 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceEEeEEEEeccCCCCCCcccCceEEEEecc--ccccccCCCe
Q psy17268 27 VWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTK--RHQLLMVGQP 104 (293)
Q Consensus 27 ~r~~l~~~~~l~~~~~~ll~vSv~~Y~~FY~~yiP~~~~~~Pv~lqy~~~~~~~~~~s~P~A~v~L~~--~~~~L~~~q~ 104 (293)
+|..++..+++.+..+.++|.+++.|..||| |||+++|..| +|| +|+.. -.|+||.|++++++ ++++|+.||+
T Consensus 39 ~~~~vl~~~i~s~~~m~i~d~~v~~~~pf~y-~mptvs~~~~--~~~-s~dws-tt~sfpia~V~l~~~~~~~~L~~gpp 113 (398)
T KOG4200|consen 39 ERELVLDFGILSCKIMLIIDSGVFLYDPFYY-YMPTVSHYSP--PQY-SCDWS-TTCSFPIANVSLDKSGMDRVLMFGPP 113 (398)
T ss_pred hhhhhhhhcccccceEEEEecceeeccceee-eccccccccC--ccc-ccchh-ccccceeEEEEEeeccceeEEecCCc
Confidence 8889999999999999999999999999999 9999999999 888 77544 34999999999998 7899999999
Q ss_pred EEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcceEEEEEeccc
Q psy17268 105 YKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFS 184 (293)
Q Consensus 105 YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~q~l~V~l~e 184 (293)
|.+.++++||+||.|.++|||||+...-+.+|..+..+||.+|++|+|+++.++.+++++|+|+.|+.+|+|.+.+++++
T Consensus 114 ~lv~~~i~~p~sP~n~~~G~flVs~~~~~~d~g~l~~v~Rt~~g~~rs~~v~mL~~lv~S~L~i~G~~eekp~V~ve~l~ 193 (398)
T KOG4200|consen 114 YLVTLCIEMPESPVNQRLGMFLVSRISGDTDGGILSTVRRTVMGHYRSPLVIMLFLLVVSPLYIGGFVEEKPLVVVELLN 193 (398)
T ss_pred eeeEEEeecccCchhhHhhhhhhhhhhhhcccchhhhehheeeecccchHHHHHHHHHHhhHheeeeeeecceeeeeehh
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999984
Q ss_pred -cccccCCCCceEEEEEEeccceeEEEEEEEEEeccchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17268 185 -EYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSW 253 (293)
Q Consensus 185 -~~~e~~~~p~~~~~vei~sr~iqiY~A~L~~~a~l~GlR~lmy~~pi~S~~vgi~~~~~f~~~~~lls~ 253 (293)
+|.|++ +|.++|.||++|+++|+|.+++++++ +| +|+|||.++...++..|++|..+..+++|
T Consensus 194 fdyte~s-vPitsa~ve~~S~K~s~~t~~lrg~~----~r-l~~n~pmt~pes~ynknlgffqv~v~fls 257 (398)
T KOG4200|consen 194 FDYTENS-VPITSAGVEIHSKKISIYTSKLRGHA----LR-LLINLPMTLPESEYNKNLGFFQVRVLFLS 257 (398)
T ss_pred hhhhhcc-CcCCcceEEeecceeEEEEEEEEEEE----EE-EEEecceecchhhhhccceeEEEEeeehh
Confidence 466665 99999999999999999999999999 88 99999999999999999999888888777
No 3
>KOG4200|consensus
Probab=99.59 E-value=5.2e-16 Score=146.54 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=123.0
Q ss_pred EEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcceEEEEEeccc
Q psy17268 105 YKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQTLTLELFS 184 (293)
Q Consensus 105 YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~q~l~V~l~e 184 (293)
-++++-+++|+|.+|+|+|+|+|.+.|.+..|.++++++||||++.+|.++|+.+++++..++..|+..|-|+.+.++..
