RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1727
(240 letters)
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 217 bits (555), Expect = 8e-72
Identities = 71/148 (47%), Positives = 93/148 (62%), Gaps = 10/148 (6%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
L+DCDK+D C GGL SNA+ I + GGLE E DY Y+G ++C + E+ +V IQ
Sbjct: 53 LLDCDKMDKACMGGLPSNAYSAIKNL--GGLETEDDYSYQGHMQSCQFSAEKAKVYIQDS 110
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
V +S +E ++A +L K GP++VAINA MQFY G+S PL+ LC +DH VL+VGY
Sbjct: 111 VELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLC--SPWLIDHAVLLVGY 168
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G P+W IKNSWG WGEK
Sbjct: 169 GQRSDV------PFWAIKNSWGTDWGEK 190
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 210 bits (537), Expect = 4e-69
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYK---GSNRACHLNKEEIRVKI 119
LV CDK D+GC GGLM+NAFE I+ + G + E YPY G + C + + I
Sbjct: 53 LVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+V + DE ++A +L NGP+AVA++A++ Y GGV C + LDHGVL+
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVS--EQLDHGVLL 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGY PYWIIKNSW WGE+
Sbjct: 167 VGYNDSAAV------PYWIIKNSWTTQWGEE 191
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 187 bits (478), Expect = 5e-60
Identities = 53/152 (34%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
LVDC + + GC GGL S AFE I G+ GE YPYKG + C ++ ++
Sbjct: 54 LVDCAQNFNNHGCQGGLPSQAFEYIRYN--KGIMGEDTYPYKGQDDHCKFQPDKAIAFVK 111
Query: 121 SYVNVSS-DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
N++ DE M + + P++ A N Y G+ C D ++H VL
Sbjct: 112 DVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTS--CHKTPDKVNHAVL 169
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG PYWI+KNSWGP WG
Sbjct: 170 AVGYG------EENGIPYWIVKNSWGPQWGMN 195
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 185 bits (472), Expect = 8e-59
Identities = 50/155 (32%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
L+DC GC G +FE ++ GG+ E DYPYK + C N+ + +V I +Y
Sbjct: 54 LIDCVDESEGCYNGWHYQSFEWVVKH--GGIASEADYPYKARDGKCKANEIQDKVTIDNY 111
Query: 123 -------VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDH 175
+ S+ + V P++V+I+A FY GG+ C ++H
Sbjct: 112 GVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGN--C-SSPYGINH 168
Query: 176 GVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VLIVGYG YWI KNSWG WG
Sbjct: 169 FVLIVGYGSEDGV------DYWIAKNSWGEDWGID 197
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 185 bits (471), Expect = 1e-58
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKG-SNRACHLNKEEIRVKIQS 121
LVDC + GC GG ++NAF+ +I GGL + DYPY C+L + R I+S
Sbjct: 72 LVDCSVKNNGCYGGYITNAFDDMIDL--GGLCSQDDYPYVSNLPETCNLKRCNERYTIKS 129
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIV 180
YV++ + + + L GP++++I A + FY GG C +H V++V
Sbjct: 130 YVSI--PDDKFKEALRYLGPISISIAASDDFAFYRGGFYDG---ECG---AAPNHAVILV 181
Query: 181 GYGV----HKTKFTHKIQPYWIIKNSWGPHWGEK 210
GYG+ ++ + Y+IIKNSWG WGE
Sbjct: 182 GYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEG 215
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 182 bits (465), Expect = 8e-58
Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 16/154 (10%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGS-NRACHLNKEEIRVKIQS 121
LVDC + GC GGL++NAFE +I GG+ + DYPY C++++ + I++
Sbjct: 70 LVDCSFKNYGCNGGLINNAFEDMIEL--GGICPDGDYPYVSDAPNLCNIDRCTEKYGIKN 127
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIV 180
Y++V + ++ + L GP+++++ + FY G+ C D L+H V++V
Sbjct: 128 YLSV--PDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDG---ECG---DQLNHAVMLV 179
Query: 181 GYGV----HKTKFTHKIQPYWIIKNSWGPHWGEK 210
G+G+ + + Y+IIKNSWG WGE+
Sbjct: 180 GFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGER 213
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 180 bits (459), Expect = 3e-57
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
LVDC + GC GGLM AF+ + GGL+ E+ YPY+ + +C N +
Sbjct: 53 LVDCSGPQGNEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDT 110
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
+V++ E + K + GP++VAI+A + FY G+ C +++DHGVL
Sbjct: 111 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--C--SSEDMDHGVL 166
