BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17274
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/178 (69%), Positives = 147/178 (82%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKI++NKK++AL+QMA++ QA LAM H+ R++GK +R +SKHQA
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQA 405
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E HLRVSFSKS I
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 147/178 (82%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKI++NKK++AL+QMA++ QA +AM H+ R++GK +R +SKHQA
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQA 405
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
FTE G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E HLRVSFSKS I
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 259 bits (662), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 147/178 (82%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKI++NKK++AL+QMA+++QA LAM H+ R++GK +R +SKHQA
Sbjct: 375 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 434
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKD++ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SVT D+LK
Sbjct: 435 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 494
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F E G +VK FKFF KDRKMAL+QL S+EEAI ALI++HNH L E HLRVSFSKS I
Sbjct: 495 FIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 552
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 90 SKNFQNIYPP-SPT--LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
SK F+ PP SP+ LHL IP VTE E+ G K + A L++
Sbjct: 45 SKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLML--KGKSQAFLEMA 102
Query: 147 SIEEAITALIQMHNHQLSEQSHLR 170
S E A+T M N+ HLR
Sbjct: 103 SEEAAVT----MVNYYTPITPHLR 122
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 147/178 (82%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKIL+NKK++AL++MA+ QA LAM H++ ++ GK +R+ +SKHQ+
Sbjct: 378 LFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 437
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKDY +SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+ED+LK
Sbjct: 438 VQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 497
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F+ G VKGFKFF KDRKMAL+Q+ S+EEA+ ALI++HNH L E HLRVSFSKS I
Sbjct: 498 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 555
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 145/178 (81%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVK+L+NKK++AL+QMA+ QA LAM H++ ++ GK +R+ +SKHQ+
Sbjct: 354 LFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQS 413
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKDY SPLHRFKKPGSKNFQNI+PPS TLHLSNIP S++ED+LK
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKIL 473
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F+ G VKGFKFF KDRKMAL+Q+ S+EEAI ALI +HNH L E HLRVSFSKS I
Sbjct: 474 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 531
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 145/178 (81%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++ ++ GK +R+ +SKHQ
Sbjct: 354 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKDY SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV+E++LK
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 473
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F+ G VKGFKFF KDRKMAL+Q+ S+EEA+ ALI +HNH L E HLRVSFSKS I
Sbjct: 474 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 249 bits (637), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 143/178 (80%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVY DV RVKIL+NKK++AL+QMA+ QA LAM H++ ++ GK +R+ +SKHQ
Sbjct: 380 LFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQN 439
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EGQ D GLTKDY SPLHRFKKPGSKNFQNI+PPS TLHLSNIP S++E++LK
Sbjct: 440 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKIL 499
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F+ G VKGFKFF KDRKMAL+Q+ S+EEAI ALI +HNH L E HLRVSFSKS I
Sbjct: 500 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 557
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++ +++GK +RV +SKHQ
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EG D GLTKD+ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++ +++GK +RV +SKHQ
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EG D GLTKD+ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 247 bits (630), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 143/178 (80%), Gaps = 1/178 (0%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L GVYGDV RVKILYNKKDSALIQMA+ +Q+ LAM H++ +++GK +RV +SKHQ