T Consensus 229 l~~n~pmt~pes~ynknlgffqv~v~fls~~G~~~a~sr~pcm~~frskpirl~~tf~~~vpl~tg~~seiqt~~~~lk~ 308 (398)
T KOG4200|consen 229 LLINLPMTLPESEYNKNLGFFQVRVLFLSVWGGTLARSRRPCMVRFRSKPIRLTQTFRKIVPLSTGIASEIQTLSLDLKA 308 (398)
T ss_pred EEEecceecchhhhhccceeEEEEeeehhccCcccccccccceeeeeccchhhhhheeeeecccccccccceeccchhhh
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cccccCCCCceEEEEEEec-----c-ceeEEEEEEEEEeccchhHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q psy17268 185 EYEEDQNHPVTDIYIEVQS-----R-FIHIYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLIFI-VFICAVSWWQLY 257 (293)
Q Consensus 185 ~~~e~~~~p~~~~~vei~s-----r-~iqiY~A~L~~~a~l~GlR~lmy~~pi~S~~vgi~~~~~f~-~~~~lls~~~~~ 257 (293)
+.|+...+ ..+..+... + .+|.|+|++..++.. +...||| .+ .++|+.+..... ....++++...+
T Consensus 309 -~~ek~~~~-~~v~~~~~~e~~p~~~ip~~yeasl~~eS~~---~~~~w~w-~t-L~vw~sm~l~~~~l~a~lv~~rp~~ 381 (398)
T KOG4200|consen 309 -VVEKDEDC-LKVEGELRAEFRPDAGIPELYEASLEPESKD---KRIIWNW-KT-LFVWASMSLPIPELTAALVCFRPLI 381 (398)
T ss_pred -hhhcCchh-hhhcceeccccCCCCCCceeccccccccCCC---cccchhh-hH-HHHHhhcccchHHHHHHHHHhcccc
Confidence 77765322 223333311 1 499999999999988 9999999 44 778987765554 444455566666
Q ss_pred CCcc
Q psy17268 258 GPKE 261 (293)
Q Consensus 258 ~~~~ 261 (293)
.|.+
T Consensus 382 ~p~t 385 (398)
T KOG4200|consen 382 IPPT 385 (398)
T ss_pred cCCC
Confidence 6644
No 4
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=71.14 E-value=17 Score=30.72 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=44.2
Q ss_pred ccccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcceE
Q psy17268 97 QLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEKQ 176 (293)
Q Consensus 97 ~~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~q 176 (293)
++|..|+.|.+.++++...+ |-..+++.++|..|+.+.+. +++-.+. .+-..+|+.
T Consensus 59 PlLk~g~~Y~i~~n~~~~P~------~s~~~ki~F~dr~~~ei~~~----i~~~~~~--------------~F~yP~~ay 114 (135)
T TIGR03711 59 PLLKRGQTYKLSLNADASPE------GSVYLKITFFDRQGEEIGTE----IEKDDSI--------------IFIYPDEAY 114 (135)
T ss_pred cEEcCCCEEEEEEeeeeCCC------ceEEEEEEEeccCCceeceE----EEecCce--------------EEECCCcce
Confidence 46888999999999996333 66789999999999877442 2222221 133456777
Q ss_pred EEEEeccc
Q psy17268 177 TLTLELFS 184 (293)
Q Consensus 177 ~l~V~l~e 184 (293)
.-+|+|..
T Consensus 115 sY~i~Lin 122 (135)
T TIGR03711 115 FYKISLIS 122 (135)
T ss_pred EEEEEeee
Confidence 77777764
No 5
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=70.50 E-value=18 Score=30.19 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=32.3
Q ss_pred ccccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEE
Q psy17268 97 QLLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISH 141 (293)
Q Consensus 97 ~~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~ 141 (293)
++|..|+.|.+.++.+.-.. +-.++.+.+++..|+.+..
