Query psy17274
Match_columns 184
No_of_seqs 161 out of 1307
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:48:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-35 3.8E-40 243.2 21.2 177 1-178 293-481 (481)
2 KOG1190|consensus 100.0 8.7E-35 1.9E-39 223.6 15.8 178 1-178 315-492 (492)
3 KOG1456|consensus 100.0 8.3E-32 1.8E-36 205.4 16.6 178 1-178 305-492 (494)
4 KOG0148|consensus 100.0 3.1E-32 6.8E-37 199.8 13.7 160 1-182 79-243 (321)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.7E-31 1.2E-35 216.6 20.8 171 1-177 113-351 (481)
6 TIGR01659 sex-lethal sex-letha 100.0 3E-30 6.4E-35 203.0 17.1 141 1-177 124-275 (346)
7 TIGR01645 half-pint poly-U bin 100.0 2.8E-29 6.1E-34 207.5 17.9 152 1-178 124-285 (612)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-28 3.4E-33 195.2 20.6 176 1-178 106-350 (352)
9 KOG0117|consensus 100.0 2.9E-28 6.4E-33 189.6 15.0 172 1-177 100-331 (506)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.6E-28 1.7E-32 191.3 17.4 142 1-178 20-172 (352)
11 TIGR01622 SF-CC1 splicing fact 100.0 6E-27 1.3E-31 192.1 17.5 150 1-176 106-265 (457)
12 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-26 4E-31 193.5 16.5 141 1-176 17-166 (562)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 5.6E-26 1.2E-30 187.6 16.0 173 1-178 75-308 (578)
14 TIGR01628 PABP-1234 polyadenyl 99.9 4.7E-26 1E-30 191.1 15.4 158 1-177 195-364 (562)
15 KOG0145|consensus 99.9 2.6E-26 5.5E-31 168.2 12.0 145 1-181 58-213 (360)
16 KOG4206|consensus 99.9 7E-25 1.5E-29 158.0 15.0 172 1-175 30-220 (221)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-24 3.9E-29 179.6 18.1 167 1-176 312-501 (509)
18 KOG0109|consensus 99.9 8.9E-26 1.9E-30 167.5 8.8 134 1-179 19-152 (346)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.1E-24 1.1E-28 176.9 19.0 159 9-177 212-375 (509)
20 KOG0131|consensus 99.9 9E-25 2E-29 152.2 10.3 142 1-177 26-177 (203)
21 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-23 6E-28 170.5 20.2 175 1-177 203-448 (457)
22 KOG0145|consensus 99.9 5.4E-24 1.2E-28 156.1 12.3 175 1-177 144-358 (360)
23 KOG0144|consensus 99.9 3.7E-24 7.9E-29 166.3 10.6 142 1-177 51-206 (510)
24 KOG1190|consensus 99.9 2.5E-23 5.4E-28 160.7 15.0 175 1-181 167-377 (492)
25 KOG0123|consensus 99.9 3.8E-23 8.1E-28 163.8 14.5 134 1-177 15-153 (369)
26 KOG0127|consensus 99.9 7.6E-22 1.6E-26 157.4 17.1 175 1-177 134-378 (678)
27 KOG0127|consensus 99.9 5.6E-22 1.2E-26 158.1 14.0 165 1-177 22-196 (678)
28 KOG0110|consensus 99.9 1.6E-21 3.4E-26 159.5 12.6 149 1-177 532-693 (725)
29 KOG0124|consensus 99.9 3.2E-21 7E-26 147.6 10.9 150 2-177 131-290 (544)
30 KOG1456|consensus 99.9 6.3E-20 1.4E-24 140.7 17.5 171 1-177 139-363 (494)
31 KOG0147|consensus 99.8 2.8E-20 6.1E-25 148.6 8.6 153 1-177 196-358 (549)
32 KOG0123|consensus 99.8 1.1E-19 2.4E-24 144.1 11.8 146 1-176 93-245 (369)
33 KOG0105|consensus 99.8 1.7E-18 3.8E-23 121.3 14.6 150 1-165 23-177 (241)
34 KOG0146|consensus 99.8 1.9E-19 4.1E-24 132.8 7.3 77 99-177 284-365 (371)
35 TIGR01645 half-pint poly-U bin 99.8 2.3E-17 5.1E-22 137.1 20.2 74 99-174 513-600 (612)
36 KOG0144|consensus 99.8 5.2E-19 1.1E-23 137.8 8.4 78 99-178 423-505 (510)
37 PLN03134 glycine-rich RNA-bind 99.8 2.8E-18 6.2E-23 119.6 10.6 78 99-178 33-115 (144)
38 KOG0147|consensus 99.8 2.1E-17 4.5E-22 132.3 14.3 175 1-177 295-528 (549)
39 KOG0110|consensus 99.7 2.9E-17 6.3E-22 134.8 13.3 170 2-175 403-596 (725)
40 PF00076 RRM_1: RNA recognitio 99.7 1.4E-17 3.1E-22 102.0 7.9 66 103-170 1-70 (70)
41 KOG1457|consensus 99.7 1.2E-16 2.7E-21 115.1 12.0 164 1-165 51-275 (284)
42 PF13893 RRM_5: RNA recognitio 99.7 3.8E-17 8.3E-22 96.0 7.4 56 1-56 1-56 (56)
43 TIGR01659 sex-lethal sex-letha 99.7 2.9E-16 6.3E-21 124.0 10.4 78 98-177 105-187 (346)
44 KOG0148|consensus 99.7 1.3E-16 2.7E-21 118.0 7.7 80 101-182 63-147 (321)
45 KOG0106|consensus 99.7 1.2E-16 2.5E-21 116.5 6.7 149 2-173 19-167 (216)
46 KOG0125|consensus 99.7 1.8E-16 4E-21 119.9 7.7 76 100-177 96-174 (376)
47 KOG0114|consensus 99.7 6.1E-16 1.3E-20 98.7 8.8 74 100-175 18-93 (124)
48 KOG0107|consensus 99.7 3.8E-16 8.1E-21 108.7 7.8 79 99-179 9-87 (195)
49 PLN03120 nucleic acid binding 99.7 1.4E-15 2.9E-20 113.7 10.6 74 100-176 4-79 (260)
50 PF14259 RRM_6: RNA recognitio 99.6 1.4E-15 3.1E-20 93.3 8.4 66 103-170 1-70 (70)
51 PF13893 RRM_5: RNA recognitio 99.6 2.2E-15 4.7E-20 88.5 7.9 56 117-174 1-56 (56)
52 KOG0122|consensus 99.6 6.2E-15 1.3E-19 107.7 10.2 78 98-177 187-269 (270)
53 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-14 2.3E-19 121.1 11.6 114 30-175 18-136 (578)
54 KOG4212|consensus 99.6 4.2E-14 9.1E-19 111.0 14.0 73 99-173 535-607 (608)
55 smart00362 RRM_2 RNA recogniti 99.6 1.6E-14 3.5E-19 88.0 8.7 69 102-172 1-72 (72)
56 KOG0105|consensus 99.6 9.7E-15 2.1E-19 102.6 6.3 77 99-177 5-83 (241)
57 KOG1548|consensus 99.5 1.3E-13 2.7E-18 105.3 12.7 173 2-177 152-352 (382)
58 KOG0124|consensus 99.5 3.6E-13 7.8E-18 103.8 14.4 72 99-172 445-530 (544)
59 cd00590 RRM RRM (RNA recogniti 99.5 1.2E-13 2.5E-18 84.6 9.5 70 102-173 1-74 (74)
60 PLN03213 repressor of silencin 99.5 4.5E-14 9.8E-19 112.4 9.4 77 99-177 9-88 (759)
61 KOG4205|consensus 99.5 3.3E-14 7.1E-19 109.8 8.3 144 1-177 23-176 (311)
62 PLN03121 nucleic acid binding 99.5 1.1E-13 2.3E-18 102.2 10.1 74 99-175 4-79 (243)
63 KOG0121|consensus 99.5 4.7E-14 1E-18 93.5 7.1 74 99-174 35-113 (153)
64 smart00360 RRM RNA recognition 99.5 1.6E-13 3.4E-18 83.3 7.8 66 105-172 1-71 (71)
65 KOG4207|consensus 99.5 7.8E-14 1.7E-18 99.7 6.3 76 100-177 13-93 (256)
66 KOG0113|consensus 99.5 7E-13 1.5E-17 99.5 10.3 81 98-180 99-184 (335)
67 KOG0111|consensus 99.5 4.1E-14 8.9E-19 102.0 3.6 79 99-179 9-92 (298)
68 KOG4206|consensus 99.4 4.6E-13 9.9E-18 97.1 7.9 79 99-179 8-92 (221)
69 KOG0120|consensus 99.4 5.6E-13 1.2E-17 108.0 9.3 159 3-174 308-489 (500)
70 KOG0109|consensus 99.4 2.8E-13 6E-18 101.4 5.6 71 102-177 4-74 (346)
71 KOG0131|consensus 99.4 7.1E-13 1.5E-17 93.0 6.9 75 99-175 8-87 (203)
72 KOG0107|consensus 99.4 3.5E-13 7.6E-18 94.0 5.1 61 1-61 27-87 (195)
73 PLN03134 glycine-rich RNA-bind 99.4 1.1E-12 2.3E-17 91.6 7.6 59 1-59 51-114 (144)
74 KOG0130|consensus 99.4 9E-13 2E-17 88.2 6.6 74 99-174 71-149 (170)
75 COG0724 RNA-binding proteins ( 99.4 3.1E-12 6.8E-17 97.4 9.9 74 100-175 115-193 (306)
76 KOG0117|consensus 99.4 1.5E-11 3.3E-16 96.9 13.7 78 99-177 82-164 (506)
77 KOG0132|consensus 99.3 3.2E-12 7E-17 106.5 7.7 77 99-178 420-496 (894)
78 KOG4211|consensus 99.3 3.9E-11 8.6E-16 95.7 12.9 146 1-175 27-180 (510)
79 KOG0108|consensus 99.3 5E-12 1.1E-16 101.8 7.9 75 101-177 19-98 (435)
80 smart00361 RRM_1 RNA recogniti 99.3 8.3E-12 1.8E-16 76.5 7.2 57 114-172 2-70 (70)
81 KOG0126|consensus 99.3 1.5E-13 3.2E-18 96.4 -1.3 77 97-175 32-113 (219)
82 smart00361 RRM_1 RNA recogniti 99.3 1.1E-11 2.3E-16 76.0 6.3 53 1-53 5-69 (70)
83 KOG0125|consensus 99.3 5.6E-12 1.2E-16 95.9 5.5 57 1-57 113-172 (376)
84 PF00076 RRM_1: RNA recognitio 99.3 7.9E-12 1.7E-16 76.2 4.9 52 1-52 15-70 (70)
85 KOG0149|consensus 99.3 1.3E-11 2.9E-16 89.9 6.7 73 101-176 13-90 (247)
86 KOG4212|consensus 99.3 6.4E-10 1.4E-14 87.8 16.3 170 3-174 63-291 (608)
87 KOG0153|consensus 99.3 2.6E-11 5.7E-16 92.9 8.2 74 100-176 228-302 (377)
88 COG0724 RNA-binding proteins ( 99.2 1.8E-10 3.9E-15 87.7 11.0 153 1-165 132-294 (306)
89 KOG4207|consensus 99.2 7.9E-12 1.7E-16 89.5 3.2 61 1-61 30-95 (256)
90 PF11608 Limkain-b1: Limkain b 99.2 1.5E-10 3.3E-15 71.4 8.4 70 102-177 4-77 (90)
91 KOG0415|consensus 99.2 5.5E-11 1.2E-15 91.5 6.9 80 95-176 234-318 (479)
92 KOG4661|consensus 99.2 2.5E-10 5.4E-15 92.8 10.2 78 99-178 404-486 (940)
93 KOG0111|consensus 99.2 1.9E-11 4E-16 88.4 3.4 62 1-62 27-93 (298)
94 KOG4660|consensus 99.2 3.8E-11 8.2E-16 97.0 5.2 73 97-171 72-144 (549)
95 PLN03120 nucleic acid binding 99.1 1.4E-10 3.1E-15 87.0 6.9 57 1-58 21-79 (260)
96 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 3E-15 70.9 5.7 52 1-52 15-70 (70)
97 KOG4208|consensus 99.1 3.4E-10 7.4E-15 81.2 8.1 78 99-177 48-130 (214)
98 KOG0130|consensus 99.1 5.6E-11 1.2E-15 79.7 3.7 57 1-57 89-150 (170)
99 KOG0122|consensus 99.1 1.8E-10 3.9E-15 84.5 6.3 59 1-59 206-269 (270)
100 KOG0114|consensus 99.1 2.7E-10 5.8E-15 73.0 5.9 57 1-57 35-93 (124)
101 smart00360 RRM RNA recognition 99.1 3.7E-10 7.9E-15 68.2 6.2 54 1-54 13-71 (71)
102 KOG0121|consensus 99.1 1.6E-10 3.4E-15 76.9 4.5 56 1-57 53-114 (153)
103 smart00362 RRM_2 RNA recogniti 99.1 4.4E-10 9.5E-15 68.1 6.2 53 1-53 16-71 (72)
104 KOG0120|consensus 99.1 6.2E-10 1.3E-14 90.6 8.7 156 11-182 214-374 (500)
105 PLN03213 repressor of silencin 99.0 6.4E-10 1.4E-14 89.2 6.4 59 1-59 27-88 (759)
106 PLN03121 nucleic acid binding 99.0 1.3E-09 2.9E-14 80.6 6.6 56 1-57 22-79 (243)
107 KOG1457|consensus 99.0 4E-09 8.6E-14 76.7 8.4 80 100-180 34-121 (284)
108 KOG0126|consensus 99.0 1.5E-10 3.3E-15 81.4 1.0 55 2-56 53-112 (219)
109 KOG0151|consensus 98.9 4.7E-09 1E-13 87.3 9.0 78 97-176 171-256 (877)
110 cd00590 RRM RRM (RNA recogniti 98.9 4.5E-09 9.8E-14 63.9 6.6 55 1-55 16-74 (74)
111 KOG0533|consensus 98.9 7.8E-09 1.7E-13 77.3 8.6 76 100-177 83-162 (243)
112 KOG4660|consensus 98.9 7.5E-10 1.6E-14 89.7 3.0 158 1-176 92-249 (549)
113 KOG4208|consensus 98.9 2.9E-09 6.3E-14 76.4 5.5 58 2-59 67-130 (214)
114 KOG0113|consensus 98.9 4.9E-09 1.1E-13 79.1 6.7 62 1-62 118-184 (335)
115 KOG0146|consensus 98.8 1.2E-08 2.7E-13 76.0 7.2 78 99-177 18-101 (371)
116 KOG0112|consensus 98.8 4.1E-09 9E-14 89.6 4.2 137 2-177 390-531 (975)
117 KOG0226|consensus 98.8 1.1E-08 2.5E-13 75.6 5.8 141 2-173 117-266 (290)
118 KOG0108|consensus 98.7 1.4E-08 3E-13 82.1 5.5 61 1-61 35-100 (435)
119 KOG1365|consensus 98.7 1.8E-08 3.9E-13 78.6 3.7 154 10-174 191-359 (508)
120 KOG0106|consensus 98.7 2.4E-08 5.1E-13 73.3 4.0 70 102-176 3-72 (216)
121 KOG1548|consensus 98.6 1.5E-07 3.2E-12 72.6 7.7 76 100-177 134-221 (382)
122 KOG0149|consensus 98.6 3.2E-08 6.9E-13 72.5 3.8 57 1-58 29-90 (247)
123 KOG4210|consensus 98.6 5.8E-08 1.3E-12 75.0 5.3 149 3-178 107-265 (285)
124 PF08777 RRM_3: RNA binding mo 98.6 2.2E-07 4.8E-12 61.2 6.8 59 101-161 2-60 (105)
125 KOG2193|consensus 98.5 5E-09 1.1E-13 82.5 -2.8 119 20-177 36-157 (584)
126 KOG4209|consensus 98.5 1.8E-07 3.9E-12 70.1 5.2 77 99-178 100-181 (231)
127 KOG4454|consensus 98.5 6.4E-08 1.4E-12 70.3 1.7 76 99-176 8-86 (267)
128 KOG0116|consensus 98.4 5E-07 1.1E-11 72.8 6.2 75 100-177 288-367 (419)
129 KOG4661|consensus 98.4 3.7E-07 7.9E-12 74.8 4.7 60 1-60 422-486 (940)
130 KOG0153|consensus 98.4 5.1E-07 1.1E-11 69.7 5.2 57 1-58 245-302 (377)
131 KOG4454|consensus 98.4 1.2E-07 2.5E-12 69.0 1.3 119 1-164 26-151 (267)
132 KOG0132|consensus 98.4 5.8E-07 1.2E-11 75.8 5.1 58 1-59 438-495 (894)
133 KOG0128|consensus 98.3 1E-07 2.2E-12 80.9 0.4 121 2-176 685-814 (881)
134 KOG0129|consensus 98.3 2E-05 4.3E-10 64.0 13.2 135 2-157 277-432 (520)
135 PF04059 RRM_2: RNA recognitio 98.2 1.7E-05 3.7E-10 51.3 9.0 79 101-179 2-89 (97)
136 KOG0415|consensus 98.2 1.4E-06 3E-11 67.7 4.5 58 1-58 256-318 (479)
137 KOG4211|consensus 98.2 4.2E-06 9.1E-11 67.5 7.3 71 100-174 10-83 (510)
138 PF05172 Nup35_RRM: Nup53/35/4 98.2 9.5E-06 2.1E-10 52.8 7.6 75 100-177 6-92 (100)
139 KOG3152|consensus 98.2 7.5E-07 1.6E-11 66.1 2.7 66 99-165 73-155 (278)
140 COG5175 MOT2 Transcriptional r 98.2 5.8E-06 1.3E-10 63.9 7.0 76 100-177 114-203 (480)
141 PF14605 Nup35_RRM_2: Nup53/35 98.2 9.6E-06 2.1E-10 46.6 5.8 52 101-155 2-53 (53)
142 KOG4307|consensus 98.1 9.8E-06 2.1E-10 68.0 7.6 151 19-174 350-511 (944)
143 KOG0115|consensus 98.1 1E-05 2.3E-10 60.2 6.7 91 32-165 5-99 (275)
144 KOG4205|consensus 98.1 2.8E-06 6.2E-11 66.1 3.8 72 100-174 6-82 (311)
145 PF11608 Limkain-b1: Limkain b 98.1 1.1E-05 2.4E-10 50.1 4.9 51 2-57 24-75 (90)
146 KOG1365|consensus 98.0 0.00012 2.6E-09 57.7 10.9 130 19-170 100-236 (508)
147 KOG4307|consensus 98.0 3.2E-05 7E-10 65.0 7.5 72 101-173 868-943 (944)
148 PF08952 DUF1866: Domain of un 97.9 0.00012 2.6E-09 50.5 7.9 74 98-177 25-107 (146)
149 KOG2202|consensus 97.9 4.2E-06 9E-11 62.3 0.6 56 2-57 86-146 (260)
150 KOG1995|consensus 97.8 2E-05 4.4E-10 61.3 4.1 78 99-178 65-155 (351)
151 KOG1996|consensus 97.8 7.1E-05 1.5E-09 57.0 6.2 74 99-174 280-364 (378)
152 KOG1855|consensus 97.7 3.5E-05 7.6E-10 61.3 4.0 64 99-163 230-311 (484)
153 KOG0151|consensus 97.7 4.4E-05 9.5E-10 64.3 4.0 59 2-60 192-258 (877)
154 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00015 3.2E-09 47.2 5.6 55 2-57 23-90 (100)
155 KOG0533|consensus 97.6 0.00013 2.8E-09 54.9 5.4 59 1-59 100-162 (243)
156 KOG4209|consensus 97.6 9.5E-05 2.1E-09 55.5 4.6 56 3-59 120-180 (231)
157 PF08952 DUF1866: Domain of un 97.6 0.0002 4.4E-09 49.4 5.8 53 1-57 53-105 (146)
158 KOG2202|consensus 97.6 5E-05 1.1E-09 56.7 2.8 61 115-177 83-148 (260)
159 COG5175 MOT2 Transcriptional r 97.6 0.00016 3.5E-09 56.1 5.5 55 3-57 139-201 (480)
160 KOG4676|consensus 97.6 4.5E-05 9.7E-10 60.1 2.4 162 1-165 24-215 (479)
161 KOG2416|consensus 97.4 0.00024 5.1E-09 58.9 5.1 79 98-177 442-522 (718)
162 KOG2314|consensus 97.4 0.00078 1.7E-08 55.7 7.8 72 100-172 58-139 (698)
163 KOG4676|consensus 97.4 0.00022 4.7E-09 56.4 4.0 73 101-175 8-88 (479)
164 KOG0116|consensus 97.3 0.00023 5E-09 57.7 3.7 56 1-57 305-365 (419)
165 KOG0128|consensus 97.2 6.6E-06 1.4E-10 70.3 -6.0 136 3-165 591-736 (881)
166 PF08675 RNA_bind: RNA binding 97.2 0.0024 5.2E-08 39.8 6.4 57 99-160 8-64 (87)
167 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00052 1.1E-08 39.3 3.3 36 2-38 18-53 (53)
168 PF10309 DUF2414: Protein of u 97.2 0.0041 8.9E-08 36.7 6.9 54 102-158 7-62 (62)
169 KOG2314|consensus 97.1 0.00041 8.9E-09 57.3 3.5 55 1-55 81-140 (698)
170 KOG1996|consensus 97.1 0.00096 2.1E-08 51.0 5.1 54 4-57 306-365 (378)
171 PF15023 DUF4523: Protein of u 97.0 0.0059 1.3E-07 41.9 7.5 75 97-176 83-161 (166)
172 KOG2193|consensus 96.9 0.00081 1.8E-08 53.8 3.4 76 102-180 3-79 (584)
173 KOG0226|consensus 96.9 0.00052 1.1E-08 51.4 1.9 52 5-56 211-267 (290)
174 PF04847 Calcipressin: Calcipr 96.9 0.0031 6.8E-08 45.7 5.5 62 114-178 9-72 (184)
175 PF08777 RRM_3: RNA binding mo 96.8 0.0018 3.8E-08 42.7 3.8 43 1-44 18-60 (105)
176 PF15023 DUF4523: Protein of u 96.8 0.003 6.5E-08 43.4 4.9 52 3-57 109-160 (166)
177 PF04847 Calcipressin: Calcipr 96.7 0.0042 9.1E-08 45.0 5.2 58 1-59 12-71 (184)
178 KOG4574|consensus 96.6 0.0019 4.2E-08 55.8 3.3 77 98-177 296-374 (1007)
179 PF08675 RNA_bind: RNA binding 96.6 0.0062 1.3E-07 38.0 4.6 40 1-43 25-64 (87)
180 KOG4285|consensus 96.5 0.0038 8.3E-08 47.9 4.1 55 1-57 213-268 (350)
181 PF07576 BRAP2: BRCA1-associat 96.5 0.041 8.8E-07 36.5 8.3 67 100-166 13-82 (110)
182 KOG0112|consensus 96.3 0.00089 1.9E-08 58.1 -0.6 74 99-174 371-448 (975)
183 KOG4574|consensus 96.2 0.0029 6.3E-08 54.7 2.3 60 1-61 315-376 (1007)
184 KOG4285|consensus 96.1 0.031 6.8E-07 43.1 7.0 62 101-166 198-259 (350)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.016 3.5E-07 41.8 5.0 78 100-177 7-98 (176)
186 KOG2068|consensus 96.0 0.0023 5.1E-08 49.8 0.7 74 102-177 79-163 (327)
187 KOG4849|consensus 95.9 0.0087 1.9E-07 47.0 3.5 77 102-178 82-164 (498)
188 KOG0129|consensus 95.9 0.042 9.1E-07 45.3 7.5 59 100-160 259-328 (520)
189 KOG1995|consensus 95.8 0.0048 1E-07 48.4 1.7 59 1-59 83-154 (351)
190 KOG2135|consensus 95.8 0.0057 1.2E-07 49.7 2.2 73 101-177 373-446 (526)
191 PF04059 RRM_2: RNA recognitio 95.8 0.018 3.8E-07 37.3 4.0 40 20-59 44-87 (97)
192 KOG1855|consensus 95.4 0.0045 9.8E-08 49.7 0.3 46 1-46 248-311 (484)
193 PF11767 SET_assoc: Histone ly 95.1 0.14 3.1E-06 30.6 6.0 56 110-171 10-65 (66)
194 PF07292 NID: Nmi/IFP 35 domai 94.9 0.054 1.2E-06 34.3 4.1 72 24-121 1-73 (88)
195 KOG0804|consensus 94.1 0.22 4.7E-06 40.7 6.5 68 99-166 73-143 (493)
196 KOG4210|consensus 94.1 0.021 4.6E-07 44.4 0.9 55 2-57 203-262 (285)
197 PF03880 DbpA: DbpA RNA bindin 93.9 0.2 4.3E-06 30.6 4.9 42 11-56 33-74 (74)
198 KOG2068|consensus 93.8 0.03 6.5E-07 43.8 1.3 53 4-56 100-160 (327)
199 KOG2318|consensus 93.7 0.66 1.4E-05 39.2 8.8 78 98-175 172-306 (650)
200 PF03880 DbpA: DbpA RNA bindin 93.5 0.6 1.3E-05 28.4 6.5 60 110-174 11-74 (74)
201 KOG3152|consensus 93.3 0.024 5.2E-07 42.7 0.0 50 1-50 91-157 (278)
202 KOG2135|consensus 92.6 0.069 1.5E-06 43.7 1.7 57 1-59 390-446 (526)
203 KOG2591|consensus 92.4 0.97 2.1E-05 38.1 8.0 60 100-161 175-235 (684)
204 PF11767 SET_assoc: Histone ly 92.3 0.26 5.6E-06 29.5 3.5 30 24-53 36-65 (66)
205 KOG2253|consensus 92.0 0.12 2.7E-06 43.9 2.5 66 99-170 39-104 (668)
206 KOG4019|consensus 90.9 0.33 7.1E-06 34.9 3.4 77 103-182 13-95 (193)
207 PF07576 BRAP2: BRCA1-associat 89.2 1.2 2.6E-05 29.5 4.9 38 11-48 41-81 (110)
208 PRK10629 EnvZ/OmpR regulon mod 87.6 6.9 0.00015 26.6 8.7 73 99-175 34-109 (127)
209 KOG4483|consensus 83.9 3 6.5E-05 33.9 5.2 56 100-157 391-446 (528)
210 COG5638 Uncharacterized conser 82.4 14 0.0003 30.4 8.4 78 99-176 145-297 (622)
211 KOG2416|consensus 82.1 0.49 1.1E-05 40.1 0.4 52 7-59 468-522 (718)
212 PRK14548 50S ribosomal protein 81.9 9.3 0.0002 24.0 6.0 55 103-157 23-80 (84)
213 KOG4410|consensus 79.0 5.5 0.00012 30.9 5.0 47 101-148 331-377 (396)
214 TIGR03636 L23_arch archaeal ri 78.6 13 0.00028 22.9 6.0 55 103-157 16-73 (77)
215 PF02714 DUF221: Domain of unk 75.9 6.7 0.00015 30.9 5.0 20 24-43 1-20 (325)
216 PF03468 XS: XS domain; Inter 74.4 4.3 9.2E-05 27.2 3.0 44 102-147 10-65 (116)
217 KOG4019|consensus 73.9 2.4 5.2E-05 30.6 1.8 55 3-58 34-89 (193)
218 PF10567 Nab6_mRNP_bdg: RNA-re 68.7 8.5 0.00018 30.0 3.9 76 99-176 14-107 (309)
219 PF03439 Spt5-NGN: Early trans 68.3 13 0.00027 23.2 4.0 35 10-44 33-67 (84)
220 KOG0804|consensus 64.9 9.8 0.00021 31.5 3.7 39 10-48 101-142 (493)
221 PF15513 DUF4651: Domain of un 63.5 22 0.00049 20.9 4.1 20 115-135 9-28 (62)
222 PF14111 DUF4283: Domain of un 63.3 5.7 0.00012 27.4 2.0 84 20-134 54-138 (153)
223 PRK08559 nusG transcription an 58.4 20 0.00043 25.1 4.0 34 11-44 36-69 (153)
224 PRK08559 nusG transcription an 57.3 44 0.00096 23.4 5.6 43 119-161 27-69 (153)
225 KOG2891|consensus 54.3 7.1 0.00015 30.2 1.2 66 112-178 173-269 (445)
226 PF13721 SecD-TM1: SecD export 54.0 58 0.0013 21.1 8.0 64 99-165 30-96 (101)
227 cd04889 ACT_PDH-BS-like C-term 52.8 38 0.00083 18.7 5.9 41 115-155 13-55 (56)
228 cd04908 ACT_Bt0572_1 N-termina 52.8 44 0.00095 19.3 6.8 52 104-157 7-59 (66)
229 KOG4008|consensus 51.0 15 0.00032 27.8 2.4 32 99-131 39-70 (261)
230 PF11823 DUF3343: Protein of u 50.3 24 0.00052 21.2 2.9 27 139-165 2-28 (73)
231 KOG1295|consensus 49.5 25 0.00053 28.5 3.5 64 102-165 9-79 (376)
232 PF10567 Nab6_mRNP_bdg: RNA-re 49.2 1.3E+02 0.0028 23.7 12.6 161 3-175 34-227 (309)
233 PF11823 DUF3343: Protein of u 48.3 29 0.00062 20.8 3.1 26 22-47 2-27 (73)
234 PRK11901 hypothetical protein; 47.8 64 0.0014 25.8 5.5 51 111-163 253-309 (327)
235 KOG0115|consensus 47.1 14 0.0003 28.3 1.8 54 2-55 49-110 (275)
236 PF14893 PNMA: PNMA 46.8 31 0.00066 27.7 3.7 46 99-148 17-72 (331)
237 PTZ00191 60S ribosomal protein 46.5 1E+02 0.0022 21.6 6.0 53 103-155 84-139 (145)
238 KOG4849|consensus 46.4 16 0.00034 29.3 2.1 35 19-53 122-156 (498)
239 COG0150 PurM Phosphoribosylami 46.4 4.5 9.7E-05 32.2 -0.9 44 1-44 278-322 (345)
240 PF03439 Spt5-NGN: Early trans 45.9 53 0.0011 20.4 4.1 39 127-165 33-71 (84)
241 PF11910 NdhO: Cyanobacterial 45.9 24 0.00053 20.9 2.3 23 4-31 31-53 (67)
242 KOG4365|consensus 45.0 2.7 5.9E-05 34.5 -2.3 73 102-177 5-82 (572)
243 KOG2295|consensus 42.3 3.6 7.9E-05 34.8 -2.0 66 99-165 230-300 (648)
244 KOG2591|consensus 42.2 12 0.00027 31.8 0.9 44 8-53 201-246 (684)
245 cd00027 BRCT Breast Cancer Sup 41.5 64 0.0014 17.9 4.0 28 102-129 3-30 (72)
246 PF08734 GYD: GYD domain; Int 38.5 1E+02 0.0022 19.4 6.5 46 114-159 22-68 (91)
247 COG0445 GidA Flavin-dependent 38.3 1.7E+02 0.0036 25.6 6.9 95 21-135 236-335 (621)
248 PF03467 Smg4_UPF3: Smg-4/UPF3 38.2 77 0.0017 22.8 4.5 40 22-61 56-100 (176)
249 KOG2187|consensus 37.5 30 0.00065 29.4 2.5 40 137-177 62-101 (534)
250 PF11411 DNA_ligase_IV: DNA li 36.9 28 0.00062 18.0 1.5 16 110-125 19-34 (36)
251 cd04489 ExoVII_LU_OBF ExoVII_L 36.2 26 0.00056 20.9 1.6 23 8-32 5-27 (78)
252 KOG2187|consensus 35.5 20 0.00044 30.3 1.2 39 19-57 61-99 (534)
253 cd04903 ACT_LSD C-terminal ACT 35.5 85 0.0018 17.6 6.6 46 113-158 12-62 (71)
254 COG0030 KsgA Dimethyladenosine 35.3 69 0.0015 24.7 4.0 26 100-125 95-120 (259)
255 cd04909 ACT_PDH-BS C-terminal 35.0 92 0.002 17.9 6.1 45 114-158 15-62 (69)
256 PF08544 GHMP_kinases_C: GHMP 33.7 1.1E+02 0.0023 18.3 4.3 37 3-41 41-79 (85)
257 COG0018 ArgS Arginyl-tRNA synt 33.0 3.4E+02 0.0073 23.8 8.3 84 10-134 72-163 (577)
258 PF08156 NOP5NT: NOP5NT (NUC12 32.2 33 0.00073 20.4 1.5 39 115-159 27-65 (67)
259 cd04882 ACT_Bt0572_2 C-termina 32.2 97 0.0021 17.3 5.3 43 115-157 14-59 (65)
260 KOG2318|consensus 31.5 74 0.0016 27.5 3.8 34 23-56 270-305 (650)
261 cd04904 ACT_AAAH ACT domain of 30.6 1.2E+02 0.0027 18.0 5.4 47 114-160 14-65 (74)
262 PF11116 DUF2624: Protein of u 30.5 77 0.0017 20.0 2.9 36 111-164 14-49 (85)
263 PF12829 Mhr1: Transcriptional 29.3 1.6E+02 0.0034 18.8 4.7 53 107-160 19-73 (91)
264 PRK10905 cell division protein 28.8 1.7E+02 0.0037 23.4 5.2 50 110-161 254-309 (328)
265 COG0002 ArgC Acetylglutamate s 28.4 1.7E+02 0.0036 23.8 5.1 28 108-135 253-280 (349)
266 PF00276 Ribosomal_L23: Riboso 28.4 1.2E+02 0.0026 19.1 3.7 32 103-134 22-54 (91)
267 PF08442 ATP-grasp_2: ATP-gras 28.1 1.5E+02 0.0033 21.8 4.7 53 112-164 25-81 (202)
268 PRK15464 cold shock-like prote 27.6 64 0.0014 19.4 2.2 18 130-147 8-25 (70)
269 COG5594 Uncharacterized integr 27.1 72 0.0016 28.8 3.2 36 21-56 357-393 (827)
270 COG1058 CinA Predicted nucleot 26.3 2.5E+02 0.0055 21.6 5.7 61 100-162 180-246 (255)
271 PRK11230 glycolate oxidase sub 26.3 1.2E+02 0.0025 25.9 4.3 37 7-43 216-256 (499)
272 PF00403 HMA: Heavy-metal-asso 26.2 1.3E+02 0.0028 16.8 6.4 54 102-157 1-58 (62)
273 TIGR00405 L26e_arch ribosomal 26.2 2.2E+02 0.0047 19.5 5.7 39 123-161 23-61 (145)
274 PRK09937 stationary phase/star 25.4 78 0.0017 19.2 2.3 16 131-146 6-21 (74)
275 PRK11230 glycolate oxidase sub 25.2 2.6E+02 0.0056 23.8 6.1 59 101-160 190-256 (499)
276 PF00398 RrnaAD: Ribosomal RNA 24.6 94 0.002 23.7 3.2 26 100-125 97-124 (262)
277 PRK10943 cold shock-like prote 24.3 79 0.0017 18.8 2.2 17 131-147 8-24 (69)
278 COG2608 CopZ Copper chaperone 24.2 1.7E+02 0.0036 17.4 4.5 44 102-147 5-48 (71)
279 PF13046 DUF3906: Protein of u 24.0 92 0.002 18.4 2.3 31 112-143 30-63 (64)
280 PRK09507 cspE cold shock prote 23.9 82 0.0018 18.7 2.2 17 131-147 8-24 (69)
281 PRK15463 cold shock-like prote 23.6 86 0.0019 18.7 2.3 17 131-147 9-25 (70)
282 cd04905 ACT_CM-PDT C-terminal 23.5 1.8E+02 0.0038 17.4 5.7 47 114-160 15-68 (80)
283 cd04880 ACT_AAAH-PDT-like ACT 23.5 1.7E+02 0.0036 17.2 5.7 47 114-160 13-66 (75)
284 PRK06737 acetolactate synthase 23.0 1.9E+02 0.0042 17.7 6.4 58 102-161 6-67 (76)
285 cd04879 ACT_3PGDH-like ACT_3PG 22.9 1.5E+02 0.0033 16.4 5.6 34 112-145 11-45 (71)
286 CHL00030 rpl23 ribosomal prote 22.5 2E+02 0.0044 18.3 3.9 33 103-135 21-54 (93)
287 PRK05738 rplW 50S ribosomal pr 22.4 2E+02 0.0043 18.2 3.9 32 103-134 22-54 (92)
288 COG5470 Uncharacterized conser 22.3 2.3E+02 0.0049 18.3 4.6 40 116-155 24-70 (96)
289 KOG0862|consensus 22.3 83 0.0018 23.5 2.3 15 136-150 107-121 (216)
290 PRK14998 cold shock-like prote 21.9 98 0.0021 18.7 2.3 17 131-147 6-22 (73)
291 PHA02754 hypothetical protein; 21.9 1.8E+02 0.0038 16.9 4.0 23 115-137 21-43 (67)
292 PF01782 RimM: RimM N-terminal 21.9 1.6E+02 0.0035 17.8 3.4 26 20-46 53-78 (84)
293 TIGR02381 cspD cold shock doma 21.7 1E+02 0.0022 18.2 2.3 17 131-147 6-22 (68)
294 COG1308 EGD2 Transcription fac 21.5 2E+02 0.0044 19.4 3.8 32 110-161 81-112 (122)
295 cd04902 ACT_3PGDH-xct C-termin 21.4 1.7E+02 0.0038 16.6 5.8 51 110-160 9-64 (73)
296 PF08383 Maf_N: Maf N-terminal 21.3 77 0.0017 16.2 1.4 10 147-156 24-33 (35)
297 PF06099 Phenol_hyd_sub: Pheno 20.7 78 0.0017 18.4 1.5 16 130-146 11-26 (59)
298 PF14882 GHL12: Hypothetical g 20.6 83 0.0018 17.8 1.6 15 144-158 39-53 (53)
No 1
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.8e-35 Score=243.22 Aligned_cols=177 Identities=58% Similarity=0.882 Sum_probs=152.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC--CCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP--DAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~--~~~~~~~~~ 78 (184)
|++||+.||+|.+|+++..++|+|||+|.+.++|..|++.|||..+.|++|+|.+++......++++.. +....+++.
