Query psy17274
Match_columns 184
No_of_seqs 161 out of 1307
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:48:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 100.0 2E-37 6.9E-42 228.0 17.3 171 1-173 22-203 (205)
2 1qm9_A Polypyrimidine tract-bi 100.0 2.5E-37 8.7E-42 226.1 17.4 177 1-178 21-198 (198)
3 2adc_A Polypyrimidine tract-bi 100.0 6.7E-37 2.3E-41 228.9 19.9 177 1-178 52-229 (229)
4 3pgw_A U1-A; protein-RNA compl 100.0 1.5E-32 5.1E-37 210.9 21.7 174 1-176 30-282 (282)
5 3md3_A Nuclear and cytoplasmic 100.0 8E-33 2.8E-37 196.1 16.7 141 1-176 17-166 (166)
6 4f02_A Polyadenylate-binding p 100.0 7.9E-33 2.7E-37 204.7 13.8 142 1-177 32-181 (213)
7 1fxl_A Paraneoplastic encephal 100.0 1E-31 3.5E-36 190.6 16.3 137 1-174 19-167 (167)
8 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-31 5.4E-36 190.0 16.3 138 1-174 20-168 (168)
9 2qfj_A FBP-interacting repress 100.0 3.9E-31 1.3E-35 195.2 16.9 153 1-179 45-207 (216)
10 2yh0_A Splicing factor U2AF 65 100.0 3.8E-30 1.3E-34 187.5 17.2 160 1-179 21-196 (198)
11 3nmr_A Cugbp ELAV-like family 100.0 1.6E-30 5.5E-35 185.8 14.6 140 1-175 20-175 (175)
12 2g4b_A Splicing factor U2AF 65 100.0 2.7E-30 9.2E-35 184.4 14.8 136 1-175 21-172 (172)
13 1l3k_A Heterogeneous nuclear r 100.0 3E-30 1E-34 187.8 15.3 145 1-178 30-184 (196)
14 1fje_B Nucleolin RBD12, protei 100.0 6.9E-31 2.4E-35 188.2 9.6 141 1-177 30-174 (175)
15 2cjk_A Nuclear polyadenylated 100.0 2.3E-30 7.8E-35 184.0 10.9 137 1-177 20-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 1E-29 3.5E-34 195.2 14.9 144 1-178 112-265 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-29 1.1E-33 193.2 15.6 146 1-177 134-291 (292)
18 3smz_A Protein raver-1, ribonu 100.0 1.4E-28 4.7E-33 189.0 17.8 133 1-178 39-176 (284)
19 3sde_A Paraspeckle component 1 100.0 6.9E-29 2.4E-33 188.8 15.9 133 1-177 39-179 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 9.4E-28 3.2E-32 185.0 15.9 133 1-177 58-197 (292)
21 2i2y_A Fusion protein consists 99.9 5.6E-27 1.9E-31 164.2 12.2 138 19-178 11-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-25 8.4E-30 157.1 15.0 140 14-177 3-150 (158)
23 3r27_A HnRNP L, heterogeneous 99.9 4.3E-23 1.5E-27 133.8 10.7 77 98-177 19-97 (100)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-22 5.9E-27 131.7 10.4 76 99-176 18-98 (99)
25 2cq1_A PTB-like protein L; RRM 99.9 5.4E-22 1.9E-26 129.6 12.0 83 96-181 11-95 (101)
26 1wex_A Hypothetical protein (r 99.9 5.8E-22 2E-26 130.2 11.9 80 97-179 12-93 (104)
27 1sjq_A Polypyrimidine tract-bi 99.9 2.2E-22 7.4E-27 131.8 9.5 79 99-180 15-95 (105)
28 1x4d_A Matrin 3; structural ge 99.9 5.3E-22 1.8E-26 129.7 9.2 76 99-177 14-92 (102)
29 2ad9_A Polypyrimidine tract-bi 99.9 1.3E-21 4.6E-26 131.0 10.6 81 97-180 28-110 (119)
30 2wbr_A GW182, gawky, LD47780P; 99.9 2E-21 6.9E-26 122.0 10.1 74 99-175 6-79 (89)
31 1x4f_A Matrin 3; structural ge 99.9 1.9E-21 6.6E-26 128.8 9.6 78 97-177 22-102 (112)
32 2lxi_A RNA-binding protein 10; 99.9 1.1E-21 3.7E-26 126.0 7.8 79 100-179 1-85 (91)
33 3s8s_A Histone-lysine N-methyl 99.9 3.9E-21 1.3E-25 127.6 10.0 77 99-177 5-86 (110)
34 2lea_A Serine/arginine-rich sp 99.8 1.8E-21 6.1E-26 133.9 7.7 120 22-179 5-129 (135)
35 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.4E-20 1.1E-24 121.6 13.5 80 99-180 14-96 (103)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.4E-21 3.2E-25 119.9 10.1 75 99-175 6-85 (85)
37 4f25_A Polyadenylate-binding p 99.8 8E-21 2.7E-25 127.1 10.1 76 100-177 5-83 (115)
38 2cpj_A Non-POU domain-containi 99.8 1.3E-20 4.5E-25 122.7 10.6 78 98-178 13-90 (99)
39 2x1f_A MRNA 3'-END-processing 99.8 1.5E-20 5.2E-25 121.7 10.9 78 99-178 1-83 (96)
40 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-20 4.4E-25 119.8 10.0 77 99-177 5-86 (87)
41 1why_A Hypothetical protein ri 99.8 1.9E-20 6.6E-25 121.5 11.0 77 99-178 16-94 (97)
42 2cqc_A Arginine/serine-rich sp 99.8 2E-20 6.9E-25 120.8 11.0 76 99-176 14-94 (95)
43 2e5h_A Zinc finger CCHC-type a 99.8 3.6E-20 1.2E-24 119.4 12.0 75 99-175 15-94 (94)
44 2a3j_A U1 small nuclear ribonu 99.8 1.9E-20 6.5E-25 127.2 11.1 78 99-178 28-111 (127)
45 2ytc_A PRE-mRNA-splicing facto 99.8 1.6E-20 5.5E-25 118.8 10.1 74 99-175 11-85 (85)
46 3zzy_A Polypyrimidine tract-bi 99.8 2.2E-20 7.4E-25 126.6 10.8 83 99-182 25-111 (130)