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
VQLP+EG D GLTKD+ SPLHRFKKPGSKNFQNI+PPS TLHLSNIP SV E++L+
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F G TVK FKFF +D KMALLQ+ ++EEAI ALI +HN+ L E HLRVSFSKS I
Sbjct: 475 FANTGGTVKAFKFF-QDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 129/180 (71%), Gaps = 6/180 (3%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAM--MHMDKLRVFGKQMRVMISKH 58
+F L GVYGDV RVKIL+NKK++AL+QMA+ QA L R V S+
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASEC 411
Query: 59 QAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
A +EGQ D GLTKDY +SPL RFKKPGSKNFQNI+PPS TLHLSNIP SV+ED+LK
Sbjct: 412 AAA---REGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLK 467
Query: 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
F+ G VKGFKFF KDRKMAL+Q+ S+EEA+ ALI++HNH L E HLRVSFSKS I
Sbjct: 468 SLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 527
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L +YG+++R+K+L NK D AL+QM + QA LA+ + +FGK++ V SKH
Sbjct: 262 LFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPN 321
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEA 120
+ + + DY S L+RF + +KN++ P+ +HLS +P VTE+E+
Sbjct: 322 ITPGTD-------SHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNH 374
Query: 121 FTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
E G V F +K AL+Q ++ EEA AL+ H L S +R+SFS+
Sbjct: 375 VQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGG-SIIRISFSQ 428
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 101/189 (53%), Gaps = 12/189 (6%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L +YG++ +VK + +AL++M + + A+ H++ +++FGK++ V +SK +
Sbjct: 352 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 411
Query: 61 VQLPKEGQPDAGLT--KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
V + + + G + KD+ S +RF G + I PPS LH N+P VTE+
Sbjct: 412 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 471
Query: 119 EAFTE-KGFTVKGFKFF---PKDRKMA-LLQLDSIEEAITALIQMHNHQL-----SEQSH 168
+ + + T +K F P + ++ LL+ + +A+ AL ++++Q+ S
Sbjct: 472 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT 531
Query: 169 LRVSFSKSN 177
L++ FS S+
Sbjct: 532 LKLCFSTSS 540
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 73.2 bits (178), Expect = 9e-13, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F++ +YG+V +VK + +K +A+++MA+ + A+ H++ +FG++M V +SK A
Sbjct: 396 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 455
Query: 61 VQLPKE--GQPDAGLT-KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL 117
+ +P + G D + KD++ S +RF P I PS LH N P VTE+
Sbjct: 456 I-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 514
Query: 118 KEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL 163
E E G +VK F + LL+ DS +A+ L ++++Q+
Sbjct: 515 FEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 564
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 70.5 bits (171), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F+L +YG++ +VK + +AL++M + + A+ H++ +++FGK++ V +SK +
Sbjct: 401 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 460
Query: 61 VQLPKEGQPDAGLT--KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
V + + + G + KD+ S +RF G + I PPS LH N+P VTE+
Sbjct: 461 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 520
Query: 119 EAFTEKGFTVKGFKFFPKDRKMA------LLQLDSIEEAITALIQMHNHQL-----SEQS 167
+ + + K+ D K + LL+ +A+ AL ++++Q+ S
Sbjct: 521 KLCNDHE-VLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPY 579
Query: 168 HLRVSFSKSN 177
L++ FS S+
Sbjct: 580 TLKLCFSTSS 589
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F++ +YG+V +VK + +K +A+++MA+ + A+ H++ +FG+++ V +SK A
Sbjct: 399 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA 458
Query: 61 VQLPKE--GQPDAGLT-KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL 117
+ +P + G D + KD++ S +RF P I PS LH N P VTE+
Sbjct: 459 I-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 517
Query: 118 KEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL 163
E E G +VK F + LL+ +S +A+ L ++++Q+
Sbjct: 518 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80
K ++ AE + + AM M+ L + MR+ + PK+ + G+ + Y
Sbjct: 158 KGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI------SAATPKK---NVGVQQQYVTK 208
Query: 81 PLHRFKKPGSKNF---QNIYPP-----SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK 132
++ P + + PP T+ ++N+ +VTE+ELK+AF++ G + +
Sbjct: 209 AVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVI--YV 266
