RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17268
(293 letters)
>gnl|CDD|219170 pfam06775, Seipin, Putative adipose-regulatory protein (Seipin).
Seipin is a protein of approximately 400 residues, in
humans, which is the product of a gene homologous to the
murine guanine nucleotide-binding protein (G protein)
gamma-3 linked gene. This gene is implicated in the
regulation of body fat distribution and insulin
resistance and particularly in the auto-immune disease
Berardinelli-Seip congenital lipodystrophy type 2.
Seipin has no similarity with other known proteins or
consensus motifs that might predict its function, but it
is predicted to contain two transmembrane domains at
residues 28-49 and 237-258, in human, and a third
transmembrane domain might be present at residues
155-173. Seipin may also be implicated in Silver spastic
paraplegia syndrome and distal hereditary motor
neuropathy type V.
Length = 198
Score = 234 bits (598), Expect = 1e-77
Identities = 96/205 (46%), Positives = 133/205 (64%), Gaps = 11/205 (5%)
Query: 41 SASVLWISIFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQLLM 100
+LW+++F Y FYY+Y+P +S RP+H + E +PTA+V L R LLM
Sbjct: 2 LLLLLWVAVFAYGLFYYSYVPTVSLERPLHFDYTTGCE------FPTANVSLDDR--LLM 53
Query: 101 VGQPYKILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSSLLITLKT 160
GQPY + + LE+PESP N++LGMFMV L ++G +I+ S R AML YRS L+ T T
Sbjct: 54 PGQPYDVTVELELPESPQNLKLGMFMVRVSLLSRSGKVIASSSRPAMLKYRSPLVRTAST 113
Query: 161 LVQAPFLILGGYEEKQTLTLELFS--EYEEDQNHPVTDIYIEVQSRF-IHIYSASIHINA 217
LV +P +LG EEKQTL +E+F E+ ED P T + +E+QSR I IYSAS+ I+A
Sbjct: 114 LVFSPLYVLGYSEEKQTLRVEMFERVEFLEDSYSPTTSLRVEIQSRAGIQIYSASLTIHA 173
Query: 218 ALSGLRYVMFTWPLLSAVLGISSNL 242
L+GLRY+M+ WP+ S ++GIS
Sbjct: 174 KLTGLRYLMYNWPITSFLVGISMFW 198
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 30.8 bits (70), Expect = 0.64
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 214 HINAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRL 272
+AAL+ +++ + P++ +L I L I +LY P ED + LF YG L
Sbjct: 43 AFDAALTHYQFLHASPPIVHYILHIVIGLGLIGHFI-----KLYKPSEDNK-LFEYGSL 95
>gnl|CDD|110955 pfam02007, MtrH, Tetrahydromethanopterin S-methyltransferase MtrH
subunit. The enzyme tetrahydromethanopterin
S-methyltransferase EC:2.1.1.86 is composed of eight
subunits. The enzyme is a membrane- associated enzyme
complex which catalyzes an energy-conserving,
sodium-ion-translocating step in methanogenesis from
hydrogen and carbon dioxide.
Length = 296
Score = 29.0 bits (65), Expect = 2.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 199 IEVQSRFIHIYSASIH-INAALSGLRYVMFTWPLLSAVLGISSNLIFIVFICAVSWWQLY 257
I V+++F + IH +A LR P AV + SNL+ + A + LY
Sbjct: 208 IAVKAKFGLPVGSGIHNAPSAWDWLRKFKKKLPEAGAVCDVGSNLVQQI---AGGDFVLY 264
Query: 258 GPKEDLRSLF 267
GP E+ R +F
Sbjct: 265 GPIENARMIF 274
>gnl|CDD|147496 pfam05341, DUF708, Protein of unknown function (DUF708). This
family consists of several uncharacterized
nucleopolyhedrovirus proteins of unknown function.
Length = 105
Score = 27.2 bits (61), Expect = 3.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 179 TLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLLSAVLGI 238
LE F D P IY +++ + + I + S+ N AL+ RY + L I
Sbjct: 47 NLENF-----DYKQP---IYYDLKRKQLLINNESV--NKALNRPRYAVLD-TLN-----I 90
Query: 239 SSNLIFIVFICAV 251
S IF+ FI V
Sbjct: 91 SPIHIFLAFILIV 103
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 28.3 bits (63), Expect = 4.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 45 LWISIFLYIAFYYTYIPN-ISHVRPVHLKFNACDEQKGVCSYPT---AHVQLTKRHQLLM 100
L I I LY+ ++I N + F++ + +K + LTKR +L
Sbjct: 4 LPI-ILLYLGVLNSFITNKAVYPPNPLSLFSSPNRKKSAPEQVPTGKNKLLLTKRSKLKG 62
Query: 101 VGQPYKILMHLEMPE 115
+ +P K+ H E
Sbjct: 63 IPKPRKLHKHGFWAE 77
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 28.1 bits (62), Expect = 6.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 229 WPLLSAVLGISSNLIFIVFICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFYKED 288
W L+S + ++ + C + + + DL F Y D++ FF D
Sbjct: 445 WALISICSAAAGSIAILSLFCILLFGL----RRDLIEDFRYIC------QDDDHFFIDND 494
Query: 289 DDN 291
DN
Sbjct: 495 VDN 497
>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 27.9 bits (62), Expect = 6.9
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 192 HPVTDIYIEVQSRFIHIYSASIHINAALSGLRYVM---FTWPLLSAVLGISSNLIFIV 246
HP+T + ++ R A I I YV+ PLL A +G S+ L+F V
Sbjct: 17 HPLT-APVRLRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAV 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,830,751
Number of extensions: 1390149
Number of successful extensions: 1887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 32
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)