T Consensus 293 L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~ 372 (481)
T TIGR01649 293 LFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYS 372 (481)
T ss_pred HHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccccccc
Confidence 689999999999999998888999999999999999999999999999999999998776654443221 222346677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccCC---CceEEEEeCCHHHHHHH
Q psy17274 79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPKD---RKMALLQLDSIEEAITA 154 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~~---~~~afV~f~~~~~A~~A 154 (184)
.+..+|+..+...+..++.+|+.+|||+|||.++|+++|+++|+.||. .|..+++++.. +++|||+|++.++|.+|
T Consensus 373 ~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~A 452 (481)
T TIGR01649 373 SSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEA 452 (481)
T ss_pred CCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHH
Confidence 777777777776666777889999999999999999999999999993 28889988644 68999999999999999
Q ss_pred HHHhcCeecCCCC------eEEEEecCccc
Q psy17274 155 LIQMHNHQLSEQS------HLRVSFSKSNI 178 (184)
Q Consensus 155 i~~lng~~i~g~~------~l~v~~~~~~~ 178 (184)
+..|||+.|.| + .|+|+||++++
T Consensus 453 l~~ln~~~l~~-~~~~~~~~lkv~fs~~~~ 481 (481)
T TIGR01649 453 LIALNHHQLNE-PNGSAPYHLKVSFSTSRI 481 (481)
T ss_pred HHHhcCCccCC-CCCCccceEEEEeccCCC
Confidence 99999999999 5 49999999763
No 2
>KOG1190|consensus
Probab=100.00 E-value=8.7e-35 Score=223.62 Aligned_cols=178 Identities=69% Similarity=1.069 Sum_probs=171.0
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
||.||+.||+|.+|+|+.+++..|+|+|.++..|+-|++.|+|..++|++|+|.+|++..+.+|++++++.+..+||..+
T Consensus 315 LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~s 394 (492)
T KOG1190|consen 315 LFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNS 394 (492)
T ss_pred HHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
+.+||..|+++++..++||+.+|++.|+|++++||+|+.+|..-|+.|.-.+++++++.+|.+++++.|+|..|+-.|++
T Consensus 395 pLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 395 PLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred chhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhcccccc
Confidence 99999999999999999999999999999999999999999999977777888888899999999999999999999999
Q ss_pred eecCCCCeEEEEecCccc
Q psy17274 161 HQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 161 ~~i~g~~~l~v~~~~~~~ 178 (184)
+.+++.+.||||||++.+
T Consensus 475 h~lgen~hlRvSFSks~i 492 (492)
T KOG1190|consen 475 HYLGENHHLRVSFSKSTI 492 (492)
T ss_pred ccCCCCceEEEEeecccC
Confidence 999886799999999763
No 3
>KOG1456|consensus
Probab=100.00 E-value=8.3e-32 Score=205.36 Aligned_cols=178 Identities=30% Similarity=0.486 Sum_probs=163.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCCCCCCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEGQPDAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~~~~~~~~~~~~ 78 (184)
||+|||.||+|.+|++|+.+.|.|+|++.|..+.++|++.||+..++|.+|.|++|++..+.. |....+++++++||+
T Consensus 305 lFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys 384 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYS 384 (494)
T ss_pred hhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcc
Confidence 799999999999999999999999999999999999999999999999999999999887753 344567789999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHH
Q psy17274 79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITAL 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai 155 (184)
.+.++||..|+..+++++++|+++|++.|.|..+||+.|..+|...+....+|+|++-. ...|.+||++.++|.+||
T Consensus 385 ~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal 464 (494)
T KOG1456|consen 385 GSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEAL 464 (494)
T ss_pred cccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998667889998722 367899999999999999
Q ss_pred HHhcCeecCCC-----CeEEEEecCccc
Q psy17274 156 IQMHNHQLSEQ-----SHLRVSFSKSNI 178 (184)
Q Consensus 156 ~~lng~~i~g~-----~~l~v~~~~~~~ 178 (184)
..||+++|.+. .+|++.||.+++
T Consensus 465 ~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 465 MKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred HHhccccccCCCCCCCeeeeeeeccccc
Confidence 99999999875 479999998764
No 4
>KOG0148|consensus
Probab=100.00 E-value=3.1e-32 Score=199.83 Aligned_cols=160 Identities=18% Similarity=0.356 Sum_probs=133.5
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.+-|.+||+|.+.+|++ +++||+||.|.+.++|++||+.|||..+.+|.|+-.|+.-+...+-. ...
T Consensus 79 lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~-------~~l 151 (321)
T KOG0148|consen 79 LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG-------KPL 151 (321)
T ss_pred HHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCC-------CCc
Confidence 457899999999999998 58999999999999999999999999999999999998743321100 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai 155 (184)
.|.. ..+...+.++++||+|++..+||++|++.|++|| .|..|+|++ .+|+|||.|++.|.|.+||
T Consensus 152 tfde------------V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG-~I~EVRvFk-~qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 152 TFDE------------VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG-PIQEVRVFK-DQGYAFVRFETKEAAAHAI 217 (321)
T ss_pred cHHH------------HhccCCCCCceEEeCCcCccccHHHHHHhcccCC-cceEEEEec-ccceEEEEecchhhHHHHH
Confidence 0000 0111222578899999999999999999999999 999999995 8999999999999999999
Q ss_pred HHhcCeecCCCCeEEEEecCccccccc
Q psy17274 156 IQMHNHQLSEQSHLRVSFSKSNIQDIR 182 (184)
Q Consensus 156 ~~lng~~i~g~~~l~v~~~~~~~~~~~ 182 (184)
..|||.+|+| +.++++|.|.....++
T Consensus 218 v~mNntei~G-~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 218 VQMNNTEIGG-QLVRCSWGKEGDDGIN 243 (321)
T ss_pred HHhcCceeCc-eEEEEeccccCCCCCC
Confidence 9999999999 7999999998866554
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.98 E-value=5.7e-31 Score=216.57 Aligned_cols=171 Identities=23% Similarity=0.343 Sum_probs=132.4
Q ss_pred ChhhhccCCCeeEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNK-KDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|++||+|.+|.+++.. .++|||+|.+.++|.+|++.|||..++| ++|+|+|++...+.+.+..... +||
T Consensus 113 L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s----~dy 188 (481)
T TIGR01649 113 LYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDS----RDY 188 (481)
T ss_pred HHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCC----CCC
Confidence 67899999999999998743 4799999999999999999999999975 5899999987665442221110 000
Q ss_pred CCCCC-----------------------------C----------------CCC-------C--CC----------CCCC
Q psy17274 78 TASPL-----------------------------H----------------RFK-------K--PG----------SKNF 93 (184)
Q Consensus 78 ~~~~~-----------------------------~----------------~~~-------~--~~----------~~~~ 93 (184)
+.+.. . +.. . +. ....
T Consensus 189 t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
T TIGR01649 189 TNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYG 268 (481)
T ss_pred cCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccC
Confidence 00000 0 000 0 00 0000
Q ss_pred CCCCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 94 QNIYPPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 94 ~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
....+++++|||+|||+ .+|+++|+++|++|| .|.+|+++.+.+++|||+|.+.++|..|+..|||..|.| ++|+|+
T Consensus 269 ~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG-~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g-~~l~v~ 346 (481)
T TIGR01649 269 PAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG-NVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFG-KPLRVC 346 (481)
T ss_pred CCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEE
Confidence 12245788999999997 699999999999999 999999997778999999999999999999999999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 99765
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3e-30 Score=203.00 Aligned_cols=141 Identities=18% Similarity=0.324 Sum_probs=122.6
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|+++|+.||+|++|+|+. .++|||||+|.++++|++|++.|||..+.+++|+|.+++.....
T Consensus 124 L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~------------- 190 (346)
T TIGR01659 124 LYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGES------------- 190 (346)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccc-------------
Confidence 678999999999999986 35799999999999999999999999999999999987621100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
...++|||.|||..+|+++|+++|++|| .|..++|..+ .+++|||+|++.++
T Consensus 191 ----------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG-~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 191 ----------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG-QIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred ----------------------cccceeEEeCCCCcccHHHHHHHHHhcC-CEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 0245699999999999999999999999 9999998763 25899999999999
Q ss_pred HHHHHHHhcCeecCCC-CeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQ-SHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~ 177 (184)
|.+||+.||+..+.+. ++|+|.+++..
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999998763 48999998754
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.8e-29 Score=207.46 Aligned_cols=152 Identities=13% Similarity=0.228 Sum_probs=124.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||+|.+|+++. .++|||||+|.++++|++|++.|||..+.|++|+|.++.......+ ..
T Consensus 124 Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~---------~~ 194 (612)
T TIGR01645 124 IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQP---------II 194 (612)
T ss_pred HHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccc---------cc
Confidence 568999999999999976 3789999999999999999999999999999999985431111000 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
.... ......++|||+|||+.+++++|+++|+.|| .|.++++.+. .+|+|||+|++.++
T Consensus 195 -------~~~~--------~~~~~~~rLfVgnLp~~vteedLk~lFs~FG-~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 195 -------DMVQ--------EEAKKFNRIYVASVHPDLSETDIKSVFEAFG-EIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred -------cccc--------ccccccceEEeecCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 0000 0011346899999999999999999999999 9999998762 47999999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
|.+|+..|||..++| +.|+|.++..+.
T Consensus 259 A~kAI~amNg~elgG-r~LrV~kAi~pP 285 (612)
T TIGR01645 259 QSEAIASMNLFDLGG-QYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHhCCCeeCC-eEEEEEecCCCc
Confidence 999999999999999 899999988653
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.6e-28 Score=195.23 Aligned_cols=176 Identities=17% Similarity=0.272 Sum_probs=125.6
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCC-------
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKE------- 66 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~------- 66 (184)
|.++|++||.|..++++. .++|+|||+|.+.++|+.|++.|||..+.| .+|.|.++..........
T Consensus 106 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~ 185 (352)
T TIGR01661 106 LESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEA 185 (352)
T ss_pred HHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhc
Confidence 467999999999999876 257999999999999999999999999887 678888875433110000
Q ss_pred ----CCCCCCc---------------ccccC-------CCC-----------C---CCCCCCCCCC----------CCCC
Q psy17274 67 ----GQPDAGL---------------TKDYT-------ASP-----------L---HRFKKPGSKN----------FQNI 96 (184)
Q Consensus 67 ----~~~~~~~---------------~~~~~-------~~~-----------~---~~~~~~~~~~----------~~~~ 96 (184)
.....+. ...+. ... . .+...+.... ....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (352)
T TIGR01661 186 VQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAAS 265 (352)
T ss_pred ccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCC
Confidence 0000000 00000 000 0 0000000000 0000
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
...+.+|||+|||+.+++++|+++|++|| .|.+++|+.+ .+|+|||+|++.++|..||..|||..++| |.|+|
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG-~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-r~i~V 343 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFG-AVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-RVLQV 343 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC-eEEEE
Confidence 11345799999999999999999999999 9999999863 37999999999999999999999999999 89999
Q ss_pred EecCccc
Q psy17274 172 SFSKSNI 178 (184)
Q Consensus 172 ~~~~~~~ 178 (184)
+|.....
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9987654
No 9
>KOG0117|consensus
Probab=99.96 E-value=2.9e-28 Score=189.58 Aligned_cols=172 Identities=21% Similarity=0.356 Sum_probs=128.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEccCccc----cCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISKHQAV----QLPKEGQPD 70 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~~~~~----~~~~~~~~~ 70 (184)
|.-||++-|+|-++++|. .++|||||.|++.++|+.||+.||+.++. |+.|.|+.|-..+. .+|+....+
T Consensus 100 LvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~ke 179 (506)
T KOG0117|consen 100 LVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKE 179 (506)
T ss_pred hHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHH
Confidence 457999999999999998 47999999999999999999999999996 89999998765543 123322110
Q ss_pred ------------C------CcccccCCCC--------CC------------------------CCCCCCCCCCCCCCCCC
Q psy17274 71 ------------A------GLTKDYTASP--------LH------------------------RFKKPGSKNFQNIYPPS 100 (184)
Q Consensus 71 ------------~------~~~~~~~~~~--------~~------------------------~~~~~~~~~~~~~~~~~ 100 (184)
. .+..+...++ ++ .+..|...........-
T Consensus 180 eIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~V 259 (506)
T KOG0117|consen 180 EILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKV 259 (506)
T ss_pred HHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhe
Confidence 0 0000000000 00 00011110000111245
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++|||.||+.++|++.|+.+|++|| .|++|+.+ +.+|||+|.+.++|.+||+.|||+.|+| ..|.|+++|++
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G-~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG-~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFG-KVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDG-SPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhcc-ceEEeecc---cceeEEeecchHHHHHHHHHhcCceecC-ceEEEEecCCh
Confidence 7899999999999999999999999 99999755 5699999999999999999999999999 69999999987
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=7.6e-28 Score=191.31 Aligned_cols=142 Identities=18% Similarity=0.301 Sum_probs=122.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|+++|++||+|.+|++++ .++|||||+|.++++|.+|++.|||..+.|++|.|++++.....
T Consensus 20 l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~------------- 86 (352)
T TIGR01661 20 IRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS------------- 86 (352)
T ss_pred HHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc-------------
Confidence 678999999999999987 26799999999999999999999999999999999988621100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
....+|||+|||..+++++|+++|++|| .|..+++..+ .+++|||+|++.++
T Consensus 87 ----------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 87 ----------------------IKGANLYVSGLPKTMTQHELESIFSPFG-QIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred ----------------------cccceEEECCccccCCHHHHHHHHhccC-CEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 0245699999999999999999999999 8988888652 36899999999999
Q ss_pred HHHHHHHhcCeecCCC-CeEEEEecCccc
Q psy17274 151 AITALIQMHNHQLSEQ-SHLRVSFSKSNI 178 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~~ 178 (184)
|..|+..|||..+.|. ++|+|.|+..+.
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999999873 478999987554
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6e-27 Score=192.09 Aligned_cols=150 Identities=20% Similarity=0.359 Sum_probs=123.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|.+|+ .|+|..+.|++|.|.++............
T Consensus 106 l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~------- 177 (457)
T TIGR01622 106 LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAAT------- 177 (457)
T ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhccc-------
Confidence 578999999999999987 36899999999999999999 59999999999999876532211100000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~ 150 (184)
. .+ ...+.+++|||+|||..+|+++|+++|++|| .|..|.+.. ..+|+|||+|.+.++
T Consensus 178 -------~---~~------~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 178 -------H---QP------GDIPNFLKLYVGNLHFNITEQELRQIFEPFG-DIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred -------c---cC------CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 0 00 0112367899999999999999999999999 999998875 236899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
|..|+..|||..|.| +.|+|.|+..
T Consensus 241 A~~A~~~l~g~~i~g-~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAG-RPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECC-EEEEEEEccC
Confidence 999999999999999 8999999763
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.8e-26 Score=193.52 Aligned_cols=141 Identities=20% Similarity=0.299 Sum_probs=122.0
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|+++|++||.|.+|++++ .++|||||+|.+.++|++|++.||+..+.|++|+|.|+..+..
T Consensus 17 L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~-------------- 82 (562)
T TIGR01628 17 LYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS-------------- 82 (562)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc--------------
Confidence 689999999999999987 3579999999999999999999999999999999998752111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEA 151 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A 151 (184)
.+.. ...+|||+|||.++++++|+++|+.|| .|..|++..+ ++|+|||+|++.++|
T Consensus 83 -------~~~~------------~~~~vfV~nLp~~~~~~~L~~~F~~~G-~i~~~~i~~~~~g~skg~afV~F~~~e~A 142 (562)
T TIGR01628 83 -------LRRS------------GVGNIFVKNLDKSVDNKALFDTFSKFG-NILSCKVATDENGKSRGYGFVHFEKEESA 142 (562)
T ss_pred -------cccc------------CCCceEEcCCCccCCHHHHHHHHHhcC-CcceeEeeecCCCCcccEEEEEECCHHHH
Confidence 0000 234699999999999999999999999 9999988752 478999999999999
Q ss_pred HHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 152 ITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 152 ~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.+|++.|||..+.| +.|.|.....
T Consensus 143 ~~Ai~~lng~~~~~-~~i~v~~~~~ 166 (562)
T TIGR01628 143 KAAIQKVNGMLLND-KEVYVGRFIK 166 (562)
T ss_pred HHHHHHhcccEecC-ceEEEecccc
Confidence 99999999999999 8999976544
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=5.6e-26 Score=187.58 Aligned_cols=173 Identities=18% Similarity=0.350 Sum_probs=124.8
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEEccCccc----cCCCCCCCC-
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMISKHQAV----QLPKEGQPD- 70 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~s~~~~~----~~~~~~~~~- 70 (184)
|.++|++||.|.+|+|++ .++|||||+|.+.++|++||+.|||..+. |+.|.|..+..... .+|...+..
T Consensus 75 L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~Teee 154 (578)
T TIGR01648 75 LVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREE 154 (578)
T ss_pred HHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHH
Confidence 578999999999999987 47899999999999999999999999986 78887776542211 011110000
Q ss_pred -----------------------CCcc-----cccCCC----------CCCC-----------CCCCCCCCCCCCCCCCC
Q psy17274 71 -----------------------AGLT-----KDYTAS----------PLHR-----------FKKPGSKNFQNIYPPSP 101 (184)
Q Consensus 71 -----------------------~~~~-----~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~ 101 (184)
.... ..|.+. ...+ +..|............+
T Consensus 155 L~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k 234 (578)
T TIGR01648 155 ILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVK 234 (578)
T ss_pred HHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccccccccc
Confidence 0000 000000 0000 00011100111122467
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
+|||+|||.++|+++|+++|++| | .|++|+++ +++|||+|++.++|.+|++.|||..|.| +.|+|+|++++.
T Consensus 235 ~LfVgNL~~~~tee~L~~~F~~f~~G-~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~G-r~I~V~~Akp~~ 308 (578)
T TIGR01648 235 ILYVRNLMTTTTEEIIEKSFSEFKPG-KVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEG-SEIEVTLAKPVD 308 (578)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCC-ceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEEccCCC
Confidence 89999999999999999999999 9 99999765 4799999999999999999999999999 899999998753
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=4.7e-26 Score=191.10 Aligned_cols=158 Identities=20% Similarity=0.349 Sum_probs=126.2
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec----CcEEEEEEccCccccCCCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF----GKQMRVMISKHQAVQLPKEGQPDAG 72 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v~~s~~~~~~~~~~~~~~~~ 72 (184)
|.++|+.||.|.++.++. .++|+|||+|.+.++|.+|++.|+|..+. |+.|.|.++.........
T Consensus 195 L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~------- 267 (562)
T TIGR01628 195 LRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAE------- 267 (562)
T ss_pred HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHH-------
Confidence 468999999999999987 35789999999999999999999999999 999999876533221000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCH
Q psy17274 73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSI 148 (184)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~ 148 (184)
....+......+ .....+.+|||+|||+.+|+++|+++|++|| .|.+++++.+ ++|+|||+|.+.
T Consensus 268 ~~~~~~~~~~~~----------~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G-~i~~~~i~~d~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 268 LRRKFEELQQER----------KMKAQGVNLYVKNLDDTVTDEKLRELFSECG-EITSAKVMLDEKGVSRGFGFVCFSNP 336 (562)
T ss_pred HHhhHHhhhhhh----------hcccCCCEEEEeCCCCccCHHHHHHHHHhcC-CeEEEEEEECCCCCcCCeEEEEeCCH
Confidence 000000000000 0111466799999999999999999999999 9999999763 379999999999
Q ss_pred HHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 149 EEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 149 ~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++|.+|+..|||..++| ++|.|.|+...
T Consensus 337 ~~A~~A~~~~~g~~~~g-k~l~V~~a~~k 364 (562)
T TIGR01628 337 EEANRAVTEMHGRMLGG-KPLYVALAQRK 364 (562)
T ss_pred HHHHHHHHHhcCCeeCC-ceeEEEeccCc
Confidence 99999999999999999 89999999865
No 15
>KOG0145|consensus
Probab=99.94 E-value=2.6e-26 Score=168.23 Aligned_cols=145 Identities=19% Similarity=0.332 Sum_probs=126.0
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|..||+..|+|+++++++ .+-||+||-|.+++||++|+..|||..+..+.|+|.|+++....+
T Consensus 58 ~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~I------------ 125 (360)
T KOG0145|consen 58 LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSI------------ 125 (360)
T ss_pred HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhh------------
Confidence 357999999999999998 367999999999999999999999999999999999998332211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
....|||++||.++|..||.++|++|| .|..-+|+.+ ++|.|||.|+..++
T Consensus 126 -----------------------k~aNLYvSGlPktMtqkelE~iFs~fG-rIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 126 -----------------------KDANLYVSGLPKTMTQKELEQIFSPFG-RIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred -----------------------cccceEEecCCccchHHHHHHHHHHhh-hhhhhhhhhhcccceecceeEEEecchhH
Confidence 234599999999999999999999999 7766666542 48999999999999
Q ss_pred HHHHHHHhcCeecCCC-CeEEEEecCcccccc
Q psy17274 151 AITALIQMHNHQLSEQ-SHLRVSFSKSNIQDI 181 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~-~~l~v~~~~~~~~~~ 181 (184)
|.+||+.|||+.-.|+ .+|.|.|+..+.+..
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999999999999886 589999998885544
No 16
>KOG4206|consensus
Probab=99.93 E-value=7e-25 Score=157.97 Aligned_cols=172 Identities=19% Similarity=0.386 Sum_probs=132.0
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-CCC----CCC--
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-EGQ----PDA-- 71 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-~~~----~~~-- 71 (184)
||.||++||.|.+|..++ ..+|+|||.|.+.+.|..|+..|+|+.|+|++++|+|++.+.--..+ ++. +..
T Consensus 30 L~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~ 109 (221)
T KOG4206|consen 30 LYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKIN 109 (221)
T ss_pred HHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccc
Confidence 688999999999999887 57999999999999999999999999999999999999866432211 110 000
Q ss_pred -------CcccccCCCCC--CCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEE
Q psy17274 72 -------GLTKDYTASPL--HRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMAL 142 (184)
Q Consensus 72 -------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~af 142 (184)
+.-.+...... ++...|... .....+|+.+|++.|||..++.+.|..+|.+|. ....|++++..++.||
T Consensus 110 ~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~-g~keir~i~~~~~iAf 187 (221)
T KOG4206|consen 110 GEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFP-GFKEIRLIPPRSGIAF 187 (221)
T ss_pred cccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHHHHHHhhCc-ccceeEeccCCCceeE
Confidence 00000000000 000001000 123356889999999999999999999999999 7889999987889999
Q ss_pred EEeCCHHHHHHHHHHhcCeecC-CCCeEEEEecC
Q psy17274 143 LQLDSIEEAITALIQMHNHQLS-EQSHLRVSFSK 175 (184)
Q Consensus 143 V~f~~~~~A~~Ai~~lng~~i~-g~~~l~v~~~~ 175 (184)
|+|.+...|..|...++|..|- . +.++|+|++
T Consensus 188 ve~~~d~~a~~a~~~lq~~~it~~-~~m~i~~a~ 220 (221)
T KOG4206|consen 188 VEFLSDRQASAAQQALQGFKITKK-NTMQITFAK 220 (221)
T ss_pred EecchhhhhHHHhhhhccceeccC-ceEEecccC
Confidence 9999999999999999999997 5 799999986
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.8e-24 Score=179.63 Aligned_cols=167 Identities=13% Similarity=0.169 Sum_probs=122.3
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|+.||.|..+.++. .++|||||+|.+.++|..|++.|||..+.|++|.|+++.................
