Query psy17268
Match_columns 293
No_of_seqs 140 out of 208
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 17:37:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17268.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17268hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nepa_ b.1.18.7 (A:) Epididym 65.2 6.6 0.00048 29.1 6.2 39 99-140 82-120 (130)
2 d2vzsa3 b.1.4.1 (A:675-777) Ex 34.7 69 0.005 22.4 7.8 19 123-141 70-88 (103)
3 d1w8oa1 b.1.18.2 (A:403-505) S 33.8 38 0.0028 23.8 5.6 37 98-137 54-90 (103)
4 d1gyca2 b.6.1.3 (A:131-300) La 32.4 22 0.0016 27.6 4.3 47 98-152 107-153 (170)
5 d1aoza2 b.6.1.3 (A:130-338) As 28.8 28 0.0021 27.1 4.5 46 98-152 126-171 (209)
6 d1c8ua2 d.38.1.3 (A:116-286) T 27.4 29 0.0021 26.1 4.2 30 123-152 142-171 (171)
7 d1v10a2 b.6.1.3 (A:137-304) La 26.7 29 0.0021 26.7 4.1 47 98-152 106-152 (168)
8 d2q9oa2 b.6.1.3 (A:163-343) La 24.0 35 0.0026 26.5 4.2 49 98-153 104-153 (181)
9 d1xwva_ b.1.18.7 (A:) Major mi 22.7 58 0.0042 23.7 5.0 38 99-139 80-118 (129)
10 d2bi0a1 d.38.1.4 (A:8-185) Hyp 19.7 1.6E+02 0.012 22.0 7.4 54 99-152 96-153 (178)
No 1
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
Probab=65.20 E-value=6.6 Score=29.13 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=33.8
Q ss_pred ccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLIS 140 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~ 140 (293)
|..|+.|+.+.++.+|..... |...+..+|.+.+|+.+.
T Consensus 82 l~~G~~~~y~~~~~I~~~~P~---~~~~v~~~l~d~~~~~i~ 120 (130)
T d1nepa_ 82 IEKDKTYNYVNKLPVKNEYPS---IKVVVEWELTDDKNQRFF 120 (130)
T ss_dssp BCTTCEEEEEEEEECCTTSCS---SEEEEEEEEECTTSCEEE
T ss_pred ccCCceEEEEEEEEcchhhcc---EEEEEEEEEEcCCCCEEE
Confidence 678999999999999887665 899999999999887653
No 2
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=34.67 E-value=69 Score=22.40 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=17.0
Q ss_pred cceeEEEEEecCCCCeEEE
Q psy17268 123 GMFMVCAQLKDKTGDLISH 141 (293)
Q Consensus 123 G~FmV~l~l~s~~g~~l~~ 141 (293)
+.+.+++.|.+++|+++.+
T Consensus 70 ~v~FlrL~L~d~~g~vlSr 88 (103)
T d2vzsa3 70 TTYLAKNVLTDSSGKEVSR 88 (103)
T ss_dssp SEEEEEEEEECTTCCEEEE
T ss_pred ceEEEEEEEECCCCCEEEe
Confidence 8999999999999998854
No 3
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=33.83 E-value=38 Score=23.81 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=31.9
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCC
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGD 137 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~ 137 (293)
-|.||+.-.+.+.++.|.+ ...|.+.+.+...+.++.
T Consensus 54 ~L~pG~s~~~~~~Vt~p~~---a~~G~Y~i~~~a~~~~~~ 90 (103)
T d1w8oa1 54 PLMPGRQAKGQVTITVPAG---TTPGRYRVGATLRTSAGN 90 (103)
T ss_dssp CBCTTCEEEEEEEEECCTT---CCCEEEEEEEEEEETTEE
T ss_pred eeCCCCcEEEEEEEECCCC---CCCceEEEEEEEEeCCcc
Confidence 4899999999999999885 566999999999876664
No 4
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}
Probab=32.39 E-value=22 Score=27.56 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=29.2
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCC
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRS 152 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S 152 (293)
.+.+||.|||-|+. |.+.|+|-+.++-..... .......-++|+|+.
T Consensus 107 ~i~~gqRydvlv~~-------~~~~~~y~ira~~~~~~~-~~~~~~~~aiL~Y~~ 153 (170)
T d1gyca2 107 QIFAAQRYSFVLNA-------NQTVGNYWIRANPNFGTV-GFAGGINSAILRYQG 153 (170)
T ss_dssp EECTTCEEEEEEEC-------CSCSSEEEEEEEESSSSC-SCGGGTTEEEEEETT
T ss_pred EecCCeEEEEEEeC-------CCCCCcEEEEEecccccc-ccCCCeeEEEEEECC
Confidence 36899999999864 455689999887532211 011112236788864
No 5
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=28.81 E-value=28 Score=27.10 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=28.6
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCC
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRS 152 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S 152 (293)
.+.+||.|||-|+.+=+ .-|+|.+..+.....+... ..-++++|..