Query: 133 FFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQD 180
P + +Q + A A+ +M + +Q+ +R+S+SK+ QD
Sbjct: 267 KIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQA-VRISWSKNPGQD 313
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFT-EKGF----------TVKG 130
L R P + QN PP TL++ N+P+ TE EL++ F+ ++GF T G
Sbjct: 521 LARIPPPANPADQN--PPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNG 578
Query: 131 FKFFPKDRKMALLQLDSIEEAITALIQMHNHQL-----SEQSHLRVSFSK 175
P M ++ D + A AL +++ QL S + +R+SFSK
Sbjct: 579 HSHGP----MCFVEFDDVSFATRALAELYGRQLPRSTVSSKGGIRLSFSK 624
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 63 LPKEGQP----DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
+P GQ + GLT D L F+KPG K F L + N+P +TE+E++
Sbjct: 41 IPANGQQASSQNEGLTID-----LKNFRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
+ F + G G F KD+ ++L++ A A +++ N L + LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFA 144
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 63 LPKEGQP----DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
+P GQ + GLT D L F+KPG K F L + N+P +TE+E++
Sbjct: 41 IPANGQQASSQNEGLTID-----LKNFRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
+ F + G G F KD+ ++L++ A A +++ N L + LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFA 144
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 63 LPKEGQP----DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
+P GQ + GLT D L F+KPG K F L + N+P +TE+E++
Sbjct: 46 IPANGQQASSQNEGLTID-----LKNFRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 96
Query: 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
+ F + G G F KD+ ++L++ A A +++ N L + LRV F+
Sbjct: 97 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFA 149
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 63 LPKEGQP----DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELK 118
+P GQ + GLT D L F+KPG K F L + N+P +TE+E++
Sbjct: 43 IPANGQQASSQNEGLTID-----LKNFRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 93
Query: 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
+ F + G G F KD+ ++L++ A A +++ N L + LRV F+
Sbjct: 94 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK-QLRVRFA 146
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 93 FQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAI 152
F+ PPS LHL N+P TE+EL E G V +R A ++ + + +AI
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 153 TALIQMHNHQLSEQSHLR---VSFSKSNIQDIRDN 184
+ + SE + +R V SN Q+I +N
Sbjct: 70 QMI--SYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 32/179 (17%)
Query: 7 VYGDVLRVKILYNK-----KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61
VYG V K++ ++ K ++ A+ ++ AM M+ + MR+
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI-------- 228
Query: 62 QLPKEGQPDAGLTKDYTASPLH--RFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKE 119
G + A P+ ++ N + P + T+ + + A+VT+DELK
Sbjct: 229 ----------GPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKS 278
Query: 120 AFTEKG--FTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
F + G VK P ++ +Q + A AL ++ QL QS +R+S+ +S
Sbjct: 279 IFGQFGELLHVK----IPPGKRCGFVQYANKASAEHALSVLNGTQLGGQS-IRLSWGRS 332
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 88 PGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAF-TEKGFTVKGFKFFPKDRKMALLQLD 146
P + N + PP T+++ N+P S +E+ELK F T+ G+ F+ + M ++ +
Sbjct: 413 PTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFR-TKGNGPMCFVEFE 471
Query: 147 SIEEAITALIQMHNHQLSE--QSHLRVSFSKS 176
+I A+ AL + LS + +R+SFSK+
Sbjct: 472 NIPYAMEALKNLQGVCLSSSIKGGIRLSFSKN 503
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKM 140
+ +PG ++ ++ L+++N+P ++T+DEL++ F + G V+ K K R +
Sbjct: 160 YARPGGESIKDT-----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGV 214
Query: 141 ALLQLDSIEEAITALIQMHN 160
A ++ + EEA A+ ++N
Sbjct: 215 AFVRFNKREEAQEAISALNN 234
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 32/201 (15%)
Query: 4 LTGVYGDVLRVKI--LYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61
L G YG V+ V+ + A + A A+ + ++GK M + SK ++
Sbjct: 49 LFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSKSD 108
Query: 62 QLPKEGQPDAGLTKD----------------YTASPLHRFKKPGSKNF----------QN 95
+ + P+ T+ A+P KKP K ++
Sbjct: 109 IIVQRESPEEIETRKKDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNVGAERKSTINED 168
Query: 96 IYPPSPTLHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPKDRKMALLQLDSIEEAITA 154
+ PP+ L L NIP V D L + F GF + + P R +A ++ DS EA A
Sbjct: 169 LLPPNKVLLLQNIPQEVNADVLTQIFEAFSGF--QEVRMVPGRRGIAFVEYDSDREATVA 226