T Consensus 312 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~-- 389 (509)
T TIGR01642 312 IKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAP-- 389 (509)
T ss_pred HHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccc--
Confidence 568999999999999876 2689999999999999999999999999999999999864432211100000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC--C--------CHHHHHHHHHhcCCceeEEEEccC--------C
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS--V--------TEDELKEAFTEKGFTVKGFKFFPK--------D 137 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~--~--------t~~~l~~~F~~~G~~v~~v~v~~~--------~ 137 (184)
..... ... ..........|+++|+|.|+... + ..++|+++|++|| .|..|.|... +
T Consensus 390 -~~~~~-~~~---~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G-~v~~v~i~~~~~~~~~~~~ 463 (509)
T TIGR01642 390 -VTLLA-KAL---SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG-PLINIVIPRPNGDRNSTPG 463 (509)
T ss_pred -ccccc-ccc---hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC-CeeEEEeeccCcCCCcCCC
Confidence 00000 000 00000111237889999999632 1 1368999999999 9999988642 2
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 138 RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 138 ~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.|+|||+|++.++|.+|+..|||..++| +.|.|+|...
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~~~g-r~v~~~~~~~ 501 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRKFND-RVVVAAFYGE 501 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEeCH
Confidence 4789999999999999999999999999 8999999653
No 18
>KOG0109|consensus
Probab=99.93 E-value=8.9e-26 Score=167.50 Aligned_cols=134 Identities=25% Similarity=0.437 Sum_probs=122.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|..||++||+|+.+.|+ |.||||+.++...|..||+.|+|..+.|..|.|+-|+.+..
T Consensus 19 lr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk------------------- 76 (346)
T KOG0109|consen 19 LRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK------------------- 76 (346)
T ss_pred HHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-------------------
Confidence 45799999999999997 58999999999999999999999999999999998873211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
++++|+|+|+.+.++.++|+..|++|| .|..++|.+ +++||+|+..++|..|+..|||
T Consensus 77 ------------------~stkl~vgNis~tctn~ElRa~fe~yg-pviecdivk---dy~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 77 ------------------ASTKLHVGNISPTCTNQELRAKFEKYG-PVIECDIVK---DYAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred ------------------CccccccCCCCccccCHHHhhhhcccC-Cceeeeeec---ceeEEEEeeccchHHHHhcccc
Confidence 567899999999999999999999999 888898864 8999999999999999999999
Q ss_pred eecCCCCeEEEEecCcccc
Q psy17274 161 HQLSEQSHLRVSFSKSNIQ 179 (184)
Q Consensus 161 ~~i~g~~~l~v~~~~~~~~ 179 (184)
+.+.| ++++|..|.++++
T Consensus 135 ~~~~g-k~m~vq~stsrlr 152 (346)
T KOG0109|consen 135 TEFQG-KRMHVQLSTSRLR 152 (346)
T ss_pred ccccc-ceeeeeeeccccc
Confidence 99999 8999999988754
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.1e-24 Score=176.92 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=113.0
Q ss_pred CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCC
Q psy17274 9 GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKP 88 (184)
Q Consensus 9 G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
+.|..+.+. ..+|||||+|.++++|..|| .|||..|.|++|.|...+.... .+...........+.. ......+
T Consensus 212 ~~v~~~~~~-~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ 285 (509)
T TIGR01642 212 KHVSSVNIN-KEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIP-VPQITPEVSQKNPDDN---AKNVEKL 285 (509)
T ss_pred CceEEEEEC-CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCC-ccccCCCCCCCCCccc---ccccccc
Confidence 456666654 46899999999999999999 6999999999999975442211 0100000000000000 0000000
Q ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeec
Q psy17274 89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQL 163 (184)
Q Consensus 89 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i 163 (184)
........+.++|||+|||..+|+++|+++|+.|| .|..+.++.. ++|+|||+|.+.++|..|+..|||..+
T Consensus 286 --~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 286 --VNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG-DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred --cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 00001112467899999999999999999999999 8999988752 479999999999999999999999999
Q ss_pred CCCCeEEEEecCcc
Q psy17274 164 SEQSHLRVSFSKSN 177 (184)
Q Consensus 164 ~g~~~l~v~~~~~~ 177 (184)
+| +.|+|.++...
T Consensus 363 ~~-~~l~v~~a~~~ 375 (509)
T TIGR01642 363 GD-NKLHVQRACVG 375 (509)
T ss_pred CC-eEEEEEECccC
Confidence 99 89999998654
No 20
>KOG0131|consensus
Probab=99.92 E-value=9e-25 Score=152.19 Aligned_cols=142 Identities=18% Similarity=0.309 Sum_probs=118.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
||+||-+.|+|.+|++.+ ..+|||||+|.+.|+|+-|++-||...++|++|+|..+.......
T Consensus 26 l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl------------ 93 (203)
T KOG0131|consen 26 LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNL------------ 93 (203)
T ss_pred HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccc------------
Confidence 689999999999999877 378999999999999999999999999999999998654111100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~ 150 (184)
.-+..|||+||.+.++|..|.++|+.||+-+..-++++ +.+++|||.|++.+.
T Consensus 94 ----------------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 94 ----------------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred ----------------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 02346999999999999999999999993222223333 346899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+..|+..|||+.+.+ +++.|+|+...
T Consensus 152 sd~ai~s~ngq~l~n-r~itv~ya~k~ 177 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCN-RPITVSYAFKK 177 (203)
T ss_pred HHHHHHHhccchhcC-CceEEEEEEec
Confidence 999999999999999 89999998765
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.8e-23 Score=170.46 Aligned_cols=175 Identities=18% Similarity=0.253 Sum_probs=124.2
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-------CCC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-------EGQ 68 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-------~~~ 68 (184)
|.++|++||.|.+|.++. .++|||||+|.+.++|..|++.|||..+.|++|.|.|+......... ...
T Consensus 203 l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~ 282 (457)
T TIGR01622 203 LRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQ 282 (457)
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhcccccc
Confidence 568999999999999886 35799999999999999999999999999999999997532211000 000
Q ss_pred CCC-----------------------Cc-c----------cccCCCCCCCCCCC------C--------CCCCCCCCCCC
Q psy17274 69 PDA-----------------------GL-T----------KDYTASPLHRFKKP------G--------SKNFQNIYPPS 100 (184)
Q Consensus 69 ~~~-----------------------~~-~----------~~~~~~~~~~~~~~------~--------~~~~~~~~~~~ 100 (184)
... +. . .............| . .........++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (457)
T TIGR01622 283 QQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLAT 362 (457)
T ss_pred ccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCC
Confidence 000 00 0 00000000000000 0 00000122467
Q ss_pred CEEEEeCCCCCCC----------HHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274 101 PTLHLSNIPASVT----------EDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL 169 (184)
Q Consensus 101 ~~l~v~nlp~~~t----------~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l 169 (184)
++|+|.||....+ .+||++.|++|| .|+.|.|. +...|.+||+|.+.++|..|+..|||..++| +.|
T Consensus 363 ~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G-~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~g-r~i 440 (457)
T TIGR01622 363 TCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG-GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGG-KMI 440 (457)
T ss_pred cEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC-CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCC-eEE
Confidence 8999999965444 368999999999 99999887 4557999999999999999999999999999 899
Q ss_pred EEEecCcc
Q psy17274 170 RVSFSKSN 177 (184)
Q Consensus 170 ~v~~~~~~ 177 (184)
.+.|....
T Consensus 441 ~~~~~~~~ 448 (457)
T TIGR01622 441 TAAFVVND 448 (457)
T ss_pred EEEEEcHH
Confidence 99998654
No 22
>KOG0145|consensus
Probab=99.91 E-value=5.4e-24 Score=156.07 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=126.6
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccC---CC-----
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQL---PK----- 65 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~---~~----- 65 (184)
|-++|++||.|..-+|+. -++|.+||.|...++|+.||..|||..-.| .+|.|+|+..+.... +.
T Consensus 144 lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~ 223 (360)
T KOG0145|consen 144 LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQ 223 (360)
T ss_pred HHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhc
Confidence 357999999998877776 378999999999999999999999998887 579999987553211 00
Q ss_pred -CCCCCCCcccc------cCCCC-----CCCCCCCCC--------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Q psy17274 66 -EGQPDAGLTKD------YTASP-----LHRFKKPGS--------KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKG 125 (184)
Q Consensus 66 -~~~~~~~~~~~------~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 125 (184)
+.....+...+ +.... ..||.+-.- .+.........+|||.||.++.+|.-|+++|.+||
T Consensus 224 sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFG 303 (360)
T KOG0145|consen 224 SPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFG 303 (360)
T ss_pred CccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence 00000000000 00000 011111000 00001111357899999999999999999999999
Q ss_pred CceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 126 FTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 126 ~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.|..|+|+++ =||+|||.|.+.++|..||..|||+.+++ |.|+|+|....
T Consensus 304 -Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 -AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-RVLQVSFKTNK 358 (360)
T ss_pred -ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc-eEEEEEEecCC
Confidence 9999999973 17999999999999999999999999999 99999997653
No 23
>KOG0144|consensus
Probab=99.91 E-value=3.7e-24 Score=166.27 Aligned_cols=142 Identities=17% Similarity=0.330 Sum_probs=120.5
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCce-ecC--cEEEEEEccCccccCCCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLR-VFG--KQMRVMISKHQAVQLPKEGQPDAG 72 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~v~~s~~~~~~~~~~~~~~~~ 72 (184)
|..+|++||.|.+|.+++ .++|||||.|.+.++|.+|+.+|++.. +.| .+|.|+|+......+
T Consensus 51 lr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~--------- 121 (510)
T KOG0144|consen 51 LRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI--------- 121 (510)
T ss_pred HHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc---------
Confidence 467999999999999998 378999999999999999999999964 445 667777664221110
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCH
Q psy17274 73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSI 148 (184)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~ 148 (184)
+..+.|||+-|+..+||.|++++|++|| .|++|.|.+. +||+|||.|.+.
T Consensus 122 -------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG-~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 122 -------------------------VEERKLFVGMLSKQCTENEVREIFSRFG-HIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred -------------------------ccchhhhhhhccccccHHHHHHHHHhhC-ccchhhheecccccccceeEEEEehH
Confidence 1355799999999999999999999999 9999999873 489999999999
Q ss_pred HHHHHHHHHhcCe-ecCCC-CeEEEEecCcc
Q psy17274 149 EEAITALIQMHNH-QLSEQ-SHLRVSFSKSN 177 (184)
Q Consensus 149 ~~A~~Ai~~lng~-~i~g~-~~l~v~~~~~~ 177 (184)
+.|..||+.|||. .+.|+ -+|.|.|+..+
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 9999999999997 56775 59999999876
No 24
>KOG1190|consensus
Probab=99.91 E-value=2.5e-23 Score=160.72 Aligned_cols=175 Identities=25% Similarity=0.352 Sum_probs=133.6
Q ss_pred ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|++||.|.+|..+. +..-+|+|+|.+++.|+.|...|+|+.++. |.|+|.||+.....+..... ..+||
T Consensus 167 LHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynnd----kSRDy 242 (492)
T KOG1190|consen 167 LHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNND----KSRDY 242 (492)
T ss_pred HHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecccc----ccccc
Confidence 689999999999987666 455669999999999999999999998874 78999999876554322211 11222
Q ss_pred CCCCCC-------------------------CCCCCC-----CCCCCCCCCC--CCEEEEeCCC-CCCCHHHHHHHHHhc
Q psy17274 78 TASPLH-------------------------RFKKPG-----SKNFQNIYPP--SPTLHLSNIP-ASVTEDELKEAFTEK 124 (184)
Q Consensus 78 ~~~~~~-------------------------~~~~~~-----~~~~~~~~~~--~~~l~v~nlp-~~~t~~~l~~~F~~~ 124 (184)
++.... ....|. ......+..+ +.+|.|.||. +.+|.+.|..+|+-|
T Consensus 243 Tnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY 322 (492)
T KOG1190|consen 243 TNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY 322 (492)
T ss_pred cCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh
Confidence 221100 000000 0011122223 4788899986 799999999999999
Q ss_pred CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccccc
Q psy17274 125 GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDI 181 (184)
Q Consensus 125 G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~~~ 181 (184)
| .|.+|+|+.+.+..|.|+|.+...|.-|+.+|+|..+.| ++|+|+|||.+-+.+
T Consensus 323 G-dVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~g-k~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 323 G-DVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYG-KKLRVTLSKHTNVQL 377 (492)
T ss_pred c-ceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecC-ceEEEeeccCccccC
Confidence 9 999999998888999999999999999999999999999 899999999885544
No 25
>KOG0123|consensus
Probab=99.90 E-value=3.8e-23 Score=163.77 Aligned_cols=134 Identities=22% Similarity=0.344 Sum_probs=120.8
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
||++|+++|+|.+|++.+ .+-|||||.|.++++|++||+.||...+.|++++|.|+..+
T Consensus 15 l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd------------------- 75 (369)
T KOG0123|consen 15 LFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD------------------- 75 (369)
T ss_pred HHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------------
Confidence 689999999999999887 46799999999999999999999999999999999998611
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHH
Q psy17274 79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITAL 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai 155 (184)
|+ .+||.||+++++..+|.++|+.|| +|.+|++..+. +|+ ||+|++.++|.+|+
T Consensus 76 --------------------~~-~~~i~nl~~~~~~~~~~d~f~~~g-~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 76 --------------------PS-LVFIKNLDESIDNKSLYDTFSEFG-NILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred --------------------Cc-eeeecCCCcccCcHHHHHHHHhhc-CeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 11 199999999999999999999999 99999998643 678 99999999999999
Q ss_pred HHhcCeecCCCCeEEEEecCcc
Q psy17274 156 IQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 156 ~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+.|||..+.| ++|.|......
T Consensus 133 ~~~ng~ll~~-kki~vg~~~~~ 153 (369)
T KOG0123|consen 133 EKLNGMLLNG-KKIYVGLFERK 153 (369)
T ss_pred HHhcCcccCC-CeeEEeeccch
Confidence 9999999999 89999765543
No 26
>KOG0127|consensus
Probab=99.89 E-value=7.6e-22 Score=157.37 Aligned_cols=175 Identities=19% Similarity=0.240 Sum_probs=124.3
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCC------------
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLP------------ 64 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~------------ 64 (184)
|..+|+.||.|..|.|.+ ...|||||+|....+|..|++.+||..+.||+|.|.|+-.......
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~ 213 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKA 213 (678)
T ss_pred HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhc
Confidence 567999999999999887 3579999999999999999999999999999999999754322100
Q ss_pred --C----C-CCCCC------------Cccc--cc-----C---C-----CCCCCC-----CCCCCC--CC--CCCCCCCC
Q psy17274 65 --K----E-GQPDA------------GLTK--DY-----T---A-----SPLHRF-----KKPGSK--NF--QNIYPPSP 101 (184)
Q Consensus 65 --~----~-~~~~~------------~~~~--~~-----~---~-----~~~~~~-----~~~~~~--~~--~~~~~~~~ 101 (184)
. + ..++. .+-. |. . . +..... ..+... +. .....-..
T Consensus 214 ~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~ 293 (678)
T KOG0127|consen 214 VKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGK 293 (678)
T ss_pred cchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccc
Confidence 0 0 00000 0000 00 0 0 000000 000000 10 11112348
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHh-----cC-eecCCCCeEE
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQM-----HN-HQLSEQSHLR 170 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~l-----ng-~~i~g~~~l~ 170 (184)
+|||.|||+++|+++|.++|++|| .|..+.+.. .++|.|||.|.+..+|..||... .| ..|.| |.|+
T Consensus 294 tVFvRNL~fD~tEEel~~~fskFG-~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G-R~Lk 371 (678)
T KOG0127|consen 294 TVFVRNLPFDTTEEELKEHFSKFG-EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG-RLLK 371 (678)
T ss_pred eEEEecCCccccHHHHHHHHHhhc-cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec-cEEe
Confidence 999999999999999999999999 998887765 24799999999999999999987 45 78899 8999
Q ss_pred EEecCcc
Q psy17274 171 VSFSKSN 177 (184)
Q Consensus 171 v~~~~~~ 177 (184)
|..+-.+
T Consensus 372 v~~Av~R 378 (678)
T KOG0127|consen 372 VTLAVTR 378 (678)
T ss_pred eeeccch
Confidence 9987543
No 27
>KOG0127|consensus
Probab=99.88 E-value=5.6e-22 Score=158.11 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=126.2
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCC-CCCCCCCCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLP-KEGQPDAGLT 74 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~-~~~~~~~~~~ 74 (184)
|-++||..|+|..+-+.. .++||+||.|+-.||+++|+...++..|.|+.|.|.+++....... ..+... ..-
T Consensus 22 L~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~-~ve 100 (678)
T KOG0127|consen 22 LEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENK-AVE 100 (678)
T ss_pred HHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccch-hhh
Confidence 457899999999988776 3689999999999999999999999999999999999875433210 000000 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHH
Q psy17274 75 KDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEE 150 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~ 150 (184)
+ +...+. .......-|-..|.|.|||..+.+.+|+.+|+.|| .|..|.|..+. .|+|||+|.+..+
T Consensus 101 K--------~~~q~~-~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G-~V~Ei~IP~k~dgklcGFaFV~fk~~~d 170 (678)
T KOG0127|consen 101 K--------PIEQKR-PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG-KVVEIVIPRKKDGKLCGFAFVQFKEKKD 170 (678)
T ss_pred c--------ccccCC-cchhhccCccceEEeecCCcccCcHHHHHHHhhcc-eEEEEEcccCCCCCccceEEEEEeeHHH
Confidence 0 000000 00001122467899999999999999999999999 99999775421 5899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
|..|++.+||..|.| |+|-|.|+-+.
T Consensus 171 A~~Al~~~N~~~i~g-R~VAVDWAV~K 196 (678)
T KOG0127|consen 171 AEKALEFFNGNKIDG-RPVAVDWAVDK 196 (678)
T ss_pred HHHHHHhccCceecC-ceeEEeeeccc
Confidence 999999999999999 99999998654
No 28
>KOG0110|consensus
Probab=99.87 E-value=1.6e-21 Score=159.54 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=123.8
Q ss_pred ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAG 72 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~ 72 (184)
|..+|.++|.|.++.|... +.|||||+|.++++|+.|++.|+|+.+.|..|.|++|...... ..+
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~-----~~g-- 604 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAS-----TVG-- 604 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccc-----ccc--
Confidence 3578999999999987651 3499999999999999999999999999999999999721110 000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCC
Q psy17274 73 LTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDS 147 (184)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~ 147 (184)
+ . .. .....+.|+|.|+|+..+-.+++.+|..|| .+..|+|..+ ++|+|||+|-+
T Consensus 605 --K-------~--~~--------~kk~~tKIlVRNipFeAt~rEVr~LF~aFG-qlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 605 --K-------K--KS--------KKKKGTKILVRNIPFEATKREVRKLFTAFG-QLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred --c-------c--cc--------cccccceeeeeccchHHHHHHHHHHHhccc-ceeeeccchhhcchhhccceeeeccC
Confidence 0 0 00 001356799999999999999999999999 9999998753 37899999999
Q ss_pred HHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 148 IEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 148 ~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+.+|..|+.+|.++.+.| |.|.+.|++..
T Consensus 665 ~~ea~nA~~al~STHlyG-RrLVLEwA~~d 693 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYG-RRLVLEWAKSD 693 (725)
T ss_pred cHHHHHHHHhhcccceec-hhhheehhccc
Confidence 999999999999999999 89999999875
No 29
>KOG0124|consensus
Probab=99.86 E-value=3.2e-21 Score=147.56 Aligned_cols=150 Identities=14% Similarity=0.257 Sum_probs=119.8
Q ss_pred hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274 2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD 76 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~ 76 (184)
..-|.+||+|++|.+.+ .++|||||+|+-+|.|+.|++.|||..+.||.|+|.... +. |.... ..|
T Consensus 131 R~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs--Nm--pQAQp-----iID 201 (544)
T KOG0124|consen 131 RRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS--NM--PQAQP-----IID 201 (544)
T ss_pred HhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC--CC--cccch-----HHH
Confidence 45699999999999877 479999999999999999999999999999999997332 11 11000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHH
Q psy17274 77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEA 151 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A 151 (184)
.-. -+. ..-..|||..+.++++|+||+..|+-|| +|..|.+-+ ..+|||||+|.+..+.
T Consensus 202 ~vq--------eeA-------k~fnRiYVaSvHpDLSe~DiKSVFEAFG-~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 202 MVQ--------EEA-------KKFNRIYVASVHPDLSETDIKSVFEAFG-EIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred HHH--------HHH-------HhhheEEeeecCCCccHHHHHHHHHhhc-ceeeEEeeccCCCCCccceeeEEeccccch
Confidence 000 000 0234699999999999999999999999 999999865 3479999999999999
Q ss_pred HHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 152 ITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 152 ~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+|+..||=..++| .-|+|.-+-.+
T Consensus 266 ~eAiasMNlFDLGG-QyLRVGk~vTP 290 (544)
T KOG0124|consen 266 SEAIASMNLFDLGG-QYLRVGKCVTP 290 (544)
T ss_pred HHHhhhcchhhccc-ceEecccccCC
Confidence 99999999999999 59999765444
No 30
>KOG1456|consensus
Probab=99.86 E-value=6.3e-20 Score=140.69 Aligned_cols=171 Identities=21% Similarity=0.318 Sum_probs=132.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec-C-cEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF-G-KQMRVMISKHQAVQLPKEGQPDAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g-~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
||.+..+.|+|.+|-|+++..-+|+|+|++.+.|++|.+.|||..++ | ++|+|+|++...+.+-+...+ .+||+
T Consensus 139 ly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D----twDyT 214 (494)
T KOG1456|consen 139 LYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD----TWDYT 214 (494)
T ss_pred hhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc----ccccc
Confidence 68889999999999999988889999999999999999999999997 4 789999998775533211110 01111
Q ss_pred CCCC-----------CCC-----------------------------CCCCCC-----------CCCCCCCCCCEEEEeC
Q psy17274 79 ASPL-----------HRF-----------------------------KKPGSK-----------NFQNIYPPSPTLHLSN 107 (184)
Q Consensus 79 ~~~~-----------~~~-----------------------------~~~~~~-----------~~~~~~~~~~~l~v~n 107 (184)
.+.. .|. -.|.++ ....-..++.++-|.+
T Consensus 215 lp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyG 294 (494)
T KOG1456|consen 215 LPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYG 294 (494)
T ss_pred CCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEe
Confidence 0000 000 000000 0012233678999999
Q ss_pred CC-CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 108 IP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 108 lp-~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
|. ..+.-+.|.++|..|| .|++|++++...+.|.|++.+...-++|+..||+..+.| .+|.|.+|+..
T Consensus 295 Ldh~k~N~drlFNl~ClYG-NV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG-~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 295 LDHGKMNCDRLFNLFCLYG-NVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFG-GKLNVCVSKQN 363 (494)
T ss_pred ccccccchhhhhhhhhhcC-ceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCcccc-ceEEEeecccc
Confidence 98 5777889999999999 999999998778999999999999999999999999999 79999999976
No 31
>KOG0147|consensus
Probab=99.82 E-value=2.8e-20 Score=148.61 Aligned_cols=153 Identities=21% Similarity=0.339 Sum_probs=122.3
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|+++|+..|.|.+|+++. .++|.|||+|.+.++...|| .|.|..+.|.+|.|..+........
T Consensus 196 L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a----------- 263 (549)
T KOG0147|consen 196 LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAA----------- 263 (549)
T ss_pred HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHH-----------
Confidence 689999999999999887 47899999999999999999 9999999999999986542211100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
..++.- .+ .....|-..|||+||..++++++|+.+|++|| .|+.|.+..+ .+|+|||+|.+.++
T Consensus 264 --~~s~a~---~~-----k~~~~p~~rl~vgnLHfNite~~lr~ifepfg-~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 264 --NASPAL---QG-----KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG-KIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred --hccccc---cc-----cccccchhhhhhcccccCchHHHHhhhccCcc-cceeeeeccccccccccCcceEEEecHHH
Confidence 000000 00 00011333399999999999999999999999 9999988764 37999999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
|.+|+..|||..+-| +.|+|+.....
T Consensus 333 ar~a~e~lngfelAG-r~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAG-RLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecC-ceEEEEEeeee
Confidence 999999999999999 99999876544
No 32
>KOG0123|consensus
Probab=99.82 E-value=1.1e-19 Score=144.05 Aligned_cols=146 Identities=16% Similarity=0.315 Sum_probs=121.4
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|+.||+|++|+++. .++|| ||+|++.++|.+|++.|||..+.|++|.|...............
T Consensus 93 ~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~--------- 162 (369)
T KOG0123|consen 93 LYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE--------- 162 (369)
T ss_pred HHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------
Confidence 689999999999999998 47899 99999999999999999999999999999866533322110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAIT 153 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~ 153 (184)
... .-..+++.|++...+++.|.+.|+.+| .|.++.++++ .+++|||+|+++++|..
T Consensus 163 ---~~~---------------~~t~v~vk~~~~~~~~~~l~~~f~~~g-~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~ 223 (369)
T KOG0123|consen 163 ---YKK---------------RFTNVYVKNLEEDSTDEELKDLFSAYG-SITSVAVMRDSIGKSKGFGFVNFENPEDAKK 223 (369)
T ss_pred ---hhh---------------hhhhhheeccccccchHHHHHhhcccC-cceEEEEeecCCCCCCCccceeecChhHHHH
Confidence 000 234588999999999999999999999 9999999873 37899999999999999
Q ss_pred HHHHhcCeecCCCCeEEEEecCc
Q psy17274 154 ALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 154 Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
|+..|||..+++ ..+.|.-+..
T Consensus 224 av~~l~~~~~~~-~~~~V~~aqk 245 (369)
T KOG0123|consen 224 AVETLNGKIFGD-KELYVGRAQK 245 (369)
T ss_pred HHHhccCCcCCc-cceeeccccc
Confidence 999999999998 6887765543
No 33
>KOG0105|consensus
Probab=99.81 E-value=1.7e-18 Score=121.32 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=112.0
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
+-+||.+||.|..|.+-. ....||||+|+++.+|+.||..-+|..+.|+.|+|++++..... ....++..+-.
T Consensus 23 ieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s-----~~~~G~y~ggg 97 (241)
T KOG0105|consen 23 IEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSS-----SDRRGSYSGGG 97 (241)
T ss_pred HHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcc-----cccccccCCCC
Confidence 358999999999998533 35789999999999999999999999999999999998743211 10011110000
Q ss_pred C---CCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274 79 A---SPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 79 ~---~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai 155 (184)
. ....+...|.. ...-.+.|++||++-+|+||++++.+.| .|+...+.+. +.+.|+|...|+...|+
T Consensus 98 rgGgg~gg~rgppsr-------rSe~RVvVsGLp~SgSWQDLKDHmReaG-dvCfadv~rD--g~GvV~~~r~eDMkYAv 167 (241)
T KOG0105|consen 98 RGGGGGGGRRGPPSR-------RSEYRVVVSGLPPSGSWQDLKDHMREAG-DVCFADVQRD--GVGVVEYLRKEDMKYAV 167 (241)
T ss_pred CCCCCCCcccCCccc-------ccceeEEEecCCCCCchHHHHHHHHhhC-Ceeeeeeecc--cceeeeeeehhhHHHHH
Confidence 0 00000001110 0234689999999999999999999999 9998888743 59999999999999999
Q ss_pred HHhcCeecCC
Q psy17274 156 IQMHNHQLSE 165 (184)
Q Consensus 156 ~~lng~~i~g 165 (184)
..|+.+.+..
T Consensus 168 r~ld~~~~~s 177 (241)
T KOG0105|consen 168 RKLDDQKFRS 177 (241)
T ss_pred HhhccccccC
Confidence 9999987754
No 34
>KOG0146|consensus
Probab=99.79 E-value=1.9e-19 Score=132.78 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.++.|||..||....+.||.++|-+|| .|.+.+|+- .+|.+|||.|+++.+|..||..|||.+|+= ++|+|.+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFG-hivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM-KRLKVQL 361 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFG-HIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM-KRLKVQL 361 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhcccc-ceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh-hhhhhhh
Confidence 568899999999999999999999999 999998875 247899999999999999999999999999 9999998
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
.+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 7765
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=2.3e-17 Score=137.10 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=61.3
Q ss_pred CCCEEEEeCCC--CCCC---HHHHHHHHHhcCCceeEEEEccCCC---------ceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 99 PSPTLHLSNIP--ASVT---EDELKEAFTEKGFTVKGFKFFPKDR---------KMALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 99 ~~~~l~v~nlp--~~~t---~~~l~~~F~~~G~~v~~v~v~~~~~---------~~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
++++|.+.|+= ..+. ++|+++.|++|| .|.+|.|..... +..||+|.+.++|.+|+..|||+.++
T Consensus 513 ~S~vVvL~NMv~~~eldedl~eDV~eEC~K~G-~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~ 591 (612)
T TIGR01645 513 RSNVIVLRNMVTPQDIDEFLEGEIREECGKFG-VVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFG 591 (612)
T ss_pred CCCEEEEeCCCChHHhHHHHHHHHHHHhhcCc-eeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeEC
Confidence 57899999983 2332 467888899999 999998886322 23699999999999999999999999
Q ss_pred CCCeEEEEec
Q psy17274 165 EQSHLRVSFS 174 (184)
Q Consensus 165 g~~~l~v~~~ 174 (184)
| |.|+..|=
T Consensus 592 G-R~V~a~~y 600 (612)
T TIGR01645 592 G-RTVVAEAY 600 (612)
T ss_pred C-eEEEEEEc
Confidence 9 89999874
No 36
>KOG0144|consensus
Probab=99.78 E-value=5.2e-19 Score=137.81 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.+..|||.+||-+.-+.+|-..|.+|| .|.+.+++-+ ++.++||.|++..+|..||..|||.+|++ ++|+|..
