RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1727
(240 letters)
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 95.1 bits (235), Expect = 8e-24
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 60 ALKLVDCDK--VDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRV 117
LVDC + GC GGLM AF+ + GGL+ E+ YPY+ + +C N +
Sbjct: 146 EQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN--GGLDSEESYPYEATEESCKYNPKYSVA 203
Query: 118 KIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGV 177
+V++ E + K + GP++VAI+A F F + C +++DHGV
Sbjct: 204 NDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGV 261
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWG 222
L+VGYG T+ + YW++KNSWG WG + K+
Sbjct: 262 LVVGYGFESTESDNN--KYWLVKNSWGEEWGMGGY-VKMAKDRRN 303
Score = 41.9 bits (97), Expect = 3e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 17 AMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
A + + HN+ Y EE R ++ N+K I+
Sbjct: 10 AQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIE 43
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 214
Score = 89.2 bits (220), Expect = 2e-22
Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 11/157 (7%)
Query: 64 VDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYV 123
+DCDK+D C GGL SNA+ I + GGLE E DY Y+G ++C + E+ +V IQ V
Sbjct: 54 LDCDKMDKACMGGLPSNAYSAIKNL--GGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSV 111
Query: 124 NVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYG 183
+S +E ++A +L K GP++VAINA MQFY G+S P +DH VL+VGYG
Sbjct: 112 ELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRP--LRPLCSPWLIDHAVLLVGYG 169
Query: 184 VHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
P+W IKNSWG WGEK +++ + S
Sbjct: 170 ------QRSDVPFWAIKNSWGTDWGEKGY-YYLHRGS 199
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
rhizome (Zingiber officinale) [TaxId: 94328]}
Length = 216
Score = 81.6 bits (200), Expect = 2e-19
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRAC 108
+I + +LVDC + GC GG M+ AF+ I++ GG+ E+ YPY+G + C
Sbjct: 39 QIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNN--GGINSEETYPYRGQDGIC 96
Query: 109 HLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKG 168
+ V I SY NV S + + V N P++V ++A F
Sbjct: 97 NSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNIS 156
Query: 169 GMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+H + +VGYG K +WI+KNSWG +WGE
Sbjct: 157 A----NHALTVVGYGTENDK------DFWIVKNSWGKNWGES 188
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
[TaxId: 9606]}
Length = 217
Score = 80.0 bits (196), Expect = 6e-19
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 66 CDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVNV 125
+ GC GG M+ AF+ II G++ + YPYK ++ C + + Y +
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDN--KGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTEL 116
Query: 126 SSD-ETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGV 184
E + + + GP++V ++A F+ + C N++HGVL+VGYG
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT---QNVNHGVLVVGYGD 173
Query: 185 HKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWG 222
K YW++KNSWG ++GE+ + +N
Sbjct: 174 LNGK------EYWLVKNSWGHNFGEEGY-IRMARNKGN 204
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
9823]}
Length = 228
Score = 76.5 bits (187), Expect = 1e-17
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 67 DKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVN-V 125
+ + GC GGL S AFE I G+ GE YPYKG + C ++ ++ N
Sbjct: 68 NFNNHGCQGGLPSQAFEYIRYN--KGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANIT 125
Query: 126 SSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVH 185
+DE M + + P++ A + + C D ++H VL VGYG
Sbjct: 126 MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYS-STSCHKTPDKVNHAVLAVGYG-- 182
Query: 186 KTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
PYWI+KNSWGP WG F I +
Sbjct: 183 ----EENGIPYWIVKNSWGPQWGMNGY-FLIERGK 212
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 75.4 bits (184), Expect = 3e-17
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GCGGG M+NAF+ + G++ E YPY G +C N K + Y
Sbjct: 53 LVDCVSENDGCGGGYMTNAFQYVQKN--RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGY 110
Query: 123 VNV-SSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVG 181
