BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1727
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 92/146 (63%), Gaps = 10/146 (6%)
Query: 65 DCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVN 124
DCDK+D C GGL SNA+ I K GGLE E DY Y+G ++C + E+ +V IQ V
Sbjct: 55 DCDKMDKACMGGLPSNAYSAI--KNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVE 112
Query: 125 VSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGV 184
+S +E ++A +L K GP++VAINA MQFY G+S PL+ LC + +DH VL+VGYG
Sbjct: 113 LSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWL--IDHAVLLVGYGQ 170
Query: 185 HKTKFTHKIQPYWIIKNSWGPHWGEK 210
P+W IKNSWG WGEK
Sbjct: 171 RSDV------PFWAIKNSWGTDWGEK 190
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY---KGSNRACHLNKEEIRVKI 119
LV CD +D GCGGGLM NAF I++ GG + E YPY G C +N EI I
Sbjct: 53 LVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAI 112
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+V++ DE +A YL +NGP+A+A++A + Y GG+ L + LDHGVL+
Sbjct: 113 TDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGI------LTSCTSEQLDHGVLL 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGY PYWIIKNSW WGE
Sbjct: 167 VGYNDASNP------PYWIIKNSWSNMWGED 191
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY---KGSNRACHLNKEEIRVKI 119
LV CDK D+GC GGLM+NAFE I+ + G + E YPY +G + C + + I
Sbjct: 53 LVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+V + DE ++A +L NGP+AVA++A++ Y GGV + + LDHGVL+
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGV------MTSCVSEQLDHGVLL 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGY PYWIIKNSW WGE+
Sbjct: 167 VGYN------DSAAVPYWIIKNSWTTQWGEE 191
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 57 THLALK-LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY---KGSNRACHLNK 112
T+LA + LV CDK D+GC GGLM+NAFE I+ + G + E YPY +G + C +
Sbjct: 46 TNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSG 105
Query: 113 EEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDN 172
+ I +V + DE ++A +L NGP+AVA++A++ Y GGV + +
Sbjct: 106 HTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGV------MTSCVSEQ 159
Query: 173 LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
LDHGVL+VGY PYWIIKNSW WGE+
Sbjct: 160 LDHGVLLVGYN------DGAAVPYWIIKNSWTTQWGEE 191
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 57 THLALK-LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY---KGSNRACHLNK 112
T+LA + LV CDK D+GC GGLM+NAFE I+ + G + E YPY +G + C +
Sbjct: 46 TNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSG 105
Query: 113 EEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDN 172
+ I +V + DE ++A +L NGP+AVA++A++ Y GGV + +
Sbjct: 106 HTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGV------MTSCVSEQ 159
Query: 173 LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
LDHGVL+VGY PYWIIKNSW WGE+
Sbjct: 160 LDHGVLLVGYN------DGAAVPYWIIKNSWTTQWGEE 191
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY---KGSNRACHLNKEEIRVKI 119
LV CDK D+GC GGLM+NAFE I+ + G + E YPY +G + C + + I
Sbjct: 53 LVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+V + DE ++A +L NGP+AVA++A++ Y GGV + + LDHGVL+
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGV------MTSCVSEALDHGVLL 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGY PYWIIKNSW WGE+
Sbjct: 167 VGYN------DSAAVPYWIIKNSWTTQWGEE 191
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 20/156 (12%)
Query: 62 KLVDCDKVD-AGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNK----EEIR 116
+L+DCD D GC GGLM NAFE I K GGL E YPY+ + C++ + +
Sbjct: 55 ELIDCDTADNDGCQGGLMDNAFEYI--KNNGGLITEAAYPYRAARGTCNVARAAQNSPVV 112
Query: 117 VKIQSYVNVSSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLD 174
V I + +V ++ E V N P++VA+ A+ A FY GV F + G + LD
Sbjct: 113 VHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGV-----FTGECGTE-LD 166
Query: 175 HGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
HGV +VGYGV + + YW +KNSWGP WGE+
Sbjct: 167 HGVAVVGYGVAEDG-----KAYWTVKNSWGPSWGEQ 197
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 62 KLVDCD-KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEI-RVKI 119
+LVDCD + GC GGLM AFE I K GG+ E +YPY+ + C ++KE V I
Sbjct: 53 ELVDCDTDQNQGCNGGLMDYAFEFI--KQRGGITTEANYPYEAYDGTCDVSKENAPAVSI 110
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ NV ++ V N P++VAI+A QFY GV F G + LDHGV
Sbjct: 111 DGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGV-----FTGSCGTE-LDHGV 164
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
IVGYG T YW +KNSWGP WGEK
Sbjct: 165 AIVGYGT-----TIDGTKYWTVKNSWGPEWGEK 192
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + + G++ E YPY G +C N K + Y
Sbjct: 152 LVDCVSENDGCGGGYMTNAFQYV--QKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 209
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + C DNL+H VL
Sbjct: 210 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES--CNS--DNLNHAVLA 265
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 266 VGYGIQKG------NKHWIIKNSWGENWGNK 290
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + + G++ E YPY G + +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYV--QRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGY 110
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENC----SSDNLNHAVLA 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG WG K
Sbjct: 167 VGYGIQKG------NKHWIIKNSWGESWGNK 191
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 187
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 188 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 245
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 246 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 290