T Consensus 48 PlLk~G~~Y~l~~~~~~~P~------~svylki~F~dr~~e~i~~ 86 (128)
T PF15432_consen 48 PLLKRGHTYQLKFNIDVVPE------NSVYLKIIFFDRQGEEIEE 86 (128)
T ss_pred CEecCCCEEEEEEEEEEccC------CeEEEEEEEEccCCCEeeE
Confidence 46889999999999997432 5669999999999988754
No 6
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=63.43 E-value=19 Score=29.01 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=33.2
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLI 139 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l 139 (293)
+.+|+.|..++++.+|..... |.+.+.+++.+.+|+.+
T Consensus 88 i~~G~~~~~~~~~~i~~~~p~---~~~~i~~~l~d~~~~~i 125 (134)
T PF02221_consen 88 IKAGEYYTYTYTIPIPKIYPP---GKYTIQWKLTDQDGEEI 125 (134)
T ss_dssp BTTTEEEEEEEEEEESTTSSS---EEEEEEEEEEETTTEEE
T ss_pred cCCCcEEEEEEEEEcccceee---EEEEEEEEEEeCCCCEE
Confidence 678999999999999987666 89999999999997765
No 7
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=59.98 E-value=25 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=31.9
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLIS 140 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~ 140 (293)
+.+|+.|.....+.+|..-.. |.+.+.+++.+.+|+.++
T Consensus 74 l~~G~~~~~~~~~~v~~~~P~---~~~~v~~~l~d~~~~~i~ 112 (118)
T smart00737 74 IEKGETVNYTNSLTVPGIFPP---GKYTVKWELTDEDGEELA 112 (118)
T ss_pred CCCCeeEEEEEeeEccccCCC---eEEEEEEEEEcCCCCEEE
Confidence 567999988888899875444 999999999998887653
No 8
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=56.65 E-value=44 Score=28.79 Aligned_cols=44 Identities=25% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCcceEEeEEEEec
Q psy17268 26 NVWEKIFHSSMLVLLSASVLWISIFL--YIAFYYTYIPNISHVRPVHLKFN 74 (293)
Q Consensus 26 ~~r~~l~~~~~l~~~~~~ll~vSv~~--Y~~FY~~yiP~~~~~~Pv~lqy~ 74 (293)
+-|-.-+-.+++.+.++++|..|++. |.+|.+++| +.||+|+-.
T Consensus 14 rFr~~g~~Ai~~~l~fL~~ll~sI~~~G~~AF~qt~I-----~l~V~~d~~ 59 (155)
T PF11812_consen 14 RFRAYGLAAIAIALAFLVILLFSIVSKGYPAFTQTYI-----TLEVTFDPE 59 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHheeEE-----EEEEEeCHH
Confidence 33333344444555666666677774 888999988 888887554
No 9
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=45.87 E-value=18 Score=24.60 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=11.4
Q ss_pred HHhhcCCcccchhhhh
Q psy17268 253 WWQLYGPKEDLRSLFF 268 (293)
Q Consensus 253 ~~~~~~~~~~~r~~~~ 268 (293)
|..++.|.+++||+|.
T Consensus 24 YtaFGppSk~LrDPfe 39 (43)
T PF02468_consen 24 YTAFGPPSKELRDPFE 39 (43)
T ss_pred hheeCCCccccCCccc
Confidence 4446678899998854
No 10
>PF15202 Adipogenin: Adipogenin
Probab=45.69 E-value=48 Score=24.85 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17268 233 SAVLGISSNLIFIVFICAVSWWQLY 257 (293)
Q Consensus 233 S~~vgi~~~~~f~~~~~lls~~~~~ 257 (293)
||+|+.++-=.-+.++.++.|+++.
T Consensus 15 sflvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 15 SFLVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544433322223455556788743
No 11
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=45.67 E-value=22 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEeEEEEecc
Q psy17268 45 LWISIFLYIAFYYTYIPNISHVRPVHLKFNA 75 (293)
Q Consensus 45 l~vSv~~Y~~FY~~yiP~~~~~~Pv~lqy~~ 75 (293)
+.+..+++....|..+|+. .|+|++.+.