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG-~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~-KrlkVQl 500 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFG-GVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGS-KRLKVQL 500 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhcccc-ceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcc-ccceEEe
Confidence 456799999999999999999999999 8988888753 36899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+-
T Consensus 501 k~~~~ 505 (510)
T KOG0144|consen 501 KRDRN 505 (510)
T ss_pred eeccC
Confidence 87653
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.8e-18 Score=119.61 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.+++|||+|||..+||++|+++|++|| .|.++++..+ .+++|||+|++.++|..|++.|||..|.| +.|+|++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-r~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFG-DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-RHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEe
Confidence 567899999999999999999999999 9999998752 47999999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 38
>KOG0147|consensus
Probab=99.76 E-value=2.1e-17 Score=132.33 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=122.5
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC------CCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL------PKEGQP 69 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~------~~~~~~ 69 (184)
|..+|++||.|..|.++. ..+||+||+|.+.++|.+|++.|||+++.|+.|+|..-....... ......
T Consensus 295 lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~ 374 (549)
T KOG0147|consen 295 LRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDED 374 (549)
T ss_pred HhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchh
Confidence 346899999999999887 368999999999999999999999999999999987643221100 000000
Q ss_pred C-CCc-------ccc------cCC-----------------------CCCCCCCCCCCC-CCCCCCCCCCEEEEeCCCC-
Q psy17274 70 D-AGL-------TKD------YTA-----------------------SPLHRFKKPGSK-NFQNIYPPSPTLHLSNIPA- 110 (184)
Q Consensus 70 ~-~~~-------~~~------~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~~l~v~nlp~- 110 (184)
+ .+. ... ... ....+...+... .......|+.++.+.|+-.
T Consensus 375 d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdp 454 (549)
T KOG0147|consen 375 DRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDP 454 (549)
T ss_pred hccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCc
Confidence 0 000 000 000 000000000000 0111225788999999843
Q ss_pred -CCC--------HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 111 -SVT--------EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 111 -~~t--------~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+.| .+|+.+-|++|| .|..|.|.+++.|+.||.|.+.+.|..|+..|||.++.| +.|...|-...
T Consensus 455 stete~n~d~eI~edV~Eec~k~g-~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~g-r~Ita~~~~~~ 528 (549)
T KOG0147|consen 455 STETEPNWDQEIREDVIEECGKHG-KVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAG-RMITAKYLPLE 528 (549)
T ss_pred ccccCcchhhHHHHHHHHHHHhcC-CeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhcc-ceeEEEEeehh
Confidence 223 578889999999 999999988777999999999999999999999999999 99999986543
No 39
>KOG0110|consensus
Probab=99.75 E-value=2.9e-17 Score=134.81 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=120.9
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCC-CCCCcccccCCC
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQ-PDAGLTKDYTAS 80 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (184)
..+|..||+|.+|. +....-.|+|+|.++.+|..|...|....+...+|.++|+..+....+.... ............
T Consensus 403 t~~F~~fG~i~rvl-lp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~ 481 (725)
T KOG0110|consen 403 TEAFLRFGEIGRVL-LPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEEN 481 (725)
T ss_pred HHHhhcccccceee-cCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccC
Confidence 46899999999994 5444455999999999999999999999999999999998755443211100 000000000000
Q ss_pred CCCCCC----------CCCCCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--------C
Q psy17274 81 PLHRFK----------KPGSKNF-----QNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--------D 137 (184)
Q Consensus 81 ~~~~~~----------~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--------~ 137 (184)
+..+.. .+..... .....+++ ||+.||+...|.++|..+|...| .|..+.|... +
T Consensus 482 ~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G-~VlS~~I~kkkd~~~k~lS 559 (725)
T KOG0110|consen 482 PSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQG-TVLSIEISKKKDPANKYLS 559 (725)
T ss_pred cceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcC-eEEEEEEeccccccccccc
Confidence 000000 0000000 01111222 99999999999999999999999 8999987642 1
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 138 RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 138 ~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.|+|||+|.++++|..|+..|+|+.+.| |.|.|.++.
T Consensus 560 mGfgFVEF~~~e~A~~a~k~lqgtvldG-H~l~lk~S~ 596 (725)
T KOG0110|consen 560 MGFGFVEFAKPESAQAALKALQGTVLDG-HKLELKISE 596 (725)
T ss_pred cceeEEEecCHHHHHHHHHHhcCceecC-ceEEEEecc
Confidence 3999999999999999999999999999 999999998
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.4e-17 Score=101.97 Aligned_cols=66 Identities=27% Similarity=0.550 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
|||+|||+++|+++|+++|++|| .|..+.+..+ .+++|||+|++.++|..|++.|||..++| +.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~-~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG-KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING-RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS-TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh-hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc-cCcC
Confidence 79999999999999999999999 9999998873 36899999999999999999999999999 7886
No 41
>KOG1457|consensus
Probab=99.72 E-value=1.2e-16 Score=115.13 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=107.4
Q ss_pred ChhhhccCCCeeEEEEeeCC------CCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCccccCCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNK------KDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQAVQLPKEGQPDA 71 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~~~~~~~~~~~~~ 71 (184)
||+||..|---+...+-..+ +..|||.|.+..+|..|+.+|||..|. ++.|+|++++..+....+.+....
T Consensus 51 iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP 130 (284)
T KOG1457|consen 51 IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTP 130 (284)
T ss_pred HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCC
Confidence 57888888666655433322 268999999999999999999999995 799999999866543222111100
Q ss_pred CcccccC-------------------CC-C--CCC-----------CCC-----------CCCCCC----CC---CCCCC
Q psy17274 72 GLTKDYT-------------------AS-P--LHR-----------FKK-----------PGSKNF----QN---IYPPS 100 (184)
Q Consensus 72 ~~~~~~~-------------------~~-~--~~~-----------~~~-----------~~~~~~----~~---~~~~~ 100 (184)
++...+. .+ + ... +.. |..... .. ....+
T Consensus 131 ~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~ac 210 (284)
T KOG1457|consen 131 GSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARAC 210 (284)
T ss_pred CCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhh
Confidence 0000000 00 0 000 000 000000 00 00134
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.+|||.||.++++|++|+.+|+.|. .....+|.. .+-..||++|++.+.|..||..|+|..|-.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~-gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYP-GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCC-CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceecc
Confidence 6899999999999999999999997 444444432 235689999999999999999999998854
No 42
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.72 E-value=3.8e-17 Score=96.02 Aligned_cols=56 Identities=21% Similarity=0.463 Sum_probs=51.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|+++|++||+|.+|.+..+++++|||+|.+.++|+.|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998766799999999999999999999999999999999986
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=2.9e-16 Score=123.95 Aligned_cols=78 Identities=17% Similarity=0.347 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
...++|||.|||+++|+++|+++|+.|| .|+.|+|+.+ ++++|||+|.+.++|.+|++.|||..+.+ ++|+|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G-~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-r~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIG-PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN-KRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC-ceeeee
Confidence 3578999999999999999999999999 8999998753 36899999999999999999999999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|++..
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 44
>KOG0148|consensus
Probab=99.68 E-value=1.3e-16 Score=118.01 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=73.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
-.++|+.|.+.++.++|++-|.+|| +|..++|++ ++||+|||.|-..++|+.||..|||.+|++ |.||-.|+.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFG-evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-R~IRTNWAT 140 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFG-EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-RTIRTNWAT 140 (321)
T ss_pred eeEEehhcchhcchHHHHHHhcccc-ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc-ceeeccccc
Confidence 3588999999999999999999999 999999997 468999999999999999999999999999 999999998
Q ss_pred ccccccc
Q psy17274 176 SNIQDIR 182 (184)
Q Consensus 176 ~~~~~~~ 182 (184)
+.+.+.|
T Consensus 141 RKp~e~n 147 (321)
T KOG0148|consen 141 RKPSEMN 147 (321)
T ss_pred cCccccC
Confidence 8875544
No 45
>KOG0106|consensus
Probab=99.67 E-value=1.2e-16 Score=116.51 Aligned_cols=149 Identities=19% Similarity=0.307 Sum_probs=112.9
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCC
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASP 81 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
-.+|..||.|.+|.+ +.|++||+|.+..+|..|+..|||..|.|-.+.+++++.......... .+ +-. +.
T Consensus 19 E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~---~g---~r~-~~ 88 (216)
T KOG0106|consen 19 ERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPR---GG---DRR-SD 88 (216)
T ss_pred HHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCC---CC---Ccc-ch
Confidence 368999999999986 469999999999999999999999999998899998874332210000 00 000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
......|. .....|.|.|++..+.+++|.+.|+++| .+..... ..+.|||+|.+.++|..|+..|+|.
T Consensus 89 ~~~~~~p~--------~s~~r~~~~~~~~r~~~qdl~d~~~~~g-~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~ 156 (216)
T KOG0106|consen 89 SRRYRPPS--------RTHFRLIVRNLSLRVSWQDLKDHFRPAG-EVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGK 156 (216)
T ss_pred hhccCCcc--------cccceeeeccchhhhhHHHHhhhhcccC-CCchhhh---hccccceeehhhhhhhhcchhccch
Confidence 00111111 1346688999999999999999999999 7744432 5689999999999999999999999
Q ss_pred ecCCCCeEEEEe
Q psy17274 162 QLSEQSHLRVSF 173 (184)
Q Consensus 162 ~i~g~~~l~v~~ 173 (184)
.+.+ +.|++.+
T Consensus 157 ~~~~-~~l~~~~ 167 (216)
T KOG0106|consen 157 KLNG-RRISVEK 167 (216)
T ss_pred hhcC-ceeeecc
Confidence 9999 7999843
No 46
>KOG0125|consensus
Probab=99.67 E-value=1.8e-16 Score=119.92 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
-+.|||+|+|+..-|.||+.+|++|| .|.+|+|+-+ +||+|||+|++++||.+|-+.|||..+.| |+|.|.-+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG-~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG-RkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFG-KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG-RKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhC-ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec-eEEEEeccch
Confidence 36799999999999999999999999 9999999854 47999999999999999999999999999 9999998876
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 6
No 47
>KOG0114|consensus
Probab=99.67 E-value=6.1e-16 Score=98.71 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
++.|||.|||..+|.+++.++|.+|| .|..|+|-. ..+|.|||.|++..+|.+|+.+|+|+.+.+ +.|.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg-~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~-ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYG-TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN-RYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhccc-ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC-ceEEEEecC
Confidence 67899999999999999999999999 899998853 348999999999999999999999999999 899988754
No 48
>KOG0107|consensus
Probab=99.66 E-value=3.8e-16 Score=108.67 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
-.+.|||+||+..+++.||..+|..|| .+..|.|-.+..|+|||+|+++.||..|+..|||..|.| ..|+|.+++-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG-~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG-~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYG-PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICG-SRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcC-cceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccC-ceEEEEeecCCc
Confidence 356799999999999999999999999 999999887778999999999999999999999999999 699999988664
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=113.72 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.++|||+|||+.+|+++|+++|+.|| .|.+|+|..+ .+++|||+|.++++|..|+. |||..|.| +.|+|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G-~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g-r~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG-DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD-QSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC-ceEEEEeccC
Confidence 56899999999999999999999999 9999999764 36999999999999999995 99999999 8999999863
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=1.4e-15 Score=93.30 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=59.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
|+|+|||+++++++|+++|+.+| .|..+.+..+. +++|||+|.+.++|.+|+..++|..++| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g-~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g-~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG-PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG-RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS-BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC-EEcC
Confidence 78999999999999999999999 99999998743 6899999999999999999999999999 7875
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.63 E-value=2.2e-15 Score=88.48 Aligned_cols=56 Identities=34% Similarity=0.565 Sum_probs=51.6
Q ss_pred HHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 117 LKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 117 l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
|+++|++|| .|.++.+.++.++.|||+|.+.++|..|+..|||..++| ++|+|+||
T Consensus 1 L~~~f~~fG-~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g-~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG-EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNG-RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS--EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETT-EEEEEEEE
T ss_pred ChHHhCCcc-cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEC
Confidence 689999999 999999987556999999999999999999999999999 89999996
No 52
>KOG0122|consensus
Probab=99.61 E-value=6.2e-15 Score=107.65 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
....+|-|.||+.+++|++|++||.+|| .|.++.|..+ .+|+|||.|.+.++|.+||..|||+-++. =.|+|.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg-~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~-LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFG-PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN-LILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccC-ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce-EEEEEE
Confidence 3567899999999999999999999999 8999988763 37999999999999999999999999999 799999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99975
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=1.1e-14 Score=121.10 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCC
Q psy17274 30 ESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIP 109 (184)
Q Consensus 30 ~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 109 (184)
-.++|.+||..++|..+........+....... . ...| ...++|||+|||
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~--------------------~-~~~p---------~~~~~lFVgnLp 67 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGW--------------------S-GVQP---------GRGCEVFVGKIP 67 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcc--------------------c-CCCC---------CCCCEEEeCCCC
Confidence 357899999999998775554444444311110 0 0001 035789999999
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecC-CCCeEEEEecC
Q psy17274 110 ASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLS-EQSHLRVSFSK 175 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~-g~~~l~v~~~~ 175 (184)
.+++|++|+++|++|| .|..++|+. .++++|||+|.+.++|.+||+.|||..+. | +.|.|..+.
T Consensus 68 ~~~tEd~L~~~F~~~G-~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G-r~l~V~~S~ 136 (578)
T TIGR01648 68 RDLYEDELVPLFEKAG-PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG-RLLGVCISV 136 (578)
T ss_pred CCCCHHHHHHHHHhhC-CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC-ccccccccc
Confidence 9999999999999999 999999875 35799999999999999999999999996 6 788777654
No 54
>KOG4212|consensus
Probab=99.59 E-value=4.2e-14 Score=111.01 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
..++|+|.|||.++||+.|++-|..|| .|..+.|+.+.+..+.|.|.++++|+.|+..|||..+.| |.|+|.|
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G-~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~G-r~I~V~y 607 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIG-HVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDG-RNIKVTY 607 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhcc-ceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccC-ceeeeee
Confidence 456799999999999999999999999 999999987677778999999999999999999999999 8999988
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=1.6e-14 Score=88.03 Aligned_cols=69 Identities=32% Similarity=0.533 Sum_probs=63.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
+|+|.|||..+++++|+++|++|| .|..+.+.... +++|||+|.+.++|..|+..++|..+.| +.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g-~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~-~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG-PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG-RPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC-CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC-EEEeeC
Confidence 489999999999999999999999 89999887643 5999999999999999999999999999 798873
No 56
>KOG0105|consensus
Probab=99.55 E-value=9.7e-15 Score=102.62 Aligned_cols=77 Identities=18% Similarity=0.392 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.++.|||+|||.++-+.++.++|.+|| .|..|.+... ...+|||+|+++.+|..||..-+|+.++| +.|+|.|.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg-~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg-~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYG-RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG-CRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhc-ceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc-ceEEEEeccC
Confidence 367899999999999999999999999 9999987532 25799999999999999999999999999 7999999875
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 57
>KOG1548|consensus
Probab=99.55 E-value=1.3e-13 Score=105.33 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=116.9
Q ss_pred hhhhccCCCeeE--------EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCC
Q psy17274 2 FSLTGVYGDVLR--------VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEG 67 (184)
Q Consensus 2 ~~lF~~yG~V~~--------v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~ 67 (184)
.++|++||-|.+ |++.+ .-+|-|++.|-..+++..|++.|++..|.|++|+|+.++.+.... +...
T Consensus 152 ~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k 231 (382)
T KOG1548|consen 152 AEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKK 231 (382)
T ss_pred HHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccc
Confidence 468999999864 67776 257889999999999999999999999999999999887553211 0000
Q ss_pred CC-CCCcccccCCCCCCCCC-CCCCCCCCCCCCCCCEEEEeCCCC----CCC-------HHHHHHHHHhcCCceeEEEEc
Q psy17274 68 QP-DAGLTKDYTASPLHRFK-KPGSKNFQNIYPPSPTLHLSNIPA----SVT-------EDELKEAFTEKGFTVKGFKFF 134 (184)
Q Consensus 68 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~nlp~----~~t-------~~~l~~~F~~~G~~v~~v~v~ 134 (184)
.. .....+.+.......+. .|.. .........++|.+.|+-. .-+ .++|++-+++|| .|.+|.|.
T Consensus 232 ~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G-~v~~vvv~ 309 (382)
T KOG1548|consen 232 EKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFG-QVRKVVVY 309 (382)
T ss_pred cccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhC-CcceEEEe
Confidence 00 00000000000000000 0000 0000111457888888842 222 566777799999 89999888
Q ss_pred cCC-CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 135 PKD-RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 135 ~~~-~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+. .|.+.|.|.+.++|..||+.|+|+.++| |.|..+.....
T Consensus 310 d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg-Rql~A~i~DG~ 352 (382)
T KOG1548|consen 310 DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG-RQLTASIWDGK 352 (382)
T ss_pred ccCCCceeEEEeCChHHHHHHHHHhcCeeecc-eEEEEEEeCCc
Confidence 543 5899999999999999999999999999 89988775544
No 58
>KOG0124|consensus
Probab=99.54 E-value=3.6e-13 Score=103.76 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=58.8
Q ss_pred CCCEEEEeCC--CCCCC---HHHHHHHHHhcCCceeEEEEccCCCc---------eEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 99 PSPTLHLSNI--PASVT---EDELKEAFTEKGFTVKGFKFFPKDRK---------MALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 99 ~~~~l~v~nl--p~~~t---~~~l~~~F~~~G~~v~~v~v~~~~~~---------~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
.++++.+.|+ |.+++ +.++.+.|++|| .|.+|.|.....+ .-||+|....++.+|+..|||+.++
T Consensus 445 ~S~VivLRNMV~P~DiDe~LegEi~EECgKfG-~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFg 523 (544)
T KOG0124|consen 445 ESTVIVLRNMVDPKDIDEDLEGEITEECGKFG-AVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFG 523 (544)
T ss_pred cCcEEEEeccCChhhhhhHHHHHHHHHHhccc-ceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceec
Confidence 5788889997 45665 678899999999 9999988753222 3699999999999999999999999
Q ss_pred CCCeEEEE
Q psy17274 165 EQSHLRVS 172 (184)
Q Consensus 165 g~~~l~v~ 172 (184)
| +++...
T Consensus 524 G-r~VvAE 530 (544)
T KOG0124|consen 524 G-RKVVAE 530 (544)
T ss_pred C-ceeehh
Confidence 9 777543
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.2e-13 Score=84.64 Aligned_cols=70 Identities=31% Similarity=0.578 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+|+|+|||..+++++|+++|+.+| .|..+.+.... +++|+|+|.+.++|..|+..+++..+.| +.++|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g-~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG-KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG-RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC-CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEeC
Confidence 489999999999999999999999 99999888643 6899999999999999999999999999 8999875
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=4.5e-14 Score=112.43 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCH--HHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSI--EEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~--~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.+-.|||+||++++++++|+.+|++|| .|.+|.|++ ..||||||+|.+. .++.+||..|||..+.| +.|+|.-++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFG-sVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG-R~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMG-TVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG-GRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC-ceeEEeecc
Confidence 356799999999999999999999999 999999986 2489999999987 78999999999999999 899999887
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 64
No 61
>KOG4205|consensus
Probab=99.53 E-value=3.3e-14 Score=109.78 Aligned_cols=144 Identities=12% Similarity=0.224 Sum_probs=112.6
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.+-|++||+|.++.+|+ +++|++||+|++++....++. ..-..+.|+.|.++.+.......
T Consensus 23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~------------ 89 (311)
T KOG4205|consen 23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQT------------ 89 (311)
T ss_pred HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccCccccc------------
Confidence 456789999999999998 578999999999999999984 44556888888887554211110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~ 150 (184)
+.. ....++.+||++||.+++++++++.|.+|| .|..+.++. +.++++||.|++.+.
T Consensus 90 --------~~~---------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g-~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 90 --------KVG---------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFG-KVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred --------ccc---------cccceeEEEecCcCCCCchHHHhhhhhccc-eeEeeEEeecccccccccceeeEeccccc
Confidence 000 001467899999999999999999999999 888776654 247999999999887
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
..+++. ...+.+.| +.+.|--+-+.
T Consensus 152 Vdkv~~-~~f~~~~g-k~vevkrA~pk 176 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNG-KKVEVKRAIPK 176 (311)
T ss_pred cceecc-cceeeecC-ceeeEeeccch
Confidence 777765 78999999 88888766554
No 62
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=102.15 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.+.+|+|+||++.+|+++|+++|+.|| .|.+|++.+.. +++|||+|.++++|..|+ .|||..|.+ ++|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G-~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d-~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCG-AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD-QRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcC-CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC-ceEEEEeCc
Confidence 356899999999999999999999999 99999998743 579999999999999999 599999999 699888643
No 63
>KOG0121|consensus
Probab=99.52 E-value=4.7e-14 Score=93.51 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.+.+|||+||...++|+.|.+||+++| .|.+|.+-. ...|++||+|.+.++|..|+..+||+.+.. ++|++.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG-~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd-r~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCG-DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD-RPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhcc-chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc-cceeeec
Confidence 578999999999999999999999999 898885422 124899999999999999999999999999 8999987
Q ss_pred c
Q psy17274 174 S 174 (184)
Q Consensus 174 ~ 174 (184)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 64
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.6e-13 Score=83.26 Aligned_cols=66 Identities=29% Similarity=0.552 Sum_probs=59.8
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 105 LSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 105 v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
|+|||..+++++|+++|++|| .|..+.+.... +++|||+|.+.++|..|+..|+|..++| +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG-KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG-RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC-CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-cEEEeC
Confidence 578999999999999999999 89999887632 5799999999999999999999999999 798874
No 65
>KOG4207|consensus
Probab=99.48 E-value=7.8e-14 Score=99.67 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
-..|.|-||.+.++.++|+.+|++|| .|-.|.|.. ..+|+|||.|.+..||+.|+++|+|..++| +.|+|+++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG-~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg-RelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYG-RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG-RELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhC-cccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc-ceeeehhh
Confidence 46799999999999999999999999 998887754 347999999999999999999999999999 89999998
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+..
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 754
No 66
>KOG0113|consensus
Probab=99.46 E-value=7e-13 Score=99.53 Aligned_cols=81 Identities=15% Similarity=0.313 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
.|-+||||.-|++.++|.+|+..|+.|| .|.+|.++. +++|||||+|++..+...|-+.-+|..|+| +.|-|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG-~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg-rri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYG-PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG-RRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcC-cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC-cEEEEE
Confidence 4789999999999999999999999999 999999986 358999999999999999999999999999 999999
Q ss_pred ecCccccc
Q psy17274 173 FSKSNIQD 180 (184)
Q Consensus 173 ~~~~~~~~ 180 (184)
+-...++.
T Consensus 177 vERgRTvk 184 (335)
T KOG0113|consen 177 VERGRTVK 184 (335)
T ss_pred eccccccc
Confidence 98877654
No 67
>KOG0111|consensus
Probab=99.46 E-value=4.1e-14 Score=102.03 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
..++|||++|...++|.-|..-|-+|| .|..|.+.. +.+++|||+|+..|||..||..||+..+.| |.|+|.|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG-DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G-rtirVN~ 86 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG-DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG-RTIRVNL 86 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc-chhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc-eeEEEee
Confidence 357899999999999999999999999 999998753 458999999999999999999999999999 9999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
+++.-.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998743
No 68
>KOG4206|consensus
Probab=99.44 E-value=4.6e-13 Score=97.10 Aligned_cols=79 Identities=27% Similarity=0.440 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKE----AFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~----~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
|+.||||.||++.+.-++|+. +|++|| .|..|.... +.+|.|||.|.+.+.|..|+..|+|..+.| +.++|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG-~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg-K~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFG-KILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG-KPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhC-CeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC-chhhee
Confidence 566999999999999999998 999999 998888775 348999999999999999999999999999 999999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|+++...
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9998743
No 69
>KOG0120|consensus
Probab=99.44 E-value=5.6e-13 Score=107.98 Aligned_cols=159 Identities=14% Similarity=0.211 Sum_probs=110.3
Q ss_pred hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
++.+.||.+....+.. +++||||.+|.++.....|+..|||..+.+++|.|..+-......-.... .+.. .+
T Consensus 308 Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-~~~~--~~ 384 (500)
T KOG0120|consen 308 ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-ISQS--QV 384 (500)
T ss_pred HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-cccc--cc
Confidence 4566778877776665 57999999999999999999999999999999999887644332111000 0000 01
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCceeEEEEccC--------CCc
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNI--PASVT--------EDELKEAFTEKGFTVKGFKFFPK--------DRK 139 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~~v~~v~v~~~--------~~~ 139 (184)
...+.... .....|+.+|.+.|+ |..+. -|+++.-|+.|| .|..|.+-.. +-|
T Consensus 385 ~~i~~~~~--------q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g-~v~~v~ipr~~~~~~~~~G~G 455 (500)
T KOG0120|consen 385 PGIPLLMT--------QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG-AVRSVEIPRPYPDENPVPGTG 455 (500)
T ss_pred ccchhhhc--------ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC-ceeEEecCCCCCCCCcCCCcc
Confidence 10000000 011126777887775 22222 245667799999 8888876542 246
Q ss_pred eEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 140 MALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 140 ~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
..||+|.+.+++.+|++.|+|..+.| |++..+|=
T Consensus 456 kVFVefas~ed~qrA~~~L~GrKF~n-RtVvtsYy 489 (500)
T KOG0120|consen 456 KVFVEFADTEDSQRAMEELTGRKFAN-RTVVASYY 489 (500)
T ss_pred cEEEEecChHHHHHHHHHccCceeCC-cEEEEEec
Confidence 78999999999999999999999999 89998884
No 70
>KOG0109|consensus
Probab=99.42 E-value=2.8e-13 Score=101.39 Aligned_cols=71 Identities=25% Similarity=0.411 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.|||+|||...++.+|+.+|++|| +|..+.|++ ++|||+.++...|..||..|||+.|+| ..|.|.=||++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~yg-kVlECDIvK---NYgFVHiEdktaaedairNLhgYtLhg-~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYG-KVLECDIVK---NYGFVHIEDKTAAEDAIRNLHGYTLHG-VNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhC-ceEeeeeec---ccceEEeecccccHHHHhhcccceecc-eEEEEEecccc
Confidence 499999999999999999999999 999999985 799999999999999999999999999 89999988876
No 71
>KOG0131|consensus
Probab=99.41 E-value=7.1e-13 Score=93.02 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
...+|||+||++.++++-|+++|-+.| +|.++.+.+ ..+|+|||+|.+.|+|..|++.||...+.| |+|+|.-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqag-pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg-rpIrv~k 85 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAG-PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG-RPIRVNK 85 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcC-ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC-ceeEEEe
Confidence 467899999999999999999999999 898998754 247999999999999999999999999999 9999997
Q ss_pred cC
Q psy17274 174 SK 175 (184)
Q Consensus 174 ~~ 175 (184)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 72
>KOG0107|consensus
Probab=99.40 E-value=3.5e-13 Score=93.97 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=56.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|-.+|+.||++.+|+|-.+.+|||||+|+++.+|+.|+..|||..+.|..|+|++++....
T Consensus 27 LE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 27 LERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred HHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3468999999999999999999999999999999999999999999999999999875543
No 73
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1.1e-12 Score=91.56 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|+.|++.|||..+.|++|+|+++...
T Consensus 51 L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred HHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 578999999999999886 35899999999999999999999999999999999998743
No 74
>KOG0130|consensus
Probab=99.40 E-value=9e-13 Score=88.22 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.+.+|+|.++.+..+|+++.+.|..|| +|.++.+... .+|||+|+|++.++|+.|+..|||..+-| ..|.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyG-eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~-q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYG-EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG-QNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcc-cccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC-CceeEEE
Confidence 467899999999999999999999999 9999988642 27999999999999999999999999999 5888877
Q ss_pred c
Q psy17274 174 S 174 (184)
Q Consensus 174 ~ 174 (184)
.
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 5
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=97.36 Aligned_cols=74 Identities=31% Similarity=0.509 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
..+|||+|||..+++++|+++|.+|| .|..+.+..+ .+|+|||+|.+.++|..|+..|+|..+.| +.|+|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g-~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG-PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG-RPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC-ceeEeecc
Confidence 58999999999999999999999999 8888887642 37999999999999999999999999999 89999996
Q ss_pred C
Q psy17274 175 K 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 4
No 76
>KOG0117|consensus
Probab=99.38 E-value=1.5e-11 Score=96.94 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.++.|||+.||.++.|++|..+|++.| +|-.++++.+ +||+|||.|-+.++|++|++.||++.|...+.|.|+.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG-~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIG-KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhcc-ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 577899999999999999999999999 9999999853 5899999999999999999999999996448999998
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
|-..
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7654
No 77
>KOG0132|consensus
Probab=99.34 E-value=3.2e-12 Score=106.47 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
-++||||+.|+..+++.||.++|+.|| .|.+|.++. .+++|||.|....+|.+|+.+|+++.+.+ +.|+|.|+...-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG-eiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~-k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG-EIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVAD-KTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc-cceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccc-eeeEEeeeccCC
Confidence 478999999999999999999999999 999999885 89999999999999999999999999999 899999997763
No 78
>KOG4211|consensus
Probab=99.32 E-value=3.9e-11 Score=95.65 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|.++|+.+ .|+++.+.+ +..|-|||+|.+.|++++|++ .+-..+.-+=|.|.-+.........
T Consensus 27 i~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~------------ 92 (510)
T KOG4211|consen 27 ILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVM------------ 92 (510)
T ss_pred HHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccc------------
Confidence 35778887 578877766 367999999999999999994 5666666677888766533322100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAI 152 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~ 152 (184)
+...|.+. .+..+|-+.+||.+||++||.+.|+..- .|....+++ +..+.|||+|++.+.|+
T Consensus 93 ------~~~g~~s~------~~d~vVRLRGLPfscte~dI~~FFaGL~-Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 93 ------RPGGPNSS------ANDGVVRLRGLPFSCTEEDIVEFFAGLE-IVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ------cCCCCCCC------CCCceEEecCCCccCcHHHHHHHhcCCc-ccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 00011110 1456899999999999999999999887 444322222 23589999999999999
Q ss_pred HHHHHhcCeecCCCCeEEEEecC
Q psy17274 153 TALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 153 ~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+|+. -|...|+. |-|.|--|.