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 72 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 129
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 130 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 187
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 188 IYFEPDCSSEDMDHGVLVVGYGFESTESDNN--KYWLVKNSWGEEWG 232
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 110
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC----NSDNLNHAVLA 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 167 VGYGIQKG------NKHWIIKNSWGENWGNK 191
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 55 LVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 112
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 113 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC----NSDNLNHAVLA 168
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 169 VGYGIQKG------NKHWIIKNSWGENWGNK 193
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 51 LVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 108
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 109 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC----NSDNLNHAVLA 164
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 165 VGYGIQKG------NKHWIIKNSWGENWGNK 189
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 52 LVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 109
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 110 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC----NSDNLNHAVLA 165
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 166 VGYGIQKG------NKHWIIKNSWGENWGNK 190
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 194
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 194
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 53 RGEGTHLALK-LVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH 109
RG T L+ + L+DC +AGC GG M +AF I G+ E YPY+ C
Sbjct: 156 RGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY---GIMSESAYPYEAQGDYCR 212
Query: 110 LNKEEIRVKIQSYVNV-SSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCK 167
+ + + Y ++ S DE +A + + GP+AVAI+A + +QFY GG+ + C
Sbjct: 213 FDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQT--CN 270
Query: 168 GGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
+L+HGVL+VGYG + Q YWI+KNSWG WGE
Sbjct: 271 --QSDLNHGVLVVGYG------SDNGQDYWILKNSWGSGWGE 304
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 92
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 93 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 150
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 151 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 195
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 92
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 93 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 150
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 151 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 195
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 194
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ + YW++KNSWG WG
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTESDN--NKYWLVKNSWGEEWG 194
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 183
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 184 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 241
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ YW++KNSWG WG
Sbjct: 242 IYFEPDCSSEDMDHGVLVVGYGFESTE--SDGNKYWLVKNSWGEEWG 286
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +++DHGVL+VGYG T+ YW++KNSWG WG
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFESTE--SDDNKYWLVKNSWGEEWG 194
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYVQKNR--GIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 110
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A+ + QFY GV + DNL+H VL
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC----NSDNLNHAVLA 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
VGYG K +WIIKNSWG +WG
Sbjct: 167 VGYGESKG------NKHWIIKNSWGENWG 189
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 63 LVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
LVDC + + GC GG M+ AF+ + K GGL+ E+ YPY + C E +
Sbjct: 53 LVDCSRPQGNQGCNGGFMARAFQYV--KENGGLDSEESYPYVAVDEICKYRPENSVAQDT 110
Query: 121 SYVNVS-SDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ V+ E + K + GP++VA++A ++ QFY G+ F NLDHGV
Sbjct: 111 GFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI----YFEPDCSSKNLDHGV 166
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
L+VGYG + YW++KNSWGP WG
Sbjct: 167 LVVGYGFEGANSDN--SKYWLVKNSWGPEWG 195
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 19/173 (10%)
Query: 41 RIFRANLKKIQIRGEGTHLALKLVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKD 98
++FR K + + + LVDC + + GC GG M+ AF+ + K GGL+ E+
Sbjct: 37 QMFRKTGKLVSLSEQ------NLVDCSRPQGNQGCNGGFMARAFQYV--KENGGLDSEES 88
Query: 99 YPYKGSNRACHLNKEEIRVKIQSYVNVS-SDETEMAKYLVKNGPMAVAINA--NAMQFYF 155
YPY + C E + + V+ E + K + GP++VA++A ++ QFY
Sbjct: 89 YPYVAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYK 148
Query: 156 GGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
G+ F NLDHGVL+VGYG + YW++KNSWGP WG
Sbjct: 149 SGI----YFEPDCSSKNLDHGVLVVGYGFEGANSDN--SKYWLVKNSWGPEWG 195
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC GC GG M++AF + GG++ E YPY+ ++ CH + ++ ++
Sbjct: 169 QLVDCVPNALGCSGGWMNDAFTYVAQN--GGIDSEGAYPYEMADGNCHYDPNQVAARLSG 226
Query: 122 YVNVSS-DETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIV 180
YV +S DE +A + GP+AVA +A+ FG S + + + H VLIV
Sbjct: 227 YVYLSGPDENMLADMVATKGPVAVAFDADDP---FGSYSGGVYYNPTCETNKFTHAVLIV 283
Query: 181 GYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
GYG Q YW++KNSWG WG