47 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-20 3.7E-25 134.2 9.8 136 26-178 11-153 (165)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.4E-20 8.3E-25 122.0 10.5 80 99-180 11-95 (102)
49 2dgx_A KIAA0430 protein; RRM d 99.8 4.3E-20 1.5E-24 119.6 11.5 79 99-179 8-92 (96)
50 2cq3_A RNA-binding protein 9; 99.8 8.8E-20 3E-24 119.6 12.9 79 99-179 14-95 (103)
51 2dnz_A Probable RNA-binding pr 99.8 4.3E-20 1.5E-24 119.3 11.2 79 99-179 4-87 (95)
52 2e5i_A Heterogeneous nuclear r 99.8 1E-19 3.6E-24 122.7 13.4 81 99-181 22-106 (124)
53 1x4a_A Splicing factor, argini 99.8 1.3E-19 4.4E-24 120.0 13.4 78 99-178 21-100 (109)
54 2cph_A RNA binding motif prote 99.8 7.7E-20 2.6E-24 120.6 12.3 78 99-178 14-98 (107)
55 1x5s_A Cold-inducible RNA-bind 99.8 5.1E-20 1.8E-24 120.5 11.2 79 99-179 11-94 (102)
56 2xnq_A Nuclear polyadenylated 99.8 5.7E-20 2E-24 119.3 11.3 76 98-178 20-96 (97)
57 2dnq_A RNA-binding protein 4B; 99.8 4.7E-20 1.6E-24 118.0 10.4 76 99-179 7-82 (90)
58 2lkz_A RNA-binding protein 5; 99.8 1E-20 3.4E-25 122.3 7.3 76 100-176 9-94 (95)
59 3md1_A Nuclear and cytoplasmic 99.8 4E-20 1.4E-24 116.4 9.9 75 101-177 2-81 (83)
60 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-19 4.8E-24 117.8 12.8 77 98-179 13-91 (99)
61 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.5E-24 117.7 12.8 78 99-178 16-97 (100)
62 1whw_A Hypothetical protein ri 99.8 6.9E-20 2.3E-24 119.2 11.0 79 99-179 7-90 (99)
63 1whx_A Hypothetical protein ri 99.8 2.3E-20 7.8E-25 124.1 8.8 76 99-177 9-84 (111)
64 2d9p_A Polyadenylate-binding p 99.8 5.8E-20 2E-24 120.4 10.5 78 99-178 14-94 (103)
65 4a8x_A RNA-binding protein wit 99.8 4.6E-20 1.6E-24 117.4 9.7 77 99-177 3-85 (88)
66 1x5u_A Splicing factor 3B subu 99.8 1.2E-19 4.2E-24 119.3 11.9 80 99-180 14-98 (105)
67 2cpf_A RNA binding motif prote 99.8 3E-20 1E-24 120.7 8.8 79 99-179 4-90 (98)
68 2dnp_A RNA-binding protein 14; 99.8 1E-19 3.4E-24 116.5 11.2 76 99-179 8-83 (90)
69 1x5t_A Splicing factor 3B subu 99.8 3.9E-20 1.3E-24 119.7 9.3 79 99-179 4-88 (96)
70 1x4g_A Nucleolysin TIAR; struc 99.8 6.6E-20 2.2E-24 121.4 10.5 78 99-179 24-101 (109)
71 2la4_A Nuclear and cytoplasmic 99.8 3.4E-20 1.1E-24 121.2 8.8 76 99-177 26-101 (101)
72 2cq0_A Eukaryotic translation 99.8 6.7E-20 2.3E-24 120.2 10.1 79 99-179 14-97 (103)
73 2dgt_A RNA-binding protein 30; 99.8 1.6E-19 5.3E-24 116.0 11.6 76 99-179 9-84 (92)
74 2dgo_A Cytotoxic granule-assoc 99.8 1.7E-19 5.7E-24 120.6 12.1 78 99-178 14-96 (115)
75 2jvr_A Nucleolar protein 3; RN 99.8 6.2E-20 2.1E-24 121.8 9.8 79 99-178 27-106 (111)
76 2la6_A RNA-binding protein FUS 99.8 1.6E-19 5.3E-24 117.6 11.3 75 99-175 12-99 (99)
77 1nu4_A U1A RNA binding domain; 99.8 3.9E-20 1.3E-24 119.9 8.4 80 99-180 7-92 (97)
78 2dgu_A Heterogeneous nuclear r 99.8 1.2E-19 4.2E-24 118.9 10.8 76 99-179 10-85 (103)
79 2jrs_A RNA-binding protein 39; 99.8 8.2E-20 2.8E-24 120.9 10.0 78 99-178 25-107 (108)
80 2ywk_A Putative RNA-binding pr 99.8 6.4E-20 2.2E-24 118.4 9.2 76 99-176 15-94 (95)
81 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-19 6.6E-24 120.3 11.8 78 99-178 24-106 (115)
82 1x4h_A RNA-binding protein 28; 99.8 3E-19 1E-23 118.5 12.6 78 99-178 14-102 (111)
83 2dgs_A DAZ-associated protein 99.8 1.4E-19 4.7E-24 117.8 10.7 78 99-179 9-91 (99)
84 2err_A Ataxin-2-binding protei 99.8 8.3E-20 2.8E-24 121.0 9.7 78 99-178 28-108 (109)
85 1sjr_A Polypyrimidine tract-bi 99.8 1.1E-19 3.9E-24 127.5 10.9 79 101-180 47-127 (164)
86 3tyt_A Heterogeneous nuclear r 99.8 8.9E-20 3E-24 133.8 10.8 77 99-177 3-80 (205)
87 2dgv_A HnRNP M, heterogeneous 99.8 8.1E-20 2.8E-24 117.3 9.1 78 99-178 7-87 (92)
88 2hvz_A Splicing factor, argini 99.8 6E-20 2.1E-24 119.9 8.7 77 101-179 1-77 (101)
89 3pgw_S U1-70K; protein-RNA com 99.8 1.2E-20 4E-25 152.7 6.0 78 99-178 101-183 (437)
90 2jvo_A Nucleolar protein 3; nu 99.8 8.8E-20 3E-24 120.7 9.1 76 99-179 30-105 (108)
91 2cq2_A Hypothetical protein LO 99.8 6.3E-20 2.1E-24 121.7 8.2 76 99-177 24-106 (114)
92 1oo0_B CG8781-PA, drosophila Y 99.8 1.5E-19 5E-24 119.9 10.0 78 99-178 25-107 (110)
93 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-19 6.4E-24 120.3 10.5 77 99-177 7-85 (115)
94 2dnm_A SRP46 splicing factor; 99.8 1.4E-19 4.8E-24 118.6 9.8 78 99-178 12-94 (103)
95 2cpi_A CCR4-NOT transcription 99.8 1.1E-19 3.9E-24 120.7 9.4 78 99-178 14-102 (111)