T Consensus 3 i~~~~~i~~~~~y~~LP~~---ip~H~~~~G 30 (51)
T PF07853_consen 3 IIVLPLIITLIFYPQLPDQ---IPTHFNANG 30 (51)
T ss_pred HHHHHHHHHHHHHHHCChh---hceeeCCCC
Confidence 4456666777888999974 799988764
No 12
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=44.54 E-value=65 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=30.1
Q ss_pred ccCCCeEEEEEEEEecC-CccCccCcceeEEEEEecCCCCeEE
Q psy17268 99 LMVGQPYKILMHLEMPE-SPTNIELGMFMVCAQLKDKTGDLIS 140 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPe-S~~N~~lG~FmV~l~l~s~~g~~l~ 140 (293)
+.+||.|.....+.+|+ +-.. +...+..++.+.+|+.++
T Consensus 82 l~~G~~~~~~~~~~v~~~~~P~---~~~~v~~~l~~~~~~~v~ 121 (127)
T cd00912 82 LRKGQQYSYAKTVNVPEFTIPT---IEYQVVLEDVTDKGEVLA 121 (127)
T ss_pred cCCCCEEEEEEEEecCcccCCC---eeEEEEEEEEcCCCCEEE
Confidence 57899999999999998 3333 567888888888777653
No 13
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.19 E-value=39 Score=33.30 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred ccccCCCeEEEEEEEEecCCcc--CccCcceeEEEEEecC
Q psy17268 97 QLLMVGQPYKILMHLEMPESPT--NIELGMFMVCAQLKDK 134 (293)
Q Consensus 97 ~~L~~~q~YdVsv~L~lPeS~~--N~~lG~FmV~l~l~s~ 134 (293)
..+.+||++.|+|.|+=|.+-. -+.--.|.|.++|..+
T Consensus 62 ~y~isg~~etV~Vtl~G~ns~~~~~~~~~dFkV~ADLt~a 101 (403)
T COG4856 62 KYFISGQPETVTVTLKGPNSIVLKSEKPEDFKVVADLTHA 101 (403)
T ss_pred cccccCCceEEEEEEeCCcceeeeeecCcCeEEEEEhhhc
Confidence 4567788888888888776321 1111227777777554
No 14
>PRK11246 hypothetical protein; Provisional
Probab=42.88 E-value=1.3e+02 Score=27.57 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=41.9
Q ss_pred CccCcceeEEEEEecCCCCeEEEeeceeeeecCChHHHHHHHHHHhhHHhhcCCcce------EEEEEeccccccccCCC
Q psy17268 119 NIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKTLVQAPFLILGGYEEK------QTLTLELFSEYEEDQNH 192 (293)
Q Consensus 119 N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S~lvr~~~~~~~~P~~l~G~~~E~------q~l~V~l~e~~~e~~~~ 192 (293)
|.....+-.++.+|+.+|..+++|.-+.-++-+ +|...+. |-+..|.+ +.+.
T Consensus 80 ~La~d~~VlDAsIY~~~G~llA~S~~~~~~re~-----------------L~Ld~~~~~s~~~qQiVEPI~-----~~~~ 137 (218)
T PRK11246 80 QLTDESRILDASVYDEQGDLIARSGESVNVRDR-----------------LALDGKKAGSYFNQQIVEPIA-----GKNG 137 (218)
T ss_pred HHhcCCceeeEEEECCCCCEEEecCCCccHHHH-----------------hCCCCccccccCCCceEEEec-----CCCC
Confidence 456677889999999999999998766332221 3333222 33333333 2346
Q ss_pred CceEEEEEEeccc
Q psy17268 193 PVTDIYIEVQSRF 205 (293)
Q Consensus 193 p~~~~~vei~sr~ 205 (293)
|..-++|+++.+.
T Consensus 138 ~lGFlRvTldt~~ 150 (218)
T PRK11246 138 PLGFLRLTLDTHT 150 (218)
T ss_pred ceeEEEEEeeccc
Confidence 8889999998753
No 15
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=42.79 E-value=88 Score=23.89 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.2
Q ss_pred HHHHHHHHhh
Q psy17268 50 FLYIAFYYTY 59 (293)
Q Consensus 50 ~~Y~~FY~~y 59 (293)
..|+.||+.+
T Consensus 64 a~Ya~fyl~l 73 (79)
T PF15168_consen 64 AFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHhh
Confidence 4588888765
No 16
>PF14992 TMCO5: TMCO5 family
Probab=41.54 E-value=58 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.513 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17268 29 EKIFHSSMLVLLSASVLWISIFLYIAFYYTYI 60 (293)
Q Consensus 29 ~~l~~~~~l~~~~~~ll~vSv~~Y~~FY~~yi 60 (293)
+++.+.++-++.+++|+++..+.|++||-.||
T Consensus 211 ~~~wkr~lr~l~f~vL~f~~LL~y~~f~~~fI 242 (280)
T PF14992_consen 211 PTFWKRALRLLFFMVLFFTRLLGYLLFYIQFI 242 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666667788889999999999998887
No 17
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.20 E-value=26 Score=24.14 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=14.3
Q ss_pred HHHHHHHHh---hcCCcccchhhhh
Q psy17268 247 FICAVSWWQ---LYGPKEDLRSLFF 268 (293)
Q Consensus 247 ~~~lls~~~---~~~~~~~~r~~~~ 268 (293)
++.+..|.. ++.|.+++||.|.