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+VGYG T+ + YW++KNSWG WG
Sbjct: 167 VVGYGFESTESDNN--KYWLVKNSWGEEWGMG 196
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 183 bits (466), Expect = 5e-57
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC GC GG M++AF + GG++ E YPY+ ++ CH + ++ ++ Y
Sbjct: 170 LVDCVPNALGCSGGWMNDAFTYVAQN--GGIDSEGAYPYEMADGNCHYDPNQVAARLSGY 227
Query: 123 VNVSS-DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIV 180
V +S DE +A + GP+AVA +A + Y GGV + C + H VLIV
Sbjct: 228 VYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPT--C--ETNKFTHAVLIV 283
Query: 181 GYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
GYG Q YW++KNSWG WG
Sbjct: 284 GYG------NENGQDYWLVKNSWGDGWGLD 307
Score = 51.9 bits (125), Expect = 4e-08
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ +F + +SY +E R +IF+ L+ +
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFE 54
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 172 bits (438), Expect = 4e-54
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYVQKN--RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 110
Query: 123 VNVSS-DETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A + QFY GV + C DNL+H VL
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES--C--NSDNLNHAVLA 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG+ K +WIIKNSWG +WG K
Sbjct: 167 VGYGIQKGN------KHWIIKNSWGENWGNK 191
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 174 bits (443), Expect = 1e-53
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
LVDC + GC GGLM AF+ + GGL+ E+ YPY+ + +C N +
Sbjct: 149 LVDCSGPQGNEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVANDA 206
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
+V++ E + K + GP++VAI+A + FY G+ C +++DHGVL
Sbjct: 207 GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--C--SSEDMDHGVL 262
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+VGYG T+ + YW++KNSWG WG
Sbjct: 263 VVGYGFESTESDNN--KYWLVKNSWGEEWGMG 292
Score = 47.2 bits (113), Expect = 1e-06
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
A + + HN+ Y EE R ++ N+K I+
Sbjct: 10 AQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIE 43
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 168 bits (429), Expect = 1e-52
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GC GG M+ AF+ I++ GG+ E+ YPY+G + C+ V I SY
Sbjct: 55 LVDCTTANHGCRGGWMNPAFQFIVNN--GGINSEETYPYRGQDGICNSTVNAPVVSIDSY 112
Query: 123 VNVSS-DETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
NV S +E + K V N P++V ++A Q Y G+ C + +H + +
Sbjct: 113 ENVPSHNEQSLQK-AVANQPVSVTMDAAGRDFQLYRSGIFTG---SCN---ISANHALTV 165
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG T + +WI+KNSWG +WGE
Sbjct: 166 VGYG------TENDKDFWIVKNSWGKNWGES 190
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 166 bits (423), Expect = 7e-52
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 26/153 (16%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR-VKIQS 121
L+DCD+ GC GG +A + + G+ YPY+G R C ++ K
Sbjct: 53 LLDCDRRSYGCNGGYPWSALQLVAQ---YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG 109
Query: 122 YVNVSS-DETEMAKYLVKNGPMAVAINAN--AMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
V +E + + N P++V + A Q Y GG+ P C + +DH V
Sbjct: 110 VRQVQPYNEGALLY-SIANQPVSVVLEAAGKDFQLYRGGIFVGP----CG---NKVDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG Y +IKNSWG WGE
Sbjct: 162 AAVGYG----------PNYILIKNSWGTGWGEN 184
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 166 bits (422), Expect = 9e-52
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 26/153 (16%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR-VKIQS 121
L+DC++ GC GG A + + + G+ + YPY+G R C ++ + VK
Sbjct: 53 LLDCERRSYGCRGGFPLYALQYVAN---SGIHLRQYYPYEGVQRQCRASQAKGPKVKTDG 109
Query: 122 YVNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
V ++E + + + P+++ + A A Q Y GG+ + P C ++DH V
Sbjct: 110 VGRVPRNNEQALIQ-RIAIQPVSIVVEAKGRAFQNYRGGIFAGP----CG---TSIDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG Y +IKNSWG WGE
Sbjct: 162 AAVGYG----------NDYILIKNSWGTGWGEG 184
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 165 bits (421), Expect = 2e-51