+ +E + + + + GP++VAI+A+ F F C DNL+H VL VG
Sbjct: 111 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESC--NSDNLNHAVLAVG 168
Query: 182 YGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWG 222
YG+ K +WIIKNSWG +WG K + +N
Sbjct: 169 YGIQKGN------KHWIIKNSWGENWGNKGY-ILMARNKNN 202
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 75.4 bits (184), Expect = 3e-17
Identities = 54/165 (32%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRAC 108
KI +LVDCDK GC GG + + + + + K YPY+ C
Sbjct: 39 KIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGV---HTSKVYPYQAKQYKC 95
Query: 109 HL-NKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANA--MQFYFGGVSHPLKFL 165
+K +VKI Y V S+ + N P++V + A Q Y GV
Sbjct: 96 RATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPC-- 153
Query: 166 CKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
LDH V VGYG K Y IIKNSWGP+WGEK
Sbjct: 154 ----GTKLDHAVTAVGYGTSDGK------NYIIIKNSWGPNWGEK 188
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 74.6 bits (182), Expect = 5e-17
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRAC 108
+I+ + +LVDCDK + GC GG A++ II+ GG++ + +YPYK C
Sbjct: 39 QIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINN--GGIDTQANYPYKAVQGPC 96
Query: 109 HLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKG 168
+ + + Y V K V P VAI+A++ QF
Sbjct: 97 QAASKVVSID--GYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGP 150
Query: 169 GMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
L+HGV IVGY YWI++NSWG +WGEK
Sbjct: 151 CGTKLNHGVTIVGY----------QANYWIVRNSWGRYWGEK 182
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId:
9606]}
Length = 221
Score = 73.5 bits (179), Expect = 2e-16
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 66 CDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY-VN 124
+ + GC GG M+ AF+ + GGL+ E+ YPY + C E + + V
Sbjct: 58 RPQGNQGCNGGFMARAFQYVKEN--GGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVV 115
Query: 125 VSSDETEMAKYLVKNGPMAVAINA--NAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
E + K + GP++VA++A ++ QFY G+ K ++
Sbjct: 116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG------VLVV 169
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWG 222
G YW++KNSWGP WG I K+
Sbjct: 170 GYGFEGANSDNSKYWLVKNSWGPEWGSNGY-VKIAKDKNN 208
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 254
Score = 73.8 bits (180), Expect = 2e-16
Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 41/190 (21%)
Query: 61 LKLVDCDKVDAGCGGGLMSNAFETIISK----LGGGLEGEKDYPYKGSNRACHLNK---- 112
L GC GG + A+ K G PY H+N
Sbjct: 60 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 119
Query: 113 ----------------------EEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANA 150
++ + + +VS+ E ++ + KNGP+ A + +
Sbjct: 120 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 179
Query: 151 MQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+ + G H + I+G+GV PYW++ NSW WG+
Sbjct: 180 DFLLYKSGVYQHVTGEMMGG----HAIRILGWGVENGT------PYWLVANSWNTDWGDN 229
Query: 211 TMPFWIIKNS 220
F I++
Sbjct: 230 GF-FKILRGQ 238
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia
coronaria) [TaxId: 52861]}
Length = 215
Score = 72.4 bits (176), Expect = 4e-16
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRAC 108
KI+ + +LVDCD GC GG M+NAF+ II+ GG++ +++YPY +C
Sbjct: 39 KIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITN--GGIDTQQNYPYSAVQGSC 96
Query: 109 HLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKG 168
+ + V I + V+ + + V + P++V + A F
Sbjct: 97 KPYRLRV-VSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIF----TGP 151
Query: 169 GMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKN 219
+HGV+IVGYG K YWI++NSWG +WG + W+ +N
Sbjct: 152 CGTAQNHGVVIVGYGTQSGK------NYWIVRNSWGQNWGNQGY-IWMERN 195
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
(Ricinus communis) [TaxId: 3988]}
Length = 224
Score = 71.9 bits (175), Expect = 7e-16
Identities = 60/164 (36%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAG-CGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRA 107
+I+ + +LVDCD C GGLM AFE I + GG+ E +YPY+ +
Sbjct: 40 QIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR--GGITTEANYPYEAYDGT 97
Query: 108 CHLNKEEIR-VKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLC 166
C ++KE V I + NV ++ V N P++VAI+A F F