96 1p27_B RNA-binding protein 8A; 99.8 1.1E-19 3.8E-24 119.7 9.3 77 99-177 22-103 (106)
97 2kvi_A Nuclear polyadenylated 99.8 9.3E-20 3.2E-24 118.0 8.6 75 99-178 9-84 (96)
98 2dgp_A Bruno-like 4, RNA bindi 99.8 2.8E-19 9.5E-24 117.7 10.9 79 99-179 12-98 (106)
99 2diu_A KIAA0430 protein; struc 99.8 1.8E-19 6.3E-24 114.2 9.5 74 99-178 7-85 (96)
100 2fy1_A RNA-binding motif prote 99.8 1.8E-19 6.2E-24 120.7 10.0 79 99-179 6-88 (116)
101 3ulh_A THO complex subunit 4; 99.8 1.8E-19 6.1E-24 118.8 9.8 76 99-176 28-107 (107)
102 2khc_A Testis-specific RNP-typ 99.8 4E-19 1.4E-23 119.2 11.5 76 98-175 38-118 (118)
103 2e5j_A Methenyltetrahydrofolat 99.8 5.4E-19 1.8E-23 114.6 11.7 77 99-178 18-95 (97)
104 3ucg_A Polyadenylate-binding p 99.8 2.2E-19 7.6E-24 114.5 9.7 76 100-178 6-86 (89)
105 2div_A TRNA selenocysteine ass 99.8 1.2E-19 3.9E-24 118.1 8.1 77 99-177 8-94 (99)
106 2do0_A HnRNP M, heterogeneous 99.8 4.2E-19 1.4E-23 118.4 11.0 77 99-177 14-94 (114)
107 1wf1_A RNA-binding protein RAL 99.8 3.1E-19 1.1E-23 118.4 10.2 75 99-178 26-101 (110)
108 2kt5_A RNA and export factor-b 99.8 2.5E-18 8.6E-23 116.3 14.6 79 99-179 34-116 (124)
109 2dnh_A Bruno-like 5, RNA bindi 99.8 9.4E-19 3.2E-23 115.0 12.1 80 99-179 14-99 (105)
110 2cqp_A RNA-binding protein 12; 99.8 1.5E-19 5E-24 117.4 8.1 78 99-178 14-96 (98)
111 3ex7_B RNA-binding protein 8A; 99.8 3E-19 1E-23 121.2 9.7 78 99-178 21-103 (126)
112 2cpe_A RNA-binding protein EWS 99.8 5.1E-19 1.7E-23 117.8 10.7 79 99-179 14-105 (113)
113 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.9E-24 119.2 7.4 78 99-178 7-89 (104)
114 2kxn_B Transformer-2 protein h 99.8 3.3E-19 1.1E-23 121.5 9.9 77 99-177 45-126 (129)
115 2dhg_A TRNA selenocysteine ass 99.8 2E-19 6.9E-24 118.0 8.4 78 99-178 8-91 (104)
116 2cqh_A IGF-II mRNA-binding pro 99.8 1.8E-19 6.2E-24 115.9 7.9 77 99-179 7-85 (93)
117 2ek1_A RNA-binding protein 12; 99.8 8E-20 2.7E-24 118.0 6.2 76 99-176 14-94 (95)
118 1x4c_A Splicing factor, argini 99.8 6.4E-19 2.2E-23 116.5 10.7 77 99-179 14-95 (108)
119 1x5p_A Negative elongation fac 99.8 1.5E-18 5E-23 112.5 12.2 76 99-179 14-89 (97)
120 1x4e_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 117.0 4.7 76 99-176 4-84 (85)
121 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-18 5.4E-23 119.5 12.7 79 99-179 41-124 (139)
122 1s79_A Lupus LA protein; RRM, 99.8 2.7E-19 9.3E-24 117.3 8.2 76 99-177 10-89 (103)
123 3d2w_A TAR DNA-binding protein 99.8 6.8E-19 2.3E-23 112.4 9.7 77 99-181 10-88 (89)
124 3ns6_A Eukaryotic translation 99.8 1.5E-19 5.3E-24 117.9 6.5 78 99-177 5-93 (100)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-18 4.5E-23 119.9 11.6 75 98-174 61-140 (140)
126 2cqd_A RNA-binding region cont 99.8 1.6E-18 5.5E-23 115.9 11.5 76 99-177 16-96 (116)
127 3p5t_L Cleavage and polyadenyl 99.8 1.3E-19 4.3E-24 116.0 5.7 78 102-180 3-86 (90)
128 2fc9_A NCL protein; structure 99.8 1.3E-18 4.4E-23 113.6 10.6 76 99-179 14-93 (101)
129 2dis_A Unnamed protein product 99.8 8E-19 2.7E-23 116.1 9.8 78 99-178 7-93 (109)
130 2cq4_A RNA binding motif prote 99.8 4.5E-19 1.6E-23 118.3 8.6 76 99-177 24-104 (114)
131 2krb_A Eukaryotic translation 99.8 1.9E-19 6.5E-24 113.0 6.3 71 100-172 1-81 (81)
132 2e44_A Insulin-like growth fac 99.8 1.9E-18 6.6E-23 111.7 11.2 77 99-177 14-92 (96)
133 1fjc_A Nucleolin RBD2, protein 99.8 5.1E-19 1.7E-23 114.4 8.4 78 99-178 15-92 (96)
134 2cpx_A Hypothetical protein FL 99.8 2.3E-18 7.7E-23 115.0 11.6 79 99-179 24-107 (115)
135 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-18 5E-23 113.9 10.5 77 99-179 14-96 (104)
136 2nlw_A Eukaryotic translation 99.8 6.1E-19 2.1E-23 116.0 8.6 76 99-176 14-99 (105)
137 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-18 4.2E-23 122.4 10.5 78 99-178 38-120 (156)
138 1x5o_A RNA binding motif, sing 99.8 4.1E-18 1.4E-22 113.5 12.0 77 99-177 24-112 (114)
139 2dng_A Eukaryotic translation 99.8 2.5E-18 8.4E-23 112.6 10.6 77 99-179 14-95 (103)
140 2jwn_A Embryonic polyadenylate 99.8 1E-18 3.5E-23 118.2 8.7 81 99-182 35-120 (124)
141 2mss_A Protein (musashi1); RNA 99.8 6.9E-19 2.4E-23 108.7 7.1 70 102-174 1-75 (75)
142 2cpy_A RNA-binding protein 12; 99.8 1.7E-18 5.8E-23 115.6 9.3 77 99-178 14-95 (114)
143 3s7r_A Heterogeneous nuclear r 99.8 2.9E-18 9.8E-23 108.9 9.9 73 99-174 10-87 (87)