T Consensus 18 L~~~TgyaiYtaFGppSk~LrDPFe 42 (46)
T PRK13183 18 LLALTGFGIYTAFGPPSKELDDPFD 42 (46)
T ss_pred HHHHhhheeeeccCCcccccCCchh
Confidence 444444444 5678899999864
No 18
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=39.35 E-value=56 Score=28.45 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=9.9
Q ss_pred HHhhcCCcccchhhhhccccccc
Q psy17268 253 WWQLYGPKEDLRSLFFYGRLRSL 275 (293)
Q Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~ 275 (293)
.+...++....| .||=++..
T Consensus 116 ~~R~r~~~rktR---kYgvl~~~ 135 (163)
T PF06679_consen 116 TFRLRRRNRKTR---KYGVLTTR 135 (163)
T ss_pred HHhhccccccce---eecccCCC
Confidence 333444333334 57766655
No 19
>PF05109 Herpes_BLLF1: Herpes virus major outer envelope glycoprotein (BLLF1); InterPro: IPR007796 This family consists of the viral late glycoprotein BLLF1, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The binding of the viral major glycoprotein BLLF1 to the CD21 cellular receptor is thought to play an essential role during infection of B lymphocytes by the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) []. ; GO: 0019058 viral infectious cycle, 0019031 viral envelope; PDB: 2H6O_A.
Probab=38.30 E-value=73 Score=32.99 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecC
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDK 134 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~ 134 (293)
...+|..|++|.|.||.++.. .+|++++|+.+.
T Consensus 172 vVraQgmD~tvpislpt~p~~---s~Fs~~~Em~gn 204 (830)
T PF05109_consen 172 VVRAQGMDWTVPISLPTSPQD---SNFSVKMEMLGN 204 (830)
T ss_dssp EESSS-EEEEEEEE-SS-SSS-----BEEE--B--T
T ss_pred EEEecceeeEEeccCcCCccc---ccceEEeecccC
Confidence 355899999999999999776 899999999765
No 20
>CHL00020 psbN photosystem II protein N
Probab=37.75 E-value=21 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=14.1
Q ss_pred HHHHHHHHh---hcCCcccchhhhh
Q psy17268 247 FICAVSWWQ---LYGPKEDLRSLFF 268 (293)
Q Consensus 247 ~~~lls~~~---~~~~~~~~r~~~~ 268 (293)
++++..|.. ++.|.+++||.|.
T Consensus 15 l~~~Tgy~iYtaFGppSk~LrDPfe 39 (43)
T CHL00020 15 LVSFTGYALYTAFGQPSKQLRDPFE 39 (43)
T ss_pred HHHhhheeeeeccCCchhccCCchh
Confidence 444444444 5678899999864
No 21
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=36.22 E-value=1.1e+02 Score=24.67 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=8.5
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q psy17268 227 FTWPLLSAVLGISSNLIFIV 246 (293)
Q Consensus 227 y~~pi~S~~vgi~~~~~f~~ 246 (293)
..||++ ||+......++
T Consensus 15 ~sW~~L---VGVv~~al~~S 31 (102)
T PF15176_consen 15 RSWPFL---VGVVVTALVTS 31 (102)
T ss_pred cccHhH---HHHHHHHHHHH
Confidence 457765 55444433333
No 22
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=35.56 E-value=1e+02 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=29.1
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLI 139 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l 139 (293)
+.+|+.+ ++..+++|..-.+ |.+.|.+++.+.+++.+
T Consensus 79 i~~G~~~-~~~~~~ip~~~P~---g~y~v~~~l~d~~~~~i 115 (122)
T cd00917 79 IEPGDKF-LTKLVDLPGEIPP---GKYTVSARAYTKDDEEI 115 (122)
T ss_pred cCCCcEE-EEEEeeCCCCCCC---ceEEEEEEEECCCCCEE
Confidence 4668777 7778999954444 99999999999888765
No 23
>PF14851 FAM176: FAM176 family
Probab=34.52 E-value=1.2e+02 Score=26.16 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhcCCcccch
Q psy17268 244 FIVFICAVSWWQLYGPKEDLR 264 (293)
Q Consensus 244 f~~~~~lls~~~~~~~~~~~r 264 (293)
.+..+|+++-..--.|..+.|
T Consensus 34 LlLtLcllV~risc~~r~~~r 54 (153)
T PF14851_consen 34 LLLTLCLLVIRISCRPRKRCR 54 (153)
T ss_pred HHHHHHHHHhhheeecccccc
Confidence 344555554333223444443
No 24
>PHA03171 UL37 tegument protein; Provisional
Probab=33.72 E-value=50 Score=32.85 Aligned_cols=59 Identities=24% Similarity=0.477 Sum_probs=38.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhccccccccccccccceeccCCCC
Q psy17268 223 RYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFYKEDDDN 291 (293)
Q Consensus 223 R~lmy~~pi~S~~vgi~~~~~f~~~~~lls~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
++.+-+|.++|.+..++..+..++++|.++..+ +.++-.-|-| .+ .||.+.+.|.|-++
T Consensus 439 sraLGhwaLlsifsVaaGsiaLLsLFCilli~~----RRdLleDfRy---~~---~d~~~~~~~~~v~~ 497 (499)
T PHA03171 439 SRALGHWALISICSAAAGSIAILSLFCILLFGL----RRDLIEDFRY---IC---QDDDHFFIDNDVDN 497 (499)