Sbjct: 98 CDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVF----T 153
Query: 167 KGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
LDHGV IVGYG T YW +KNSWGP WGEK
Sbjct: 154 GSCGTELDHGVAIVGYGT-----TIDGTKYWTVKNSWGPEWGEK 192
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
Length = 215
Score = 71.2 bits (173), Expect = 1e-15
Identities = 63/175 (36%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRAC 108
+ LV CDK D+GC GGLM+NAFE I+ + G + E YPY
Sbjct: 39 FLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGIS 98
Query: 109 HLNKEE---IRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFL 165
+ I +V + DE ++A +L NGP+AVA++A++ Y GGV
Sbjct: 99 PPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS---- 154
Query: 166 CKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
+ LDHGVL+VGY PYWIIKNSW WGE+ I K S
Sbjct: 155 --CVSEQLDHGVLLVGYNDSAAV------PYWIIKNSWTTQWGEEGY-IRIAKGS 200
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
9606]}
Length = 275
Score = 70.1 bits (170), Expect = 7e-15
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 99 YPYKGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGV 158
+ CH + ++ Y ++S E +M + NGP++ I A + G
Sbjct: 142 CGTCNEFKECHAIRNYTLWRVGDYGSLSGRE-KMMAEIYANGPISCGIMATERLANYTGG 200
Query: 159 SHPLKFLCKGGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+ ++H V + G+G+ YWI++NSWG WGE+
Sbjct: 201 IYA----EYQDTTYINHVVSVAGWGISDGT------EYWIVRNSWGEPWGER 242
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit
(Actinidia chinensis) [TaxId: 3625]}
Length = 218
Score = 67.0 bits (162), Expect = 4e-14
Identities = 45/175 (25%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 49 KIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGS-NRA 107
KI + +L+DC + G GG+ E++YPY
Sbjct: 39 KIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGEC 98
Query: 108 CHLNKEEIRVKIQSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCK 167
+ E V I +Y NV + + V P++VA++A F
Sbjct: 99 NVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIF----TG 154
Query: 168 GGMDNLDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWG 222
+DH V IVGYG YWI+KNSW WGE+ I++N G
Sbjct: 155 PCGTAIDHAVTIVGYGTEGGI------DYWIVKNSWDTTWGEEGY-MRILRNVGG 202
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 67.3 bits (163), Expect = 4e-14
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 120 QSYVNVSSDETEMAKYLVKNGPMAVAINANAMQFYF--GGVSHPLKFLCKGGMDNLDHGV 177
+E M LV +GPMAVA ++ G H + +H V
Sbjct: 118 VGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAV 177
Query: 178 LIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNS 220
L+VGYG + YWI+KNSWG WGE F I + +
Sbjct: 178 LLVGYGTD----SASGMDYWIVKNSWGTGWGENGY-FRIRRGT 215
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 67.8 bits (164), Expect = 4e-14
Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 10/148 (6%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC G + G+ E Y Y ++C +
Sbjct: 139 LVDCASQHGCHGDTIPRGIEYIQH----NGVVQESYYRYVAREQSCRRPNAQRFGISNYC 194
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+ ++ + L + I F G H V IVGY
Sbjct: 195 QIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY 254
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
+ YWI++NSW +WG+
Sbjct: 255 SNAQGV------DYWIVRNSWDTNWGDN 276
Score = 47.7 bits (112), Expect = 4e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 16 VAMFNHFLEKHNKSYATKEEYHKRLRIFRANLKKIQ 51
+ F + + NKSYAT E+ + F ++K +Q
Sbjct: 2 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQ 37
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
[TaxId: 5833]}
Length = 241
Score = 66.9 bits (162), Expect = 6e-14
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSY 122
LVDC + GC GGL++NAFE +I G + S+ N + K
Sbjct: 70 LVDCSFKNYGCNGGLINNAFEDMIELGGICPD---GDYPYVSDAPNLCNIDRCTEKYGIK 126
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
+S + ++ + L GP+++++ + ++ D L+H V++VG+
Sbjct: 127 NYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFD-----GECGDQLNHAVMLVGF 181
Query: 183 G----VHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWGP 223
G V+ + Y+IIKNSWG WGE+ I + G
Sbjct: 182 GMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF-INIETDESGL 225
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Length = 212
Score = 62.8 bits (151), Expect = 1e-12
Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 64 VDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN-KEEIRVKIQSY 122