T Consensus 160 ~Al~-rhre~iGh-RYIEvF~Ss 180 (510)
T KOG4211|consen 160 IALG-RHRENIGH-RYIEVFRSS 180 (510)
T ss_pred HHHH-HHHHhhcc-ceEEeehhH
Confidence 9988 47777887 788876443
No 79
>KOG0108|consensus
Probab=99.32 E-value=5e-12 Score=101.76 Aligned_cols=75 Identities=20% Similarity=0.402 Sum_probs=69.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
..+||+|+|+++++++|.++|+..| .|.++++.-+ .+|+||++|.+.++|..|+..|||..++| |+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g-~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG-PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG-RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC-ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC-ceEEeeccc
Confidence 7899999999999999999999999 8999988752 37999999999999999999999999999 899999987
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 65
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=8.3e-12 Score=76.52 Aligned_cols=57 Identities=12% Similarity=0.372 Sum_probs=48.8
Q ss_pred HHHHHHHHH----hcCCceeEEE--Ecc------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 114 EDELKEAFT----EKGFTVKGFK--FFP------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 114 ~~~l~~~F~----~~G~~v~~v~--v~~------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
+++|+++|+ +|| .|.++. +++ .++|+|||+|.+.++|.+|+..|||..+.| +.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG-~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-r~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFG-EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG-RTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcC-CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEeC
Confidence 578888888 999 898884 332 237999999999999999999999999999 899863
No 81
>KOG0126|consensus
Probab=99.31 E-value=1.5e-13 Score=96.43 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
+..+.-|||+|||+.+||.||.-+|++|| +|..|.+++ +++|+||..|++-.+..-|+..|||..|.| |.|+|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyG-e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g-RtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYG-EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG-RTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccC-ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc-eeEEe
Confidence 33566799999999999999999999999 999999987 347999999999999999999999999999 99999
Q ss_pred EecC
Q psy17274 172 SFSK 175 (184)
Q Consensus 172 ~~~~ 175 (184)
....
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 7543
No 82
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.1e-11 Score=76.02 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=46.2
Q ss_pred Chhhhc----cCCCeeEEE-Eee-------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274 1 MFSLTG----VYGDVLRVK-ILY-------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53 (184)
Q Consensus 1 L~~lF~----~yG~V~~v~-~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 53 (184)
|.++|+ +||.|.+|. +.. .++|+|||+|.+.++|.+|++.|||..+.|++|.+
T Consensus 5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 466777 999999995 332 25899999999999999999999999999999976
No 83
>KOG0125|consensus
Probab=99.28 E-value=5.6e-12 Score=95.88 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=53.3
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|..+|.+||+|.+|.|+- .+|||+||+|++++||++|-+.|+|..+.||+|+|..+.
T Consensus 113 L~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 113 LRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred HHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 568999999999999987 489999999999999999999999999999999998765
No 84
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=7.9e-12 Score=76.19 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=48.0
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMR 52 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 52 (184)
|.++|++||.|..++++.+ .+++|||+|.+.++|+.|++.|||..+.|++|+
T Consensus 15 l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 15 LRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 4689999999999999883 689999999999999999999999999999885
No 85
>KOG0149|consensus
Probab=99.27 E-value=1.3e-11 Score=89.95 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=62.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+.|||+||+..+..++|++.|++|| +|+.+.|+- ++||+|||+|.+.+.|.+|++.. +-.|+| |+--|.++.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfG-eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG-R~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFG-EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG-RKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhC-ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc-cccccchhh
Confidence 4699999999999999999999999 998888875 45899999999999999999854 456788 777666654
Q ss_pred c
Q psy17274 176 S 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 86
>KOG4212|consensus
Probab=99.26 E-value=6.4e-10 Score=87.82 Aligned_cols=170 Identities=19% Similarity=0.346 Sum_probs=114.7
Q ss_pred hhh-ccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc----CCCCCCC----
Q psy17274 3 SLT-GVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ----LPKEGQP---- 69 (184)
Q Consensus 3 ~lF-~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~----~~~~~~~---- 69 (184)
+|| ++-|+|+-|.++. +.+|+|.|+|.++|.+++|++.||..++.||+|.|+-.+..... .-+.+..
T Consensus 63 dLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~ 142 (608)
T KOG4212|consen 63 DLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGG 142 (608)
T ss_pred HHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCccccc
Confidence 444 3578888888776 57999999999999999999999999999999999865432211 0000000
Q ss_pred ------------C---------C-CcccccCC-CC---CCCCCCC--C-------------CCCCCCCCCC-CCEEEEeC
Q psy17274 70 ------------D---------A-GLTKDYTA-SP---LHRFKKP--G-------------SKNFQNIYPP-SPTLHLSN 107 (184)
Q Consensus 70 ------------~---------~-~~~~~~~~-~~---~~~~~~~--~-------------~~~~~~~~~~-~~~l~v~n 107 (184)
. . ...+|... +. ...+... . ........|| ...+||.|
T Consensus 143 ~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvan 222 (608)
T KOG4212|consen 143 GGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVAN 222 (608)
T ss_pred CcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeec
Confidence 0 0 00000000 00 0000000 0 0011122333 46789999
Q ss_pred CCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 108 IPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 108 lp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
|.+.+....|++.|.-.| .|+.|.+-- ++++++.++|..+-+|..||..|++.-+.. ++..+.+.
T Consensus 223 l~~~vg~~kL~qvfgmAG-kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~-~~~~~Rl~ 291 (608)
T KOG4212|consen 223 LDYKVGNKKLKQVFGMAG-KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD-RRMTVRLD 291 (608)
T ss_pred cccccchHHHHHHhccce-eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc-ccceeecc
Confidence 999999999999999999 898887643 357999999999999999999999866666 66666553
No 87
>KOG0153|consensus
Probab=99.26 E-value=2.6e-11 Score=92.87 Aligned_cols=74 Identities=16% Similarity=0.369 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEecCc
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~~~~ 176 (184)
.++|||++|-+.++|.+|+++|.+|| +|..+.+.+ .++.|||+|.+.+.|+.|.... |...|+| ++|+|.|+++
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyG-eirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G-~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYG-EIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVING-FRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcC-CeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecc-eEEEEEeCCC
Confidence 47899999999999999999999999 999999986 7789999999999999977654 5557799 7999999998
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=87.65 Aligned_cols=153 Identities=18% Similarity=0.310 Sum_probs=100.2
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|+++|.+||.|.+|.+.. ..+|+|||+|.+.++|..|++.++|..|.|++|.|.+... ...++.... ..
T Consensus 132 l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~--~~-- 205 (306)
T COG0724 132 LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP--ASQPRSELS--NN-- 205 (306)
T ss_pred HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc--ccccccccc--cc--
Confidence 578999999999998876 3689999999999999999999999999999999998753 000000000 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~ 150 (184)
.... ..................+++.|++...+..++...|..+| .+....+.... ....++.+.....
T Consensus 206 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 206 -LDAS----FAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG-DIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred -cchh----hhccccccccccccccceeeccccccccchhHHHHhccccc-cceeeeccCCCCCcccccccccchhHHHh
Confidence 0000 00000001111222567799999999999999999999999 77666554322 1233355555555
Q ss_pred HHHHHHHhcCeecCC
Q psy17274 151 AITALIQMHNHQLSE 165 (184)
Q Consensus 151 A~~Ai~~lng~~i~g 165 (184)
+..+.....+....+
T Consensus 280 ~~~~~~~~~~~~~~~ 294 (306)
T COG0724 280 ALESNSRGNKKKILG 294 (306)
T ss_pred hhhhhccccceeecc
Confidence 555555544444444
No 89
>KOG4207|consensus
Probab=99.21 E-value=7.9e-12 Score=89.50 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=55.8
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|..+|++||.|-+|-|.+ .++|||||.|-+..+|+.|++.|+|..+.|+.|.|++++....
T Consensus 30 LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 30 LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCC
Confidence 567999999999999887 4799999999999999999999999999999999999876544
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=99.21 E-value=1.5e-10 Score=71.42 Aligned_cols=70 Identities=26% Similarity=0.286 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCHH----HHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 102 TLHLSNIPASVTED----ELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 102 ~l~v~nlp~~~t~~----~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.|+|.|||...+.. -|++|+..+|+.|..| ..+.|+|.|.+.+.|.+|.+.|+|..+.| .+|.|+|.+.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG-~kI~v~~~~~~ 77 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFG-NKISVSFSPKN 77 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSS-S--EEESS--S
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhccccccc-ceEEEEEcCCc
Confidence 58999999988854 4667888999888776 35899999999999999999999999999 79999998544
No 91
>KOG0415|consensus
Probab=99.19 E-value=5.5e-11 Score=91.47 Aligned_cols=80 Identities=20% Similarity=0.447 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCC-----ceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274 95 NIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR-----KMALLQLDSIEEAITALIQMHNHQLSEQSHL 169 (184)
Q Consensus 95 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~-----~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l 169 (184)
...||.++|||--|.+-+|++||.-+|+.|| .|.++.|++..+ .+|||+|++.+++.+|.-.|++..|.. +.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG-~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD-rRI 311 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFG-KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD-RRI 311 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcc-cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc-ceE
Confidence 4557999999999999999999999999999 999999997432 599999999999999999999999999 899
Q ss_pred EEEecCc
Q psy17274 170 RVSFSKS 176 (184)
Q Consensus 170 ~v~~~~~ 176 (184)
+|.||.+
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9999864
No 92
>KOG4661|consensus
Probab=99.17 E-value=2.5e-10 Score=92.81 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.++.|||++|...+-..||++||++|| +|...+|+.+- +.||||+|.+..+|.+||..||-+.+.| +.|.|.-
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyG-KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG-rmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYG-KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG-RMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhc-ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc-eeeeeee
Confidence 467899999999999999999999999 99999988532 6799999999999999999999999999 8999998
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88654
No 93
>KOG0111|consensus
Probab=99.17 E-value=1.9e-11 Score=88.44 Aligned_cols=62 Identities=19% Similarity=0.440 Sum_probs=56.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ 62 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~ 62 (184)
|.+-|-+||+|.+|++.. +.+|||||+|...|+|..||+.||+.+++||.|+|.++++..+.
T Consensus 27 LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 27 LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence 567899999999999875 57999999999999999999999999999999999999876553
No 94
>KOG4660|consensus
Probab=99.16 E-value=3.8e-11 Score=97.02 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
..++.+|+|.|||.++++++|+.+|+.|| +|..|+..+..++..||+|.|+.+|+.|++.||+..|.| +.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yG-eir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~-~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYG-EIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAG-KRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhc-chhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhh-hhhcC
Confidence 34788999999999999999999999999 999998888788999999999999999999999999999 78873
No 95
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=86.96 Aligned_cols=57 Identities=11% Similarity=0.227 Sum_probs=52.0
Q ss_pred ChhhhccCCCeeEEEEeeC--CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN--KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|+.||+|.+|.+... .+|+|||+|.++++|..|+ .|||..+.|++|.|.++..
T Consensus 21 LrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 21 IKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 5789999999999999873 5799999999999999999 5999999999999998763
No 96
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.13 E-value=1.4e-10 Score=70.86 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=47.5
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMR 52 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 52 (184)
|.++|+.||.|..|.+..+ .+|+|||+|.++++|.+|++.++|..+.|++|+
T Consensus 15 l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 15 LRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 4689999999999999885 379999999999999999999999999999875
No 97
>KOG4208|consensus
Probab=99.12 E-value=3.4e-10 Score=81.16 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
....+++..+|..+.+..+...|.++|+.|.++++.+ +++|||||+|++.+.|.-|-+.||++.+.+ +-|.|.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e-~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME-HLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh-heeeeEE
Confidence 4557899999999999999999999965788888755 458999999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8765
No 98
>KOG0130|consensus
Probab=99.12 E-value=5.6e-11 Score=79.71 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=51.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
+.+.|+.||+|+.|.+-. -.+|||+|+|++.++|+.|++.|||..+.|++|.|.|+.
T Consensus 89 i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 89 IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 367899999999998754 258999999999999999999999999999999999986
No 99
>KOG0122|consensus
Probab=99.11 E-value=1.8e-10 Score=84.51 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.+||.+||.|.+|.+.+ .++|||||.|.+.++|.+||+.|||.-+..--|+|+|++++
T Consensus 206 L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 206 LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 568999999999999887 26899999999999999999999999999999999999853
No 100
>KOG0114|consensus
Probab=99.09 E-value=2.7e-10 Score=73.05 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=52.4
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
+|+||.+||.|..|++-. ..+|.|||.|++..+|.+|++.|+|..+.++-|.|-|..
T Consensus 35 mydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 35 MYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred HHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 379999999999999755 468999999999999999999999999999999998865
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=3.7e-10 Score=68.16 Aligned_cols=54 Identities=17% Similarity=0.347 Sum_probs=48.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVM 54 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 54 (184)
|.++|++||.|..+.+... .+|+|||+|.+.++|..|++.|++..+.|++|.|+
T Consensus 13 l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 13 LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4678999999999998873 26899999999999999999999999999998873
No 102
>KOG0121|consensus
Probab=99.08 E-value=1.6e-10 Score=76.89 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=50.7
Q ss_pred ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
||+||+++|+|.+|. |. ..-|+|||+|.+.++|..|++.++|+.+..++|++.|..
T Consensus 53 iyELFs~cG~irrii-MGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 53 IYELFSKCGDIRRII-MGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HHHHHHhccchheeE-eccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 589999999999995 44 357999999999999999999999999999999999864
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=4.4e-10 Score=68.07 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=48.0
Q ss_pred ChhhhccCCCeeEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274 1 MFSLTGVYGDVLRVKILYNK---KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 53 (184)
|.++|++||.|..+.+.... +|+|||+|.+.++|+.|++.++|..+.|++|.|
T Consensus 16 l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 16 LKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 46789999999999987643 699999999999999999999999999999887
No 104
>KOG0120|consensus
Probab=99.08 E-value=6.2e-10 Score=90.56 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=109.1
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCC
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGS 90 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
+..+.+- ..+++||++|.+.++|..|+ .+++..+.|+++.+.-....... | ......... ..+. +..
T Consensus 214 ~~s~~~n-~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~-p-~~~~~~~~~--------~~~~-~~~ 280 (500)
T KOG0120|consen 214 FVSVQLN-LEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKIRRPHDYQPV-P-GITLSPSQL--------GKVG-LLP 280 (500)
T ss_pred eeeeeec-ccccceeEEecCCCchhhhh-cccchhhCCCCceecccccccCC-c-cchhhhccc--------cccC-Ccc
Confidence 5555543 36799999999999999999 88999999999888643322111 0 000000000 0000 000
Q ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 91 KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 91 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.. ....-....++|++||..+++..++++...|| .+....++. .++++||.+|-++.-...|+..|||.++++
T Consensus 281 ~~-t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg-~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd 358 (500)
T KOG0120|consen 281 AS-TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG-PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD 358 (500)
T ss_pred cc-cCcccccchhhhccCcCccCHHHHHHHHHhcc-cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC
Confidence 00 00111234599999999999999999999999 776666654 358999999999999999999999999999
Q ss_pred CCeEEEEecCccccccc
Q psy17274 166 QSHLRVSFSKSNIQDIR 182 (184)
Q Consensus 166 ~~~l~v~~~~~~~~~~~ 182 (184)
++|.|..+-......+
T Consensus 359 -~~lvvq~A~~g~~~~~ 374 (500)
T KOG0120|consen 359 -KKLVVQRAIVGASNAN 374 (500)
T ss_pred -ceeEeehhhccchhcc
Confidence 8999998876654443
No 105
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=6.4e-10 Score=89.15 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=53.5
Q ss_pred ChhhhccCCCeeEEEEee-CCCCeEEEEeCCH--HHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAES--HQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~--~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.||.|.+|.|++ ..+|||||+|.+. .++.+||..|||..+.|+.|+|..++..
T Consensus 27 LravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 27 LLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 567999999999999998 4689999999988 7899999999999999999999987643
No 106
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=80.62 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|+.||+|.+|++.+ ..+++|||+|.++++|+.|+ .|+|..+.+++|.|....
T Consensus 22 LrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 22 VYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 578999999999999987 35689999999999999999 899999999999998654
No 107
>KOG1457|consensus
Probab=98.97 E-value=4e-09 Score=76.68 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE--EEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCC--CeEEE
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGF--KFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQ--SHLRV 171 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v--~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~--~~l~v 171 (184)
-+||||.+||.++..-+|..+|..|- .-+.. +...+. +..||+.|.+.++|..|+..|||..++-. ..|+|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~-GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFH-GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCC-CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 58999999999999999999999986 33333 333222 36899999999999999999999999743 48999
Q ss_pred EecCccccc
Q psy17274 172 SFSKSNIQD 180 (184)
Q Consensus 172 ~~~~~~~~~ 180 (184)
.++|+.+..
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999987543
No 108
>KOG0126|consensus
Probab=98.97 E-value=1.5e-10 Score=81.44 Aligned_cols=55 Identities=16% Similarity=0.440 Sum_probs=51.2
Q ss_pred hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
..+||+||+|.+|.+++ .++||||..|++..+...|++.|||..+.||.|+|.-.
T Consensus 53 l~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 53 LCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45899999999999998 48999999999999999999999999999999999853
No 109
>KOG0151|consensus
Probab=98.94 E-value=4.7e-09 Score=87.28 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
.|.++.|||+||++.++++.|...|..|| +|..++|+= ..+.+|||-|.+..||..|++.|+|..+.+ +.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfg-PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~-~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFG-PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME-YE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccC-cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-ee
Confidence 45678899999999999999999999999 898998862 236899999999999999999999999999 89
Q ss_pred EEEEecCc
Q psy17274 169 LRVSFSKS 176 (184)
Q Consensus 169 l~v~~~~~ 176 (184)
+++.|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999964
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=4.5e-09 Score=63.86 Aligned_cols=55 Identities=24% Similarity=0.394 Sum_probs=49.5
Q ss_pred ChhhhccCCCeeEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274 1 MFSLTGVYGDVLRVKILYNK----KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 55 (184)
|.++|+.||+|.++.+.... .|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 16 i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 16 LRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 45789999999999988743 79999999999999999999999999999998864
No 111
>KOG0533|consensus
Probab=98.92 E-value=7.8e-09 Score=77.30 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
...|.|.|||+.++++||+++|..|| .+..+-+..+ +.|.|-|.|...+||..|++.+||..++| +.|++....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG-~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFG-ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG-RPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhc-cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC-ceeeeEEec
Confidence 46799999999999999999999999 8888877653 35899999999999999999999999999 899998776
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
++
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 65
No 112
>KOG4660|consensus
Probab=98.91 E-value=7.5e-10 Score=89.67 Aligned_cols=158 Identities=14% Similarity=0.213 Sum_probs=105.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|..+|+.||+|..|+....+.|.+||+|-|..+|++|++.|++.++.|+.|.+..+..... +.. .+...+.+
T Consensus 92 L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~-~~~---~~~~~~~~---- 163 (549)
T KOG4660|consen 92 LLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAM-GLQ---SGTSFLNH---- 163 (549)
T ss_pred HHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccc-hhc---ccchhhhh----
Confidence 5689999999999987778899999999999999999999999999999888221110000 000 00001111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
+..|...+...-.+.. .++.- |++..+..-++.+++.+| .+.. +..+.-+..-+++|.+..++..+...+ |
T Consensus 164 ----~~~p~a~s~pgg~~~~-~~~g~-l~P~~s~~~~~~~~~~~~-~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G 234 (549)
T KOG4660|consen 164 ----FGSPLANSPPGGWPRG-QLFGM-LSPTRSSILLEHISSVDG-SSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-G 234 (549)
T ss_pred ----ccchhhcCCCCCCcCC-cceee-eccchhhhhhhcchhccC-cccc-ccccchhhhhhhhhccccchhhcccCC-c
Confidence 1111111111111112 23332 999999888888999999 6655 555433457789999999998887755 8
Q ss_pred eecCCCCeEEEEecCc
Q psy17274 161 HQLSEQSHLRVSFSKS 176 (184)
Q Consensus 161 ~~i~g~~~l~v~~~~~ 176 (184)
..+.+ ....++|+.+
T Consensus 235 ~~~s~-~~~v~t~S~~ 249 (549)
T KOG4660|consen 235 FLISN-SSGVITFSGP 249 (549)
T ss_pred eecCC-CCceEEecCC
Confidence 88888 5777777765
No 113
>KOG4208|consensus
Probab=98.90 E-value=2.9e-09 Score=76.44 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=50.1
Q ss_pred hhhhccC-CCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 2 FSLTGVY-GDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 2 ~~lF~~y-G~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
...|.++ |.|+++++-+ +++|||||+|++++.|..|-++||+.-|+|+.|.|.+-...
T Consensus 67 ~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 67 LNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 4567777 7777877656 58999999999999999999999999999999999986544
No 114
>KOG0113|consensus
Probab=98.89 E-value=4.9e-09 Score=79.12 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=55.8
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ 62 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~ 62 (184)
|...|+.||+|++|.+++ .++|||||+|.++.+...|.+..+|..+.|+.|.|.+-...++.
T Consensus 118 LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 118 LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccc
Confidence 346799999999999887 47999999999999999999999999999999999987766553
No 115
>KOG0146|consensus
Probab=98.84 E-value=1.2e-08 Score=76.04 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeec-CCC-CeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQL-SEQ-SHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i-~g~-~~l~v~ 172 (184)
..+.|||+-|...-+|+|++.+|.+|| .|+++.+.+ .+||+|||.|.+..||..||..|||..- .|. -.|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG-~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFG-NIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccC-CcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 356799999999999999999999999 999999986 3589999999999999999999999854 442 478888
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|+...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 87643
No 116
>KOG0112|consensus
Probab=98.80 E-value=4.1e-09 Score=89.56 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=111.9
Q ss_pred hhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 2 FSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
-..|..+|.|.+|.+-. ....||||.|.+...+-+|...+.+..+..-.+++.+...
T Consensus 390 R~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~------------------- 450 (975)
T KOG0112|consen 390 RPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP------------------- 450 (975)
T ss_pred hhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-------------------
Confidence 35789999999998644 2357899999999999999988888776544444433321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ 157 (184)
...+++.+++++|++-+.-..|...|..|| .|..|.+- ....||+|+|+++..|+.|+..
T Consensus 451 ------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fG-pir~Idy~-hgq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 451 ------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFG-PIRIIDYR-HGQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ------------------ccccceeeccCCCCCCChHHHHHHHhhccC-cceeeecc-cCCcceeeecccCccchhhHHH
Confidence 001577899999999999999999999999 78777654 4678999999999999999999
Q ss_pred hcCeecCCC-CeEEEEecCcc
Q psy17274 158 MHNHQLSEQ-SHLRVSFSKSN 177 (184)
Q Consensus 158 lng~~i~g~-~~l~v~~~~~~ 177 (184)
|-|..++|+ +.|+|.|++..
T Consensus 511 ~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhcCcCCCCCcccccccccCC
Confidence 999999987 78999999876
No 117
>KOG0226|consensus
Probab=98.80 E-value=1.1e-08 Score=75.60 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=95.2
Q ss_pred hhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 2 FSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
+..|+.|-.....++++ .-.+.+|+.|.....-.++-..-++..+.-+++++ +..... .|
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gtsw-------------ed- 180 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGTSW-------------ED- 180 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccccc-------------CC-
Confidence 34555555555555444 24678888888777766666555554444443332 221111 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAI 152 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~ 152 (184)
|...++.. -.-.||++.|.-.++++.|...|.+|- .....++++ +++|++||.|.+++++.
T Consensus 181 ----------Psl~ew~~---~DfRIfcgdlgNevnd~vl~raf~Kfp-sf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 181 ----------PSLAEWDE---DDFRIFCGDLGNEVNDDVLARAFKKFP-SFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ----------cccccCcc---ccceeecccccccccHHHHHHHHHhcc-chhhccccccccccccccceeeeecCHHHHH
Confidence 10001100 234699999999999999999999998 777777775 34799999999999999
Q ss_pred HHHHHhcCeecCCCCeEEEEe
Q psy17274 153 TALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 153 ~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.|+..|||..++. ++|++.=
T Consensus 247 rAmrem~gkyVgs-rpiklRk 266 (290)
T KOG0226|consen 247 RAMREMNGKYVGS-RPIKLRK 266 (290)
T ss_pred HHHHhhccccccc-chhHhhh
Confidence 9999999999999 8887643
No 118
>KOG0108|consensus
Probab=98.75 E-value=1.4e-08 Score=82.09 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=55.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|+..|.|.++++.. +.+||||++|.+.++|.+|++.|||.++.|++|+|.|+.....
T Consensus 35 l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 35 LLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred HHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 568999999999999886 4789999999999999999999999999999999999865543
No 119
>KOG1365|consensus
Probab=98.67 E-value=1.8e-08 Score=78.57 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=94.8
Q ss_pred CeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccC--CCCCCCCCCcccccCCCCCC
Q psy17274 10 DVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQL--PKEGQPDAGLTKDYTASPLH 83 (184)
Q Consensus 10 ~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 83 (184)
....|-++. +..|-|||.|+.+++|+.|+.. +...+.-|=|.+..|....... .+...+ +..... .++.
T Consensus 191 g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~--pLi~~~-~sp~- 265 (508)
T KOG1365|consen 191 GTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE--PLIPGL-TSPL- 265 (508)
T ss_pred CccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc--cccCCC-CCCC-
Confidence 445565554 3568899999999999999953 3333333334444333222110 000000 000000 0000
Q ss_pred CCCCCCCCCCCCCCC---CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--EEEccCC----CceEEEEeCCHHHHHHH
Q psy17274 84 RFKKPGSKNFQNIYP---PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--FKFFPKD----RKMALLQLDSIEEAITA 154 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~---~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--v~v~~~~----~~~afV~f~~~~~A~~A 154 (184)
-|. ...+..+ +..+|-+.+||+..+.+++.+.|..|-..|.. |.+.-+. .|.|||+|.+.++|..|
T Consensus 266 ---~p~--~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aa 340 (508)
T KOG1365|consen 266 ---LPG--GPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAA 340 (508)
T ss_pred ---CCC--CccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHH
Confidence 000 0111111 35689999999999999999999998743433 5554432 58999999999999999
Q ss_pred HHHhcCeecCCCCeEEEEec
Q psy17274 155 LIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 155 i~~lng~~i~g~~~l~v~~~ 174 (184)
....+.+.+.+ |.|.|--+
T Consensus 341 aqk~hk~~mk~-RYiEvfp~ 359 (508)
T KOG1365|consen 341 AQKCHKKLMKS-RYIEVFPC 359 (508)
T ss_pred HHHHHHhhccc-ceEEEeec
Confidence 99999999999 88888543
No 120
>KOG0106|consensus
Probab=98.66 E-value=2.4e-08 Score=73.26 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.+||++||+.+.+.+|..+|..|| .+..+.+. .+++||+|++..+|..|+.-|||..+.| -.+.|.|++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg-~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~-e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYG-KIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCG-ERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcc-ccccceee---cccceeccCchhhhhcccchhcCceecc-eeeeeecccc
Confidence 589999999999999999999999 88887653 4889999999999999999999999999 4799999884
No 121
>KOG1548|consensus
Probab=98.63 E-value=1.5e-07 Score=72.56 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcee--------EEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVK--------GFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~--------~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
++.|||+|||.++|.+++.++|+.+| .|. .|++.... +|-|.|.|-..++-.-|+..|++..+.| +
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcG-iI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg-~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCG-IIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG-K 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcc-eEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-c
Confidence 45699999999999999999999999 542 35666532 6899999999999999999999999999 8
Q ss_pred eEEEEecCcc
Q psy17274 168 HLRVSFSKSN 177 (184)
Q Consensus 168 ~l~v~~~~~~ 177 (184)
.|+|+-++-+
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999977655
No 122
>KOG0149|consensus
Probab=98.63 E-value=3.2e-08 Score=72.52 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=48.8
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.+.|++||+|+...|+. +++||+||+|.|.++|.+|++.- +-.+.||+-.|.++..
T Consensus 29 l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 29 LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 567899999999988876 58999999999999999999764 3468999999987754
No 123
>KOG4210|consensus
Probab=98.62 E-value=5.8e-08 Score=74.96 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=106.3
Q ss_pred hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
+++..+|.+....... .++|++.+.|...+.+..|+...-.....++.+.....+......
T Consensus 107 ~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~-------------- 172 (285)
T KOG4210|consen 107 NFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRP-------------- 172 (285)
T ss_pred ccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccc--------------
Confidence 4566777665544333 368999999999999999996554456666665554443211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAI 152 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~ 152 (184)
.....+. ...++...+++.|++..+++++|+..|..+| .|..+++... .+++|+|.|.+..++.
T Consensus 173 -~n~~~~~---------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~-~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 173 -KNKLSRL---------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSG-EITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred -cchhccc---------ccCccccceeecccccccchHHHhhhccCcC-cceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 0000000 0111334455999999999999999999999 9999987652 2689999999999999
Q ss_pred HHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 153 TALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 153 ~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
.|+.. +...+.+ +++.+.+.+...
T Consensus 242 ~~~~~-~~~~~~~-~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 242 LALND-QTRSIGG-RPLRLEEDEPRP 265 (285)
T ss_pred HHhhc-ccCcccC-cccccccCCCCc
Confidence 99998 8999999 899999988763
No 124
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.59 E-value=2.2e-07 Score=61.23 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=41.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.+|++.+++..++.++|++.|++|| .|..|.+.+ +...|+|.|.+++.|..|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g-~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG-EVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--T-T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC-CcceEEecC-CCCEEEEEECCcchHHHHHHHHHhc
Confidence 4789999999999999999999999 999998874 7789999999999999999988765
No 125
>KOG2193|consensus
Probab=98.53 E-value=5e-09 Score=82.54 Aligned_cols=119 Identities=20% Similarity=0.307 Sum_probs=99.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCc-eecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q psy17274 20 KKDSALIQMAESHQAHLAMMHMDKL-RVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYP 98 (184)
Q Consensus 20 ~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (184)
+.|||||.+.+...|.+|++.++|. ++.|+++.++.+-.+..
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq------------------------------------- 78 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ------------------------------------- 78 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH-------------------------------------
Confidence 4699999999999999999999996 78899999987652221
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEE--EEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMAL--LQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~af--V~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.++.+-|.|+|+...|+.|..|..+|| .|+.+.........+. |+|.+.+.+..||..|||.++.. ..++++|-..