T ss_pred hhhccchHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHH---Hh---hcCCCccccccccc
Confidence 466677888888776666777888888888555 3333222223 23 45788888877654
No 25
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.69 E-value=1.5e+02 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.7
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLI 139 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l 139 (293)
|.+|+.|.-..++.++....+ +...|..+|.+.+|+.+
T Consensus 79 l~~G~~~~y~~~~~v~~~~P~---i~~~v~~~L~d~~~~~~ 116 (123)
T cd00916 79 LSAGEDVTYTLSLPVLAPYPG---ISVTVEWELTDDDGQVL 116 (123)
T ss_pred CcCCcEEEEEEeeeccccCCC---eEEEEEEEEEcCCCCEE
Confidence 577999999998888665555 55789999999877755
No 26
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=29.47 E-value=54 Score=27.56 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.8
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecC
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYR 151 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~ 151 (293)
.|.+||.|||-|+..= .-|+|.+..+........-....-.++|+|.
T Consensus 111 ~l~~G~R~dvlv~~~~-------~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 111 VLAPGQRYDVLVTADQ-------PPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp EE-TTEEEEEEEEECS-------CSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred EeeCCeEEEEEEEeCC-------CCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 4689999999998832 2599999987332221111122334566664
No 27
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=29.10 E-value=2.2e+02 Score=23.90 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHH
Q psy17268 11 RRTELLKQRSIKE 23 (293)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (293)
.|||++++++.+-
T Consensus 11 ~K~e~l~k~~~~~ 23 (130)
T PF10864_consen 11 EKWERLKKQHLFW 23 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 4688888887653
No 28
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=27.88 E-value=1.2e+02 Score=24.12 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=11.7
Q ss_pred ccccccccceeccCCCCC
Q psy17268 275 LATSDEESFFYKEDDDNG 292 (293)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ 292 (293)
.++.++.+..+|++|+||
T Consensus 79 ~~~~~~~s~~~k~~d~~h 96 (96)
T PF07214_consen 79 PPKSSSRSDREKKNDANH 96 (96)
T ss_pred CCCccccchhhhcccCCC
Confidence 333445577778888886
No 29
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=27.65 E-value=99 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-h
Q psy17268 229 WPLLSAVLGISSNLIFIVFICAVSWWQ-L 256 (293)
Q Consensus 229 ~pi~S~~vgi~~~~~f~~~~~lls~~~-~ 256 (293)
|+++|+++|+-..+.+-.++.++++.+ |
T Consensus 71 Yr~Ls~ilaiP~A~~~Gi~FA~lsf~hIW 99 (148)
T PF01146_consen 71 YRILSLILAIPLAFLWGILFACLSFLHIW 99 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 30
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=27.08 E-value=3.2e+02 Score=21.93 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.1
Q ss_pred ccCCCeEEEEEEEE-ecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecC
Q psy17268 99 LMVGQPYKILMHLE-MPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYR 151 (293)
Q Consensus 99 L~~~q~YdVsv~L~-lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~ 151 (293)
..+|+...+..++. .-++....+.|.-.+..++.+.+|+++.+....++++.+
T Consensus 92 v~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 92 VFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVPKR 145 (146)
T ss_pred CCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEEcC
Confidence 45677777777654 333333345677778888888999999999888888765
No 31
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=26.98 E-value=77 Score=22.76 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy17268 42 ASVLWISIFLYIAFYYTYIP 61 (293)
Q Consensus 42 ~~ll~vSv~~Y~~FY~~yiP 61 (293)
.+.+.+.+++|+-+|..|=-
T Consensus 6 ~~ti~lvv~LYgY~yhLYrs 25 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRS 25 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44556788999999988863
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.57 E-value=48 Score=27.20 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17268 30 KIFHSSMLVLLSASVLWISI 49 (293)
Q Consensus 30 ~l~~~~~l~~~~~~ll~vSv 49 (293)
|++-+++++++++++++++.