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRV-KIQS 121
LVDC++ GC GG A E + G+ YPYK C + + K
Sbjct: 53 LVDCERRSHGCKGGYPPYALEYVAK---NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSG 109
Query: 122 YVNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
V ++E + + P++V + + Q Y GG+ P C +DH V
Sbjct: 110 VGRVQPNNEGNLLN-AIAKQPVSVVVESKGRPFQLYKGGIFEGP----CG---TKVDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + Y +IKNSWG WGEK
Sbjct: 162 TAVGYG------KSGGKGYILIKNSWGTAWGEK 188
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 165 bits (420), Expect = 3e-51
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
L+DC + + C GG M++AF+ ++ GG+ E YPY + C E VKI
Sbjct: 59 LMDCSRAEGNQSCSGGEMNDAFQYVLDS--GGICSEDAYPYLARDEECRAQSCEKVVKIL 116
Query: 121 SYVNVSS-DETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ +V E M + P+++AI A QFY GV C +LDHGV
Sbjct: 117 GFKDVPRRSEAAMKA-ALAKSPVSIAIEADQMPFQFYHEGVFDA---SCG---TDLDHGV 169
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
L+VGYG K +WI+KNSWG WG
Sbjct: 170 LLVGYGTDKESKKD----FWIMKNSWGTGWGRD 198
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 164 bits (417), Expect = 5e-51
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 26/153 (16%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR-VKIQS 121
L+DC++ GC GG + + + ++ G+ E++YPY+ C ++ V I
Sbjct: 53 LLDCERRSHGCDGGYQTTSLQYVVD---NGVHTEREYPYEKKQGRCRAKDKKGPKVYITG 109
Query: 122 YVNV-SSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
Y V ++DE + + + N P++V ++ QFY GG+ P C N DH V
Sbjct: 110 YKYVPANDEISLIQ-AIANQPVSVVTDSRGRGFQFYKGGIYEGP----CG---TNTDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + Y ++KNSWGP+WGEK
Sbjct: 162 TAVGYG----------KTYLLLKNSWGPNWGEK 184
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 164 bits (417), Expect = 7e-51
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC GC G + E I G+ E Y Y ++C + I +Y
Sbjct: 62 LVDCAS-QHGCHGDTIPRGIEYIQH---NGVVQESYYRYVAREQSCRRPNAQR-FGISNY 116
Query: 123 VNV-SSDETEMAKYLVK-NGPMAVAINA---NAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ + ++ + L + + +AV I +A + Y G G H V
Sbjct: 117 CQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRD--N--GYQPNYHAV 172
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
IVGY + YWI++NSW +WG+
Sbjct: 173 NIVGYS------NAQGVDYWIVRNSWDTNWGDN 199
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 163 bits (416), Expect = 1e-50
Identities = 63/152 (41%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 63 LVDCDK-VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRV-KIQ 120
LVDCD + GC GGLM AFE I + GG+ E +YPY+ + C ++KE I
Sbjct: 54 LVDCDTDQNQGCNGGLMDYAFEFIKQR--GGITTEANYPYEAYDGTCDVSKENAPAVSID 111
Query: 121 SYVNVSSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
+ NV ++ V N P++VAI+A QFY GV C LDHGV
Sbjct: 112 GHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG---SCG---TELDHGVA 165
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
IVGYG T YW +KNSWGP WGEK
Sbjct: 166 IVGYGT-----TIDGTKYWTVKNSWGPEWGEK 192
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 163 bits (415), Expect = 1e-50
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 21/152 (13%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDCD GC GG M+NAF+ II+ GG++ +++YPY +C + + V I +
Sbjct: 53 LVDCDTASHGCNGGWMNNAFQYIITN--GGIDTQQNYPYSAVQGSCKPYRLRV-VSINGF 109
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGV-SHPLKFLCKGGMDNLDHGVL 178
V ++E+ + V + P++V + A Q Y G+ + P C +HGV+
Sbjct: 110 QRVTRNNESALQS-AVASQPVSVTVEAAGAPFQHYSSGIFTGP----CG---TAQNHGVV 161
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
IVGYG T + YWI++NSWG +WG +
Sbjct: 162 IVGYG------TQSGKNYWIVRNSWGQNWGNQ 187
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 163 bits (414), Expect = 2e-50
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
Query: 63 LVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKI 119
LVDC + GC GG M+ AF+ II G++ + YPYK ++ C + +
Sbjct: 54 LVDCSTEKYGNKGCNGGFMTTAFQYIIDN--KGIDSDASYPYKAMDQKCQYDSKYRAATC 111
Query: 120 QSYVNVSS-DETEMAKYLVKNGPMAVAINANAM--QFYFGGVSHPLKFLCKGGMDNLDHG 176
Y + E + + + GP++V ++A Y GV + C N++HG
Sbjct: 112 SKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS--CT---QNVNHG 166
