Query psy17268
Match_columns 293
No_of_seqs 140 out of 208
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:37:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h6o_A Major outer envelope gl 58.9 18 0.00062 33.7 6.4 33 99-134 173-205 (470)
2 1nep_A EPV20, BNPC2, epididyma 38.2 72 0.0025 24.9 6.2 39 99-140 82-120 (130)
3 1xwv_A DER F II; beta sheets, 25.6 1.2E+02 0.0041 23.6 5.5 35 99-136 80-115 (129)
4 3rqb_A Uncharacterized protein 20.8 91 0.0031 27.4 4.3 32 120-151 239-270 (275)
5 1c8u_A Acyl-COA thioesterase I 17.3 1.3E+02 0.0044 26.4 4.5 31 121-151 254-284 (285)
6 3u0a_A Acyl-COA thioesterase I 15.9 1.5E+02 0.0051 26.2 4.6 30 122-151 248-277 (285)
7 2knc_B Integrin beta-3; transm 13.5 1.9E+02 0.0065 20.9 3.7 25 232-256 11-35 (79)
8 3hd7_B Syntaxin-1A; membrane p 13.4 3.4E+02 0.012 20.4 5.4 10 25-34 80-89 (109)
9 1dyo_A Endo-1,4-beta-xylanase 13.2 2.9E+02 0.01 21.9 5.3 38 98-138 64-101 (160)
10 3bbj_A Putative thioesterase I 11.5 1.9E+02 0.0064 25.1 3.8 30 120-149 242-271 (272)
No 1
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Probab=58.95 E-value=18 Score=33.74 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecC
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDK 134 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~ 134 (293)
...+|..|++|.+.||.++.- .+|++++|+.+.
T Consensus 173 vVraQgmD~tvpislpt~p~~---s~Fsi~~Em~gn 205 (470)
T 2h6o_A 173 VVRAQGLDVTLPLSLPTSAQD---SNFSVKTEMLGN 205 (470)
T ss_dssp EESSSCEEEEEEEECSSCSSS---CCBEEECCBCCT
T ss_pred EEEecceeEEEecccCCCccc---CceEEEEeeccC
Confidence 345899999999999999876 899999999765
No 2
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=38.17 E-value=72 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=31.2
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLIS 140 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~ 140 (293)
|.+||.|.-+.+|.++..... +...+..+|.|.+|+.+.
T Consensus 82 l~~G~~~~y~~~lpV~~~~P~---~~~~v~~~L~d~~~~~l~ 120 (130)
T 1nep_A 82 IEKDKTYNYVNKLPVKNEYPS---IKVVVEWELTDDKNQRFF 120 (130)
T ss_dssp BCTTCEEEEEEEEECCTTSCS---SEEEEEEEEECTTSCEEE
T ss_pred ccCCcEEEEEEEeEecccCCC---ccEEEEEEEEcCCCCEEE
Confidence 577999999988887776665 668899999998887653
No 3
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=25.58 E-value=1.2e+02 Score=23.57 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=29.5
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcc-eeEEEEEecCCC
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGM-FMVCAQLKDKTG 136 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~-FmV~l~l~s~~g 136 (293)
|.+||.|.-+.++.++..... +. ..+..+|.+.+|
T Consensus 80 l~~G~~~~y~~~~~v~~~~P~---v~~~~v~~~L~d~~~ 115 (129)
T 1xwv_A 80 LVKGQQYDAKYTWNVPKIAPK---SENVVVTVKLVGDNG 115 (129)
T ss_dssp BCTTCEEEEEEEEECCTTSCC---BSCEEEEEEEEETTE
T ss_pred ccCCEEEEEEEEeEecccCCC---CceEEEEEEEEcCCC
Confidence 677999999999999887665 44 899999998877
No 4
>3rqb_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MSE; 2.80A {Alicyclobacillus acidocaldarius subsp}
Probab=20.77 E-value=91 Score=27.37 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=28.0
Q ss_pred ccCcceeEEEEEecCCCCeEEEeeceeeeecC
Q psy17268 120 IELGMFMVCAQLKDKTGDLISHSCRSAMLHYR 151 (293)
Q Consensus 120 ~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~ 151 (293)
..-|.+....++.|.+|+.++++++-++++-.