144 1wg1_A KIAA1579 protein, homol 99.8 1.4E-18 4.7E-23 110.7 8.2 76 99-178 4-79 (88)
145 4f25_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 118.6 6.2 89 1-116 22-113 (115)
146 2m2b_A RNA-binding protein 10; 99.8 1.3E-18 4.5E-23 118.9 8.5 78 99-179 22-110 (131)
147 2ki2_A SS-DNA binding protein 99.8 3.2E-19 1.1E-23 114.0 4.9 75 101-178 2-81 (90)
148 3n9u_C Cleavage and polyadenyl 99.8 1.9E-18 6.3E-23 121.5 9.2 78 99-177 54-137 (156)
149 2dh8_A DAZ-associated protein 99.8 1.5E-18 5.3E-23 114.0 7.7 77 99-178 15-96 (105)
150 2rs2_A Musashi-1, RNA-binding 99.8 4.2E-18 1.4E-22 112.8 9.7 78 99-179 24-106 (109)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.9E-19 2.3E-23 114.8 5.8 75 99-177 18-98 (100)
152 2fc8_A NCL protein; structure 99.8 4.9E-18 1.7E-22 111.0 9.9 78 99-178 14-93 (102)
153 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-17 3.6E-22 109.6 11.5 76 99-178 14-94 (103)
154 3beg_B Splicing factor, argini 99.8 2.6E-18 8.9E-23 114.8 8.7 75 99-177 15-94 (115)
155 1wg5_A Heterogeneous nuclear r 99.8 9E-18 3.1E-22 110.2 10.8 76 99-177 14-94 (104)
156 3egn_A RNA-binding protein 40; 99.8 2.5E-18 8.6E-23 119.1 8.4 78 99-178 44-131 (143)
157 1fj7_A Nucleolin RBD1, protein 99.8 1E-18 3.4E-23 114.1 6.0 76 99-178 16-96 (101)
158 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-18 4.8E-23 107.8 6.0 71 101-174 1-76 (77)
159 2bz2_A Negative elongation fac 99.8 6.5E-18 2.2E-22 113.8 9.7 75 99-178 38-112 (121)
160 1wel_A RNA-binding protein 12; 99.7 2E-18 6.9E-23 116.8 6.9 76 99-177 24-104 (124)
161 1x4b_A Heterogeneous nuclear r 99.7 5.6E-18 1.9E-22 113.3 8.9 78 99-179 26-108 (116)
162 2dgw_A Probable RNA-binding pr 99.7 9.4E-18 3.2E-22 107.4 9.5 76 99-178 9-88 (91)
163 2db1_A Heterogeneous nuclear r 99.7 5.1E-18 1.8E-22 113.9 8.6 76 99-177 16-98 (118)
164 2f3j_A RNA and export factor b 99.7 1.1E-17 3.8E-22 119.9 10.5 81 98-180 86-170 (177)
165 2hgl_A HNRPF protein, heteroge 99.7 3.1E-18 1.1E-22 117.5 6.9 76 99-177 43-125 (136)
166 2e5g_A U6 snRNA-specific termi 99.7 6.5E-18 2.2E-22 108.8 8.0 75 99-177 7-82 (94)
167 4f02_A Polyadenylate-binding p 99.7 1.3E-17 4.3E-22 122.9 10.0 77 99-177 14-95 (213)
168 2adc_A Polypyrimidine tract-bi 99.7 1.8E-17 6.3E-22 123.3 10.8 78 98-177 32-110 (229)
169 1fxl_A Paraneoplastic encephal 99.7 3.6E-17 1.2E-21 115.3 11.7 79 99-179 1-84 (167)
170 1wf0_A TDP-43, TAR DNA-binding 99.7 4E-18 1.4E-22 108.5 6.0 77 99-179 4-80 (88)
171 1b7f_A Protein (SXL-lethal pro 99.7 2.5E-17 8.5E-22 116.4 10.6 78 99-178 2-84 (168)
172 2hzc_A Splicing factor U2AF 65 99.7 1.9E-17 6.5E-22 105.0 9.0 72 99-173 5-86 (87)
173 2pe8_A Splicing factor 45; RRM 99.7 3.3E-17 1.1E-21 107.6 10.4 77 99-177 7-94 (105)
174 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-17 4E-22 124.5 8.9 77 99-178 133-230 (240)
175 2lmi_A GRSF-1, G-rich sequence 99.7 6.2E-18 2.1E-22 111.6 6.2 76 99-177 10-92 (107)
176 1wez_A HnRNP H', FTP-3, hetero 99.7 6.6E-18 2.3E-22 110.5 6.3 76 99-178 14-93 (102)
177 1iqt_A AUF1, heterogeneous nuc 99.7 5E-18 1.7E-22 104.7 5.2 70 102-174 1-75 (75)
178 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-17 9.1E-22 111.4 9.1 77 1-81 45-124 (130)
179 2lcw_A RNA-binding protein FUS 99.6 5.2E-19 1.8E-23 118.4 0.0 78 99-178 6-96 (116)
180 3q2s_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 123.7 7.3 78 99-177 67-150 (229)
181 2dit_A HIV TAT specific factor 99.7 1.3E-16 4.3E-21 106.1 10.8 77 99-177 14-102 (112)
182 1qm9_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 119.3 8.5 77 99-177 2-79 (198)
183 3md3_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 113.9 9.5 76 101-178 1-80 (166)
184 2dnn_A RNA-binding protein 12; 99.7 7.9E-17 2.7E-21 106.4 9.2 74 100-177 16-93 (109)
185 2xs2_A Deleted in azoospermia- 99.7 1.7E-17 5.8E-22 108.4 4.9 75 99-177 8-86 (102)
186 3v4m_A Splicing factor U2AF 65 99.7 1.1E-16 3.9E-21 105.0 8.7 77 99-177 4-97 (105)
187 3pgw_A U1-A; protein-RNA compl 99.7 1.9E-16 6.5E-21 121.1 11.0 78 99-178 8-91 (282)
188 2dha_A FLJ20171 protein; RRM d 99.7 3.6E-17 1.2E-21 110.3 5.9 76 99-177 22-105 (123)
189 2qfj_A FBP-interacting repress 99.7 2.2E-16 7.5E-21 116.0 9.4 78 99-178 27-109 (216)
190 3sde_A Paraspeckle component 1 99.7 5E-16 1.7E-20 117.8 10.8 76 99-177 21-96 (261)