Sbjct: 284 GYG------NENGQDYWLVKNSWGDGWG 305
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + + G++ E YPY G + +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYV--QRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGY 110
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + GP++VAI+A+ + QFY GV + C D L+H VL
Sbjct: 111 REIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDEN--CSS--DALNHAVLA 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
VGYG+ +WIIKNSWG WG
Sbjct: 167 VGYGIQAG------NKHWIIKNSWGESWG 189
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ F +L+H +L+VGYG F Q YW++KNSWG WG
Sbjct: 150 IYFSSDCSSSSLNHAMLVVGYG-----FISNNQKYWLVKNSWGEEWG 191
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 26/165 (15%)
Query: 51 QIRGEGTHLAL---KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRA 107
QIR G ++L +LVDC K + GC GG A++ II+ GG++ E +YPYK
Sbjct: 39 QIR-TGNLISLSEQQLVDCSKKNHGCKGGYFDRAYQYIIAN--GGIDTEANYPYKAFQGP 95
Query: 108 CHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGVSHPLKFL 165
C K+ +R I V K V + P VAI+A++ QF Y GG+ F
Sbjct: 96 CRAAKKVVR--IDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGI-----FT 148
Query: 166 CKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G L+HGV+IVGYG + YWI++NSWG HWGE+
Sbjct: 149 GPCGT-KLNHGVVIVGYG----------KDYWIVRNSWGRHWGEQ 182
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 62 KLVDCDKVDA--GCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKI 119
+L+DC + + C GG M++AF+ ++ GG+ E YPY + C E VKI
Sbjct: 58 ELMDCSRAEGNQSCSGGEMNDAFQYVLDS--GGICSEDAYPYLARDEECRAQSCEKVVKI 115
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +V K + P+++AI A+ M F F H F G D LDHGVL+
Sbjct: 116 LGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQF---YHEGVFDASCGTD-LDHGVLL 171
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
VGYG K + +WI+KNSWG WG
Sbjct: 172 VGYGTDK----ESKKDFWIMKNSWGTGWG 196
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 16/151 (10%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC + GC GG M+ AF+ I++ GG+ E+ YPY+G + C+ V I S
Sbjct: 54 QLVDCTTANHGCRGGWMNPAFQFIVNN--GGINSEETYPYRGQDGICNSTVNAPVVSIDS 111
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
Y NV S + + V N P++V ++A Q Y G+ C + +H + +
Sbjct: 112 YENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGI---FTGSCN---ISANHALTV 165
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG K +WI+KNSWG +WGE
Sbjct: 166 VGYGTENDK------DFWIVKNSWGKNWGES 190
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 18/160 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDCD GC GG M+NAF+ II+ GG++ +++YPY +C + + V I
Sbjct: 52 ELVDCDTASHGCNGGWMNNAFQYIITN--GGIDTQQNYPYSAVQGSCKPYRLRV-VSING 108
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ V+ + + V + P++V + A F Y G+ F G +HGV+I
Sbjct: 109 FQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGI-----FTGPCGTAQ-NHGVVI 162
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKN 219
VGYG K YWI++NSWG +WG + W+ +N
Sbjct: 163 VGYGTQSGK------NYWIVRNSWGQNWGNQGY-IWMERN 195
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
++VDCD GG +AF +I+ GG+ + +YPY G + C LNK I +I
Sbjct: 52 QIVDCDTXXXXXXGGDADDAFRWVITN--GGIASDANYPYTGVDGTCDLNKP-IAARIDG 108
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAI--NANAMQFYFGGVSHPLKFL---CKGGMDNLDHG 176
Y NV + + + + K P++V I ++ + Q Y G P F C +DH
Sbjct: 109 YTNVPNSSSALLDAVAKQ-PVSVNIYTSSTSFQLYTG----PGIFAGSSCSDDPATVDHT 163
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
VLIVGYG + T YWI+KNSWG WG
Sbjct: 164 VLIVGYGSNGTN-----ADYWIVKNSWGTEWG 190
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 27/158 (17%)
Query: 62 KLVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKI 119
+LVDC + + GCGGGLM NA++ + GLE E YPY C NK+ K+
Sbjct: 143 QLVDCSRPWGNNGCGGGLMENAYQYLKQF---GLETESSYPYTAVEGQCRYNKQLGVAKV 199
Query: 120 QSYVNV-SSDETEMAKYLVKNGPMAVAINANA-MQFYFGGV-----SHPLKFLCKGGMDN 172
+ V S E E+ + GP AVA++ + Y G+ PL+
Sbjct: 200 TGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLR--------- 250
Query: 173 LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
++H VL VGYG T YWI+KNSWG WGE+
Sbjct: 251 VNHAVLAVGYG------TQGGTDYWIVKNSWGLSWGER 282
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 85/166 (51%), Gaps = 28/166 (16%)
Query: 51 QIRGEGTHLAL---KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRA 107
QIR G ++L +LVDC+K + GC GG A++ II GG++ E +YPYK
Sbjct: 39 QIR-TGNLISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDN--GGIDTEANYPYKAVQGP 95
Query: 108 CHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGV-SHPLKF 164
C K+ +R I Y V K V + P VAI+A++ QF Y G+ S P
Sbjct: 96 CRAAKKVVR--IDGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCG- 152
Query: 165 LCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
L+HGV+IVGY + YWI++NSWG +WGE+
Sbjct: 153 ------TKLNHGVVIVGY----------WKDYWIVRNSWGRYWGEQ 182
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 50 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
+ Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCRKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GEK
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEK 193
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 62 KLVDCDKVD--AGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN-KEEIRVK 118
+LVDC + GC GG M++ F+ II+ GG+ E +YPY C+L+ ++E V
Sbjct: 52 ELVDCGRTQNTRGCDGGFMTDGFQFIINN--GGINTEANYPYTAEEGQCNLDLQQEKYVS 109
Query: 119 IQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGVSHPLKFLCKGGMDNLDHG 176
I +Y NV + + V P++VA+ A F Y G+ F G +DH
Sbjct: 110 IDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI-----FTGPCGT-AVDHA 163
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGYG T YWI+KNSWG WGE+