T Consensus 239 ~~~Gr~~~~~~l~d~~G~LvA~s~Q~~~vr~p 270 (275)
T 3rqb_A 239 FSHGYFDQIGEVWSQDGDLLATTTQLVYMKAP 270 (275)
T ss_dssp EETTEEEEEEEEECTTSCEEEEEEEEEEECCC
T ss_pred hcCCceeeeEEEECCCCCEEEEEEEEEEEeCC
Confidence 34599999999999999999999999998743
No 5
>1c8u_A Acyl-COA thioesterase II; internal repeats, hydrolase; HET: LDA; 1.90A {Escherichia coli} SCOP: d.38.1.3 d.38.1.3
Probab=17.28 E-value=1.3e+02 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=27.2
Q ss_pred cCcceeEEEEEecCCCCeEEEeeceeeeecC
Q psy17268 121 ELGMFMVCAQLKDKTGDLISHSCRSAMLHYR 151 (293)
Q Consensus 121 ~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~ 151 (293)
.-|......+++|.+|+.++++.+-++++.+
T Consensus 254 ~~Grg~~~g~i~d~~G~LVAs~~Qeglvr~~ 284 (285)
T 1c8u_A 254 SSARGFVRGEFYTQDGVLVASTVQEGVMRNH 284 (285)
T ss_dssp ETTEEEEEEEEEETTCCEEEEEEEEEEEEEC
T ss_pred cCceEEEEEEEECCCCCEEEEEEEeEEEEcC
Confidence 3488889999999999999999999998764
No 6
>3u0a_A Acyl-COA thioesterase II TESB2; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, hydrolase; 2.50A {Mycobacterium marinum}
Probab=15.95 E-value=1.5e+02 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=27.5
Q ss_pred CcceeEEEEEecCCCCeEEEeeceeeeecC
Q psy17268 122 LGMFMVCAQLKDKTGDLISHSCRSAMLHYR 151 (293)
Q Consensus 122 lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~ 151 (293)
-|...+..+++|.+|+.++++.+-++++.+
T Consensus 248 ~Grgl~~g~i~~~~G~LVAs~~QeglvR~~ 277 (285)
T 3u0a_A 248 GGRALTHGKIFTQGGELVAAVMQEGLTRYP 277 (285)
T ss_dssp TTEEEEEEEEEETTCCEEEEEEEEEEEECC
T ss_pred CCeEEEEEEEECCCCCEEEEEEeeEEEEec
Confidence 488899999999999999999999999876
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.54 E-value=1.9e+02 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17268 232 LSAVLGISSNLIFIVFICAVSWWQL 256 (293)
Q Consensus 232 ~S~~vgi~~~~~f~~~~~lls~~~~ 256 (293)
...+.|+......+.+++++.|..+
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777764
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=13.38 E-value=3.4e+02 Score=20.43 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy17268 25 QNVWEKIFHS 34 (293)
Q Consensus 25 ~~~r~~l~~~ 34 (293)
.++|++...+
T Consensus 80 k~~rkk~~i~ 89 (109)
T 3hd7_B 80 SKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HhccCcceeh
Confidence 3444444333
No 9
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=13.16 E-value=2.9e+02 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=28.1
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCe
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDL 138 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~ 138 (293)
.|.+|+.|.++.-+.+-+... -..|.+.+...+.+|..
T Consensus 64 ~l~~g~~Y~~Sa~V~~~~g~~---~~~v~~~l~~~~~~g~~ 101 (160)
T 1dyo_A 64 TFVPGNTYCFSVVASFIEGAS---STTFCMKLQYVDGSGTQ 101 (160)
T ss_dssp TSCTTCEEEEEEEEECCSSSS---CEEEEEEEEEECTTSCE
T ss_pred hccCCCEEEEEEEEEECCCCC---ceeEEEEEEEEcCCCCE
Confidence 478999999999999866432 23577777766777764
No 10
>3bbj_A Putative thioesterase II; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.16A {Thermobifida fusca}
Probab=11.51 E-value=1.9e+02 Score=25.11 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.6
Q ss_pred ccCcceeEEEEEecCCCCeEEEeeceeeee
Q psy17268 120 IELGMFMVCAQLKDKTGDLISHSCRSAMLH 149 (293)
Q Consensus 120 ~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~ 149 (293)
..-|......+++|.+|..++++++-++++
T Consensus 242 a~~Grg~~~~~i~d~~G~LvA~~~Qe~lvr 271 (272)
T 3bbj_A 242 VSDGWFDENVDLWDARGRLVAQSRQLARVG 271 (272)
T ss_dssp EETTEEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ecCCcEeeeEEEECCCCCEEEEEeeeeecc
Confidence 344888899999999999999999988764
Done!