191 2e5i_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 105.0 9.3 76 1-81 42-120 (124)
192 2hgm_A HNRPF protein, heteroge 99.7 1.2E-16 4.2E-21 108.0 6.3 76 99-177 41-121 (126)
193 2hgn_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 112.3 4.0 76 99-178 45-124 (139)
194 1l3k_A Heterogeneous nuclear r 99.6 5.7E-16 1.9E-20 112.1 9.0 76 99-177 12-92 (196)
195 3nmr_A Cugbp ELAV-like family 99.6 6.5E-16 2.2E-20 109.7 9.1 78 99-178 2-89 (175)
196 2wbr_A GW182, gawky, LD47780P; 99.6 2.4E-16 8.3E-21 98.9 5.9 56 1-57 24-79 (89)
197 1sjr_A Polypyrimidine tract-bi 99.6 5E-16 1.7E-20 109.0 8.1 77 1-81 63-142 (164)
198 2dnl_A Cytoplasmic polyadenyla 99.6 5.6E-16 1.9E-20 103.2 7.5 71 99-174 7-85 (114)
199 3ue2_A Poly(U)-binding-splicin 99.6 9.1E-16 3.1E-20 102.7 8.4 76 99-176 19-108 (118)
200 3s6e_A RNA-binding protein 39; 99.6 2E-15 7E-20 100.3 9.7 77 99-177 6-93 (114)
201 2hvz_A Splicing factor, argini 99.6 2.7E-16 9.1E-21 102.5 5.1 60 1-60 17-76 (101)
202 4fxv_A ELAV-like protein 1; RN 99.6 4.3E-16 1.5E-20 101.2 6.0 58 1-58 36-98 (99)
203 3tht_A Alkylated DNA repair pr 99.6 1.4E-15 4.8E-20 118.9 9.8 74 99-175 17-97 (345)
204 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-15 4.5E-20 110.5 8.9 76 99-177 108-187 (193)
205 2g4b_A Splicing factor U2AF 65 99.6 1.9E-15 6.3E-20 107.2 9.3 76 99-177 3-88 (172)
206 3r27_A HnRNP L, heterogeneous 99.6 7.9E-16 2.7E-20 99.6 6.4 59 1-60 38-98 (100)
207 2d9o_A DNAJ (HSP40) homolog, s 99.6 4.7E-15 1.6E-19 96.3 9.9 76 100-179 10-92 (100)
208 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4E-20 102.1 6.6 75 101-177 3-96 (136)
209 2yh0_A Splicing factor U2AF 65 99.6 4.1E-15 1.4E-19 107.7 9.7 76 99-177 3-88 (198)
210 2cjk_A Nuclear polyadenylated 99.6 1.7E-15 5.7E-20 106.9 7.2 75 99-177 2-81 (167)
211 1fje_B Nucleolin RBD12, protei 99.6 1E-15 3.4E-20 109.0 6.0 76 99-177 12-91 (175)
212 2a3j_A U1 small nuclear ribonu 99.6 1.2E-15 4.2E-20 103.4 5.6 60 1-60 50-111 (127)
213 3lqv_A PRE-mRNA branch site pr 99.6 9.5E-16 3.3E-20 102.1 4.9 83 1-126 25-109 (115)
214 1jmt_A Splicing factor U2AF 35 99.6 7.5E-16 2.6E-20 101.0 3.8 69 105-175 20-104 (104)
215 3s8s_A Histone-lysine N-methyl 99.6 3.6E-15 1.2E-19 98.7 6.2 59 1-59 23-86 (110)
216 2dgx_A KIAA0430 protein; RRM d 99.6 7.1E-15 2.4E-19 94.8 6.8 59 1-59 30-90 (96)
217 2diu_A KIAA0430 protein; struc 99.6 6.6E-15 2.3E-19 93.3 6.3 55 1-60 30-85 (96)
218 1x4d_A Matrin 3; structural ge 99.6 7.7E-15 2.6E-19 95.6 6.4 57 1-58 33-91 (102)
219 1wex_A Hypothetical protein (r 99.5 1.2E-14 4E-19 95.2 7.2 60 1-61 32-93 (104)
220 1sjq_A Polypyrimidine tract-bi 99.5 3.8E-15 1.3E-19 97.3 4.6 60 1-61 33-94 (105)
221 2pe8_A Splicing factor 45; RRM 99.5 1.2E-14 4.1E-19 95.3 6.8 58 1-58 30-93 (105)
222 2cq1_A PTB-like protein L; RRM 99.5 3.8E-14 1.3E-18 92.2 8.6 60 1-61 32-93 (101)
223 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1E-14 3.5E-19 91.8 5.7 57 1-57 24-85 (85)
224 2cq0_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 93.7 7.2 60 1-60 32-96 (103)
225 2cq2_A Hypothetical protein LO 99.5 1.1E-14 3.8E-19 96.4 5.8 61 1-62 44-109 (114)
226 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.2E-14 1.1E-18 92.9 7.9 60 1-60 32-94 (103)
227 2cq3_A RNA-binding protein 9; 99.5 5.9E-14 2E-18 91.6 9.0 61 1-61 32-95 (103)
228 1whw_A Hypothetical protein ri 99.5 4.4E-14 1.5E-18 91.5 8.3 60 1-60 25-89 (99)
229 1x4f_A Matrin 3; structural ge 99.5 1.4E-14 4.9E-19 95.7 6.0 59 1-60 43-103 (112)
230 2e5h_A Zinc finger CCHC-type a 99.5 2.6E-14 9E-19 91.6 7.2 57 1-57 33-94 (94)
231 1x5p_A Negative elongation fac 99.5 5.6E-14 1.9E-18 90.7 8.4 59 1-60 30-88 (97)
232 3md1_A Nuclear and cytoplasmic 99.5 2.2E-14 7.6E-19 89.8 6.3 58 1-58 18-80 (83)
233 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.2E-14 7.5E-19 90.7 6.3 58 1-58 23-85 (87)
234 3v4m_A Splicing factor U2AF 65 99.5 1.9E-14 6.5E-19 94.4 6.1 58 1-58 32-96 (105)
235 3s6e_A RNA-binding protein 39; 99.5 1.8E-14 6.2E-19 95.7 6.1 58 1-58 34-92 (114)
236 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.5E-14 1.2E-18 92.1 7.1 57 1-59 34-90 (100)
237 3ns6_A Eukaryotic translation 99.5 1.3E-14 4.4E-19 94.4 5.0 58 1-58 29-92 (100)
238 2dnz_A Probable RNA-binding pr 99.5 7.1E-14 2.4E-18 89.8 8.3 59 1-59 22-85 (95)
239 2x1f_A MRNA 3'-END-processing 99.5 3.1E-14 1E-18 91.8 6.5 61 1-61 19-84 (96)