+DCD+ GC GG +A + + YPY+G R C K K
Sbjct: 54 LDCDRRSYGCNGGYPWSALQLVAQYGI---HYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 123 VNVSSDETEMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLIVGY 182
V Y + N P++V + A F + +DH V VGY
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIF----VGPCGNKVDHAVAAVGY 166
Query: 183 GVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
G Y +IKNSWG WGE
Sbjct: 167 G----------PNYILIKNSWGTGWGEN 184
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
papaya) [TaxId: 3649]}
Length = 216
Score = 60.8 bits (146), Expect = 7e-12
Identities = 43/151 (28%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 63 LVDCDKVDAGCGGGLMSNAFETIISKLGGGLEGEKDYPYKGSNRACHLN-KEEIRVKIQS 121
LVDC++ GC GG A E + G+ YPYK C VK
Sbjct: 53 LVDCERRSHGCKGGYPPYALEYVAKN---GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSG 109
Query: 122 YVNVSSDETEMAKYLVKNGPMAVAIN--ANAMQFYFGGVSHPLKFLCKGGMDNLDHGVLI 179
V + + P++V + Q Y GG+ +DH V
Sbjct: 110 VGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPC------GTKVDHAVTA 163
Query: 180 VGYGVHKTKFTHKIQPYWIIKNSWGPHWGEK 210
VGYG + Y +IKNSWG WGEK
Sbjct: 164 VGYG------KSGGKGYILIKNSWGTAWGEK 188
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 50.0 bits (119), Expect = 7e-08
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 118 KIQSYVNVSSDE-TEMAKYLVKNGPMAVAINANAMQFY-------------FGGVSHPLK 163
Y+NV ++ +++ ++N AV ++ +F + + + L
Sbjct: 300 DAVIYLNVDNETLSKLVVKRLQNN-KAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLP 358
Query: 164 FLCKGGMDN----LDHGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKN 219
+ + H +LI G V +T K+ + ++NSWG G+ +++
Sbjct: 359 QQKASRIRYHESLMTHAMLITGCHVDET---SKLPLRYRVENSWGKDSGKDG--LYVMTQ 413
Query: 220 SW 221
+
Sbjct: 414 KY 415
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 453
Score = 39.5 bits (92), Expect = 2e-04
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 25/124 (20%)
Query: 118 KIQSYVNVSSDE-TEMAKYLVKNGPMAVAINANAMQFYFG--GV----SHPLKFLCKGGM 170
+ Y N D +M +K+G AV + + + G+ + + + +
Sbjct: 295 RKTLYNNQPIDFLKKMVAASIKDG-EAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSL 353
Query: 171 DNLD-------------HGVLIVGYGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWII 217
N++ H + + W ++NSWG G K + +
Sbjct: 354 KNMNKAERLTFGESLMTHAMTFTAVSEKDDQ-DGAFT-KWRVENSWGEDHGHKG--YLCM 409
Query: 218 KNSW 221
+ W
Sbjct: 410 TDEW 413
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein
CadC {Staphylococcus aureus [TaxId: 1280]}
Length = 108
Score = 27.1 bits (60), Expect = 0.78
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 127 SDET--EMAKYLVKNGPMAVAINANAMQFYFGGVSHPLKFLCKGGM 170
+DE ++ L ++ + V AN + SH L+ L K G+
Sbjct: 29 ADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGV 74
>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 308
Score = 27.5 bits (61), Expect = 1.4
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 82 FETIISK--LGGGLEGEKDYPYKGSNRACHLNKEEIRVKIQSYVNVSSDETEMAKYLVKN 139
+ + S+ + +E K + E + V S + +M +
Sbjct: 162 LDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGL 221
Query: 140 GPMAVAINAN 149
G +A+A N N
Sbjct: 222 GGVAIAFNGN 231
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 26.6 bits (57), Expect = 3.5
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 191 HKIQPYWIIKNSWGPHWGEKTMPFWIIKNSWGPRWGEQVTKSIYSSAPV 239
++ + P W P + + G R + S+PV
Sbjct: 63 EGLKVVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPV 111
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 25.3 bits (55), Expect = 3.8
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 182 YGVHKTKFTHKIQPYWIIKNSWGPHWGEKTMPFWIIKNSW 221
+G+ NS P W E+ F I
Sbjct: 27 FGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE 66
>d1hyrc2 d.19.1.1 (C:0-180) Class I MHC homolog {Human (Homo
sapiens), Mic-a [TaxId: 9606]}
Length = 181
Score = 24.9 bits (54), Expect = 8.7
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 41 RIFRANLKKIQIRGEGTHLALKLVDCDKVDAGCGGGLMSNAFE 83
+ R L I+ + EG H ++ C+ + ++
Sbjct: 72 KDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYD 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 934,627
Number of extensions: 43029
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 36
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)