Query: 155 LIQMHNHQLSEQSHLRVSFSK 175
LS + ++V+F++
Sbjct: 227 KNGTTGMSLS-GNQIKVTFAR 246
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKM 140
+ +PG ++ ++ L+++N+P ++T+DEL++ F + G V+ K + R +
Sbjct: 177 YARPGGESIKDT-----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGV 231
Query: 141 ALLQLDSIEEAITALIQMHN 160
A ++ + EEA A+ ++N
Sbjct: 232 AFVRFNKREEAQEAISALNN 251
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 86 KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFT-EKGFTVKGFK---------FFP 135
K P N + PP TL++ N+P TE EL++ F+ ++GF F+
Sbjct: 518 KVPPPANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGH 577
Query: 136 KDRKMALLQLDSIEEAITALIQMHNHQ-------LSEQSHLRVSFSKS 176
+ ++ + + A AL +++ Q L+ + +R+SFSK+
Sbjct: 578 GHGPICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKN 625
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKM 140
+ +PG ++ ++ L+++N+P ++T+D+L F + G V+ K K R +
Sbjct: 185 YARPGGESIKDT-----NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGV 239
Query: 141 ALLQLDSIEEAITALIQMHN 160
A ++ + EEA A+ ++N
Sbjct: 240 AFVRFNKREEAQEAISALNN 259
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 99 PSPTLHLSNIPASVTEDELKEA----FTEKG--FTVKGFKFFPKDRKMALLQLDSIEEAI 152
P+ T++++N+ V DELK++ F++ G + FK F K + A + D+ E A
Sbjct: 16 PNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTF-KHKGQAWVVFDNTESAS 74
Query: 153 TALIQMHNHQLSEQSHLRVSFSKS 176
TA+ +M+N ++ +R+ ++K+
Sbjct: 75 TAIAKMNNFPFYDK-EMRIQYAKT 97
>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich OS=Homo sapiens
GN=SFPQ PE=1 SV=2
Length = 707
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQ 144
++PG K + L + N+PA +TEDE K F + G G F K + ++
Sbjct: 285 LRRPGEKTYTQRC----RLFVGNLPADITEDEFKRLFAKYG--EPGEVFINKGKGFGFIK 338
Query: 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
L+S A A ++ + + + LRV F+
Sbjct: 339 LESRALAEIAKAELDDTPMRGR-QLRVRFA 367
>sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-rich OS=Mus musculus
GN=Sfpq PE=1 SV=1
Length = 699
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQ 144
++PG K + L + N+PA +TEDE K F + G G F K + ++
Sbjct: 277 LRRPGEKTYTQRC----RLFVGNLPADITEDEFKRLFAKYG--EPGEVFINKGKGFGFIK 330
Query: 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
L+S A A ++ + + + LRV F+
Sbjct: 331 LESRALAEIAKAELDDTPMRGR-QLRVRFA 359
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
T ++ NIP TE +L F GF + FK +P ++ ++ D+ E+A ++ + N
Sbjct: 342 TAYIGNIPHFATEADLIPLFQNFGFILD-FKHYP-EKGCCFIKYDTHEQAAVCIVALANF 399
Query: 162 QLSEQSHLRVSFSK 175
+ +LR + K
Sbjct: 400 PF-QGRNLRTGWGK 412
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITA----L 155
T+ ++N+P+ ++E+ELK F + G ++ F KD K+A ++ E + A L
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAAKTRDL 650
Query: 156 IQMHNHQLSEQSHLRVSFSKSNI 178
+ H++S Q H+ + +N
Sbjct: 651 KSIRGHEISVQIHVDTNLYVTNF 673
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKM 140
+ +PG ++ ++ L+++N+P ++T+D+L F + G V+ K + R +
Sbjct: 202 YARPGGESIKDT-----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 256
Query: 141 ALLQLDSIEEAITALIQMHN 160
A ++ + EEA A+ ++N
Sbjct: 257 AFVRYNKREEAQEAISALNN 276
>sp|Q8U0N7|RTCA_PYRFU RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rtcA PE=3
SV=1
Length = 342
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 35 HLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQ 94
+L + M LR G + + + + PK G AG K P K+ ++ F+
Sbjct: 131 YLINVTMFALRKIGIEGEIKLLRRG--HYPKGGGIVAGYVK-----PWIERKELIAEEFE 183
Query: 95 NIYPPSPTLHLSNIPASVTEDELKEAFTE 123
NIY S H +N+PA V E + K A E
Sbjct: 184 NIYKVSGISHATNLPAHVAERQAKAAMEE 212
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 85 FKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKM 140
+ +PG ++ ++ L+++N+P ++T+D+L F + G V+ K + R +
Sbjct: 200 YARPGGESIKDT-----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 254
Query: 141 ALLQLDSIEEAITALIQMHN 160
A ++ + EEA A+ ++N
Sbjct: 255 AFVRYNKREEAQEAISALNN 274
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 62 QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAF 121
Q+P G P L A P+ +P S+N PP+ L L+N+P E L F
Sbjct: 179 QMPPGGMPHGQLMPGQMA-PM----QPISEN-----PPNHILFLTNLPEETNELMLSMLF 228
Query: 122 TE-KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
+ GF K + P +A ++ D+ +A A + ++++ + +++SF+K
Sbjct: 229 NQFPGF--KEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAK 281
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
P + T+ + + SVTED+LK F + G V P ++ +Q + A AL
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELVH--VKIPAGKRCGFVQYANRACAEQALSV 332