Sbjct: 164 VTIVGYG------TEGGIDYWIVKNSWGTTWGEE 191
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGS-NRACHLNKEEIRVKIQ 120
+LVDC + GC GG ++NAF+ +I GGL + DYPY + C+L + R I+
Sbjct: 71 ELVDCSVKNNGCYGGYITNAFDDMIDL--GGLCSQDDYPYVSNLPETCNLKRCNERYTIK 128
Query: 121 SYVNVSSDE-TEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
SYV++ D+ E +YL GP++++I A + FY GG C G N H V+
Sbjct: 129 SYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDGE---C-GAAPN--HAVI 179
Query: 179 IVGYGVHK--TKFTHKIQP--YWIIKNSWGPHWGE 209
+VGYG+ + T +++ Y+IIKNSWG WGE
Sbjct: 180 LVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGE 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 62 KLVDCDKVD--AGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN-KEEIRVK 118
+LVDC + GC GG M++ F+ II+ GG+ E +YPY C+L+ ++E V
Sbjct: 52 ELVDCGRTQNTRGCDGGFMTDGFQFIINN--GGINTEANYPYTAEEGQCNLDLQQEKYVS 109
Query: 119 IQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGVSHPLKFLCKGGMDNLDHG 176
I +Y NV + + V P++VA+ A F Y G+ F G +DH
Sbjct: 110 IDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGI-----FTGPCGT-AVDHA 163
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGYG T YWI+KNSWG WGE+
Sbjct: 164 VTIVGYG------TEGGIDYWIVKNSWGTTWGEE 191
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C +
Sbjct: 50 AQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSAYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
+ Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCRKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GEK
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEK 193
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G++ + YPYK ++ C + +
Sbjct: 148 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDN--KGIDSDASYPYKAMDQKCQYDSKYRA 205
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 206 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 255
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 256 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 291
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 51 QIRGEGTHLAL---KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRA 107
QIR G ++L +LVDCDK + GC GG A++ II+ GG++ + +YPYK
Sbjct: 39 QIR-TGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINN--GGIDTQANYPYKAVQGP 95
Query: 108 CHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGV-SHPLKF 164
C + V I Y V K V P VAI+A++ QF Y G+ S P
Sbjct: 96 CQAASKV--VSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCG- 152
Query: 165 LCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
L+HGV IVGY + YWI++NSWG +WGEK
Sbjct: 153 ------TKLNHGVTIVGYQAN----------YWIVRNSWGRYWGEK 182
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 52 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 109
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 110 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 159
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 160 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 195
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 50 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 193
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 50 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 193
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 57 THLALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKE 113
T A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 47 TLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSK 104
Query: 114 EIRVKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM-- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 105 YRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYY 154
Query: 171 -----DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 155 EPSCTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 193
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 51 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 108
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 109 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 158
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 159 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 194
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 51 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 108
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 109 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 158
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 159 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 194
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 53 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 110
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 111 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 160
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 161 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 196
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 51 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 108
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 109 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 158
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 159 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 194
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK ++ C + +
Sbjct: 50 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDQKCQYDSKYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 193
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 60 ALKLVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR 116
A LVDC + GC GG M+ AF+ II G ++ + YPYK + C + +
Sbjct: 50 AQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG--IDSDASYPYKAMDLKCQYDSKYRA 107