240 2ad9_A Polypyrimidine tract-bi 99.5 2.1E-14 7.2E-19 95.9 5.8 60 1-61 48-109 (119)
241 1jmt_A Splicing factor U2AF 35 99.5 1.5E-14 5.1E-19 94.7 5.0 55 2-56 44-103 (104)
242 2cpi_A CCR4-NOT transcription 99.5 4.7E-14 1.6E-18 93.4 7.4 58 2-59 36-101 (111)
243 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.4E-14 1.2E-18 92.5 6.4 60 1-60 29-93 (102)
244 2fy1_A RNA-binding motif prote 99.5 7.9E-14 2.7E-18 93.0 8.2 60 1-60 24-87 (116)
245 2dnq_A RNA-binding protein 4B; 99.5 7.1E-14 2.4E-18 89.0 7.6 57 1-60 25-81 (90)
246 1x4a_A Splicing factor, argini 99.5 6.3E-14 2.2E-18 92.4 7.6 59 1-59 39-99 (109)
247 2err_A Ataxin-2-binding protei 99.5 3E-14 1E-18 94.0 6.0 59 1-59 46-107 (109)
248 1x5t_A Splicing factor 3B subu 99.5 4.2E-14 1.4E-18 91.0 6.5 60 1-60 22-87 (96)
249 1nu4_A U1A RNA binding domain; 99.5 2.1E-14 7.1E-19 92.6 5.0 59 1-59 29-89 (97)
250 2lkz_A RNA-binding protein 5; 99.5 1.4E-14 4.8E-19 93.3 4.2 58 1-58 26-94 (95)
251 2dnh_A Bruno-like 5, RNA bindi 99.5 4.4E-14 1.5E-18 92.4 6.6 61 1-61 32-99 (105)
252 1whx_A Hypothetical protein ri 99.5 4.1E-14 1.4E-18 93.7 6.5 59 1-60 27-85 (111)
253 2cpf_A RNA binding motif prote 99.5 4.6E-14 1.6E-18 91.2 6.6 60 1-60 22-89 (98)
254 1why_A Hypothetical protein ri 99.5 4.6E-14 1.6E-18 91.1 6.5 57 1-58 34-92 (97)
255 2xnq_A Nuclear polyadenylated 99.5 6.7E-14 2.3E-18 90.4 7.2 55 1-58 40-94 (97)
256 2lxi_A RNA-binding protein 10; 99.5 6.9E-15 2.4E-19 94.0 2.4 58 1-58 18-82 (91)
257 2dnm_A SRP46 splicing factor; 99.5 4.5E-14 1.5E-18 92.1 6.3 60 1-60 30-94 (103)
258 1x4g_A Nucleolysin TIAR; struc 99.5 6.9E-14 2.3E-18 92.2 7.2 59 1-60 42-100 (109)
259 2cqc_A Arginine/serine-rich sp 99.5 3.8E-14 1.3E-18 91.0 5.8 57 1-57 32-93 (95)
260 2ytc_A PRE-mRNA-splicing facto 99.5 3.8E-14 1.3E-18 89.2 5.7 56 1-57 29-85 (85)
261 2cpj_A Non-POU domain-containi 99.5 4E-14 1.4E-18 91.7 5.9 59 1-60 32-90 (99)
262 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.9E-18 91.7 8.2 58 1-58 43-101 (112)
263 2d9p_A Polyadenylate-binding p 99.5 7.5E-14 2.5E-18 91.1 7.1 60 1-60 32-94 (103)
264 3p5t_L Cleavage and polyadenyl 99.5 7E-15 2.4E-19 93.7 2.0 59 1-59 18-83 (90)
265 2dgs_A DAZ-associated protein 99.5 1.3E-13 4.3E-18 89.3 8.0 58 1-59 27-89 (99)
266 2cpz_A CUG triplet repeat RNA- 99.5 5.1E-14 1.8E-18 93.7 6.3 60 1-60 42-106 (115)
267 4a8x_A RNA-binding protein wit 99.5 5.9E-14 2E-18 88.8 6.3 58 1-58 21-84 (88)
268 2cph_A RNA binding motif prote 99.5 9.3E-14 3.2E-18 91.1 7.5 60 1-60 32-98 (107)
269 2ywk_A Putative RNA-binding pr 99.5 3.5E-14 1.2E-18 91.2 5.3 57 1-57 33-93 (95)
270 2do4_A Squamous cell carcinoma 99.5 6.1E-14 2.1E-18 91.0 6.4 58 1-58 34-95 (100)
271 2nlw_A Eukaryotic translation 99.5 3.6E-14 1.2E-18 93.0 5.3 57 1-57 38-98 (105)
272 1x5s_A Cold-inducible RNA-bind 99.5 5.3E-14 1.8E-18 91.6 6.1 60 1-60 29-93 (102)
273 1x5u_A Splicing factor 3B subu 99.5 8.3E-14 2.8E-18 91.1 7.0 60 1-60 32-96 (105)
274 2jvr_A Nucleolar protein 3; RN 99.5 3.5E-14 1.2E-18 94.0 5.0 58 1-58 45-104 (111)
275 2dgt_A RNA-binding protein 30; 99.5 1.9E-13 6.3E-18 87.4 8.2 57 1-60 27-83 (92)
276 2dnr_A Synaptojanin-1; RRM dom 99.5 2.4E-13 8.1E-18 85.4 8.3 74 98-177 5-86 (91)
277 2kvi_A Nuclear polyadenylated 99.5 5.8E-14 2E-18 90.5 5.6 57 1-60 28-84 (96)
278 2jrs_A RNA-binding protein 39; 99.5 4.9E-14 1.7E-18 92.9 5.2 58 1-58 43-105 (108)
279 2dgo_A Cytotoxic granule-assoc 99.5 2.8E-13 9.5E-18 90.1 8.9 60 1-60 32-96 (115)
280 2i2y_A Fusion protein consists 99.5 6.3E-14 2.2E-18 97.6 5.9 58 1-58 90-147 (150)
281 2la4_A Nuclear and cytoplasmic 99.5 4.6E-14 1.6E-18 91.7 4.8 57 1-58 44-100 (101)
282 2jvo_A Nucleolar protein 3; nu 99.5 9.8E-14 3.4E-18 91.4 6.4 56 1-59 48-103 (108)
283 1p27_B RNA-binding protein 8A; 99.5 5.8E-14 2E-18 92.0 5.3 58 1-58 40-102 (106)
284 2bz2_A Negative elongation fac 99.5 9.1E-14 3.1E-18 93.4 6.2 59 1-60 54-112 (121)
285 1x4c_A Splicing factor, argini 99.5 3E-13 1E-17 89.0 8.6 57 1-59 32-93 (108)
286 2khc_A Testis-specific RNP-typ 99.5 6.4E-14 2.2E-18 93.6 5.3 57 1-57 57-118 (118)
287 2krb_A Eukaryotic translation 99.5 3E-14 1E-18 88.9 3.4 53 1-53 24-80 (81)
288 2dgv_A HnRNP M, heterogeneous 99.5 5.3E-14 1.8E-18 89.8 4.6 59 1-59 25-86 (92)
289 3ue2_A Poly(U)-binding-splicin 99.5 8.7E-14 3E-18 93.0 5.6 58 1-58 42-108 (118)