Query: 158 MHNHQLSEQSHLRVSFSKS 176
++ QL QS +R+S+ +S
Sbjct: 333 LNGTQLGGQS-IRLSWGRS 350
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 VYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61
VYG + R+ ++YNK+ A I+ H A H D ++ G+++ V + + + V
Sbjct: 125 VYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184
Query: 62 Q 62
+
Sbjct: 185 K 185
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-----PKDRKMALLQLDSIEEAITALIQ 157
L++ N+P S+T +L E F E G TV + + R A + + S+EEA A+
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAG-TVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 158 MHNHQLSEQSHLRVSF 173
Q+ ++ ++V+F
Sbjct: 175 FDGSQVGGRT-VKVNF 189
>sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2
Length = 847
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLR--VFGKQMRVMIS-KHQAVQLPKEG 67
V+ ++ NK + A I+MA + A A+ + VFGK +RV +S K++ ++ P EG
Sbjct: 424 VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EG 482
Query: 68 QPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFT 127
+PD + F +HLSN+P S D E
Sbjct: 483 KPD--------------------QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGK 522
Query: 128 VKGFKFFPKDRKMALLQLDSIEEAIT 153
+K + + + A +++++ E+A+
Sbjct: 523 IKNYILM-RMKSQAFIEMETREDAMA 547
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 70 DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVK 129
+ G T D + F KPG K + L + N+P +TED+ K F G +
Sbjct: 57 EGGFTID-----IKSFLKPGEKTYTQRC----RLFVGNLPTDITEDDFKRLFERYGEPSE 107
Query: 130 GFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174
F +DR ++L+S A A ++ L + LR+ F+
Sbjct: 108 --VFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP-LRIRFA 149
>sp|Q8K310|MATR3_MOUSE Matrin-3 OS=Mus musculus GN=Matr3 PE=1 SV=1
Length = 846
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLR--VFGKQMRVMIS-KHQAVQLPKEG 67
V+ ++ NK + A I+MA + A A+ + VFGK +RV +S K++ ++ P EG
Sbjct: 424 VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EG 482
Query: 68 QPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFT 127
+PD + F +HLSN+P S D E
Sbjct: 483 KPD--------------------QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGK 522
Query: 128 VKGFKFFPKDRKMALLQLDSIEEAIT 153
+K + + + A +++++ E+A+
Sbjct: 523 IKNYILM-RMKSQAFIEMETREDAMA 547
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 90 SKNFQNIYPP---SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
S+N N P S L ++N+ S TED L+E F EK +++ + + + A ++
Sbjct: 401 SQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVF-EKATSIRIPQNQGRAKGFAFIEFS 459
Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFS 174
S E+A A+ +N ++ E +R+ FS
Sbjct: 460 SAEDAKDAMDSCNNTEI-EGRSIRLEFS 486
>sp|P43244|MATR3_RAT Matrin-3 OS=Rattus norvegicus GN=Matr3 PE=1 SV=2
Length = 845
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLR--VFGKQMRVMIS-KHQAVQLPKEG 67
V+ ++ NK + A I+MA + A A+ + VFGK +RV +S K++ ++ P EG
Sbjct: 424 VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EG 482
Query: 68 QPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFT 127
+PD + F +HLSN+P S D E
Sbjct: 483 KPD--------------------EKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGK 522
Query: 128 VKGFKFFPKDRKMALLQLDSIEEAIT 153
+K + + + A +++++ E+A+
Sbjct: 523 IKNYILM-RMKSQAFIEMETREDAMA 547
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 62 QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAF 121
QL +E D KD A + +P + T ++N+P + EDEL++ F
Sbjct: 141 QLDEEADADKDTEKDRMAMGM----RPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLF 196
Query: 122 TEKGFTVKGF----KFFPKDRKMALLQLDSIEEAITALIQMHN 160
+ G ++ F K + A + +S ++A A+ ++++
Sbjct: 197 GKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 7 VYGDVLRVKILYNK--------KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
VYG + R+ I+YNK + A I+ H A H D ++ G+++ V + +
Sbjct: 125 VYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184
Query: 59 QAVQ 62
+ V+
Sbjct: 185 RTVK 188
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 7 VYGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61
VYG + R+ ++Y+K+ A I+ H A H D ++ G+++ V + + + V
Sbjct: 125 VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184
Query: 62 Q 62
+
Sbjct: 185 K 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,040,319
Number of Sequences: 539616
Number of extensions: 2538507
Number of successful extensions: 7314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 7239
Number of HSP's gapped (non-prelim): 152
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)