T Consensus 126 ~i~pGqRydvlv~~~~~------~~~~y~i~~~~~~~~~~~~---~~~ail~y~~ 171 (209)
T d1aoza2 126 DIYSGESYSVLITTDQN------PSENYWVSVGTRARHPNTP---PGLTLLNYLP 171 (209)
T ss_dssp EECTTCEEEEEEECCSC------TTCCEEEEEEEESSCCCSC---CEEEEEEETT
T ss_pred EEccCcEEEEEEEecCC------CCCceEEEEeccccCCCcc---ceeEEEEeCC
Confidence 36999999999987421 2367888887765543321 2234555543
No 6
>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}
Probab=27.35 E-value=29 Score=26.11 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=25.9
Q ss_pred cceeEEEEEecCCCCeEEEeeceeeeecCC
Q psy17268 123 GMFMVCAQLKDKTGDLISHSCRSAMLHYRS 152 (293)
Q Consensus 123 G~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S 152 (293)
|-=++.-++++.+|..++++++-++++-++
T Consensus 142 gRgl~~g~i~~~dG~LvAs~~QEgl~R~~~ 171 (171)
T d1c8ua2 142 ARGFVRGEFYTQDGVLVASTVQEGVMRNHN 171 (171)
T ss_dssp TEEEEEEEEEETTCCEEEEEEEEEEEEECC
T ss_pred CeeEEEEEEECCCCCEEEEEEEEEEEEecC
Confidence 555778889999999999999999998764
No 7
>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]}
Probab=26.73 E-value=29 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=29.4
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCCeEEEeeceeeeecCC
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRS 152 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S 152 (293)
.+.+||.|||-|+. |...|+|-+.++-....+. ......-++|+|..
T Consensus 106 ~i~~GqR~dvlv~~-------~~~~~~y~ira~~~~~~~~-~~~~~~~aiL~Y~g 152 (168)
T d1v10a2 106 TIFAGQRYSVVVEA-------NQAVGNYWIRANPSNGRNG-FTGGINSAIFRYQG 152 (168)
T ss_dssp EECTTCEEEEEEEC-------CSCSSEEEEEEEESSSSCS-CGGGTTEEEEEETT
T ss_pred EEccCceEEEEEEC-------CCCCCcEEEEEEeccCCCc-CCCCceEEEEEECC
Confidence 46999999999986 3456889888765433211 11112236777764
No 8
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId: 204285]}
Probab=24.01 E-value=35 Score=26.54 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.0
Q ss_pred cccCCCeEEEEEEEEecCCccCccCcceeEEEEEecCCCC-eEEEeeceeeeecCCh
Q psy17268 98 LLMVGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGD-LISHSCRSAMLHYRSS 153 (293)
Q Consensus 98 ~L~~~q~YdVsv~L~lPeS~~N~~lG~FmV~l~l~s~~g~-~l~~s~Rp~ml~y~S~ 153 (293)
.+.+||.|||-|+. |++.|+|-+.++....... --......++|+|...
T Consensus 104 ~i~~GqRydvlv~a-------~~~~~~Y~ir~~~~~~~~~~~~~~~~~~ail~Y~ga 153 (181)
T d2q9oa2 104 FLAVGQRYDVVIDA-------SRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGA 153 (181)
T ss_dssp EECTTCEEEEEEEC-------CSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTS
T ss_pred EecCCcEEEEEEeC-------CCCCccEEEEEeccccccccCCCCCceEEEEEECCC
Confidence 36899999999874 4566899888876432210 0011233478899764
No 9
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}
Probab=22.70 E-value=58 Score=23.65 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.1
Q ss_pred ccCCCeEEEEEEEEecCCccCccCc-ceeEEEEEecCCCCeE
Q psy17268 99 LMVGQPYKILMHLEMPESPTNIELG-MFMVCAQLKDKTGDLI 139 (293)
Q Consensus 99 L~~~q~YdVsv~L~lPeS~~N~~lG-~FmV~l~l~s~~g~~l 139 (293)
|..||.|.-+.++.++..... + ...+..+|.+.+|.+.
T Consensus 80 l~~G~~~~y~~~~~V~~~~P~---v~~v~v~~~L~~~~g~~~ 118 (129)
T d1xwva_ 80 LVKGQQYDAKYTWNVPKIAPK---SENVVVTVKLVGDNGVLA 118 (129)
T ss_dssp BCTTCEEEEEEEEECCTTSCC---BSCEEEEEEEEETTEEEE
T ss_pred ccCCeEEEEEEEeEccccCCC---ceEEEEEEEEECCCCeEE
Confidence 678999999999999987776 5 5788889998877543
No 10
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.73 E-value=1.6e+02 Score=21.97 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=39.9
Q ss_pred ccCCCeEEEEEE-EEe-cCCcc--CccCcceeEEEEEecCCCCeEEEeeceeeeecCC
Q psy17268 99 LMVGQPYKILMH-LEM-PESPT--NIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRS 152 (293)
Q Consensus 99 L~~~q~YdVsv~-L~l-PeS~~--N~~lG~FmV~l~l~s~~g~~l~~s~Rp~ml~y~S 152 (293)
+.+|....+.++ +++ |.+.. +.+.|.-.+..+..+.+|+++.+..+.+|++-+.
T Consensus 96 V~~GDTl~~~~eV~~~r~~~srp~~~~~GiV~~~~~~~NQ~ge~V~~~e~~~mi~~r~ 153 (178)
T d2bi0a1 96 PAVGDTLYTRTEVVGLRANSPKPGRAPTGLAGLRMTTIDRTDRLVLDFYRCAMLPASP 153 (178)
T ss_dssp CBTTCEEEEEEEEEEEEECCCCTTSCCEEEEEEEEEEECTTCCEEEEEEEEEEEECCT
T ss_pred ccCCCEEEEEEEEEEEEecCCCCCCCcceEEEEEEEEEcCCCCEEEEEEEEEEEEcCC
Confidence 345777777666 333 33322 3456888999999999999999999999999774
Done!