Query: 117 VKIQSYVNVSSDETEMAKYLVKN-GPMAVAINANAMQFYFGGVSHPLKFLCKGGM----- 170
Y + ++ K V N GP++V ++A HP FL + G+
Sbjct: 108 ATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR----------HPSFFLYRSGVYYEPS 157
Query: 171 --DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
N++HGVL+VGYG K YW++KNSWG ++GE+
Sbjct: 158 CTQNVNHGVLVVGYGDLNGK------EYWLVKNSWGHNFGEE 193
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 32/169 (18%)
Query: 62 KLVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKI 119
+LVDC + + GC GGL S AFE I + G+ GE YPYKG + C ++ +
Sbjct: 53 QLVDCAQNFNNHGCQGGLPSQAFEYI--RYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFV 110
Query: 120 QSYVNVS-SDETEMAKYLVKNGPMAVAIN-ANAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ N++ +DE M + + P++ A N Y G+ C D ++H V
Sbjct: 111 KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTS--CHKTPDKVNHAV 168
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWGPRWG 226
L VGYG E +P+WI+KNSWGP+WG
Sbjct: 169 LAVGYGE------------------------ENGIPYWIVKNSWGPQWG 193
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 16/155 (10%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY-KGSNRACHLNKEEIRVKIQ 120
+LVDC + GC GGL++NAFE +I GG+ + DYPY + C++++ + I+
Sbjct: 68 ELVDCSFKNYGCNGGLINNAFEDMIEL--GGICPDGDYPYVSDAPNLCNIDRCTEKYGIK 125
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAIN-ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+Y++V ++ + A + GP+++++ ++ FY G+ F + G D L+H V++
Sbjct: 126 NYLSVPDNKLKEALRFL--GPISISVAVSDDFAFYKEGI-----FDGECG-DQLNHAVML 177
Query: 180 VGYGVHK--TKFTHKIQP--YWIIKNSWGPHWGEK 210
VG+G+ + T K + Y+IIKNSWG WGE+
Sbjct: 178 VGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 212
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 16/155 (10%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY-KGSNRACHLNKEEIRVKIQ 120
+LVDC + GC GGL++NAFE +I GG+ + DYPY + C++++ + I+
Sbjct: 69 ELVDCSFKNYGCNGGLINNAFEDMIEL--GGICPDGDYPYVSDAPNLCNIDRCTEKYGIK 126
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAIN-ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+Y++V ++ + A + GP+++++ ++ FY G+ F + G D L+H V++
Sbjct: 127 NYLSVPDNKLKEALRFL--GPISISVAVSDDFAFYKEGI-----FDGECG-DQLNHAVML 178
Query: 180 VGYGVHK--TKFTHKIQP--YWIIKNSWGPHWGEK 210
VG+G+ + T K + Y+IIKNSWG WGE+
Sbjct: 179 VGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKT 187
+ F +++DHGVL+VGYG T
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFEST 175
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 47 LKKIQIRGEGTHLALK---LVDCD--KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPY 101
L+ R G ++L LVDC + + GC GGLM AF+ + + GGL+ E+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV--QDNGGLDSEESYPY 91
Query: 102 KGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHP 161
+ + +C N + +V++ E + K + GP++VAI+A F F
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKT 187
+ F +++DHGVL+VGYG T
Sbjct: 150 IYFEPDCSSEDMDHGVLVVGYGFEST 175
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 19/154 (12%)
Query: 62 KLVDCDKVD--AGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN-KEEIRVK 118
+L+DC + GC GG +++ F+ II+ GG+ E++YPY + C+++ + E V
Sbjct: 52 ELIDCGRTQNTRGCNGGYITDGFQFIINN--GGINTEENYPYTAQDGECNVDLQNEKYVT 109
Query: 119 IQSYVNVSSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHG 176
I +Y NV + + V P++VA++A +A + Y G+ F G +DH
Sbjct: 110 IDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGI-----FTGPCGT-AIDHA 163
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGYG T YWI+KNSW WGE+
Sbjct: 164 VTIVGYG------TEGGIDYWIVKNSWDTTWGEE 191
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+LVDCDK GC GG + + + + + G+ K YPY+ C +K +VKI
Sbjct: 52 ELVDCDKHSYGCKGGYQTTSLQYVANN---GVHTSKVYPYQAKQYKCRATDKPGPKVKIT 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
Y V S+ + N P++V + A Q Y GV C LDH V
Sbjct: 109 GYKRVPSNXETSFLGALANQPLSVLVEAGGKPFQLYKSGV---FDGPCG---TKLDHAVT 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG K Y IIKNSWGP+WGEK
Sbjct: 163 AVGYGTSDGK------NYIIIKNSWGPNWGEK 188
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 45 ANLKKIQIRGEGTHLAL---KLVDCDKVD--AGCGGGLMSNAFETIISKLGGGLEGEKDY 99
A ++ I G+ ++L +L+DC + GC GG +++ F+ II+ GG+ E++Y
Sbjct: 32 ATVEGINKITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIIND--GGINTEENY 89
Query: 100 PYKGSNRACHLNKEEIR-VKIQSYVNVSSDETEMAKYLVKNGPMAVAINA--NAMQFYFG 156
PY + C + ++ + V I +Y NV + + V P++VA++A +A + Y
Sbjct: 90 PYTAQDGDCDVALQDQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYAS 149
Query: 157 GVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G+ F G +DH ++IVGYG T YWI+KNSW WGE+
Sbjct: 150 GI-----FTGPCGT-AVDHAIVIVGYG------TEGGVDYWIVKNSWDTTWGEE 191
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHL-NKEEIRVKIQ 120
+L+DC++ GC GG + + + ++ G+ E++YPY+ C +K+ +V I
Sbjct: 52 ELLDCERRSHGCDGGYQTTSLQYVVDN---GVHTEREYPYEKKQGRCRAKDKKGPKVYIT 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
Y V +++ + N P++V ++ QFY GG+ + C N DH V
Sbjct: 109 GYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGI---YEGPCG---TNTDHAVT 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + Y ++KNSWGP+WGEK
Sbjct: 163 AVGYG----------KTYLLLKNSWGPNWGEK 184
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+L+DC GC G +FE ++ GG+ E DYPYK + C N+ + +V I +
Sbjct: 53 ELIDCVDESEGCYNGWHYQSFEWVVKH--GGIASEADYPYKARDGKCKANEIQDKVTIDN 110
Query: 122 Y-------VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLD 174
Y + S+ + V P++V+I+A FY GG+ G ++
Sbjct: 111 YGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPYG---IN 167
Query: 175 HGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
H VLIVGYG + YWI KNSWG WG
Sbjct: 168 HFVLIVGYG------SEDGVDYWIAKNSWGEDWG 195