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg-~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en-~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYG-TVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN-QHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccC-CHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh-hhhhcccCch
Confidence 244588999999999999999999999 8988877644444443 68899999999999999999999 7999999654
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 157 e 157 (584)
T KOG2193|consen 157 E 157 (584)
T ss_pred h
Confidence 3
No 126
>KOG4209|consensus
Probab=98.51 E-value=1.8e-07 Score=70.06 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
..+.+||+|+...+|.+++..+|+.|| .|..+.+.. ..+++|||+|.+.+.+.+|+. |||..+.| +.+.|++
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg-~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~-~~i~vt~ 176 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCG-GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG-PAIEVTL 176 (231)
T ss_pred CCceEEEeccccccccchhhheeeccC-CccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc-ccceeee
Confidence 467899999999999999999999999 887777654 247899999999999999999 99999999 7999998
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
.+-.+
T Consensus 177 ~r~~~ 181 (231)
T KOG4209|consen 177 KRTNV 181 (231)
T ss_pred eeeec
Confidence 77653
No 127
>KOG4454|consensus
Probab=98.46 E-value=6.4e-08 Score=70.26 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
..++|+|.|+-..++|+-|.++|-+.| +|.+|.|-.. ...+|||.|.+...-.-|+..|||..+.+ +.|++.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaG-PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~-~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAG-PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE-DEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccC-ceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc-chhhccccc
Confidence 367899999999999999999999999 8888876431 13599999999999999999999999999 688888754
Q ss_pred c
Q psy17274 176 S 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 128
>KOG0116|consensus
Probab=98.43 E-value=5e-07 Score=72.83 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---C--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---D--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
..+|||.|||.++++.+|++.|.+|| .|+...|..+ . .++|||+|++.+++..|+.+= -..+++ ++|.|.-.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG-~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFG-PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-RKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcc-cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC-eeEEEEec
Confidence 34599999999999999999999999 8887776542 2 379999999999999999864 777888 89999866
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+..
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 553
No 129
>KOG4661|consensus
Probab=98.40 E-value=3.7e-07 Score=74.80 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=53.8
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.+||++||+|.-.+++.+ -+-|+||+|.+.++|.++|+.|+-+++.|+.|.|+-+++..
T Consensus 422 LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 5789999999999988873 35689999999999999999999999999999999887553
No 130
>KOG0153|consensus
Probab=98.40 E-value=5.1e-07 Score=69.69 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=48.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~ 58 (184)
|.+.|.+||+|.+|.++. .+++|||+|.+.++|+.|.+.+-+ ..+.|++|.|.|++.
T Consensus 245 IrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 245 IRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 457899999999999887 458999999999999998775544 466899999999986
No 131
>KOG4454|consensus
Probab=98.38 E-value=1.2e-07 Score=68.98 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=85.0
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|++||-+-|+|.+|.|.. .+..||||.|.+.-+..-|++.+||..++++.+.+.+-....-
T Consensus 26 L~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sh---------------- 89 (267)
T KOG4454|consen 26 LSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSH---------------- 89 (267)
T ss_pred HHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCCc----------------
Confidence 678999999999998876 2445999999999999999999999999999988854220000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--C--CCceEEEEeCCHHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--K--DRKMALLQLDSIEEAIT 153 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~--~~~~afV~f~~~~~A~~ 153 (184)
.-|...++++.+...|+.-| .+..+++-. + .+.++|+.+--....-.
T Consensus 90 ----------------------------apld~r~~~ei~~~v~s~a~-p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 90 ----------------------------APLDERVTEEILYEVFSQAG-PIEGVRIPTDNDGRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred ----------------------------chhhhhcchhhheeeecccC-CCCCccccccccCCccCccchhhhhhhcCcH
Confidence 00455666777777777777 666665543 1 35677777766666666
Q ss_pred HHHHhcCeecC
Q psy17274 154 ALIQMHNHQLS 164 (184)
Q Consensus 154 Ai~~lng~~i~ 164 (184)
|+....+....
T Consensus 141 ~~~~y~~l~~~ 151 (267)
T KOG4454|consen 141 ALDLYQGLELF 151 (267)
T ss_pred HhhhhcccCcC
Confidence 66666655443
No 132
>KOG0132|consensus
Probab=98.36 E-value=5.8e-07 Score=75.85 Aligned_cols=58 Identities=16% Similarity=0.360 Sum_probs=53.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.||+|.+|.++. .+|+|||.|....+|.+|++.|++..+.++.|+|.|+...
T Consensus 438 L~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 438 LANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 568999999999998765 7899999999999999999999999999999999998643
No 133
>KOG0128|consensus
Probab=98.34 E-value=1e-07 Score=80.94 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=97.9
Q ss_pred hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274 2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD 76 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~ 76 (184)
...|+.+|-+..+++.. .-+|+|+++|..+++|.+|+...++. ++|+
T Consensus 685 ~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~gK--------------------------- 736 (881)
T KOG0128|consen 685 SERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFGK--------------------------- 736 (881)
T ss_pred hhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhhh---------------------------
Confidence 45678888887776552 35899999999999999999665554 3331
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHH
Q psy17274 77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAI 152 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~ 152 (184)
..++|.|.|+..|.++|+.+|..+| .++..+++. +.+|.|+|.|.+..+|.
T Consensus 737 ------------------------~~v~i~g~pf~gt~e~~k~l~~~~g-n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 737 ------------------------ISVAISGPPFQGTKEELKSLASKTG-NVTSLRLVTVRAGKPKGKARVDYNTEADAS 791 (881)
T ss_pred ------------------------hhhheeCCCCCCchHHHHhhccccC-CccccchhhhhccccccceeccCCCcchhh
Confidence 1388999999999999999999999 888887653 23689999999999999
Q ss_pred HHHHHhcCeecCCCCeEEEEecCc
Q psy17274 153 TALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 153 ~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.+...+++..+.- +.+.|..+.+
T Consensus 792 ~~~~s~d~~~~rE-~~~~v~vsnp 814 (881)
T KOG0128|consen 792 RKVASVDVAGKRE-NNGEVQVSNP 814 (881)
T ss_pred hhcccchhhhhhh-cCccccccCC
Confidence 9999999999888 6777776544
No 134
>KOG0129|consensus
Probab=98.34 E-value=2e-05 Score=64.04 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred hhhhccCCCeeEEEEee-------CCCC---eEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc----ccC-CCC
Q psy17274 2 FSLTGVYGDVLRVKILY-------NKKD---SALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA----VQL-PKE 66 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~-------~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~----~~~-~~~ 66 (184)
.+-|..||.+.-=+-.+ -.+| |+|..|++..+++.-+.+. ...+..+.++.+.... +++ |..
T Consensus 277 ~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~yf~vss~~~k~k~VQIrPW~ 353 (520)
T KOG0129|consen 277 NASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNYYFKVSSPTIKDKEVQIRPWV 353 (520)
T ss_pred HhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccceEEEEecCcccccceeEEeeE
Confidence 45688888875433211 1356 9999999999988877654 3355666665553221 111 110
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCceeEEEEccC-----CCce
Q psy17274 67 GQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFT-EKGFTVKGFKFFPK-----DRKM 140 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~~v~~v~v~~~-----~~~~ 140 (184)
.. ..+|..+ .+....|.+||||++||--++.++|-.+|+ -|| .|..+-|--+ .+|.
T Consensus 354 la-----Ds~fv~d------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG-gV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 354 LA-----DSDFVLD------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG-GVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred ec-----cchhhhc------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcC-ceEEEEeccCcccCCCCCc
Confidence 00 0011111 112233789999999999999999999999 689 7877766432 3799
Q ss_pred EEEEeCCHHHHHHHHHH
Q psy17274 141 ALLQLDSIEEAITALIQ 157 (184)
Q Consensus 141 afV~f~~~~~A~~Ai~~ 157 (184)
|-|.|.+-..=.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999885
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=1.7e-05 Score=51.26 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=61.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCC---CeEEE
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQ---SHLRV 171 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G-~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~---~~l~v 171 (184)
+||-|.|+|..+|.++|.+++.... +..+-+-+.- -+.|+|||.|.+++.|.+-.+.++|+..... +...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 4799999999999999999987643 1333332211 1369999999999999999999999998632 67899
Q ss_pred EecCcccc
Q psy17274 172 SFSKSNIQ 179 (184)
Q Consensus 172 ~~~~~~~~ 179 (184)
+|++-+-.
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99987643
No 136
>KOG0415|consensus
Probab=98.24 E-value=1.4e-06 Score=67.68 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=52.2
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|--+||.||.|.++.+++ .+--||||+|.+.++++.|.-.|++..+..++|.|.||..
T Consensus 256 LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 256 LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 345899999999999998 2457999999999999999999999999999999999763
No 137
>KOG4211|consensus
Probab=98.24 E-value=4.2e-06 Score=67.47 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
...|.+.+||.++|++||.+.|+.++ |+++.+.+. ..|.|+|+|.+.+++.+|++ .|-..++. |-|.|-=+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~-RYIEVf~~ 83 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG--IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGH-RYIEVFTA 83 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc--eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCC-ceEEEEcc
Confidence 45688899999999999999999998 777766653 36899999999999999998 57777777 78888654
No 138
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.23 E-value=9.5e-06 Score=52.75 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEE------------EccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK------------FFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~------------v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
...|.|.+.|+.. ...+.+.|++|| .|.+.. -.+...+.-.|+|+++.+|.+||. -||..+.|.-
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G-~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFG-TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS--EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcc-eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4568999999985 567888999999 887764 223467899999999999999998 7999999943
Q ss_pred eEEEEecCcc
Q psy17274 168 HLRVSFSKSN 177 (184)
Q Consensus 168 ~l~v~~~~~~ 177 (184)
-+-|.|.++.
T Consensus 83 mvGV~~~~~~ 92 (100)
T PF05172_consen 83 MVGVKPCDPA 92 (100)
T ss_dssp EEEEEE-HHH
T ss_pred EEEEEEcHHh
Confidence 4457766544
No 139
>KOG3152|consensus
Probab=98.23 E-value=7.5e-07 Score=66.15 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----------C------ceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----------R------KMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----------~------~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.+-+||++|+|+.+...-|+++++.|| .|-+|.+.+.. . ..|-|+|.+...|..+...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yG-eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYG-EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcc-ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 356899999999999999999999999 99999887621 0 25789999999999999999999
Q ss_pred ecCC
Q psy17274 162 QLSE 165 (184)
Q Consensus 162 ~i~g 165 (184)
+|+|
T Consensus 152 ~Igg 155 (278)
T KOG3152|consen 152 PIGG 155 (278)
T ss_pred ccCC
Confidence 9999
No 140
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.20 E-value=5.8e-06 Score=63.88 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCCCCHHH----H--HHHHHhcCCceeEEEEccCC------Cc--eEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 100 SPTLHLSNIPASVTEDE----L--KEAFTEKGFTVKGFKFFPKD------RK--MALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~----l--~~~F~~~G~~v~~v~v~~~~------~~--~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.+-+||.+||+.+..++ | .+.|.+|| .|..|.|-++. .+ -.+|+|.+.+||.+||...+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG-kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG-KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcc-ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 34579999998887666 3 37899999 99999776521 12 23999999999999999999999999
Q ss_pred CCeEEEEecCcc
Q psy17274 166 QSHLRVSFSKSN 177 (184)
Q Consensus 166 ~~~l~v~~~~~~ 177 (184)
|.|+.+|+...
T Consensus 193 -r~lkatYGTTK 203 (480)
T COG5175 193 -RVLKATYGTTK 203 (480)
T ss_pred -ceEeeecCchH
Confidence 99999998653
No 141
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.16 E-value=9.6e-06 Score=46.56 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=43.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHH
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai 155 (184)
+.|-|.+.|+...+ .+...|..|| +|..+.+- ..+...+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fG-eI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFG-EIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcC-CEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 46889999988764 5556999999 99998875 46889999999999999985
No 142
>KOG4307|consensus
Probab=98.14 E-value=9.8e-06 Score=67.99 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=97.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCC-----CCCC-CCCCCC
Q psy17274 19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPL-----HRFK-KPGSKN 92 (184)
Q Consensus 19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~ 92 (184)
...|-++|+|....++++|++ -|...+-.|.+.+..........+.+-....+. .+...+.. .+.. .++..
T Consensus 350 ~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~-~~~~~~hg~p~~~pr~~~~~gq~- 426 (944)
T KOG4307|consen 350 PQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPP-PVIQNNHGRPIAPPRAMVRPGQN- 426 (944)
T ss_pred CcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCC-CcccccCCCCCCCcccccCCCCC-
Confidence 347999999999999999984 466667778888876554433322111100000 00000000 0000 01111
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEcc--CC--CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 93 FQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFP--KD--RKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 93 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~--~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
..-..+.+.+|||..||..+++.++.+.|...- .|+. |.+.+ ++ ++.|||.|..++++..|...-+.+.++. +
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~-~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~-r 504 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA-AVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH-R 504 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhh-hhhheeEeccCCcccccchhhheeccccccchhhhcccccccCc-e
Confidence 001112467899999999999999999999887 5655 65543 22 5899999999999999999888888888 8
Q ss_pred eEEEEec
Q psy17274 168 HLRVSFS 174 (184)
Q Consensus 168 ~l~v~~~ 174 (184)
.|+|.-.
T Consensus 505 ~irv~si 511 (944)
T KOG4307|consen 505 IIRVDSI 511 (944)
T ss_pred EEEeech
Confidence 9999743
No 143
>KOG0115|consensus
Probab=98.12 E-value=1e-05 Score=60.24 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC
Q psy17274 32 HQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS 111 (184)
Q Consensus 32 ~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 111 (184)
.-|..|...|++....|+.|+|.|+.+ ..|+|.||+..
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~ 42 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQG 42 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchh
Confidence 347788889999999999999998862 35999999999
Q ss_pred CCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 112 VTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 112 ~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
++.+.|.+-|+.|| .|++..+..+ ..+.++|+|...-.|.+|+..++..-+.+
T Consensus 43 ~sndll~~~f~~fg-~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 43 ASNDLLEQAFRRFG-PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred hhhHHHHHhhhhcC-ccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 99999999999999 7766544432 24788999999999999999997665555
No 144
>KOG4205|consensus
Probab=98.11 E-value=2.8e-06 Score=66.09 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=58.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
...|+|++|+..++++.|++.|++|| +|..+.++. ++++++||+|++++.-..++. ..-+.|.| +.|.+.=+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~G-ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg-r~ve~k~a 82 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFG-EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG-RSVEPKRA 82 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccC-ceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCC-ccccceec
Confidence 55799999999999999999999999 999998886 347999999999888877766 44556677 66655433
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.05 E-value=1.1e-05 Score=50.08 Aligned_cols=51 Identities=27% Similarity=0.385 Sum_probs=36.6
Q ss_pred hhhhccCC-CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 2 FSLTGVYG-DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 2 ~~lF~~yG-~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
.+|+..|| +|.+| ..+.|.|.|.+++.|.+|...|+|..++|++|.|.|+.
T Consensus 24 ~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 24 RQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 45666665 56554 46999999999999999999999999999999999875
No 146
>KOG1365|consensus
Probab=98.00 E-value=0.00012 Score=57.69 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q psy17274 19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYP 98 (184)
Q Consensus 19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (184)
...|.|.|.|.++|.-+-|++. +...+.++.|.|.-+....--. ....+......|.+ +.
T Consensus 100 rRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f~~----------iagg~s~e~~~fls---k~------ 159 (508)
T KOG1365|consen 100 RRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEFLK----------IAGGTSNEAAPFLS---KE------ 159 (508)
T ss_pred ccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhheE----------ecCCccccCCCCCC---cc------
Confidence 4569999999999999999954 5666778888886443211100 00000000011111 00
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC---CceeEEEEcc--CC--CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKG---FTVKGFKFFP--KD--RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G---~~v~~v~v~~--~~--~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
....|-..+||+++++.++.+.|.+-- ...+.|-++. ++ .|.|||.|..+++|..|+.+ |...|+- |-|.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGq-RYIE 236 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQ-RYIE 236 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhH-HHHH
Confidence 123566789999999999999996422 1223332322 23 58999999999999999874 3333333 4443
No 147
>KOG4307|consensus
Probab=97.96 E-value=3.2e-05 Score=65.01 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=62.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++|-+.|+|.+++-+|+.++|..|-+...+|++-.++ .|.+.|-|++.++|..|...|+++.|.+ +.+++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n-r~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN-RVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc-eeEEEEe
Confidence 4889999999999999999999998555667665433 5789999999999999999999999999 8888754
No 148
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.87 E-value=0.00012 Score=50.51 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCCEEEEeCCC-----CCCCHH----HHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 98 PPSPTLHLSNIP-----ASVTED----ELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 98 ~~~~~l~v~nlp-----~~~t~~----~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
||..|+.|+=+. ...-++ +|.+.|..|| .|.-|++.. +.-.|+|.+-+.|.+|+. |+|.+++| +.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~G-evvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g-~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYG-EVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNG-RT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS--ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETT-EE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCC-ceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECC-EE
Confidence 367777776444 122233 6778899999 888887764 578999999999999988 99999999 89
Q ss_pred EEEEecCcc
Q psy17274 169 LRVSFSKSN 177 (184)
Q Consensus 169 l~v~~~~~~ 177 (184)
|+|....+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999987654
No 149
>KOG2202|consensus
Probab=97.85 E-value=4.2e-06 Score=62.33 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=49.1
Q ss_pred hhhhc-cCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 2 FSLTG-VYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 2 ~~lF~-~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.-|+ +||+|+++++..+ -.|-++|.|...++|++|++.|||..+.|++|.++++.
T Consensus 86 f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 86 FTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555 8999999977664 46889999999999999999999999999999999875
No 150
>KOG1995|consensus
Probab=97.84 E-value=2e-05 Score=61.32 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
-..++||.+||..+++.++.+.|.++| .|.. |.+.. ..|+.|.|.|++...|+.|+..+++..+.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg-~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCG-VIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcc-eeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 356799999999999999999999999 5532 22222 247899999999999999999999999999
Q ss_pred CCeEEEEecCccc
Q psy17274 166 QSHLRVSFSKSNI 178 (184)
Q Consensus 166 ~~~l~v~~~~~~~ 178 (184)
.+|+|+++...+
T Consensus 144 -n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 -NTIKVSLAERRT 155 (351)
T ss_pred -CCchhhhhhhcc
Confidence 699999988765
No 151
>KOG1996|consensus
Probab=97.79 E-value=7.1e-05 Score=56.95 Aligned_cols=74 Identities=24% Similarity=0.409 Sum_probs=58.2
Q ss_pred CCCEEEEeCCC--CCCC---HHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 99 PSPTLHLSNIP--ASVT---EDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp--~~~t---~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
|+++|.+.|+= ..++ +++++..|++|| .|.+|-|+.- ..-.-||+|+..++|.+|+-.|||+.++| |
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg-~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG-r 357 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYG-KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG-R 357 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhc-ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc-e
Confidence 56667777653 3343 567788999999 9988877641 12457999999999999999999999999 8
Q ss_pred eEEEEec
Q psy17274 168 HLRVSFS 174 (184)
Q Consensus 168 ~l~v~~~ 174 (184)
.++..|-
T Consensus 358 ~v~A~Fy 364 (378)
T KOG1996|consen 358 VVSACFY 364 (378)
T ss_pred eeeheec
Confidence 9888774
No 152
>KOG1855|consensus
Probab=97.73 E-value=3.5e-05 Score=61.34 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=55.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------------------CCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------------------DRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------------------~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
++++|.+.|||.+-.-+.|.+||+.+| .|..|+|... .+-.|+|+|+..+.|.+|.+.||.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G-~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVG-SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccc-ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 789999999999888899999999999 9999998642 134799999999999999998866
Q ss_pred eec
Q psy17274 161 HQL 163 (184)
Q Consensus 161 ~~i 163 (184)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 544
No 153
>KOG0151|consensus
Probab=97.68 E-value=4.4e-05 Score=64.32 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=53.0
Q ss_pred hhhhccCCCeeEEEEee--------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 2 FSLTGVYGDVLRVKILY--------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
...|..||+|.+|++|+ ....++||.|-+..+|++|+..|+|..+.+..+++.|++.-.
T Consensus 192 l~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 192 LRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred HHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 45689999999999998 357899999999999999999999999999999999997443
No 154
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.67 E-value=0.00015 Score=47.21 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred hhhhccCCCeeEEE------------EeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEcc
Q psy17274 2 FSLTGVYGDVLRVK------------ILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMISK 57 (184)
Q Consensus 2 ~~lF~~yG~V~~v~------------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s~ 57 (184)
.+.|++||+|.+.. -.....++-.|+|.++.+|.+|+ ..||..+.|.- +-|.+.+
T Consensus 23 l~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 23 LRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEEEEEE-H
T ss_pred HHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEEEEEEcH
Confidence 46899999998875 22246789999999999999999 67999998864 4466664
No 155
>KOG0533|consensus
Probab=97.62 E-value=0.00013 Score=54.92 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=51.6
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.+||..||++..+-+-. .+.|+|-|.|...++|..|++.++|..+.|++|.+......
T Consensus 100 l~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 100 LKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred HHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 468999999999987665 36799999999999999999999999999999999875544
No 156
>KOG4209|consensus
Probab=97.61 E-value=9.5e-05 Score=55.52 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=49.2
Q ss_pred hhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 3 SLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
..|+.||.|..|.+.. ..+|+|||+|.+.+.++.|++ |||..+.|+.+.+.+-+-.
T Consensus 120 ~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 120 LHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred heeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 5689999999887776 368999999999999999997 9999999999999876643
No 157
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.60 E-value=0.0002 Score=49.41 Aligned_cols=53 Identities=19% Similarity=0.476 Sum_probs=44.5
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.+.|..||+|.=|++. .+.-+|+|.+.++|-+|+ .++|..+.|+.|.|..-.
T Consensus 53 ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 53 LLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--
T ss_pred HHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC
Confidence 35789999999888875 378999999999999999 789999999999998654
No 158
>KOG2202|consensus
Probab=97.59 E-value=5e-05 Score=56.71 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHH-hcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 115 DELKEAFT-EKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 115 ~~l~~~F~-~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+++...++ +|| +|+.+.|-.+. .|-++|+|...++|..|+..|||.++.| ++|...++.-+
T Consensus 83 Ed~f~E~~~kyg-Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G-~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYG-EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG-RPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhh-hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC-CcceeeecCcC
Confidence 55666666 899 99888665422 5889999999999999999999999999 79999987643
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00016 Score=56.08 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=46.4
Q ss_pred hhhccCCCeeEEEEeeC-----C-CC-e-EEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 3 SLTGVYGDVLRVKILYN-----K-KD-S-ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~-----~-~g-~-afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
+.|.+||.|.+|-+-++ + .+ + .+|.|.+.|+|.+||...+|..+.||-|+..|..
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 57999999999987652 1 12 2 3999999999999999999999999999998854
No 160
>KOG4676|consensus
Probab=97.56 E-value=4.5e-05 Score=60.12 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=102.4
Q ss_pred ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcccc----------
Q psy17274 1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ---------- 62 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~---------- 62 (184)
+++||...|+|..+.++.+ ....|||.|.+...+.-|- .|.++.|-++.|.|-..-...+.
T Consensus 24 m~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~ 102 (479)
T KOG4676|consen 24 MQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELAD 102 (479)
T ss_pred HHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCc
Confidence 4689999999999998872 3578999999999999886 78888888998888654322211
Q ss_pred ---CCCCCCCCCCcccc-----cCCCCCCCCCCCCCC---CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE
Q psy17274 63 ---LPKEGQPDAGLTKD-----YTASPLHRFKKPGSK---NFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF 131 (184)
Q Consensus 63 ---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v 131 (184)
+|.....++-...+ .+..++.-...|... ....+..-.++++|.+|+..+...++.+.|..+| .|...
T Consensus 103 ~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~G-ev~ya 181 (479)
T KOG4676|consen 103 QNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKG-EVSYA 181 (479)
T ss_pred ccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcc-hhhhh
Confidence 01100011000000 000011111111110 0011111236799999999999999999999999 88766
Q ss_pred EEccC-CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 132 KFFPK-DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 132 ~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.+-.. ...++-++|..-.....|+. ++|....-
T Consensus 182 ~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 182 HTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 55432 24567799988888888877 67766654
No 161
>KOG2416|consensus
Probab=97.44 E-value=0.00024 Score=58.94 Aligned_cols=79 Identities=29% Similarity=0.441 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC--CCCeEEEEecC
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS--EQSHLRVSFSK 175 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~--g~~~l~v~~~~ 175 (184)
+++++|||.||--..|.-.|+.+..+-|+.|+.. .+.+-+..|||.|.+.++|.....+|||...- +++.|-+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 3689999999999999999999999776477766 44456889999999999999999999999773 22889999987
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
..
T Consensus 521 ~d 522 (718)
T KOG2416|consen 521 AD 522 (718)
T ss_pred hh
Confidence 54
No 162
>KOG2314|consensus
Probab=97.42 E-value=0.00078 Score=55.69 Aligned_cols=72 Identities=13% Similarity=0.291 Sum_probs=56.3
Q ss_pred CCEEEEeCCCC--CCC----HHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274 100 SPTLHLSNIPA--SVT----EDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHL 169 (184)
Q Consensus 100 ~~~l~v~nlp~--~~t----~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l 169 (184)
..+++|.|+|- ... ..-|..+|+++| ++....+... .+|+.|++|++..+|..|++.|||+.+.-.|++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g-k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG-KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhc-cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 46789999983 222 233567899999 8888765432 368999999999999999999999999765777
Q ss_pred EEE
Q psy17274 170 RVS 172 (184)
Q Consensus 170 ~v~ 172 (184)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 163
>KOG4676|consensus
Probab=97.38 E-value=0.00022 Score=56.39 Aligned_cols=73 Identities=14% Similarity=0.349 Sum_probs=58.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC--------CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--------RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~--------~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
.+|.|.||.++.|.+.++.||.-.| +|..++++|+. ...|||.|.+...+..|-. |.++.+-+.-.|-+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lG-kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLG-KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcc-ccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3799999999999999999999999 99999999832 3689999999998888855 666666551244444
Q ss_pred ecC
Q psy17274 173 FSK 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 443
No 164
>KOG0116|consensus
Probab=97.31 E-value=0.00023 Score=57.70 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=46.9
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.+.|..||+|+...|... ...||||+|.+.++++.|+++ +-..+.|++|.|+--+
T Consensus 305 l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 305 LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 5689999999999887762 238999999999999999976 4667789999998644
No 165
>KOG0128|consensus
Probab=97.25 E-value=6.6e-06 Score=70.29 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=92.3
Q ss_pred hhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 3 SLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
.-|..+|.|++|++..+ ...++++.+....+++.|. ...|..+.++...+..+....-. ..
T Consensus 591 ~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~------------~~- 656 (881)
T KOG0128|consen 591 RQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKE------------EN- 656 (881)
T ss_pred HHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCCchhhh------------hc-
Confidence 35778999999987651 2347889999999998888 45666676666666544311100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc--c---CCCceEEEEeCCHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF--P---KDRKMALLQLDSIEEAI 152 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~--~---~~~~~afV~f~~~~~A~ 152 (184)
.+. .|. ......++|++||++.+.+++|...|..+| .+..+.+. . +-+|.|+++|..+++|.
T Consensus 657 -----~kv-s~n------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~-~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 657 -----FKV-SPN------EIRDLIKIFVSNLSPKMSEEDLSERFSPSG-TIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred -----cCc-Cch------HHHHHHHHHHhhcchhhcCchhhhhcCccc-hhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 000 000 000234689999999999999999999999 55444433 2 22799999999999999
Q ss_pred HHHHHhcCeecCC
Q psy17274 153 TALIQMHNHQLSE 165 (184)
Q Consensus 153 ~Ai~~lng~~i~g 165 (184)
+|+...++..++-
T Consensus 724 aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 724 AAVAFRDSCFFGK 736 (881)
T ss_pred hhhhhhhhhhhhh
Confidence 9999766665544
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.20 E-value=0.0024 Score=39.75 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
...+.+|+ .|...-..||.++|++|| .| .|..+ +-..|||.....+.|..|+..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG-~I-~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFG-QI-YVSWI--NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCC-CE-EEEEE--CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCC-cE-EEEEE--cCCcEEEEeecHHHHHHHHHHhcc
Confidence 35677888 999999999999999999 66 46666 457899999999999999998864
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.19 E-value=0.00052 Score=39.31 Aligned_cols=36 Identities=8% Similarity=0.268 Sum_probs=31.0
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHH
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAM 38 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai 38 (184)
...|..||+|.++.+- ....+.+|.|.+..+|++|+
T Consensus 18 l~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 18 LEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 4579999999998864 35799999999999999985
No 168
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.16 E-value=0.0041 Score=36.65 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=43.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l 158 (184)
.|+|.++ .+++.++++..|..| +..+.+|..+. -..+=|.|.+.+.|.+|+.+|
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 5999998 568889999999999 11255787773 346889999999999999865
No 169
>KOG2314|consensus
Probab=97.15 E-value=0.00041 Score=57.27 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=45.5
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec-CcEEEEEE
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF-GKQMRVMI 55 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~ 55 (184)
|..+|+++|+|...-+.. ..+|+.|++|++..+|+.|++.|||..+. ..++.|..
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 356899999998887653 46899999999999999999999999885 45566653
No 170
>KOG1996|consensus
Probab=97.14 E-value=0.00096 Score=50.96 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=45.4
Q ss_pred hhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 4 LTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 4 lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
-.++||.|.+|.|..- ..---||+|...++|.+|+-.|||.-|.||.++.+|-.
