RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17268
(293 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 8e-05
Identities = 49/321 (15%), Positives = 90/321 (28%), Gaps = 126/321 (39%)
Query: 86 PTA-HV---QLTKRHQLLMVGQPYKILMHLEMPESPTNIEL-GMFM-VCAQLKDK----- 134
PTA QL ++ ++ +P + + P +P EL G F+ + L +
Sbjct: 23 PTASFFIASQLQEQFNKIL-PEPTEGFAADDEPTTP--AELVGKFLGYVSSLVEPSKVGQ 79
Query: 135 TGDLIS----------------HSCRSAMLHYRSSLLITLKTLVQA----------P--- 165
+++ H+ + +L + L+ K L++ P
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 166 -----------------FLILGG------Y-EEKQTLTLELFSEYEEDQNHPVTDIYIEV 201
I GG Y EE + +L+ Y V D+
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR----DLYQTYH----VLVGDLIKFS 191
Query: 202 QSRFIH----------IYSASIHINAALSG---------LRYVMFTWPL----------- 231
+++ ++I L L + + PL
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 232 ---------------LSAVLGISSNLIFIVFI-CAVSWWQLYG-PKEDLRSLFFYGRLRS 274
L G S L+ V I SW + ++ + LFF G +R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-VRC 310
Query: 275 LATSDEESF---FYKEDDDNG 292
S ++ +N
Sbjct: 311 YEAYPNTSLPPSILEDSLENN 331
Score = 36.6 bits (84), Expect = 0.011
Identities = 55/320 (17%), Positives = 96/320 (30%), Gaps = 88/320 (27%)
Query: 4 FVSQFINRRTELLKQRSIKELQNVWEKIFHSSMLV---------------LLSASVLWIS 48
V I E L + EK+F + + LLS +
Sbjct: 183 LVGDLIKFSAETLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 49 IFLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQ----------------- 91
I + +Y + P L+ KG T H Q
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELR----SYLKGA----TGHSQGLVTAVAIAETDSWESF 292
Query: 92 --LTKR--HQLLMVG---Q---PYKILMHLEMPESPTNIELG----MFMVCAQLKDKTGD 137
++ L +G P L + +S N E G M + +++ D
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-GVPSPMLSISNLTQEQVQD 351
Query: 138 LISHSCRSAMLHYRSSLLITLKTLVQAP--FLILGGYEEKQTLTLEL---FSEYEEDQNH 192
++ + L + I +LV ++ G + L L L + DQ+
Sbjct: 352 YVNKTNSH--LPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 193 -PVTDIYIEVQSRFIHIYSASIHINAALSGLRYVMFTWPLL-SAVLGISSNLIFIVFICA 250
P ++ ++ +RF+ + ++ H S LL A I+ +L+
Sbjct: 407 IPFSERKLKFSNRFLPV-ASPFH-----S---------HLLVPASDLINKDLVKNNVSFN 451
Query: 251 VSWWQL--YGPK--EDLRSL 266
Q+ Y DLR L
Sbjct: 452 AKDIQIPVYDTFDGSDLRVL 471
Score = 33.1 bits (75), Expect = 0.13
Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 86/221 (38%)
Query: 140 SHSCRSAMLHY---RSSLLI---------TLK----TLVQAPFLILGGYEEKQTLTLELF 183
++S R L + LL+ L+ ++ P +E T EL
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT-PAELV 61
Query: 184 SEY--------EEDQNHPVTDI----YIEVQSRF-----IHIYSASIHINAALSGLR--- 223
++ E + + E ++ + IH +A + + ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 224 ----YVM--------FTWPLLSAVL-----GISSNLIFIVFICAVSWW--QLYGPKED-- 262
Y+ F SA+ G + + +F Q G +D
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIF-------GGQ--GNTDDYF 170
Query: 263 --LRSLF-FY------------GRLRSLATS--DEESFFYK 286
LR L+ Y L L + D E F +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 39/338 (11%), Positives = 96/338 (28%), Gaps = 93/338 (27%)
Query: 4 FVSQFINRRTELLK-QRSIKELQNVWEKIFHS------SMLVLLSAS-----------VL 45
F ++R LK ++++ EL+ + + + L +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 46 WISI--------FLYIAFYYTYIPNISHVRPVHLKFNACDEQKGVCSYPTAHVQLTKRHQ 97
W+++ L + + + + + N + + +
Sbjct: 186 WLNLKNCNSPETVLEM------LQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 98 LLMVGQPYK----ILMHLEMPESPTNIELGMFMVCAQLKDKTGDLISHSCRSAMLHYRSS 153