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VL+VGYG K YW++KNSWG ++GE+
Sbjct: 167 VLVVGYGDLNGK------EYWLVKNSWGHNFGEE 194
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 165 bits (420), Expect = 2e-50
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 20/153 (13%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC GC G + E I G+ E Y Y ++C + I +Y
Sbjct: 142 LVDCAS-QHGCHGDTIPRGIEYIQH---NGVVQESYYRYVAREQSCRRPNAQR-FGISNY 196
Query: 123 VNV-SSDETEMAKYLVK-NGPMAVAINA---NAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+ + ++ + L + + +AV I +A + Y G G H V
Sbjct: 197 CQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRD--N--GYQPNYHAV 252
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
IVGY + YWI++NSW +WG+
Sbjct: 253 NIVGYS------NAQGVDYWIVRNSWDTNWGDN 279
Score = 53.4 bits (129), Expect = 1e-08
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 16 VAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ F + + NKSYAT E+ + F ++K +Q
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQ 40
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 163 bits (416), Expect = 3e-50
Identities = 60/155 (38%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 63 LVDCDKV-DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR----V 117
L+DCD + GC GGLM NAFE I + GGL E YPY+ + C++ + V
Sbjct: 56 LIDCDTADNDGCQGGLMDNAFEYIKNN--GGLITEAAYPYRAARGTCNVARAAQNSPVVV 113
Query: 118 KIQSYVNVSSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDH 175
I + +V ++ E V N P++VA+ A+ A FY GV C LDH
Sbjct: 114 HIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTG---ECG---TELDH 167
Query: 176 GVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
GV +VGYGV + YW +KNSWGP WGE+
Sbjct: 168 GVAVVGYGV-----AEDGKAYWTVKNSWGPSWGEQ 197
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 164 bits (418), Expect = 6e-50
Identities = 58/151 (38%), Positives = 80/151 (52%), Gaps = 15/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 152 LVDCVSENDGCGGGYMTNAFQYVQKN--RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 209
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
+ +E + + + + GP++VAI+A + QFY GV + C DNL+H VL
Sbjct: 210 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES--C--NSDNLNHAVLA 265
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG K +WIIKNSWG +WG K
Sbjct: 266 VGYG------IQKGNKHWIIKNSWGENWGNK 290
Score = 51.1 bits (123), Expect = 8e-08
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ + + H K Y K + R I+ NLK I
Sbjct: 9 THWELWKKTHRKQYNNKVDEISRRLIWEKNLKYIS 43
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 168 bits (426), Expect = 6e-50
Identities = 47/155 (30%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
+V C + GC GG GL E +PY G++ C + ++ R Y
Sbjct: 264 VVSCSQYAQGCEGGFPYLIAGKYAQD--FGLVEEACFPYTGTDSPCKMKEDCFRYYSSEY 321
Query: 123 VNVS-----SDETEMAKYLVKNGPMAVAINA-NAMQFYFGGV-SHPLKFLCKGGMDNLDH 175
V +E M LV +GPMAVA + Y G+ H + +H
Sbjct: 322 HYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNH 381
Query: 176 GVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VL+VGYG YWI+KNSWG WGE
Sbjct: 382 AVLLVGYGTDSASGM----DYWIVKNSWGTGWGEN 412
Score = 27.1 bits (60), Expect = 6.5
Identities = 2/28 (7%), Positives = 11/28 (39%)
Query: 24 EKHNKSYATKEEYHKRLRIFRANLKKIQ 51
N ++ + R+++ + ++
Sbjct: 125 VYVNTAHLKNSQEKYSNRLYKYDHNFVK 152
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 164 bits (417), Expect = 8e-50
Identities = 53/152 (34%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
LVDC + + GCGGGLM NA++ + GLE E YPY C NK+ K+
Sbjct: 144 LVDCSRPWGNNGCGGGLMENAYQYLKQ---FGLETESSYPYTAVEGQCRYNKQLGVAKVT 200
Query: 121 SYVNVSS-DETEMAKYLVKNGPMAVAINAN-AMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
+ V S E E+ + GP AVA++ Y G+ ++H VL
Sbjct: 201 GFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQS----QTCSPLRVNHAVL 256
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG YWI+KNSWG WGE+
Sbjct: 257 AVGYGTQGGT------DYWIVKNSWGLSWGER 282
Score = 47.6 bits (114), Expect = 1e-06
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+++ + +NK Y ++ R I+ N+K IQ
Sbjct: 3 DLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQ 36
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 159 bits (406), Expect = 3e-49