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 52 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 109 GVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +IKNSWG WGE
Sbjct: 163 AVGYGPN----------YILIKNSWGTGWGE 183
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACH-LNKEEIRVKIQ 120
+L+DCD+ GC GG +A + + G+ YPY+G R C K K
Sbjct: 203 ELLDCDRRSYGCNGGYPWSALQLVAQY---GIHYRNTYPYEGVQRYCRSREKGPYAAKTD 259
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
V Y + N P++V + A Q Y GG+ F+ G + +DH V
Sbjct: 260 GVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI-----FVGPCG-NKVDHAVA 313
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
VGYG + Y +I+NSWG WGE
Sbjct: 314 AVGYGPN----------YILIRNSWGTGWGE 334
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 16 VAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ +F ++ KHNK Y +E R IF+ NLK I
Sbjct: 63 IQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYID 98
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 29 SYATKEEYHKRLRIFRANLKKIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIIS- 87
S+A+ R+RI N + + + ++V C GC GG F +I+
Sbjct: 235 SFASLGMLEARIRILTNNSQTPILSPQ------EVVSCSPYAQGCDGG-----FPYLIAG 283
Query: 88 --KLGGGLEGEKDYPYKGSNRACHLNKEEIR-----VKIQSYVNVSSDETEMAKYLVKNG 140
G+ E +PY ++ C + +R +E M LVK+G
Sbjct: 284 KYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHG 343
Query: 141 PMAVA--INANAMQFYFG-----GVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKI 193
PMAVA ++ + + ++ G G+S P + +H VL+VGYG K T
Sbjct: 344 PMAVAFEVHDDFLHYHSGIYHHTGLSDPFN-----PFELTNHAVLLVGYG--KDPVTG-- 394
Query: 194 QPYWIIKNSWGPHWGE 209
YWI+KNSWG WGE
Sbjct: 395 LDYWIVKNSWGSQWGE 410
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 29 SYATKEEYHKRLRIFRANLKKIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIIS- 87
S+A+ R+RI N + + + ++V C + GC GG F +I+
Sbjct: 236 SFASMGMLEARIRILTNNSQTPILSPQ------EVVSCSQYAQGCEGG-----FPYLIAG 284
Query: 88 --KLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVNVS-----SDETEMAKYLVKNG 140
GL E +PY G++ C + ++ R Y V +E M LV +G
Sbjct: 285 KYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHG 344
Query: 141 PMAVAINA-NAMQFYFGGVSHPLKFLCK-GGMDNLDHGVLIVGYGVHKTKFTHKIQPYWI 198
PMAVA + Y G+ H + +H VL+VGYG
Sbjct: 345 PMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSAS---------- 394
Query: 199 IKNSWGPHWGEKTMPFWIIKNSWGPRWGE 227
M +WI+KNSWG WGE
Sbjct: 395 ------------GMDYWIVKNSWGTGWGE 411
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 65 DCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEE-IRVKIQSYV 123
DC++ GC GG A + + + G+ + YPY+G R C ++ + +VK
Sbjct: 55 DCERRSYGCRGGFPLYALQYVANS---GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVG 111
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVG 181
V + + + P+++ + A A Q Y GG+ F G ++DH V VG
Sbjct: 112 RVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGI-----FAGPCGT-SIDHAVAAVG 165
Query: 182 YGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
YG Y +IKNSWG WGE
Sbjct: 166 YG----------NDYILIKNSWGTGWGE 183
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 136 LVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQ 194
++ G + I A N M + F G +K LC G D DH V IVGYG + K +
Sbjct: 164 VMNKGSVIAYIKAENVMGYEFSG--KKVKNLC--GDDTADHAVNIVGYGNYVNSEGEK-K 218
Query: 195 PYWIIKNSWGPHWGEK 210
YWI++NSWGP+WG++
Sbjct: 219 SYWIVRNSWGPYWGDE 234
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 136 LVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQ 194
++ G + I A N M + F G ++ LC G D DH V IVGYG + K +
Sbjct: 163 VMNKGSVIAYIKAENVMGYEFSG--KKVQNLC--GDDTADHAVNIVGYGNYVNSEGEK-K 217
Query: 195 PYWIIKNSWGPHWGEK 210
YWI++NSWGP+WG++
Sbjct: 218 SYWIVRNSWGPYWGDE 233
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNK-EEIRVKIQ 120
+LVDCD GC G S + + + G+ YPY + C N+ +VK
Sbjct: 52 ELVDCDLQSYGCNRGYQSTSLQYVAQN---GIHLRAKYPYIAKQQTCRANQVGGPKVKTN 108
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINANAMQF--YFGGVSHPLKFLCKGGMDNLDHGVL 178
V S+ + + P++V + + F Y GG+ + C +DH V
Sbjct: 109 GVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGI---FEGSCG---TKVDHAVT 162
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
V + Y +IKNSWGP WGE
Sbjct: 163 AV------GYGKSGGKGYILIKNSWGPGWGE 187
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 106 RACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANA-MQFYFGGVSHPLKF 164
+ CH + ++ Y ++S E MA+ + NGP++ I A + Y GG+ +
Sbjct: 151 KECHAIRNYTLWRVGDYGSLSGREKMMAE-IYANGPISCGIMATERLANYTGGIYAEYQ- 208
Query: 165 LCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
++H V + G+G+ YWI++NSWG WGE+
Sbjct: 209 ----DTTYINHVVSVAGWGISDGT------EYWIVRNSWGEPWGER 244
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 106 RACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANA-MQFYFGGVSHPLKF 164
+ CH + ++ Y ++S E MA+ + NGP++ I A + Y GG+ +
Sbjct: 116 KECHAIRNYTLWRVGDYGSLSGREKMMAE-IYANGPISCGIMATERLANYTGGIYAEYQ- 173
Query: 165 LCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
++H V + G+G+ YWI++NSWG WGE+
Sbjct: 174 ----DTTYINHVVSVAGWGISDGT------EYWIVRNSWGEPWGER 209
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 24/156 (15%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC GC G + E I G+ E+ YPY + C + I +
Sbjct: 62 ELVDCAS-QHGCHGDTIPRGIEYIQQN---GVVEERSYPYVAREQRCRRPNSQ-HYGISN 116
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAI-----NANAMQFYFGG--VSHPLKFLCKGGMDNLD 174
Y + + + + + A+A+ + A Q Y G + H G
Sbjct: 117 YCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQH------DNGYQPNY 170
Query: 175 HGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
H V IVGYG + + YWI++NSW WG+
Sbjct: 171 HAVNIVGYG------STQGDDYWIVRNSWDTTWGDS 200