T Consensus 306 EceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 306 ECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4679999999987762 23447999999999999999999999999998887643
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.00 E-value=0.0059 Score=41.94 Aligned_cols=75 Identities=16% Similarity=0.343 Sum_probs=55.8
Q ss_pred CCCCCEEEEeCCCCCCC-HHHHH---HHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 97 YPPSPTLHLSNIPASVT-EDELK---EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t-~~~l~---~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
.||-.+|.|.=|..++. .+||+ .-.+.|| +|.+|... ++..|.|.|.+..+|=+|+.+++. ...| .-++++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG-pI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pg-tm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG-PIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPG-TMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC-Ccceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCC-ceEEee
Confidence 44667787765554442 34444 4567799 89988765 788999999999999999999988 4556 489998
Q ss_pred ecCc
Q psy17274 173 FSKS 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8643
No 172
>KOG2193|consensus
Probab=96.95 E-value=0.00081 Score=53.82 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe-ecCCCCeEEEEecCccccc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH-QLSEQSHLRVSFSKSNIQD 180 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~-~i~g~~~l~v~~~~~~~~~ 180 (184)
.||++||.+.++..||..+|.... ...+=.++ -..++|||.+.+..-|.+|++.++|. ++.| +++.+.++-++-+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak-~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqG-kr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK-IPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQG-KRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc-CCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcC-ceeeccchhhHHHH
Confidence 489999999999999999998764 21122222 25799999999999999999999998 5678 89999988765433
No 173
>KOG0226|consensus
Probab=96.91 E-value=0.00052 Score=51.36 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=40.2
Q ss_pred hccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 5 TGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 5 F~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.+|-.-..-++++ +++||+||.|.+++++.+|+..|||.-+..++|.+.-+
T Consensus 211 f~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 211 FKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44443333344444 47899999999999999999999999998888887543
No 174
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.85 E-value=0.0031 Score=45.70 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeEEEEecCccc
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l~v~~~~~~~ 178 (184)
.+.|+++|..++ .+.....++ +=+...|.|.+.++|..|...|+ +..+.| ..+++.|+....
T Consensus 9 ~~~l~~l~~~~~-~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g-~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYD-PPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNG-KRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT--SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETT-EE-EEE----SS
T ss_pred HHHHHHHHHhcC-CceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCC-CceEEEEccccc
Confidence 478999999999 777776664 66779999999999999999999 999999 799999996543
No 175
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.84 E-value=0.0018 Score=42.68 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=28.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
|.++|+.||.|.-|.+.+ ....|+|.|.++++|+.|++.+.-.
T Consensus 18 iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 18 IKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp HHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHT
T ss_pred HHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhc
Confidence 467899999999998765 4478999999999999999877544
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.003 Score=43.36 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=43.6
Q ss_pred hhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 3 SLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
.-.+.||+|.+|... .+-.|.|.|.|..+|.+|+.++.. ...|..+.|.|-.
T Consensus 109 ~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 109 QRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 345789999999876 467899999999999999999877 5678888888754
No 177
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.70 E-value=0.0042 Score=45.05 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=44.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC--CceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~s~~~ 59 (184)
|.++|..|+++.....++ +=+-..|.|.+.++|..|...|+ +..+.|..++|.|+...
T Consensus 12 l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 12 LEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 357899999999988776 44779999999999999999999 99999999999998533
No 178
>KOG4574|consensus
Probab=96.59 E-value=0.0019 Score=55.79 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=64.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec--CCCCeEEEEecC
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL--SEQSHLRVSFSK 175 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i--~g~~~l~v~~~~ 175 (184)
|-.+...+.|.+-+.+..-|..+|+.|| .|.+++.++ +-..|.|+|.+.+.|..|+++|+|.++ -| -+-+|+|++
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg-~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g-~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYG-SVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTG-APSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhc-chhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccC-CceeEEecc
Confidence 3345566777777888999999999999 999987763 678999999999999999999999977 36 389999998
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 54
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.58 E-value=0.0062 Score=37.95 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=33.7
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK 43 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 43 (184)
|++||++||.|.=-.| ....|||...+.+.|..|+..++-
T Consensus 25 I~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 25 IYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred HHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 5789999999864444 568899999999999999988864
No 180
>KOG4285|consensus
Probab=96.51 E-value=0.0038 Score=47.92 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s~ 57 (184)
+.++|++||+|.++.. .++..+-.|.|.+..+|++|| ..||+.+.|.. |=|..+.
T Consensus 213 vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred HHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 3579999999998864 367899999999999999999 67999888755 3455433
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.46 E-value=0.041 Score=36.49 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=50.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQ 166 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~ 166 (184)
+..+.+...|..++.++|..+.+.+-..|..++|++++ +-.+.++|.+.++|.+=...+||+.+..-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 33445555556666677777767665458888888754 45889999999999999999999998753
No 182
>KOG0112|consensus
Probab=96.25 E-value=0.00089 Score=58.08 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
.+.+|+++||+..+++.+++..|..+| .|..|.|-.. ...+|||.|.+...|..|...+.+..|.. ..+++.|+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~g-kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~-g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESG-KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN-GTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhc-cccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc-Cccccccc
Confidence 478899999999999999999999999 9999987542 24689999999999999999999999987 47777776
No 183
>KOG4574|consensus
Probab=96.22 E-value=0.0029 Score=54.73 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=51.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec--CcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~~~~ 61 (184)
|..||+.||.|.+++.++ .-..|.|+|.+.+.|..|.++|+|.++. |-+.+|.+++....
T Consensus 315 L~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 315 LATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred HHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 457999999999999876 4478999999999999999999999875 88889998875543
No 184
>KOG4285|consensus
Probab=96.10 E-value=0.031 Score=43.09 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=49.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQ 166 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~ 166 (184)
.=+.|.+.|+.-. .-|..+|++|| .|.+. +.+..-++-.|.|.+..+|.+||. -||+.|+|.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG-~Vvkh-v~~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCG-EVVKH-VTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhC-eeeee-ecCCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 3477888887664 45778999999 88766 344556789999999999999998 699999994
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.01 E-value=0.016 Score=41.79 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCce--eEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecCCC---
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTE-KGFTV--KGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLSEQ--- 166 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~-~G~~v--~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~--- 166 (184)
...|.|++||+++|++++.+.+++ ++..+ ..+.-... ....|+|.|.+.++...=...++|+.+-++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 447999999999999999998887 55221 22221111 135799999999999999999999988654
Q ss_pred -CeEEEEecCcc
Q psy17274 167 -SHLRVSFSKSN 177 (184)
Q Consensus 167 -~~l~v~~~~~~ 177 (184)
.+-.|.|+..+
T Consensus 87 ~~~~~VE~Apyq 98 (176)
T PF03467_consen 87 EYPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEEE-SS-
T ss_pred CcceeEEEcchh
Confidence 25667776654
No 186
>KOG2068|consensus
Probab=96.01 E-value=0.0023 Score=49.78 Aligned_cols=74 Identities=11% Similarity=0.175 Sum_probs=58.8
Q ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCceeEEEEccCC--------CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 102 TLHLSNIPASVTEDELK---EAFTEKGFTVKGFKFFPKD--------RKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~---~~F~~~G~~v~~v~v~~~~--------~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
-+|+-+|+..+..+++. ..|.+|| .|..|.+.... ...++|+|+..++|..||...+|..+.| +.|+
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqyg-ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg-~~lk 156 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYG-KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG-RALK 156 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccc-cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh-hhhH
Confidence 46788888777655543 5688999 88888776421 2358999999999999999999999999 7999
Q ss_pred EEecCcc
Q psy17274 171 VSFSKSN 177 (184)
Q Consensus 171 v~~~~~~ 177 (184)
.+|+..+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 9887665
No 187
>KOG4849|consensus
Probab=95.94 E-value=0.0087 Score=46.97 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=64.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
++||+||-.-+|++||.+.....|. .+..++++.+ +||||+|...+.....+-++.|--+.|.|+.+..++|-|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK 161 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence 6899999999999999999888884 4666777652 489999999999999999999999999997677777766
Q ss_pred ccc
Q psy17274 176 SNI 178 (184)
Q Consensus 176 ~~~ 178 (184)
...
T Consensus 162 ~~~ 164 (498)
T KOG4849|consen 162 TNQ 164 (498)
T ss_pred hhH
Confidence 543
No 188
>KOG0129|consensus
Probab=95.93 E-value=0.042 Score=45.29 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCc---eEEEEeCCHHHHHHHHHHhcC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRK---MALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~---~afV~f~~~~~A~~Ai~~lng 160 (184)
++.+||++||.+++|+.|...|.+|| .+ .|..-. ..+| |+|+-|++...-..-+..+.-
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FG-s~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFG-SV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred ccceeecCCCccccHHHHHhhccccc-ce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 57799999999999999999999999 54 244331 1246 999999998877766665544
No 189
>KOG1995|consensus
Probab=95.84 E-value=0.0048 Score=48.42 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.4
Q ss_pred ChhhhccCCCeeE--------EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLR--------VKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~--------v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|++.|.++|.|.. |++.+ ..++-|.|.|.++..|+.|+..+++..|.|.+|+|.++...
T Consensus 83 ~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 83 NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 4567888888754 23322 36899999999999999999999999999999999876543
No 190
>KOG2135|consensus
Probab=95.83 E-value=0.0057 Score=49.70 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=59.3
Q ss_pred CEEEEeCCCCCC-CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 101 PTLHLSNIPASV-TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 101 ~~l~v~nlp~~~-t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
..|-+.-.|..+ +..+|..+|.+|| .|..|.+-. +...|.|+|.+..+|.+|-. .++..|++ +.|+|-|-...
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG-~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnn-r~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFG-EIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNN-RFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcC-ccccccccC-chhhheeeeeccccccchhc-cccceecC-ceeEEEEecCC
Confidence 345555555544 5789999999999 999998753 46789999999999988854 79999999 89999997763
No 191
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.80 E-value=0.018 Score=37.30 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceec----CcEEEEEEccCc
Q psy17274 20 KKDSALIQMAESHQAHLAMMHMDKLRVF----GKQMRVMISKHQ 59 (184)
Q Consensus 20 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v~~s~~~ 59 (184)
+.|||||-|.++++|.+-.+.++|..+. .+...|.||+-+
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 6899999999999999999999999885 355667777643
No 192
>KOG1855|consensus
Probab=95.42 E-value=0.0045 Score=49.69 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.2
Q ss_pred ChhhhccCCCeeEEEEeeC------------------CCCeEEEEeCCHHHHHHHHHHhCCcee
Q psy17274 1 MFSLTGVYGDVLRVKILYN------------------KKDSALIQMAESHQAHLAMMHMDKLRV 46 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 46 (184)
|-.||+.+|.|..|+|+.- .+-+|+|+|...+.|.+|.+.|+...-
T Consensus 248 l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 248 LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQN 311 (484)
T ss_pred HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhh
Confidence 4579999999999999861 156799999999999999988866543
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.13 E-value=0.14 Score=30.57 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 110 ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
..++-++++..+..|+ -.+|. .++.-=+|.|.+..+|.+|....||+.+.+ ..|..
T Consensus 10 ~~~~v~d~K~~Lr~y~--~~~I~---~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~-y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR--WDRIR---DDRTGFYIVFNDSKEAERCFRAEDGTLFFT-YRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC--cceEE---ecCCEEEEEECChHHHHHHHHhcCCCEEEE-EEEEe
Confidence 4667889999999998 33443 244446899999999999999999999988 56653
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.95 E-value=0.054 Score=34.33 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=44.8
Q ss_pred EEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCE
Q psy17274 24 ALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPT 102 (184)
Q Consensus 24 afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (184)
|+|+|.++.-|++-++.-.- ..+.++.+.|..+....... .++. -....+.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-------------------~k~q-------v~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-------------------QKFQ-------VFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-------------------eEEE-------EEEcccCCE
Confidence 78999999999998854222 13345666665443111100 0000 001115678
Q ss_pred EEEeCCCCCCCHHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAF 121 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F 121 (184)
|.|+|||..+++++|++..
T Consensus 55 Vlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EEEeCCCCCCChhhheeeE
Confidence 9999999999999999865
No 195
>KOG0804|consensus
Probab=94.07 E-value=0.22 Score=40.68 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC---CceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---RKMALLQLDSIEEAITALIQMHNHQLSEQ 166 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV~f~~~~~A~~Ai~~lng~~i~g~ 166 (184)
+++.|.|-.+|..+|.-||..++..+-..|..+++++++ +-..+|+|.+-++|..=-..+||..+..-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 478899999999999999999998876568999998743 45789999999999999999999998753
No 196
>KOG4210|consensus
Probab=94.06 E-value=0.021 Score=44.39 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=48.4
Q ss_pred hhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 2 FSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
+..|..+|.|..|++.. ..+|+|+|.|.+..++..|+.. +...++|+++.+++..
T Consensus 203 ~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 203 KEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred hhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 45789999999999776 3689999999999999999977 8889999999998776
No 197
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.89 E-value=0.2 Score=30.59 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=25.6
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|-+|.+ ...++||+-... .|..+++.|++..+.|+++.|+.+
T Consensus 33 IG~I~I---~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 33 IGRIDI---FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEE---eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 556776 358899988765 788999999999999999999854
No 198
>KOG2068|consensus
Probab=93.83 E-value=0.03 Score=43.77 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=43.7
Q ss_pred hhccCCCeeEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 4 LTGVYGDVLRVKILYNK--------KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 4 lF~~yG~V~~v~~~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
-|.+||.|.+|.+.+.. .--++|+|...++|..||+.-+|+.+.|+.|+..+.
T Consensus 100 yfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 100 YFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred cccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 48899999999766511 122799999999999999999999999998777664
No 199
>KOG2318|consensus
Probab=93.69 E-value=0.66 Score=39.17 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=62.8
Q ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhc---CCceeEEEEccC-------------CC----------------------
Q psy17274 98 PPSPTLHLSNIP-ASVTEDELKEAFTEK---GFTVKGFKFFPK-------------DR---------------------- 138 (184)
Q Consensus 98 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~---G~~v~~v~v~~~-------------~~---------------------- 138 (184)
.+++.|-|-||. ..+...||.-+|..| |+.|.+|.|.|. ++
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 368899999999 689999999998876 447999999761 01
Q ss_pred -----------------ceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEecC
Q psy17274 139 -----------------KMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFSK 175 (184)
Q Consensus 139 -----------------~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~~ 175 (184)
-||.|+|++++.|...-..|+|..+..+ -.|-+.|-.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 2799999999999999999999999864 355555544
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.47 E-value=0.6 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHhcCC----ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 110 ASVTEDELKEAFTEKGF----TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~----~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
..++..+|..++...+. .|-.|+|.. .++||+-.. +.|..++..|++..+.| ++++|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~-~~a~~v~~~l~~~~~~g-k~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPE-EVAEKVLEALNGKKIKG-KKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-T-T-HHHHHHHHTT--SSS-----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECH-HHHHHHHHHhcCCCCCC-eeEEEEEC
Confidence 67888889888877751 256677764 578888765 47999999999999999 89998753
No 201
>KOG3152|consensus
Probab=93.30 E-value=0.024 Score=42.70 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=41.4
Q ss_pred ChhhhccCCCeeEEEEeeC-----------CC------CeEEEEeCCHHHHHHHHHHhCCceecCcE
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----------KK------DSALIQMAESHQAHLAMMHMDKLRVFGKQ 50 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----------~~------g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 50 (184)
|.++++.||.|-+|-+... .+ .-|+|+|.+...|.+..+.|||..+.|++
T Consensus 91 lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 91 LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 4689999999999987651 01 12789999999999999999999999865
No 202
>KOG2135|consensus
Probab=92.62 E-value=0.069 Score=43.66 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=48.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|-..|.+||.|..|.+-.. .--|.|+|.+..+|-.|- ...+..|.+|.|+|.|.+..
T Consensus 390 ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 390 LNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhhhcCccccccccCc-hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 3467999999999987554 567999999999997776 67899999999999998754
No 203
>KOG2591|consensus
Probab=92.38 E-value=0.97 Score=38.07 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
-+++.|.-+|.+...|+++.||..-.. ++.++.+- ....=||+|++..||..|.+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylree 235 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREE 235 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHH
Confidence 355778999999999999999987331 67777654 2344599999999999998877543
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.30 E-value=0.26 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=27.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274 24 ALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53 (184)
Q Consensus 24 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 53 (184)
=||.|.+.++|+++....+|..+++..|..
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 479999999999999999999999887754
No 205
>KOG2253|consensus
Probab=91.96 E-value=0.12 Score=43.88 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
|.-++||+|+-..++.+-++.+...+| .|-+.+.. .+||++|..+.-+..|+..++-..++|+ .+-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g-~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~-kl~ 104 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSG-FVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQ-KLI 104 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCC-cchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcc-hhh
Confidence 567899999999999999999999999 66655433 2999999999999999999999999984 543
No 206
>KOG4019|consensus
Probab=90.88 E-value=0.33 Score=34.87 Aligned_cols=77 Identities=14% Similarity=0.288 Sum_probs=55.7
Q ss_pred EEEeCCCCCC-----CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-eEEEEecCc
Q psy17274 103 LHLSNIPASV-----TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQS-HLRVSFSKS 176 (184)
Q Consensus 103 l~v~nlp~~~-----t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~l~v~~~~~ 176 (184)
+.+-+++..+ ......++|.+|. +.....++ ++.+..-|-|.+++.|..|...++++.+.| + .++.-|+..
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n-~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~-~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQIN-EDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNG-KNELKLYFAQP 89 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhC-cchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCC-CceEEEEEccC
Confidence 4555555433 2334456777777 55445555 356677889999999999999999999999 7 899988887
Q ss_pred cccccc
Q psy17274 177 NIQDIR 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+...+
T Consensus 90 ~~~~~~ 95 (193)
T KOG4019|consen 90 GHPESN 95 (193)
T ss_pred CCcccc
Confidence 766554
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.18 E-value=1.2 Score=29.49 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=31.2
Q ss_pred eeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecC
Q psy17274 11 VLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFG 48 (184)
Q Consensus 11 V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 48 (184)
|..+++++. ++-.+++.|.+.++|..-.+.+||+.|..
T Consensus 41 i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 41 IEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 556777773 34579999999999999999999998853
No 208
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=87.65 E-value=6.9 Score=26.65 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCC---CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPAS---VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~---~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
....|.|+....+ .+-..+.+....-|..+.++.. ..+...|.|++.++..+|.+.|...--.+ ..+.+..+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~---~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~-y~VAlnl~p 109 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP---ENDSLLIRFDSPEQSAAAKEVLDRTLPHG-YIIAQQDDN 109 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe---eCCEEEEEECCHHHHHHHHHHHHHHcCCC-CEEEEecCC
Confidence 4567888876433 5677888999999966666643 44688999999999999999999888777 788888777
No 209
>KOG4483|consensus
Probab=83.88 E-value=3 Score=33.87 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ 157 (184)
-.+|-|.|.|...--+||...|+.|+..=.+|+.+ ....||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 36789999999998899999999998433456555 557899999999999999885
No 210
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=82.39 E-value=14 Score=30.35 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=60.5
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhc---CCceeEEEEccC--------------------------------------
Q psy17274 99 PSPTLHLSNIP-ASVTEDELKEAFTEK---GFTVKGFKFFPK-------------------------------------- 136 (184)
Q Consensus 99 ~~~~l~v~nlp-~~~t~~~l~~~F~~~---G~~v~~v~v~~~-------------------------------------- 136 (184)
+++.|-|-||+ ..+...+|.-+|+.| |+.+.+|.|.|.
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~ 224 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF 224 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence 78889999999 688999999888764 557888887650
Q ss_pred -------------CC-------------------ceEEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEecCc
Q psy17274 137 -------------DR-------------------KMALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFSKS 176 (184)
Q Consensus 137 -------------~~-------------------~~afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~~~ 176 (184)
.. -+|.|++++.+.+......++|..+..+ ..+.+.|...
T Consensus 225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 01 1689999999999999999999999864 3555555443
No 211
>KOG2416|consensus
Probab=82.12 E-value=0.49 Score=40.05 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=40.3
Q ss_pred cCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCc
Q psy17274 7 VYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQ 59 (184)
Q Consensus 7 ~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~ 59 (184)
..|.|...+| -.-+.-|||.|.+.++|.....+|+|..+. ++.|.+.|....
T Consensus 468 tgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 468 TGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred ccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 4666666542 223567999999999999999999999884 578999987644
No 212
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.94 E-value=9.3 Score=23.99 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=43.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~ 157 (184)
-|..-++...+..++++.++. ||..|.+|..... +..-|+|.+..-.+|.+....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 556668899999999999988 6877888876542 345799999998888887554
No 213
>KOG4410|consensus
Probab=79.00 E-value=5.5 Score=30.94 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=39.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCH
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~ 148 (184)
.-|+++|||.++.-.||+....+.|....++... ...+.||.+|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-cCCcceeEecCCc
Confidence 4599999999999999999999998556667654 4678999999874
No 214
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=78.62 E-value=13 Score=22.92 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=42.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~ 157 (184)
-|+..++...+..+++..++. ||..|..|.... .+-.-|+|.+..-++|.+.-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 567778899999999999988 676777776653 2345799999988888776443
No 215
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=75.90 E-value=6.7 Score=30.90 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.4
Q ss_pred EEEEeCCHHHHHHHHHHhCC
Q psy17274 24 ALIQMAESHQAHLAMMHMDK 43 (184)
Q Consensus 24 afV~f~~~~~A~~Ai~~l~g 43 (184)
|||.|.+..+|+.|.+.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999985544
No 216
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.43 E-value=4.3 Score=27.18 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=22.7
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCC
Q psy17274 102 TLHLSNIPAS---------VTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDS 147 (184)
Q Consensus 102 ~l~v~nlp~~---------~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~ 147 (184)
++.|.|+|.. .+.++|++.|+.|. .+ +++..-. .+++++|+|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~-p~-kv~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFN-PL-KVKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----S-EEEEEEETTEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcC-Cc-eeEECcCCCCCcEEEEEEECC
Confidence 4566777532 46789999999998 43 3444332 25899999996
No 217
>KOG4019|consensus
Probab=73.94 E-value=2.4 Score=30.56 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred hhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCc-EEEEEEccC
Q psy17274 3 SLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGK-QMRVMISKH 58 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~s~~ 58 (184)
+||.+|-+..-.++++ +.+..-|-|.+++.|..|.-.+++..|.|. .+.+-++..
T Consensus 34 ~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 34 NLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred hHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4566665554444433 557788999999999999999999999988 677766653
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=68.75 E-value=8.5 Score=30.01 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=58.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC------------CceEEEEeCCHHHHHH----HHHHhcCe-
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD------------RKMALLQLDSIEEAIT----ALIQMHNH- 161 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~------------~~~afV~f~~~~~A~~----Ai~~lng~- 161 (184)
.++.|.+.|+..+++--.+...|-+|| +|++|.+++.. .....+.|-+.+.+.. .++.|+-.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~-pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFG-PIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccC-ceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 467799999999999888889999999 99999999733 2567889999887754 44445433
Q ss_pred -ecCCCCeEEEEecCc
Q psy17274 162 -QLSEQSHLRVSFSKS 176 (184)
Q Consensus 162 -~i~g~~~l~v~~~~~ 176 (184)
.+.. ..|.++|..-
T Consensus 93 ~~L~S-~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKS-ESLTLSFVSL 107 (309)
T ss_pred HhcCC-cceeEEEEEE
Confidence 5666 6888888764
No 219
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=68.29 E-value=13 Score=23.23 Aligned_cols=35 Identities=6% Similarity=0.089 Sum_probs=25.6
Q ss_pred CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 10 DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 10 ~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
.|.+|-....-+||-|||=.++.++..|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46676655578999999999999999999877554
No 220
>KOG0804|consensus
Probab=64.89 E-value=9.8 Score=31.48 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=33.3
Q ss_pred CeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecC
Q psy17274 10 DVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFG 48 (184)
Q Consensus 10 ~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 48 (184)
.|..|++++. .+-+++|.|.+.++|..-.+.+||..|..
T Consensus 101 ~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 101 QISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 4778888883 45678999999999999999999998864
No 221
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.45 E-value=22 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCceeEEEEcc
Q psy17274 115 DELKEAFTEKGFTVKGFKFFP 135 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~ 135 (184)
.+||+.|++.| .|.-+-+-+
T Consensus 9 ~~iR~~fs~lG-~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLG-EIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcC-cEEEEEEcc
Confidence 57999999999 776555443
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.27 E-value=5.7 Score=27.38 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=52.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q psy17274 20 KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPP 99 (184)
Q Consensus 20 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (184)
..++..++|.+.+++.++++ .....+.|..+.++.-...... . . ..+.. -
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~--~-------------~---~~~~~-----------~ 103 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNP--S-------------E---VKFEH-----------I 103 (153)
T ss_pred CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccc--c-------------c---cceec-----------c
Confidence 57999999999999999884 3444555665555433210000 0 0 00000 0
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEc
Q psy17274 100 SPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFF 134 (184)
Q Consensus 100 ~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~ 134 (184)
.-=+.|.|||.. .+++-++.+-+.+| .+..+...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG-~~i~vD~~ 138 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIG-EPIEVDEN 138 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcC-CeEEEEcC
Confidence 112556799965 68888999999999 88777654
No 223
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=58.42 E-value=20 Score=25.12 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=28.6
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
|.+|.+...-+||.||+....+++..++..+.|.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 6677776678999999999899999999887664
No 224
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=57.28 E-value=44 Score=23.38 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 119 EAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 119 ~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
......+..|.++.+.+.-+||-||+.+..+++-.++..+.|.
T Consensus 27 ~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 27 MRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred HHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 3333345346677655555899999999889999999887764
No 225
>KOG2891|consensus
Probab=54.32 E-value=7.1 Score=30.22 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcc--------CC-------Cce---------EEEEeCCHHHHHHHHHHhcCeecC---
Q psy17274 112 VTEDELKEAFTEKGFTVKGFKFFP--------KD-------RKM---------ALLQLDSIEEAITALIQMHNHQLS--- 164 (184)
Q Consensus 112 ~t~~~l~~~F~~~G~~v~~v~v~~--------~~-------~~~---------afV~f~~~~~A~~Ai~~lng~~i~--- 164 (184)
-+++.|+..|+.|| .|..|.|.- ++ +|+ |+|+|...-.-..|+..|.|..+.
T Consensus 173 pse~rlr~a~eafg-~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~ 251 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFG-EIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKG 251 (445)
T ss_pred ChHHHHHHHHHHhc-cceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhc
Confidence 35888999999999 888777632 11 233 346666666667788888887542
Q ss_pred -CC---CeEEEEecCccc
Q psy17274 165 -EQ---SHLRVSFSKSNI 178 (184)
Q Consensus 165 -g~---~~l~v~~~~~~~ 178 (184)
|. -.++|.|.++.+
T Consensus 252 d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 252 DDGFFQANVKVDFDRSRH 269 (445)
T ss_pred CCcccccccccccchhhh
Confidence 21 257888877763
No 226
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=54.02 E-value=58 Score=21.09 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASV---TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~---t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
+.+.|.|+...... +...+.+..+.-|..+.++.. ..+.-.|.|++.++-.+|.+.|...-=++
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~---~~~~llirf~~~~~Ql~Ak~~L~~~L~~~ 96 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQ---EGDSLLIRFDSTDQQLKAKDVLSKALGDD 96 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEe---eCCEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 45667777653222 135889999999966666643 45778999999999999999887665444
No 227
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=52.79 E-value=38 Score=18.66 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCceeEEEEccCC--CceEEEEeCCHHHHHHHH
Q psy17274 115 DELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITAL 155 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~Ai 155 (184)
.++-+++.+.|..|..+.+.... .....+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45778899999888888776533 456667888988888775
No 228
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=52.78 E-value=44 Score=19.29 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=32.7
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-CceEEEEeCCHHHHHHHHHH
Q psy17274 104 HLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-RKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 104 ~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-~~~afV~f~~~~~A~~Ai~~ 157 (184)
.+.|-|-.+ .++-++|.+.|..|.++...+.. ++.--+.+++.+.|.+++..
T Consensus 7 ~v~d~pG~L--a~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 7 FLENKPGRL--AAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred EEcCCCChH--HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 344444444 46889999999888888766532 33334456666666666653
No 229
>KOG4008|consensus
Probab=50.97 E-value=15 Score=27.81 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF 131 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v 131 (184)
...+||+-|+|...|++-|....++.| .+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg-~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLG-HVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhh-hhhhe
Confidence 456799999999999999999999999 55443
No 230
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.30 E-value=24 Score=21.18 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 139 KMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 139 ~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
...+|.|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 367899999999999999998877655
No 231
>KOG1295|consensus
Probab=49.46 E-value=25 Score=28.54 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=48.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-------CceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-------RKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-------~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.+.|.+||+.+++++|.+-..++-..|....+.+.. -+.|+|.|..+++-..=....+|+.+-.
T Consensus 9 Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 9 KVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 477899999999999998888876445555444321 2578999999999888778888887644
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=49.25 E-value=1.3e+02 Score=23.72 Aligned_cols=161 Identities=11% Similarity=0.202 Sum_probs=84.1
Q ss_pred hhhccCCCeeEEEEeeCC------------CCeEEEEeCCHHHHHH----HHHHhCCc--eecCcEEEEEEccCccccCC
Q psy17274 3 SLTGVYGDVLRVKILYNK------------KDSALIQMAESHQAHL----AMMHMDKL--RVFGKQMRVMISKHQAVQLP 64 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~~------------~g~afV~f~~~~~A~~----Ai~~l~g~--~~~g~~l~v~~s~~~~~~~~ 64 (184)
..|.+||+|++|.++... .-...+.|-+.+.+-. .++.|+-+ .+....|.+.|..-......
T Consensus 34 ~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~ 113 (309)
T PF10567_consen 34 TKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFVSLNYQKKT 113 (309)
T ss_pred HHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEEeccccc
Confidence 568999999999988632 3567899999877543 23333222 34556777766542111000
Q ss_pred CCCCCCCCcccccCCCCCC-CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH-HHHH---HhcC---CceeEEEEccC
Q psy17274 65 KEGQPDAGLTKDYTASPLH-RFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDEL-KEAF---TEKG---FTVKGFKFFPK 136 (184)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l-~~~F---~~~G---~~v~~v~v~~~ 136 (184)
.+ .++.....++.....+ .... ...++.|.|. +...+..+++ .+.+ ..-+ ..+++|.++..
T Consensus 114 ~~-~~~~~~~~~~~~~~L~~~i~~---------~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna 182 (309)
T PF10567_consen 114 DP-NDEEADFSDYLVASLQYNIIN---------RGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNA 182 (309)
T ss_pred cc-cccccchhhHHhhhhhheeec---------CCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEEEEEEEEecc
Confidence 00 0000000000000000 0000 0146778776 3344434443 2222 1111 13788888752
Q ss_pred -------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 137 -------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 137 -------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.+.||.++|-+..-|.+.++.+.-....- ..-++.|-.