Identities = 56/153 (36%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIR-VKIQS 121
LVDCDK GC GG + + + + + G+ K YPY+ C + VKI
Sbjct: 53 LVDCDKHSYGCKGGYQTTSLQYVAN---NGVHTSKVYPYQAKQYKCRATDKPGPKVKITG 109
Query: 122 YVNV-SSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
Y V S+ ET + N P++V + A Q Y GV P C LDH V
Sbjct: 110 YKRVPSNCETSFLG-ALANQPLSVLVEAGGKPFQLYKSGVFDGP----CG---TKLDHAV 161
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG T + Y IIKNSWGP+WGEK
Sbjct: 162 TAVGYG------TSDGKNYIIIKNSWGPNWGEK 188
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 161 bits (410), Expect = 1e-48
Identities = 57/152 (37%), Positives = 81/152 (53%), Gaps = 17/152 (11%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQ 120
L+DC +AGC GG M +AF I G+ E YPY+ C + + +
Sbjct: 167 LIDCSSSYGNAGCDGGWMDSAFSYIHD---YGIMSESAYPYEAQGDYCRFDSSQSVTTLS 223
Query: 121 SYVNVSS-DETEMAKYLVKNGPMAVAINA-NAMQFYFGGVSHPLKFLCKGGMDNLDHGVL 178
Y ++ S DE +A + + GP+AVAI+A + +QFY GG+ + C +L+HGVL
Sbjct: 224 GYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQT--C--NQSDLNHGVL 279
Query: 179 IVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+VGYG + Q YWI+KNSWG WGE
Sbjct: 280 VVGYG------SDNGQDYWILKNSWGSGWGES 305
Score = 51.1 bits (123), Expect = 7e-08
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
++ F H KSY++ E +R IF+ N+ KI
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIA 59
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 158 bits (401), Expect = 2e-48
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 23/155 (14%)
Query: 63 LVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRV-KI 119
LVDC + GC GG M++ F+ II+ GG+ E +YPY C+L+ ++ + I
Sbjct: 53 LVDCGRTQNTRGCDGGFMTDGFQFIINN--GGINTEANYPYTAEEGQCNLDLQQEKYVSI 110
Query: 120 QSYVNV-SSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGV-SHPLKFLCKGGMDNLDH 175
+Y NV ++E + V P++VA+ A Q Y G+ + P C +DH
Sbjct: 111 DTYENVPYNNEWALQT-AVAYQPVSVALEAAGYNFQHYSSGIFTGP----CG---TAVDH 162
Query: 176 GVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
V IVGYG T YWI+KNSWG WGE+
Sbjct: 163 AVTIVGYG------TEGGIDYWIVKNSWGTTWGEE 191
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 159 bits (403), Expect = 3e-48
Identities = 47/180 (26%), Positives = 64/180 (35%), Gaps = 39/180 (21%)
Query: 63 LVDCDKV--DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKG----------------- 103
+ +C K C G F II G L E +YPY
Sbjct: 62 VANCYKGEHKDRCDEGSSPMEFLQIIED-YGFLPAESNYPYNYVKVGEQCPKVEDHWMNL 120
Query: 104 -SNRACHLNKEEIR-VKIQSYVNVSS---------DETEMAKYLVKNGPMAVAINANAMQ 152
N NK E + + Y S + ++ G + I A +
Sbjct: 121 WDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVM 180
Query: 153 FYF--GGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
Y G L C G D DH V IVGYG + K + YWI++NSWGP+WG++
Sbjct: 181 GYEFSGKKVKNL---C--GDDTADHAVNIVGYGNYVNSEGEK-KSYWIVRNSWGPYWGDE 234
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 159 bits (404), Expect = 7e-48
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
Query: 63 LVDCDKV---DAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKI 119
LVDC + GC GG M+ AF+ II G++ + YPYK ++ C + +
Sbjct: 151 LVDCSTEKYGNKGCNGGFMTTAFQYIIDN--KGIDSDASYPYKAMDQKCQYDSKYRAATC 208
Query: 120 QSYVNVSS-DETEMAKYLVKNGPMAVAINANAM--QFYFGGVSHPLKFLCKGGMDNLDHG 176
Y + E + + + GP++V ++A Y GV + C N++HG
Sbjct: 209 SKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPS--CT---QNVNHG 263
Query: 177 VLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VL+VGYG + YW++KNSWG ++GE+
Sbjct: 264 VLVVGYG------DLNGKEYWLVKNSWGHNFGEE 291
Score = 50.7 bits (122), Expect = 9e-08
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
++ + + + K Y K E R I+ NLK +
Sbjct: 10 HHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVM 44
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 157 bits (398), Expect = 8e-47
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 22/153 (14%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRV-KIQS 121
LVDC++ GC GG A E + G+ YPYK C + + K
Sbjct: 159 LVDCERRSHGCKGGYPPYALEYVAK---NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSG 215
Query: 122 YVNV-SSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGV-SHPLKFLCKGGMDNLDHGV 177
V ++E + + P++V + + Q Y GG+ P C +D V