290 1oo0_B CG8781-PA, drosophila Y 99.5 1E-13 3.6E-18 91.4 6.0 58 1-58 43-105 (110)
291 3ulh_A THO complex subunit 4; 99.4 1.1E-13 3.7E-18 90.9 5.9 57 1-57 46-106 (107)
292 2la6_A RNA-binding protein FUS 99.4 8.3E-14 2.8E-18 90.2 5.2 57 1-57 30-99 (99)
293 2kxn_B Transformer-2 protein h 99.4 1.2E-13 4E-18 93.9 6.1 58 1-58 63-125 (129)
294 1wf1_A RNA-binding protein RAL 99.4 1.3E-13 4.5E-18 91.0 6.2 56 1-59 45-100 (110)
295 1p1t_A Cleavage stimulation fa 99.4 8.9E-14 3.1E-18 90.8 5.2 59 1-59 25-88 (104)
296 2kt5_A RNA and export factor-b 99.4 3.1E-13 1.1E-17 91.1 8.0 61 1-61 52-116 (124)
297 3ucg_A Polyadenylate-binding p 99.4 1.8E-13 6.2E-18 86.7 6.2 57 1-58 23-84 (89)
298 1u6f_A Tcubp1, RNA-binding pro 99.4 2E-13 6.8E-18 93.8 6.8 60 1-60 59-123 (139)
299 2dgu_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 87.7 7.8 58 1-61 28-85 (103)
300 1x4h_A RNA-binding protein 28; 99.4 3.7E-13 1.3E-17 88.8 7.5 59 1-59 32-101 (111)
301 2dnp_A RNA-binding protein 14; 99.4 3.2E-13 1.1E-17 85.9 6.9 56 1-59 26-81 (90)
302 1owx_A Lupus LA protein, SS-B, 99.4 1.3E-12 4.4E-17 87.1 10.0 75 98-175 16-94 (121)
303 1s79_A Lupus LA protein; RRM, 99.4 1.7E-13 5.8E-18 89.5 5.3 57 1-58 28-88 (103)
304 2jwn_A Embryonic polyadenylate 99.4 4.2E-13 1.4E-17 90.4 7.4 58 1-59 53-115 (124)
305 2cpd_A Apobec-1 stimulating pr 99.4 6.8E-13 2.3E-17 85.8 8.0 56 1-59 32-89 (99)
306 2do0_A HnRNP M, heterogeneous 99.4 2.8E-13 9.7E-18 89.8 6.3 58 1-58 32-93 (114)
307 2e5j_A Methenyltetrahydrofolat 99.4 1.7E-13 6E-18 88.4 5.1 57 1-58 36-93 (97)
308 2dgp_A Bruno-like 4, RNA bindi 99.4 2.9E-13 9.9E-18 88.7 6.1 59 1-59 30-96 (106)
309 3ex7_B RNA-binding protein 8A; 99.4 2.1E-13 7.1E-18 92.1 5.5 60 1-60 39-103 (126)
310 2cqd_A RNA-binding region cont 99.4 7.1E-13 2.4E-17 88.2 7.8 58 1-59 34-96 (116)
311 2mss_A Protein (musashi1); RNA 99.4 9.7E-14 3.3E-18 85.2 3.3 55 1-56 16-75 (75)
312 2cq4_A RNA binding motif prote 99.4 2.9E-13 1E-17 89.9 5.7 58 1-59 42-104 (114)
313 2cpe_A RNA-binding protein EWS 99.4 3.8E-13 1.3E-17 89.1 6.2 59 1-59 32-103 (113)
314 2div_A TRNA selenocysteine ass 99.4 1.8E-13 6.1E-18 88.6 4.4 59 1-59 26-94 (99)
315 2cqp_A RNA-binding protein 12; 99.4 1.1E-13 3.8E-18 89.4 3.3 58 1-58 32-94 (98)
316 2ki2_A SS-DNA binding protein 99.4 1E-13 3.5E-18 88.2 2.8 59 1-60 18-81 (90)
317 2kn4_A Immunoglobulin G-bindin 99.4 5E-13 1.7E-17 93.7 6.5 59 1-59 87-150 (158)
318 3n9u_C Cleavage and polyadenyl 99.4 3.3E-13 1.1E-17 94.6 5.5 59 1-59 72-137 (156)
319 2j76_E EIF-4B, EIF4B, eukaryot 99.4 2.9E-13 9.8E-18 87.9 4.6 56 1-58 36-97 (100)
320 2dhg_A TRNA selenocysteine ass 99.4 3.6E-13 1.2E-17 87.9 5.0 59 1-59 26-90 (104)
321 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4.5E-13 1.5E-17 91.9 5.7 56 1-56 80-140 (140)
322 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5.1E-18 88.2 2.9 57 1-57 32-93 (95)
323 1wi8_A EIF-4B, eukaryotic tran 99.4 6E-13 2.1E-17 86.9 5.8 57 1-59 32-94 (104)
324 1x4e_A RNA binding motif, sing 99.4 1.1E-13 3.6E-18 87.1 2.0 57 1-57 22-83 (85)
325 2cqh_A IGF-II mRNA-binding pro 99.4 4.8E-13 1.6E-17 85.6 5.1 57 1-59 25-83 (93)
326 2cpx_A Hypothetical protein FL 99.4 6.5E-13 2.2E-17 88.2 5.9 60 1-60 42-106 (115)
327 1h2v_Z 20 kDa nuclear CAP bind 99.4 7E-13 2.4E-17 92.8 6.2 59 1-59 56-119 (156)
328 2lea_A Serine/arginine-rich sp 99.4 4.5E-13 1.6E-17 91.7 5.0 59 1-59 64-127 (135)
329 1ufw_A Synaptojanin 2; RNP dom 99.4 1.7E-12 5.9E-17 81.8 7.1 73 98-176 13-94 (95)
330 2dng_A Eukaryotic translation 99.4 1.2E-12 4.2E-17 85.2 6.6 57 1-59 32-93 (103)
331 2dh8_A DAZ-associated protein 99.4 5E-13 1.7E-17 87.4 4.7 59 1-60 33-96 (105)
332 1wg1_A KIAA1579 protein, homol 99.4 7.9E-13 2.7E-17 83.7 5.4 58 1-60 22-79 (88)
333 1uaw_A Mouse-musashi-1; RNP-ty 99.4 4.5E-13 1.5E-17 82.6 4.1 55 1-56 17-76 (77)
334 1x4b_A Heterogeneous nuclear r 99.4 1.6E-12 5.4E-17 86.5 7.1 58 1-59 44-106 (116)
335 3u1l_A PRE-mRNA-splicing facto 99.4 7.4E-13 2.5E-17 98.6 5.9 59 1-60 160-230 (240)
336 1x5o_A RNA binding motif, sing 99.4 1.1E-12 3.6E-17 87.1 5.8 57 1-57 42-110 (114)
337 1rk8_A CG8781-PA, CG8781-PA pr 99.4 7.9E-13 2.7E-17 93.5 5.5 59 1-59 89-152 (165)
338 2rs2_A Musashi-1, RNA-binding 99.4 1.8E-12 6.3E-17 85.4 6.8 57 1-58 42-103 (109)
339 3s7r_A Heterogeneous nuclear r 99.3 1.1E-12 3.7E-17 82.8 5.4 55 1-56 28-87 (87)