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC++ GC GG A E + G+ YPYK C + + S
Sbjct: 52 ELVDCERRSHGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTS 108
Query: 122 YVN--VSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGV 177
V ++E + + K P++V + + Q Y GG+ + C +DH V
Sbjct: 109 GVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGI---FEGPCG---TKVDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V + Y +IKNSWG WGEK
Sbjct: 162 TAV------GYGKSGGKGYILIKNSWGTAWGEK 188
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 95 GEKDYPYKGSNRACHLN-----KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINA- 148
GE D P N+ C KE+ SY +V+++E E+ + KNGP+ A +
Sbjct: 73 GEGDTPK--CNKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVY 129
Query: 149 NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
+ Y GV + GG H + I+G+GV PYW++ NSW WG
Sbjct: 130 SDFLLYKSGVYQHVSGEIMGG-----HAIRILGWGVENG------TPYWLVGNSWNTDWG 178
Query: 209 EK 210
+
Sbjct: 179 DN 180
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 112 KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGM 170
KE+ SY +V+++E E+ + KNGP+ A + + Y GV + GG
Sbjct: 141 KEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGG- 198
Query: 171 DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
H + I+G+GV PYW++ NSW WG+
Sbjct: 199 ----HAIRILGWGVENGT------PYWLVANSWNTDWGD 227
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
+S NV +DE + K ++K GP+ Y G+ + GG H +
Sbjct: 150 KSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGG-----HAIR 204
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
I+G+GV PYW+I NSW WGE
Sbjct: 205 IIGWGVENK------APYWLIANSWNEDWGE 229
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 112 KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGM 170
KE+ SY +V+++E E+ + KNGP+ A + + Y GV + GG
Sbjct: 141 KEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGG- 198
Query: 171 DNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
H + I+G+GV PYW++ NSW WG+
Sbjct: 199 ----HAIRILGWGVENGT------PYWLVGNSWNTDWGD 227
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC++ GC GG A E + G+ YPYK C + + S
Sbjct: 52 ELVDCERRSHGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTS 108
Query: 122 YVN--VSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFLCKGGMDNLDHGV 177
V ++E + + K P++V + + Q Y GG+ + C ++H V
Sbjct: 109 GVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGI---FEGPCG---TKVEHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V + Y +IKNSWG WGEK
Sbjct: 162 TAV------GYGKSGGKGYILIKNSWGTAWGEK 188
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC++ GC GG A E + G+ YPYK C + + S
Sbjct: 158 ELVDCERRSHGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTS 214
Query: 122 YVN--VSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
V ++E + + K P++V + + F L KGG+ G +
Sbjct: 215 GVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQ----------LYKGGIFEGPCGTKV 263
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G + Y +IKNSWG WGEK
Sbjct: 264 DGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 16 VAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ +FN ++ HNK Y +E R IF+ NL I
Sbjct: 19 IQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID 54
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 95 GEKDYPYKGSNRACHLN-----KEEIRVKIQSYVNVSSDETEMAKYLVKNGPM--AVAIN 147
GE D P N+ C KE+ SY +VS E E+ + KNGP+ A +
Sbjct: 183 GEGDTPK--CNKMCEAGYSTSYKEDKHYGYTSY-SVSDSEKEIMAEIYKNGPVEGAFTVF 239
Query: 148 ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHW 207
++ + + G H + G H + I+G+G+ PYW++ NSW W
Sbjct: 240 SDFLTYKSGVYKHEAGDVMGG------HAIRILGWGIENGV------PYWLVANSWNADW 287
Query: 208 GEK 210
G+
Sbjct: 288 GDN 290
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 95 GEKDYPYKGSNRACHLN-----KEEIRVKIQSYVNVSSDETEMAKYLVKNGPM--AVAIN 147
GE D P N+ C KE+ SY +VS E E+ + KNGP+ A +
Sbjct: 127 GEGDTPK--CNKMCEAGYSTSYKEDKHYGYTSY-SVSDSEKEIMAEIYKNGPVEGAFTVF 183
Query: 148 ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHW 207
++ + + G H + G H + I+G+G+ PYW++ NSW W
Sbjct: 184 SDFLTYKSGVYKHEAGDVMGG------HAIRILGWGIENGV------PYWLVANSWNADW 231
Query: 208 GEK 210
G+
Sbjct: 232 GDN 234
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 95 GEKDYPYKGSNRACHLN-----KEEIRVKIQSYVNVSSDETEMAKYLVKNGPM--AVAIN 147
GE D P N+ C KE+ SY +VS E E+ + KNGP+ A +
Sbjct: 121 GEGDTPK--CNKMCEAGYSTSYKEDKHYGYTSY-SVSDSEKEIMAEIYKNGPVEGAFTVF 177
Query: 148 ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHW 207
++ + + G H + G H + I+G+G+ PYW++ NSW W
Sbjct: 178 SDFLTYKSGVYKHEAGDVMGG------HAIRILGWGIENGV------PYWLVANSWNADW 225
Query: 208 GEK 210
G+
Sbjct: 226 GDN 228
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 19/126 (15%)
Query: 29 SYATKEEYHKRLRIFRANLKKIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIIS- 87
S+A+ R+RI N + + + ++V C + GC GG F +I+
Sbjct: 30 SFASMGMLEARIRILTNNSQTPILSPQ------EVVSCSQYAQGCEGG-----FPYLIAG 78
Query: 88 --KLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVNVS-----SDETEMAKYLVKNG 140
GL E +PY G++ C + ++ R Y V +E M LV +G
Sbjct: 79 KYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHG 138
Query: 141 PMAVAI 146
PMAVA
Sbjct: 139 PMAVAF 144
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 215 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 269
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGE 209
GV PYW++ NSW WG+
Sbjct: 270 GVENGT------PYWLVANSWNTDWGD 290
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 158 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 212
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGE 209
GV PYW++ NSW WG+
Sbjct: 213 GVENGT------PYWLVANSWNTDWGD 233