Sbjct: 216 VGRVQPNNEGNLLN-AIAKQPVSVVVESKGRPFQLYKGGIFEGP----CG---TKVDGAV 267
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + Y +IKNSWG WGEK
Sbjct: 268 TAVGYG------KSGGKGYILIKNSWGTAWGEK 294
Score = 51.5 bits (124), Expect = 5e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 EHVAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ +FN ++ HNK Y +E R IF+ NL I
Sbjct: 17 RLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID 54
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 148 bits (377), Expect = 4e-45
Identities = 53/150 (35%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDCDK + GC GG A++ II+ GG++ + +YPYK C + V I Y
Sbjct: 53 LVDCDKKNHGCLGGAFVFAYQYIINN--GGIDTQANYPYKAVQGPCQAASKV--VSIDGY 108
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINAN--AMQFYFGGVSHPLKFLCKGGMDNLDHGVLIV 180
V K V P VAI+A+ Q Y G+ L+HGV IV
Sbjct: 109 NGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG------PCGTKLNHGVTIV 162
Query: 181 GYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
GY YWI++NSWG +WGEK
Sbjct: 163 GYQ----------ANYWIVRNSWGRYWGEK 182
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 131 bits (331), Expect = 2e-37
Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 34/165 (20%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEI------- 115
++DC C GG + ++ G+ E Y+ ++ C +
Sbjct: 97 VIDCGNAG-SCEGGNDLSVWDYAHQH---GIPDETCNNYQAKDQECDKFNQCGTCNEFKE 152
Query: 116 --------RVKIQSYVNVSSDETEMAKYLVKNGPMAVAINA-NAMQFYFGGV-SHPLKFL 165
++ Y ++S E MA+ + NGP++ I A + Y GG+ +
Sbjct: 153 CHAIRNYTLWRVGDYGSLSGREKMMAE-IYANGPISCGIMATERLANYTGGIYAEY---- 207
Query: 166 CKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
++H V + G+G+ YWI++NSWG WGE+
Sbjct: 208 --QDTTYINHVVSVAGWGISDGT------EYWIVRNSWGEPWGER 244
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 128 bits (323), Expect = 4e-36
Identities = 33/169 (19%), Positives = 51/169 (30%), Gaps = 33/169 (19%)
Query: 63 LVDCDKVD--AGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEI----- 115
+ K++ G M ++ K G+ EK++PY + +
Sbjct: 108 YYNERKIEGHVNYDSGAMIRDGIKVLHK--LGVCPEKEWPYGDTPADPRTEEFPPGAPAS 165
Query: 116 ------------RVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHP 161
KI Y V+ D + L P + + V P
Sbjct: 166 KKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP 225
Query: 162 LKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
L K H VL VGY ++ I+NSWG + GE
Sbjct: 226 LP--TKNDTLEGGHAVLCVGYD--------DEIRHFRIRNSWGNNVGED 264
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 126 bits (317), Expect = 6e-36
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
+VDCD GG +AF +I+ GG+ + +YPY G + C LNK I +I Y
Sbjct: 53 IVDCDTXXXXXXGGDADDAFRWVITN--GGIASDANYPYTGVDGTCDLNKP-IAARIDGY 109
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINANAMQFYF---GGVSHPLKFLCKGGMDNLDHGVLI 179
NV + + + V P++V I ++ F G+ C +DH VLI
Sbjct: 110 TNVPNSSSALLD-AVAKQPVSVNIYTSSTSFQLYTGPGIFAGSS--CSDDPATVDHTVLI 166
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + T YWI+KNSWG WG
Sbjct: 167 VGYGSNGTN-----ADYWIVKNSWGTEWGID 192
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 113 bits (284), Expect = 9e-31
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 49/193 (25%)
Query: 63 LVDCDKV-DAGCGGGLMSNAFETIISKLGGGLEGE--------KDYPYKGSNRACHLNK- 112
L+ C + GC GG++ A++ + + G + G + YP+
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVKE--GIVTGSSKENHAGCEPYPFPKCEHHTKGKYP 118
Query: 113 ------------------------EEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINA 148
+ + + +S NV +DE + K ++K GP+
Sbjct: 119 PCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTV 178
Query: 149 -NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHW 207
Y G+ + G H + I+G+GV PYW+I NSW W
Sbjct: 179 YEDFLNYKSGI-----YKHITGETLGGHAIRIIGWGVENK------APYWLIANSWNEDW 227
Query: 208 GEKTMPFWIIKNS 220
GE F I++
Sbjct: 228 GENGY-FRIVRGR 239
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 114 bits (288), Expect = 1e-30
Identities = 42/186 (22%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 63 LVDCD-KVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKG------------------ 103
L+ C GC GG A+ S GL + PY
Sbjct: 129 LLACCSDCGDGCNGGDPDRAWAYFSST---GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQ 185