T Consensus 2 W~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 33
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=24.58 E-value=1.4e+02 Score=24.45 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred EEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeece
Q psy17268 107 ILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRS 145 (293)
Q Consensus 107 Vsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp 145 (293)
|..+.++++.+. .+-+.+.+.++++|.+|+.++....-
T Consensus 92 v~a~~~~~~e~~-~~~~~~~~~v~i~D~~G~~Va~~~~t 129 (132)
T PF14539_consen 92 VTATAELTEEQI-GERGELTVPVEITDADGEVVAEATIT 129 (132)
T ss_dssp EEEEEE-TCCHC-CHEEEEEEEEEEEETTC-EEEEEEEE
T ss_pred EEEEEEcCHHHh-CCCcEEEEEEEEEECCCCEEEEEEEE
Confidence 333344444323 33588899999999999998877543
No 34
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=23.96 E-value=1.8e+02 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=27.9
Q ss_pred EEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeee
Q psy17268 110 HLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAML 148 (293)
Q Consensus 110 ~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml 148 (293)
+|++|- .--|.|.+..++++.+|.++.+.+.|.++
T Consensus 85 ~ltlp~----l~dG~ytvk~eiL~s~g~vV~t~s~~~~I 119 (124)
T PF13752_consen 85 ELTLPA----LGDGTYTVKSEILDSQGTVVQTYSYPFTI 119 (124)
T ss_pred EEEecc----CCCCcEEEEEEeeccCCCEEEeeeEeEEE
Confidence 345554 24499999999999999999999888654
No 35
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=23.62 E-value=2.2e+02 Score=26.38 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17268 9 INRRTELLKQRSIKELQNVWEKIFHSSMLVLLSASVLWISIFLY 52 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ll~vSv~~Y 52 (293)
..++|+.-| .....+.|+++...+.++.++.+++++++.+-
T Consensus 24 ~a~~~~~~r---~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~l 64 (239)
T COG3736 24 EARNWEEDR---VIKLERSRRLAWRVAILFTLLAVAAVIAIAIL 64 (239)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888 33445556777788888777777777776643
No 36
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.60 E-value=1.6e+02 Score=20.23 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcCCcc
Q psy17268 245 IVFICAVSWWQLYGPKE 261 (293)
Q Consensus 245 ~~~~~lls~~~~~~~~~ 261 (293)
..+++++.|.-+-+.+.
T Consensus 21 ~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 21 LFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHhCCCcch
Confidence 55666666665544443
No 37
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=22.64 E-value=3e+02 Score=20.07 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17268 14 ELLKQRSIKELQNVWEKIFHSSMLV 38 (293)
Q Consensus 14 ~~~~~~~~~~~~~~r~~l~~~~~l~ 38 (293)
|+-++..+|..++-|+..+...+++
T Consensus 27 e~C~eil~ker~R~r~~~~~~~li~ 51 (64)
T COG4068 27 EECGEILNKERKRQRNFMILMFLIL 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776555444333
No 38
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=21.39 E-value=85 Score=28.35 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.7
Q ss_pred CccCcceeEEEEEecCCCCeEEEeece
Q psy17268 119 NIELGMFMVCAQLKDKTGDLISHSCRS 145 (293)
Q Consensus 119 N~~lG~FmV~l~l~s~~g~~l~~s~Rp 145 (293)
|..-..|-.++++||.+|..++.|...
T Consensus 80 ~L~~d~~VldAsIYd~~G~lLA~S~~~ 106 (210)
T PF10144_consen 80 QLAKDPFVLDASIYDADGVLLAQSGES 106 (210)
T ss_pred HHhcCCeEeEEEEECCCCCEEEEcCCC
Confidence 455577889999999999999998764
No 39
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.89 E-value=2.1e+02 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=22.9
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEE
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQL 131 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l 131 (293)
.|.+|+.-.+++.++.|+.-.. |.+.|.++.
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~---G~y~v~~~a 75 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAP---GTYTVTVTA 75 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--S---EEEEEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCC---ceEEEEEEE
Confidence 5899999999999999887554 989888765
Done!