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 154 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 208
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGE 209
GV PYW++ NSW WG+
Sbjct: 209 GVENGT------PYWLVANSWNTDWGD 229
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 153 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 207
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGE 209
GV PYW++ NSW WG+
Sbjct: 208 GVENGT------PYWLVANSWNTDWGD 228
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 152 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 206
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
GV PYW++ NSW WG+
Sbjct: 207 GVENGT------PYWLVANSWNTDWGDN 228
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 124 NVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+VS+ E ++ + KNGP+ A + + Y GV + GG H + I+G+
Sbjct: 103 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG-----HAIRILGW 157
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
GV PYW++ NSW WG+
Sbjct: 158 GVENGT------PYWLVANSWNTDWGDN 179
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 35.8 bits (81), Expect = 0.022, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 22/54 (40%)
Query: 174 DHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWGPRWGE 227
+H VL+VGYG M +WI+KNSWG WGE
Sbjct: 10 NHAVLLVGYGTDSAS----------------------GMDYWIVKNSWGTGWGE 41
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 108 CHLNKEEIRVKIQSYVNVSS----DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPL 162
C+ ++ + + +Y + +S E + + L GP VA + Y GV H +
Sbjct: 192 CNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHV 251
Query: 163 KFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
GG H V +VG+G T PYW I NSW WG
Sbjct: 252 SGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWG 286
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 108 CHLNKEEIRVKIQSYVNVSS----DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPL 162
C+ ++ + + +Y + +S E + + L GP VA + Y GV H +
Sbjct: 215 CNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHV 274
Query: 163 KFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
GG H V +VG+G T PYW I NSW WG
Sbjct: 275 SGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWG 309
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 108 CHLNKEEIRVKIQSYVNVSS----DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPL 162
C ++ + + +Y + +S E + + L GP VA + Y GV H +
Sbjct: 193 CDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHV 252
Query: 163 KFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWG 208
GG H V +VG+G T PYW I NSW WG
Sbjct: 253 SGQYLGG-----HAVRLVGWG------TSNGVPYWKIANSWNTEWG 287
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 53 RGEGTHLA-LKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN 111
R + LA +LVDC GC G + E I G+ E Y Y ++C
Sbjct: 131 RDQSLDLAEQELVDC-ASQHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCRRP 186
Query: 112 KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAI-----NANAMQFYFGGVSHPLKFLC 166
+ R I +Y + + + A+A+ + +A + Y G +
Sbjct: 187 NAQ-RFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDG---RTIIQRD 242
Query: 167 KGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGE 209
G N H V IVGY + YWI++NSW +WG+
Sbjct: 243 NGYQPNY-HAVNIVGYS------NAQGVDYWIVRNSWDTNWGD 278
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC GC G + E I G+ E Y Y ++C + R I +
Sbjct: 61 ELVDCAS-QHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCRRPNAQ-RFGISN 115
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAI-----NANAMQFYFGGVSHPLKFLCKGGMDNLDHG 176
Y + + + A+A+ + +A + Y G + G N H
Sbjct: 116 YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDG---RTIIQRDNGYQPNY-HA 171
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGY + YWI++NSW +WG+
Sbjct: 172 VNIVGYSNAQGV------DYWIVRNSWDTNWGDN 199
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 21/164 (12%)
Query: 53 RGEGTHLA-LKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN 111
R + LA +LVDC GC G + E I G+ E Y Y ++C
Sbjct: 51 RNQSLDLAEQELVDCAS-QHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCRRP 106
Query: 112 KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAI-----NANAMQFYFGGVSHPLKFLC 166
+ R I +Y + + + A+A+ + +A + Y G +
Sbjct: 107 NAQ-RFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDG---RTIIQRD 162
Query: 167 KGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G N H V IVGY + YWI++NSW +WG+
Sbjct: 163 NGYQPNY-HAVNIVGYSNAQGV------DYWIVRNSWDTNWGDN 199
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 62 KLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQS 121
+LVDC GC G + E I G+ E Y Y ++C + R I +
Sbjct: 61 ELVDCAS-QHGCHGDTIPRGIEYIQHN---GVVQESYYRYVAREQSCRRPNAQ-RFGISN 115
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAI-----NANAMQFYFGGVSHPLKFLCKGGMDNLDHG 176
Y + + + A+A+ + +A + Y G + G N H
Sbjct: 116 YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDG---RTIIQRDNGYQPNY-HA 171
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGY + YWI++NSW +WG+
Sbjct: 172 VNIVGYSNAQGV------DYWIVRNSWDTNWGDN 199
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 19 FNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQIRG-EGTHLALKL 63
F+ F + KSYAT+EE +R IF+ NL I +G +LK+
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKM 70
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 196 YWIIKNSWGPHWG 208
YW++KNSWG WG
Sbjct: 4 YWLVKNSWGEEWG 16
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,998,041
Number of Sequences: 62578
Number of extensions: 336211
Number of successful extensions: 1182
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 223
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)