Query: 104 ---SNRACHLNKEEIRVKIQSYVNVS----SDETEMAKYLVKNGPMAVAINA-NAMQFYF 155
C ++ + + +Y + + E + + L GP VA + Y
Sbjct: 186 FNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYN 245
Query: 156 GGV-SHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPF 214
GV H G H V +VG+G PYW I NSW WG F
Sbjct: 246 SGVYHHV------SGQYLGGHAVRLVGWGTSNG------VPYWKIANSWNTEWGMDGY-F 292
Query: 215 WIIKNS 220
I + S
Sbjct: 293 LIRRGS 298
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 112 bits (282), Expect = 2e-30
Identities = 46/218 (21%), Positives = 73/218 (33%), Gaps = 59/218 (27%)
Query: 41 RIFRANLKKIQIRGEGTHL-ALKLVDC--DKVDAGCGGGLMSNAFETIISKLGGGLEGEK 97
RI + + + A L+ C GC GG + A+ K GL
Sbjct: 47 RICIHTNAHVSV-----EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK---GLVSGG 98
Query: 98 DY-------PYKGSNRACHLNK--------------------------EEIRVKIQSYVN 124
Y PY H+N ++ + + +
Sbjct: 99 LYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYS 158
Query: 125 VSSDETEMAKYLVKNGPMAVAINANA-MQFYFGGV-SHPLKFLCKGGMDNLDHGVLIVGY 182
VS+ E ++ + KNGP+ A + + Y GV H G H + I+G+
Sbjct: 159 VSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV------TGEMMGGHAIRILGW 212
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
GV PYW++ NSW WG+ F I++
Sbjct: 213 GVENG------TPYWLVANSWNTDWGDNGF-FKILRGQ 243
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 109 bits (275), Expect = 7e-29
Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 53/195 (27%)
Query: 63 LVDC--DKVDAGCGGGLMSNAFETIISKLGGGLEGEKDY-------PYKGSNRACHLNK- 112
L+ C GC GG + A+ K GL Y PY H+N
Sbjct: 122 LLTCCGSMCGDGCNGGYPAEAWNFWTRK---GLVSGGLYESHVGCRPYSIPPCEHHVNGS 178
Query: 113 -------------------------EEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
++ + + +VS+ E ++ + KNGP+ A +
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 148 ANA-MQFYFGGV-SHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGP 205
+ Y GV H G H + I+G+GV PYW++ NSW
Sbjct: 239 VYSDFLLYKSGVYQHV------TGEMMGGHAIRILGWGVENG------TPYWLVANSWNT 286
Query: 206 HWGEKTMPFWIIKNS 220
WG+ F I++
Sbjct: 287 DWGDNGF-FKILRGQ 300
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics
of pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 51.3 bits (123), Expect = 7e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 3 ATAKPHHHDKLEHVAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ + F+ F + KSYAT+EE +R IF+ NL I
Sbjct: 11 GSIWEWKEAHFQD--AFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIH 57
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic
disorder P like protein, hydrolase; NMR {Drosophila
melanogaster}
Length = 80
Score = 42.3 bits (100), Expect = 6e-06
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 19 FNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ + K +K+Y +E+ R RI+ + +I+
Sbjct: 10 WVEYKSKFDKNYEAEEDLM-RRRIYAESKARIE 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 2e-04
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 112 KEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINAN 149
K+ ++ K+Q+ + Y + P A+AI A
Sbjct: 19 KQALK-KLQA---------SLKLYADDSAP-ALAIKAT 45
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 37.9 bits (87), Expect = 0.002
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 173 LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSW 221
DHG+ I G + Y+++KNSWG + W ++
Sbjct: 316 DDHGMQIYGIAKDQEG-----NEYYMVKNSWGTNSKYNG--IWYASKAF 357
Score = 28.7 bits (63), Expect = 1.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 209 EKTMPFWIIKNSWGPRWGEQ 228
++ ++++KNSWG
Sbjct: 329 QEGNEYYMVKNSWGTNSKYN 348
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 33.6 bits (76), Expect = 0.049
Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 24/143 (16%)
Query: 98 DYPYKGSNRACHLNKEEIRV--KIQSYVNVSSDE-TEMAKYLVKNG-PMAVAINANAMQF 153
+ P + +++ + Y+NV ++ +++ ++N + +
Sbjct: 277 NDPRHPYGKLIKIDRLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMD 336
Query: 154 YFGGVSHPLKFLCKG---------------GMDNLDHGVLIVGYGVHKTKFTHKIQPYWI 198
GV + + +LI G V +T K+ +
Sbjct: 337 KKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHVDET---SKLPLRYR 393
Query: 199 IKNSWGPHWGEKTMPFWIIKNSW 221
++NSWG G+ +++ +
Sbjct: 394 VENSWGKDSGKDG--LYVMTQKY 414