T Consensus 183 ~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~-~Iskc~fVs 227 (309)
T PF10567_consen 183 DEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKL-GISKCFFVS 227 (309)
T ss_pred CcccccCCcceEEEeehhHHhHHHHHHHHHhccccc-CcceEEEEe
Confidence 25799999999999999999887553332 244444443
No 233
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=48.28 E-value=29 Score=20.81 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.9
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCceec
Q psy17274 22 DSALIQMAESHQAHLAMMHMDKLRVF 47 (184)
Q Consensus 22 g~afV~f~~~~~A~~Ai~~l~g~~~~ 47 (184)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 57899999999999999888766553
No 234
>PRK11901 hypothetical protein; Reviewed
Probab=47.78 E-value=64 Score=25.75 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhcCCceeEEEEcc---CCC-ceEEE--EeCCHHHHHHHHHHhcCeec
Q psy17274 111 SVTEDELKEAFTEKGFTVKGFKFFP---KDR-KMALL--QLDSIEEAITALIQMHNHQL 163 (184)
Q Consensus 111 ~~t~~~l~~~F~~~G~~v~~v~v~~---~~~-~~afV--~f~~~~~A~~Ai~~lng~~i 163 (184)
.-+++.|..+-.+++ +..+.++. +++ .|..| .|.+.++|..|+..|--..-
T Consensus 253 as~~~~L~~f~~~~~--L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 253 ASRSDTLNAYAKKQN--LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCHHHHHHHHHHcC--cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 445888888888887 34555554 222 45444 79999999999998865443
No 235
>KOG0115|consensus
Probab=47.14 E-value=14 Score=28.31 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=39.0
Q ss_pred hhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceec----CcEEEEEE
Q psy17274 2 FSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVF----GKQMRVMI 55 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v~~ 55 (184)
.+-|+.||+|.+-.+.. ...+-++|+|...-.|..|...++-.-|. +++.-|..
T Consensus 49 ~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 49 EQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 45689999998765544 45677899999999999999887444333 45544543
No 236
>PF14893 PNMA: PNMA
Probab=46.78 E-value=31 Score=27.67 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCceeEEEEcc------CCCceEEEEeCCH
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFT----EKGFTVKGFKFFP------KDRKMALLQLDSI 148 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~----~~G~~v~~v~v~~------~~~~~afV~f~~~ 148 (184)
+.+.|.|.++|.+++++++.+... +.| ..+|.. .+...|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg----~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLG----RYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccc----cceehhhHhhhhcccceeeeecccc
Confidence 456799999999999988887754 455 344432 1246789998753
No 237
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=46.49 E-value=1e+02 Score=21.60 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEcc--CCCceEEEEeCCHHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFP--KDRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai 155 (184)
-++.-++...+..++++.++. |++.|..|..+. .+..-|+|.+..-.+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 566668899999999999987 776777776553 23357999998777766543
No 238
>KOG4849|consensus
Probab=46.42 E-value=16 Score=29.34 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q psy17274 19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRV 53 (184)
Q Consensus 19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 53 (184)
.++|||+|...+..+..+-++.|-.+++.|+.-.|
T Consensus 122 QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 122 QSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 37999999999999999999999999999976444
No 239
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=46.41 E-value=4.5 Score=32.25 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=35.6
Q ss_pred ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
+|++..++|+|..-.+.+ -+.|.+||-.-.++++.++++.|++.
T Consensus 278 iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 278 IFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred HHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 366777888887655444 36799999999999999999999875
No 240
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.87 E-value=53 Score=20.38 Aligned_cols=39 Identities=5% Similarity=-0.032 Sum_probs=27.6
Q ss_pred ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 127 TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 127 ~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
.|.++-..+.-+|+-|||=.+..+..+|+..+-+.....
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 477776555569999999999999999999887765543
No 241
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=45.85 E-value=24 Score=20.85 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.6
Q ss_pred hhccCCCeeEEEEeeCCCCeEEEEeCCH
Q psy17274 4 LTGVYGDVLRVKILYNKKDSALIQMAES 31 (184)
Q Consensus 4 lF~~yG~V~~v~~~~~~~g~afV~f~~~ 31 (184)
+|+.=|+|..++ ..||+|.|.-|
T Consensus 31 ife~~GEvl~ik-----gdYa~vr~~~P 53 (67)
T PF11910_consen 31 IFEGPGEVLDIK-----GDYAQVRFRVP 53 (67)
T ss_pred eecCCCeEEEec-----CCEEEEEecCC
Confidence 688889998875 68999999655
No 242
>KOG4365|consensus
Probab=44.97 E-value=2.7 Score=34.50 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=56.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
..++..+|...+++++.-+|+-|| .|..+...+.. .-.+|++-.+ .+|..++.-+--..+.| -.++++.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~-~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~-~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPS-IISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFE-SQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCc-ceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhh-hhhhhhcCch
Confidence 356778899999999999999999 88888776532 2356665443 56778888888888888 5899888876
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 5
No 243
>KOG2295|consensus
Probab=42.33 E-value=3.6 Score=34.77 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
..+.|++.|++++++-.+|..+|+.+- .+.++.+.. +-...+.|+|.--..-..|+-+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~-~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIP-GFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCc-hheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456799999999999999999999987 555554432 113567899998888888889999998876
No 244
>KOG2591|consensus
Probab=42.24 E-value=12 Score=31.84 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEE
Q psy17274 8 YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRV 53 (184)
Q Consensus 8 yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v 53 (184)
|-++.++.+-.+.. =||+|++..||+.|...|.-. +|.|++|..
T Consensus 201 cPk~iscefa~N~n--WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 201 CPKVISCEFAHNDN--WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CCCceeeeeeecCc--eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 44555555444332 379999999999999888653 677877654
No 245
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=41.47 E-value=64 Score=17.91 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcee
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVK 129 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~ 129 (184)
.+++.+..+..+.++|.++...+|+.+.
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~v~ 30 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGKVT 30 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCEEe
Confidence 5777777668889999999999996443
No 246
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.53 E-value=1e+02 Score=19.44 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCceeEEEEccCCC-ceEEEEeCCHHHHHHHHHHhc
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPKDR-KMALLQLDSIEEAITALIQMH 159 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~~~-~~afV~f~~~~~A~~Ai~~ln 159 (184)
.+.++.+.+..|+++.++.+....- -...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 5668899999998888887765332 456789999998888765544
No 247
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=38.31 E-value=1.7e+02 Score=25.56 Aligned_cols=95 Identities=8% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc----cC-CCCCCCCCCCCCCCCCC
Q psy17274 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD----YT-ASPLHRFKKPGSKNFQN 95 (184)
Q Consensus 21 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 95 (184)
.--||+++.++..-+.--+.|+-..+++-.|.=- ++.-.++..| |. ..+++-|..|+.-
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~------------GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl---- 299 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGV------------GPRYCPSIEDKIVRFADKERHQIFLEPEGL---- 299 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhccccccc------------CCCCCCCHHHhhccCCCCccceEEecCCCC----
Confidence 3459999999999888888888887776443310 1111112111 11 1223345555433
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc
Q psy17274 96 IYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP 135 (184)
Q Consensus 96 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~ 135 (184)
.+..+|+.+|..++.++.=.++..... ..+++.+++
T Consensus 300 ---~~~evY~nGlSTSlP~dVQ~~~irsip-GlEna~i~r 335 (621)
T COG0445 300 ---DTDEVYPNGLSTSLPEDVQEQIIRSIP-GLENAEILR 335 (621)
T ss_pred ---CCceEecCcccccCCHHHHHHHHHhCc-ccccceeec
Confidence 356799999999998887788887776 578887763
No 248
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=38.21 E-value=77 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=29.4
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCceecC-----cEEEEEEccCccc
Q psy17274 22 DSALIQMAESHQAHLAMMHMDKLRVFG-----KQMRVMISKHQAV 61 (184)
Q Consensus 22 g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~s~~~~~ 61 (184)
.-|+|.|.+.+++..-.+.++|..|-+ .+-.|++|-.+.+
T Consensus 56 SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 56 SRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS---
T ss_pred eEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhcc
Confidence 459999999999999999999988853 3456787776554
No 249
>KOG2187|consensus
Probab=37.55 E-value=30 Score=29.38 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 137 DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 137 ~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
...++++.|++++.+.+|+..++|....+ ..+++..+...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~-~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKG-FILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhc-chhhhhhcccc
Confidence 46899999999999999999999999999 68877766554
No 250
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.90 E-value=28 Score=18.02 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHhcC
Q psy17274 110 ASVTEDELKEAFTEKG 125 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G 125 (184)
..+++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998765
No 251
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=36.22 E-value=26 Score=20.91 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=17.7
Q ss_pred CCCeeEEEEeeCCCCeEEEEeCCHH
Q psy17274 8 YGDVLRVKILYNKKDSALIQMAESH 32 (184)
Q Consensus 8 yG~V~~v~~~~~~~g~afV~f~~~~ 32 (184)
-|.|.+++. .++|+||++..|..
T Consensus 5 ~g~v~~i~~--tk~g~~~~~L~D~~ 27 (78)
T cd04489 5 EGEISNLKR--PSSGHLYFTLKDED 27 (78)
T ss_pred EEEEecCEE--CCCcEEEEEEEeCC
Confidence 477888886 45679999998875
No 252
>KOG2187|consensus
Probab=35.55 E-value=20 Score=30.34 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 19 NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 19 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
....+|++.|++++.+..|+..++|..+.+..+++....
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~ 99 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGA 99 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcc
Confidence 457899999999999999999999999988888877654
No 253
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.52 E-value=85 Score=17.64 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhcCCceeEEEEccC-CCceEE--EEeCC--HHHHHHHHHHh
Q psy17274 113 TEDELKEAFTEKGFTVKGFKFFPK-DRKMAL--LQLDS--IEEAITALIQM 158 (184)
Q Consensus 113 t~~~l~~~F~~~G~~v~~v~v~~~-~~~~af--V~f~~--~~~A~~Ai~~l 158 (184)
.-.++-.+|+.+|..|..+...+. ..+.+. +...+ ..++.++++.+
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~ 62 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKI 62 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcC
Confidence 456788999999977887876542 234544 44443 33344444433
No 254
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.28 E-value=69 Score=24.74 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKG 125 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G 125 (184)
.....|+|||+++|..-+..++...-
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~ 120 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKF 120 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccC
Confidence 34578999999999999999988765
No 255
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.96 E-value=92 Score=17.86 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCceeEEEEccC--C-CceEEEEeCCHHHHHHHHHHh
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPK--D-RKMALLQLDSIEEAITALIQM 158 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~--~-~~~afV~f~~~~~A~~Ai~~l 158 (184)
-.++-++|..+|..|..+...+. . .+...+.++..++..++++.|
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 45788999999987877765542 2 345567776655656655554
No 256
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.67 E-value=1.1e+02 Score=18.31 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=26.7
Q ss_pred hhhccCCCeeEEEEeeCC--CCeEEEEeCCHHHHHHHHHHh
Q psy17274 3 SLTGVYGDVLRVKILYNK--KDSALIQMAESHQAHLAMMHM 41 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~~--~g~afV~f~~~~~A~~Ai~~l 41 (184)
+....+| +.-.++.. + .++.|+-+.+.+.++++.+.+
T Consensus 41 ~~~~~~G-a~~~~~sG-sG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 41 EAAEENG-ALGAKMSG-SGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHTT-ESEEEEET-TSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHCC-CCceecCC-CCCCCeEEEEECCHHHHHHHHHHH
Confidence 4556777 44555443 4 788888888999999888776
No 257
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.96 E-value=3.4e+02 Score=23.77 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=58.1
Q ss_pred CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC--Ccee------cCcEEEEEEccCccccCCCCCCCCCCcccccCCCC
Q psy17274 10 DVLRVKILYNKKDSALIQMAESHQAHLAMMHMD--KLRV------FGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASP 81 (184)
Q Consensus 10 ~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~------~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
-|.+|.+. .+||=.+......-+....+.+. +..+ .|+++.|+++..
T Consensus 72 ~~~~veia--GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa----------------------- 126 (577)
T COG0018 72 IIEKVEIA--GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA----------------------- 126 (577)
T ss_pred cEeEEEEc--CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC-----------------------
Confidence 46666653 45777777776666666555555 2222 367888888761
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc
Q psy17274 82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF 134 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~ 134 (184)
| |+..+||+.+=.++=-+-|-.+++..|..|++..-+
T Consensus 127 ----------N------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yv 163 (577)
T COG0018 127 ----------N------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYV 163 (577)
T ss_pred ----------C------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeE
Confidence 1 555699999988888899999999999767766544
No 258
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=32.20 E-value=33 Score=20.39 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274 115 DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln 159 (184)
+++...|..++ ...++ -+-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~-~f~k~-----vkL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPE-KFSKI-----VKLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHH-HHhhh-----hhhhhccCCCCHHHHHHHHHHhh
Confidence 57777776655 33222 12359999999999999887654
No 259
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.18 E-value=97 Score=17.28 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCceeEEEEccCC-CceE--EEEeCCHHHHHHHHHH
Q psy17274 115 DELKEAFTEKGFTVKGFKFFPKD-RKMA--LLQLDSIEEAITALIQ 157 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~~~-~~~a--fV~f~~~~~A~~Ai~~ 157 (184)
.++-+++.++|..|.++...+.. .+.+ .++.++.+.+.++++.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 46778899999778777655432 2344 5566677777777664
No 260
>KOG2318|consensus
Probab=31.55 E-value=74 Score=27.49 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=28.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEc
Q psy17274 23 SALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMIS 56 (184)
Q Consensus 23 ~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s 56 (184)
||.|+|.+++.|....+..+|..|.. ..|-+.|-
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 69999999999999999999999974 55555553
No 261
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=30.62 E-value=1.2e+02 Score=17.99 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCceeEEEEccCC-C---ceEEEEeC-CHHHHHHHHHHhcC
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPKD-R---KMALLQLD-SIEEAITALIQMHN 160 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~~-~---~~afV~f~-~~~~A~~Ai~~lng 160 (184)
=.++.+.|+.+|..+.+|.--|.. + -.-||+++ ..++-.+|+..|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456888999999778888655522 1 13467877 44455667777654
No 262
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=30.52 E-value=77 Score=19.97 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 111 SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 111 ~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
++|..+|..+..+||..| +.++|...+..|.|..++
T Consensus 14 ~iT~~eLlkyskqy~i~i------------------t~~QA~~I~~~lr~k~in 49 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI------------------TKKQAEQIANILRGKNIN 49 (85)
T ss_pred cCCHHHHHHHHHHhCCCC------------------CHHHHHHHHHHHhcCCCC
Confidence 578999999999999322 357888888888887664
No 263
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=29.27 E-value=1.6e+02 Score=18.83 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCceeEEEEccCC--CceEEEEeCCHHHHHHHHHHhcC
Q psy17274 107 NIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 107 nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~Ai~~lng 160 (184)
.+-+.++...+..-|-.-|-+-....+- ++ +.+|.|+|.+.+.+..|...|-.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHHHH
Confidence 4556777776666665555111111111 22 67999999999999999887643
No 264
>PRK10905 cell division protein DamX; Validated
Probab=28.82 E-value=1.7e+02 Score=23.39 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEEcc---CCC-ceEEE--EeCCHHHHHHHHHHhcCe
Q psy17274 110 ASVTEDELKEAFTEKGFTVKGFKFFP---KDR-KMALL--QLDSIEEAITALIQMHNH 161 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~~v~~v~v~~---~~~-~~afV--~f~~~~~A~~Ai~~lng~ 161 (184)
-.-+++.|+.+-.++|. ....++. +++ .|-.+ .|.+.++|.+|+..|=..
T Consensus 254 A~Ss~~~l~~fakKlgL--~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 254 SSSNYDNLNGWAKKENL--KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ecCCHHHHHHHHHHcCC--CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 34457889998888873 3333333 233 33333 789999999999987543
No 265
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=28.42 E-value=1.7e+02 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHhcCCceeEEEEcc
Q psy17274 108 IPASVTEDELKEAFTEKGFTVKGFKFFP 135 (184)
Q Consensus 108 lp~~~t~~~l~~~F~~~G~~v~~v~v~~ 135 (184)
|...+|.++|++++..|-..=.-|+|.+
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~ 280 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVP 280 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 4556899999999988642222455554
No 266
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.38 E-value=1.2e+02 Score=19.12 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=25.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEc
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFF 134 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~ 134 (184)
-+...++..++..++++.++. ||..|.+|...
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~ 54 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTM 54 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEe
Confidence 566678999999999999977 67677777654
No 267
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=28.14 E-value=1.5e+02 Score=21.82 Aligned_cols=53 Identities=25% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHhcCCc--eeEEEEccCC--CceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 112 VTEDELKEAFTEKGFT--VKGFKFFPKD--RKMALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 112 ~t~~~l~~~F~~~G~~--v~~v~v~~~~--~~~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
.+.+++.+.....|.. |....+.-.+ ++-|.---.++++|..+.+.|-|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 3578899999888842 5555555433 443444455899999999999999887
No 268
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.60 E-value=64 Score=19.38 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=11.9
Q ss_pred EEEEccCCCceEEEEeCC
Q psy17274 130 GFKFFPKDRKMALLQLDS 147 (184)
Q Consensus 130 ~v~v~~~~~~~afV~f~~ 147 (184)
.|+.+...+|+|||+=.+
T Consensus 8 ~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred EEEEEECCCCeEEEccCC
Confidence 355555678999886544
No 269
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=27.11 E-value=72 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCcE-EEEEEc
Q psy17274 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQ-MRVMIS 56 (184)
Q Consensus 21 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~s 56 (184)
.+.|||+|++..+|+.|-+..-+....+.. ..+.++
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapa 393 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPA 393 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCC
Confidence 468999999999999999876555554443 444443
No 270
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.33 E-value=2.5e+02 Score=21.64 Aligned_cols=61 Identities=26% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEE----EEe--CCHHHHHHHHHHhcCee
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMAL----LQL--DSIEEAITALIQMHNHQ 162 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~af----V~f--~~~~~A~~Ai~~lng~~ 162 (184)
+++|.+.+++++.=...|.++...+. .+ .|.-.+......+ |.. .+.+.|.+++..+-+..
T Consensus 180 ~~~~~~~gi~ES~la~~L~~i~~~~~-~~-~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 246 (255)
T COG1058 180 SRVLRVFGIGESSLAPTLKDLQDEQP-NV-TIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEGRL 246 (255)
T ss_pred EEEEEEcCCChHHHHHHHHHHHhcCC-CC-EEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHHHH
Confidence 56788999999888999999999885 33 3544553333323 655 68888888887765543
No 271
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.30 E-value=1.2e+02 Score=25.87 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=28.1
Q ss_pred cCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCC
Q psy17274 7 VYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDK 43 (184)
Q Consensus 7 ~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g 43 (184)
.+|-|+++.+-- ......++.|.+.++|..|+..+..
T Consensus 216 tlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 688899876543 2346678999999999999987643
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.25 E-value=1.3e+02 Score=16.83 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=40.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCH----HHHHHHHHH
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI----EEAITALIQ 157 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~----~~A~~Ai~~ 157 (184)
++.|.|+.-.-....+...+...- .|..+.+.. ..+.+-|.|... ++-.++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~-GV~~v~vd~-~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP-GVKSVKVDL-ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-TEEEEEEET-TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCC-CCcEEEEEC-CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467888887777888988888886 688888864 668889998854 455555554
No 273
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=26.20 E-value=2.2e+02 Score=19.46 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=26.4
Q ss_pred hcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 123 EKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 123 ~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.-|..+..+.+...-+||-||+++...+...++..+.|.
T Consensus 23 ~~~~~~~~~~vp~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 23 KSGLEVYSILAPESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred hCCCcEEEEEccCCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 445344445444345899999999887778888777664
No 274
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=25.38 E-value=78 Score=19.22 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=10.2
Q ss_pred EEEccCCCceEEEEeC
Q psy17274 131 FKFFPKDRKMALLQLD 146 (184)
Q Consensus 131 v~v~~~~~~~afV~f~ 146 (184)
|+.+...||+|||+=.
T Consensus 6 Vkwfn~~KGfGFI~~~ 21 (74)
T PRK09937 6 VKWFNNAKGFGFICPE 21 (74)
T ss_pred EEEEeCCCCeEEEeeC
Confidence 4455556888888543
No 275
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=25.18 E-value=2.6e+02 Score=23.84 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=37.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH----hcCCceeEEEE--ccC--CCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFT----EKGFTVKGFKF--FPK--DRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~----~~G~~v~~v~v--~~~--~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
..+.++.-....+..+|..+|. .+| -|+++.+ .|. .....++.|.+.++|..|+..+..
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlG-IIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLG-VVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccE-EEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 4444443222233456777775 466 6776655 332 245668899999999999988654
No 276
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.63 E-value=94 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=21.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--hcC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFT--EKG 125 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~--~~G 125 (184)
...+.|+|||+.++..-|..++. .+|
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g 124 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFG 124 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGC
T ss_pred CceEEEEEecccchHHHHHHHhhccccc
Confidence 45688999999999999999987 455
No 277
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.28 E-value=79 Score=18.81 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=11.0
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=++
T Consensus 8 Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 8 VKWFNESKGFGFITPAD 24 (69)
T ss_pred EEEEeCCCCcEEEecCC
Confidence 44555568888887443
No 278
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.21 E-value=1.7e+02 Score=17.37 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=34.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCC
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~ 147 (184)
+|.|.++.-.-....+..-...-. .|..+.+.. .++.+.|.|++
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~-gv~~v~v~l-~~~~~~V~~d~ 48 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVD-GVASVDVDL-EKGTATVTFDS 48 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCC-CeeEEEEEc-ccCeEEEEEcC
Confidence 577777776666778888888887 688888875 66779999998
No 279
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.99 E-value=92 Score=18.44 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhcCCceeEEEEccCC---CceEEE
Q psy17274 112 VTEDELKEAFTEKGFTVKGFKFFPKD---RKMALL 143 (184)
Q Consensus 112 ~t~~~l~~~F~~~G~~v~~v~v~~~~---~~~afV 143 (184)
.-+.+|...|-+-. .|..+.+..+. +|.|||
T Consensus 30 ~~e~eler~fl~~P-~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLP-EVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCC-CceEEEEEEEEeeeCCceeE
Confidence 34667777787766 88888887543 577776
No 280
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=23.90 E-value=82 Score=18.73 Aligned_cols=17 Identities=12% Similarity=0.473 Sum_probs=10.9
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=.+
T Consensus 8 Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 8 VKWFNESKGFGFITPED 24 (69)
T ss_pred EEEEeCCCCcEEEecCC
Confidence 44454568888887544
No 281
>PRK15463 cold shock-like protein CspF; Provisional
Probab=23.58 E-value=86 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=11.0
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=.+
T Consensus 9 Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 9 VKTFDGKSGKGLITPSD 25 (70)
T ss_pred EEEEeCCCceEEEecCC
Confidence 44555568888886543
No 282
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=23.54 E-value=1.8e+02 Score=17.41 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCceeEEEEccCC--Cc--eEEEEeCC---HHHHHHHHHHhcC
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPKD--RK--MALLQLDS---IEEAITALIQMHN 160 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~~--~~--~afV~f~~---~~~A~~Ai~~lng 160 (184)
=.++-++|+++|..+.++...|.. .+ .-+|+++. .++..++++.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456889999999788888766532 22 34566663 4555667776665
No 283
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.53 E-value=1.7e+02 Score=17.18 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCceeEEEEccCC--C--ceEEEEeCC---HHHHHHHHHHhcC
Q psy17274 114 EDELKEAFTEKGFTVKGFKFFPKD--R--KMALLQLDS---IEEAITALIQMHN 160 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~~~~--~--~~afV~f~~---~~~A~~Ai~~lng 160 (184)
=.++.+.|+.+|..+.+|.-.|.. . -.-||+++. ......+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 457889999999888888555422 1 245788874 4555566666544
No 284
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=22.95 E-value=1.9e+02 Score=17.66 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=41.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-Cc---eEEEEeCCHHHHHHHHHHhcCe
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-RK---MALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-~~---~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.+++.|-|.-+. .+-.+|++.|+.|+++.+-+.. .+ .-++...+........+.|+..
T Consensus 6 si~v~n~pGVL~--Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSVLL--RISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCHHH--HHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 467778776664 5889999999889999876532 33 3455567888777777777653
No 285
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.94 E-value=1.5e+02 Score=16.43 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhcCCceeEEEEccCC-CceEEEEe
Q psy17274 112 VTEDELKEAFTEKGFTVKGFKFFPKD-RKMALLQL 145 (184)
Q Consensus 112 ~t~~~l~~~F~~~G~~v~~v~v~~~~-~~~afV~f 145 (184)
-.-.++.++|+++|..|..+...... .+.+.+.|
T Consensus 11 g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04879 11 GVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVL 45 (71)
T ss_pred CHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEE
Confidence 34567889999999888888776543 25554443
No 286
>CHL00030 rpl23 ribosomal protein L23
Probab=22.53 E-value=2e+02 Score=18.34 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEcc
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFP 135 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~ 135 (184)
-|+.-++...+..++++.++. ||+.|..|....
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 566778899999999999988 787787776653
No 287
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=22.43 E-value=2e+02 Score=18.25 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEc
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFF 134 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~ 134 (184)
-++..++...+..++++.++. ||+.|.+|...
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 566678899999999999988 77677777654
No 288
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.34 E-value=2.3e+02 Score=18.29 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCcee----EEEEccC---CCceEEEEeCCHHHHHHHH
Q psy17274 116 ELKEAFTEKGFTVK----GFKFFPK---DRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 116 ~l~~~F~~~G~~v~----~v~v~~~---~~~~afV~f~~~~~A~~Ai 155 (184)
.....|++||+... .+..+.. ......|+|.|.+.|..+-
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 35678999985321 1111111 1357899999999888753
No 289
>KOG0862|consensus
Probab=22.29 E-value=83 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=11.9
Q ss_pred CCCceEEEEeCCHHH
Q psy17274 136 KDRKMALLQLDSIEE 150 (184)
Q Consensus 136 ~~~~~afV~f~~~~~ 150 (184)
-.|.++||+|++.-.
T Consensus 107 ~~RPY~FieFD~~IQ 121 (216)
T KOG0862|consen 107 ASRPYAFIEFDTFIQ 121 (216)
T ss_pred cCCCeeEEehhHHHH
Confidence 468999999998543
No 290
>PRK14998 cold shock-like protein CspD; Provisional
Probab=21.92 E-value=98 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=10.3
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=.+
T Consensus 6 Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 6 VKWFNNAKGFGFICPEG 22 (73)
T ss_pred EEEEeCCCceEEEecCC
Confidence 44454567888876443
No 291
>PHA02754 hypothetical protein; Provisional
Probab=21.87 E-value=1.8e+02 Score=16.86 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCceeEEEEccCC
Q psy17274 115 DELKEAFTEKGFTVKGFKFFPKD 137 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~~~ 137 (184)
.+|+++.+..|.-|.+++.+-.+
T Consensus 21 RelkD~LSe~GiYi~RIkai~~S 43 (67)
T PHA02754 21 RELKDILSEAGIYIDRIKAITTS 43 (67)
T ss_pred HHHHHHHhhCceEEEEEEEEEec
Confidence 35788899999668888877533
No 292
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=21.86 E-value=1.6e+02 Score=17.81 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCcee
Q psy17274 20 KKDSALIQMAESHQAHLAMMHMDKLRV 46 (184)
Q Consensus 20 ~~g~afV~f~~~~~A~~Ai~~l~g~~~ 46 (184)
.++..++.|+..++-..|. .|.|..+
T Consensus 53 ~~~~~i~~~~gi~~r~~Ae-~l~g~~l 78 (84)
T PF01782_consen 53 HGKSLIVKFEGIDDREAAE-ALRGCEL 78 (84)
T ss_dssp ETTEEEEEETT--SHHHHH-TTTT-EE
T ss_pred eCCEEEEEEcCCCCHHHHH-hhCCCEE
Confidence 4788999999999988887 5555543
No 293
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=21.71 E-value=1e+02 Score=18.18 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=11.9
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=.+
T Consensus 6 Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 6 VKWFNNAKGFGFICPEG 22 (68)
T ss_pred EEEEeCCCCeEEEecCC
Confidence 44555678999997655
No 294
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=21.47 E-value=2e+02 Score=19.45 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 110 ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.+++++|+.-+.++.|+ +.++|.+||+.-+|-
T Consensus 81 ~~i~eeDIkLV~eQa~V--------------------sreeA~kAL~e~~GD 112 (122)
T COG1308 81 SDISEEDIKLVMEQAGV--------------------SREEAIKALEEAGGD 112 (122)
T ss_pred CCCCHHHHHHHHHHhCC--------------------CHHHHHHHHHHcCCc
Confidence 46899999999999981 368899999887764
No 295
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=21.44 E-value=1.7e+02 Score=16.62 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEEccC-CCceEEE--EeCC--HHHHHHHHHHhcC
Q psy17274 110 ASVTEDELKEAFTEKGFTVKGFKFFPK-DRKMALL--QLDS--IEEAITALIQMHN 160 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~G~~v~~v~v~~~-~~~~afV--~f~~--~~~A~~Ai~~lng 160 (184)
..-.-.++.++++++|..|.++...+. ..+.+.+ +.++ +.+..++++.+.|
T Consensus 9 ~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~ 64 (73)
T cd04902 9 RPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPG 64 (73)
T ss_pred CCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 333456688999999977877766543 2344444 4333 2344455555443
No 296
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.33 E-value=77 Score=16.24 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=6.5
Q ss_pred CHHHHHHHHH
Q psy17274 147 SIEEAITALI 156 (184)
Q Consensus 147 ~~~~A~~Ai~ 156 (184)
++|||.+|+.
T Consensus 24 tpEDAvEaLi 33 (35)
T PF08383_consen 24 TPEDAVEALI 33 (35)
T ss_pred CHHHHHHHHh
Confidence 5677777653
No 297
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=20.66 E-value=78 Score=18.41 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=9.1
Q ss_pred EEEEccCCCceEEEEeC
Q psy17274 130 GFKFFPKDRKMALLQLD 146 (184)
Q Consensus 130 ~v~v~~~~~~~afV~f~ 146 (184)
.|++. ..+.-+||+|+
T Consensus 11 yVRv~-~~~~~gfVEFe 26 (59)
T PF06099_consen 11 YVRVT-GRRDDGFVEFE 26 (59)
T ss_pred EEEEe-cccCCCeEEEE
Confidence 45554 24566777765
No 298
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=20.57 E-value=83 Score=17.77 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=11.1
Q ss_pred EeCCHHHHHHHHHHh
Q psy17274 144 QLDSIEEAITALIQM 158 (184)
Q Consensus 144 ~f~~~~~A~~Ai~~l 158 (184)
.|.+.++|.+|...|
T Consensus 39 ~Y~t~~eA~~Aa~~L 53 (53)
T PF14882_consen 39 FYPTYEEASKAAIKL 53 (53)
T ss_pred ccCCHHHHHHHHHhC
Confidence 466888888887654
Done!