L+ +PY+ +L++++ + F +L SC+ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAK-----AWNAF-----------NL---SCKILLTTRFKQ 276
Query: 154 LLITLKTLVQAPFLI---LGGYEEKQTLTLELFSEYEEDQNHPVTDIYIEVQS---RFIH 207
+ L + + L +Y + D+ EV + R +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKY---LDCRPQDLPREVLTTNPRRLS 331
Query: 208 IYSASIHINAALSGLRYVMFTWPLLSAVLGISSNLI-----------FIVF--------- 247
I + SI A + L+ ++ S N++ VF
Sbjct: 332 IIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 248 ICAVSWWQLYGPKEDLRSLFFYGRLRSLATSDEESFFY 285
+ ++ W+ + K D+ + SL +
Sbjct: 391 LLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQPKESTI 426
Score = 31.4 bits (70), Expect = 0.48
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 56/178 (31%)
Query: 129 AQLKDKTGDLISH---------SCRSAMLHYRSSL-------LITLKTLVQAPFLILGGY 172
+ + + D++S C+ +S L +I K V +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 173 EEKQTLTLELFSEYEEDQNHP---------------VTDIYIEVQSRF---------IHI 208
KQ ++ F E N+ +T +YIE + R ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 209 YSASIH--INAALSGLR---YV----MF----TWPLLSAVLGISSNLIFIVFICAVSW 253
+ + AL LR V + TW + V S + + W
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVC--LSYKVQCKMDFKIFW 186
Score = 30.6 bits (68), Expect = 0.72
Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 43/250 (17%)
Query: 2 KNFVSQFINRRTELLKQRSIKELQ-NVWEKIFHSSMLVLLSASVLWISIFLYIAFYYTYI 60
N+ ++ T +++ S+ L+ + K+F L + S I L ++ I
Sbjct: 345 DNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDR--LSVFPPSA-HIPTILLSLIWFDVI 400
Query: 61 PNISHVRPVHLKFN-----ACDEQKGVCSYPTAHVQLTKR-------HQLLMVGQPYKIL 108
+ V V K + ++ S P+ +++L + H+ ++ Y I
Sbjct: 401 KSD--VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DHYNIP 456
Query: 109 MHLEMPESPTNIELGMF-------MVCAQLKDKTGDLISHSCRSAMLHYR--SSLLITLK 159
+ + F + + ++ R L +R +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDS 511
Query: 160 TLVQAPFLILGGYEEKQTLT-LELFSEYEEDQNHPVTDIYIEVQSRFIHIYSASIHINAA 218
T A IL TL L+ + Y D N P + + F+ ++ +
Sbjct: 512 TAWNASGSIL------NTLQQLKFYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 219 LSGLRYVMFT 228
LR +
Sbjct: 565 TDLLRIALMA 574
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.12
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 29/52 (55%)
Query: 174 EKQTL-----TLELFSEYEEDQNHPVTDIYIEVQSRFIHIYSA-SIHINAAL 219
EKQ L +L+L Y +D SA ++ I A +
Sbjct: 18 EKQALKKLQASLKL---YADD--------------------SAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.46
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 17 KQRSIKELQNVWEKIF--HSSMLVLLSASV 44
KQ ++K+LQ K++ S+ + + A++
Sbjct: 19 KQ-ALKKLQASL-KLYADDSAPALAIKATM 46
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics,
PSI, MCSG, protein structure initiative; 1.60A
{Neisseria meningitidis MC58}
Length = 182
Score = 27.6 bits (62), Expect = 3.5
Identities = 10/69 (14%), Positives = 15/69 (21%), Gaps = 22/69 (31%)
Query: 170 GGYEEKQ-TL--TLELFSEYEEDQNHPV-----TDIYIEVQSR---------FIHIYSAS 212
G E + S D V + ++ I
Sbjct: 22 GSDREADLAQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAI-----E 76
Query: 213 IHINAALSG 221
H NAA +
Sbjct: 77 FHTNAAANK 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,299,493
Number of extensions: 235463
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 11
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)