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.0 bits (72), Expect = 0.12
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 92 GLEG---EKDYPYKGSNRACHLNKEEI---RVKIQSYVNVSSDETEMAKYLV 137
G G + +Y + + + + ++I S + +S + + K+LV
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLV 165
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 31.3 bits (70), Expect = 0.27
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 23/121 (19%)
Query: 120 QSYVNVSSDE-TEMAKYLVKNG-PMAVAINANAMQFYFGGVSHPLKFLCKGGMDN----- 172
Y N D +M +K+G + + G+S + +
Sbjct: 297 TLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNM 356
Query: 173 ------------LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
+ H + V + W ++NSWG G K + + +
Sbjct: 357 NKAERLTFGESLMTHAMTFTA--VSEKDDQDGAFTKWRVENSWGEDHGHKG--YLCMTDE 412
Query: 221 W 221
W
Sbjct: 413 W 413
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 0.77
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 76 GLMSNAF------ETIISKLGGGLEGEKDYP-YKGSNRACHLNKEEIRVKIQSYVNVSSD 128
GL++ +++ L GGL+ + + R + E+R + +
Sbjct: 708 GLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHK 767
Query: 129 ETEMAKYLVKNGPMAVAINANAMQFYF------GGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+ + AN +Q F V +G +D L+ +++ G+
Sbjct: 768 VVNGNSADAAYAQVEIQPRAN-IQLDFPELKPYKQVKQIAPAELEGLLD-LERVIVVTGF 825
Query: 183 G 183
Sbjct: 826 A 826
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.3
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 48/134 (35%)
Query: 4 TAKPHHHDKLEHVA-MFNHFLEKHNKSYATKEEYHKRLRI--FR----ANLKKIQIRGEG 56
+ P H L + + N L K+N S+ K+ ++I + ++L R
Sbjct: 424 AS-PFHSHLLVPASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDGSDL-----RVLS 472
Query: 57 THLALKLVDC--------DK---------VDAGCG-----GGLMSNAFE----TIISKLG 90
++ ++VDC + +D G G G L + +I +
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI--VA 530
Query: 91 GGLEG--EKDYPYK 102
G L+ + DY +K
Sbjct: 531 GTLDINPDDDYGFK 544
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 27.7 bits (62), Expect = 3.4
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 110 LNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
L++ +IR + + VN S+ ++ L MA+ +
Sbjct: 43 LSEADIRGFVAAVVNGSAQGAQIGAML-----MAIRLR 75
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 110 LNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
L KEEI ++ Y N + +M+ MA+
Sbjct: 16 LTKEEIEWIVRGYTNGDIPDYQMSALA-----MAIYFR 48
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 27.6 bits (62), Expect = 3.9
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 110 LNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
L EEI I YV + + + MA+
Sbjct: 19 LTTEEINFFIGGYVKGDIPDYQASSLA-----MAIYFQ 51
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 27.7 bits (62), Expect = 4.0
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 110 LNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
+E++ + Y+ + +++ +L MA +
Sbjct: 16 HRREDLEAFLLGYLRDEVPDYQVSAWL-----MAAFLR 48
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 110 LNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAIN 147
L+ EEIR I + + E ++A M + +
Sbjct: 17 LSDEEIRFFINGIRDNTISEGQIAALA-----MTIFFH 49
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 26.7 bits (59), Expect = 5.4
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 57 THLALKLVDCDKV-DAGCGGGLMS 79
L+L + GC G +
Sbjct: 43 LRLSLSSGAVSNGLEIGCAAGAFT 66
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X
chromosome, MSL complex; 3.00A {Homo sapiens}
Length = 211
Score = 26.7 bits (58), Expect = 6.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 13 LEHVAMFNHFLEKHNKSYATKEEY 36
L+H +F FL +++ + + Y
Sbjct: 174 LKHFDLFLRFLAEYHDDFFPESAY 197
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene
regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Length = 181
Score = 26.5 bits (58), Expect = 6.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 13 LEHVAMFNHFLEKHNKSYATKEEY 36
L ++ F +L K++ + + +Y
Sbjct: 138 LNYLHDFLKYLAKNSATLFSASDY 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,739,321
Number of extensions: 216338
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 73
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)