340 2dis_A Unnamed protein product 99.3 8.4E-13 2.9E-17 86.8 4.7 60 1-60 25-93 (109)
341 2e44_A Insulin-like growth fac 99.3 1.5E-12 5.1E-17 83.7 5.8 59 1-59 32-92 (96)
342 2dgw_A Probable RNA-binding pr 99.3 1.9E-12 6.4E-17 82.4 5.6 56 1-58 27-86 (91)
343 3beg_B Splicing factor, argini 99.3 1.9E-12 6.5E-17 86.1 5.8 55 1-57 33-92 (115)
344 1fjc_A Nucleolin RBD2, protein 99.3 6.8E-13 2.3E-17 85.3 3.3 58 1-58 33-90 (96)
345 2fc9_A NCL protein; structure 99.3 4E-12 1.4E-16 82.4 6.7 56 1-59 32-91 (101)
346 2m2b_A RNA-binding protein 10; 99.3 7.1E-13 2.4E-17 90.2 3.1 59 1-60 40-109 (131)
347 2e5g_A U6 snRNA-specific termi 99.3 3.9E-12 1.3E-16 81.5 6.4 56 1-58 25-81 (94)
348 2f3j_A RNA and export factor b 99.3 3.2E-12 1.1E-16 91.4 6.3 61 1-61 105-169 (177)
349 3egn_A RNA-binding protein 40; 99.3 2.5E-12 8.5E-17 88.7 5.1 59 1-59 62-130 (143)
350 3q2s_C Cleavage and polyadenyl 99.3 1.4E-12 4.9E-17 96.9 4.0 59 1-59 85-150 (229)
351 2dnr_A Synaptojanin-1; RRM dom 99.3 5.2E-12 1.8E-16 79.3 5.8 53 1-57 32-84 (91)
352 1wg5_A Heterogeneous nuclear r 99.3 3.6E-12 1.2E-16 83.2 5.2 59 1-60 32-95 (104)
353 2cpy_A RNA-binding protein 12; 99.3 2.3E-12 7.9E-17 85.6 4.3 59 1-60 32-95 (114)
354 1iqt_A AUF1, heterogeneous nuc 99.3 7.5E-13 2.6E-17 81.2 1.8 55 1-56 16-75 (75)
355 2cqg_A TDP-43, TAR DNA-binding 99.3 8.5E-12 2.9E-16 81.2 6.9 57 1-59 32-93 (103)
356 3d2w_A TAR DNA-binding protein 99.3 6.9E-12 2.4E-16 79.6 6.2 54 1-58 28-83 (89)
357 2db1_A Heterogeneous nuclear r 99.3 1.9E-12 6.5E-17 86.5 3.6 59 1-60 34-99 (118)
358 2lcw_A RNA-binding protein FUS 98.9 3.5E-13 1.2E-17 89.8 0.0 59 1-59 24-95 (116)
359 2l9w_A U4/U6 snRNA-associated- 99.3 8.6E-11 2.9E-15 75.6 10.4 70 100-172 21-95 (117)
360 2hgl_A HNRPF protein, heteroge 99.3 2.3E-12 7.9E-17 88.2 3.2 58 1-59 61-125 (136)
361 1fj7_A Nucleolin RBD1, protein 99.2 8.7E-13 3E-17 85.6 0.7 56 1-58 34-94 (101)
362 1wel_A RNA-binding protein 12; 99.2 1.2E-12 4.1E-17 88.2 1.0 58 1-59 42-104 (124)
363 2dnn_A RNA-binding protein 12; 99.2 1.9E-11 6.6E-16 80.4 6.6 56 1-58 33-92 (109)
364 3pgw_S U1-70K; protein-RNA com 99.2 1.4E-11 4.9E-16 99.6 6.9 61 1-61 119-184 (437)
365 2hzc_A Splicing factor U2AF 65 99.2 1.2E-11 4E-16 77.9 4.9 52 1-54 23-85 (87)
366 1wez_A HnRNP H', FTP-3, hetero 99.2 7.7E-12 2.6E-16 81.4 4.2 56 1-58 32-91 (102)
367 2fc8_A NCL protein; structure 99.2 1.1E-11 3.7E-16 80.5 4.7 56 1-59 32-92 (102)
368 2lmi_A GRSF-1, G-rich sequence 99.2 3.6E-12 1.2E-16 83.7 2.4 58 1-59 28-92 (107)
369 2j8a_A Histone-lysine N-methyl 99.2 1.5E-11 5.3E-16 82.2 3.9 59 1-59 23-96 (136)
370 1wf0_A TDP-43, TAR DNA-binding 99.2 1.5E-11 5.1E-16 77.7 3.6 56 1-58 22-77 (88)
371 2xs2_A Deleted in azoospermia- 99.2 1.1E-11 3.6E-16 80.6 2.7 55 1-57 26-84 (102)
372 2hgn_A Heterogeneous nuclear r 99.1 8.9E-12 3E-16 85.5 1.8 57 1-59 63-123 (139)
373 2voo_A Lupus LA protein; RNA-b 99.1 6.9E-11 2.4E-15 85.5 5.6 57 1-58 126-186 (193)
374 3dxb_A Thioredoxin N-terminall 99.1 1.8E-10 6.1E-15 85.0 7.4 76 99-176 123-212 (222)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 4.7E-11 1.6E-15 75.3 3.6 52 1-56 41-92 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 9E-11 3.1E-15 86.6 5.4 57 1-57 146-211 (222)
377 2dnl_A Cytoplasmic polyadenyla 99.1 1.7E-10 5.9E-15 76.4 6.2 53 1-56 25-85 (114)
378 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4E-15 91.1 6.2 56 1-57 37-97 (345)
379 2dha_A FLJ20171 protein; RRM d 99.1 2.8E-11 9.5E-16 81.3 1.8 58 1-59 40-105 (123)
380 2hgm_A HNRPF protein, heteroge 99.0 1.3E-10 4.4E-15 78.3 3.4 56 1-58 59-120 (126)
381 1wey_A Calcipressin 1; structu 98.5 1.6E-07 5.5E-12 60.2 5.5 74 101-177 6-84 (104)
382 1owx_A Lupus LA protein, SS-B, 98.5 2.5E-07 8.5E-12 61.5 6.0 56 1-57 36-94 (121)
383 2dhx_A Poly (ADP-ribose) polym 98.3 1E-05 3.5E-10 51.6 9.5 69 99-172 7-79 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.1 3.9E-06 1.3E-10 54.0 4.7 52 3-55 40-96 (117)
385 1uw4_A UPF3X; nonsense mediate 98.1 4.4E-05 1.5E-09 47.9 8.8 75 102-177 3-88 (91)
386 1whv_A Poly(A)-specific ribonu 98.0 3.8E-05 1.3E-09 48.4 7.4 56 99-159 15-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.9 8.7E-05 3E-09 48.7 8.1 69 100-172 24-92 (119)
388 3ctr_A Poly(A)-specific ribonu 97.8 2.4E-05 8.3E-10 49.4 3.9 55 100-159 6-60 (101)
389 1wey_A Calcipressin 1; structu 97.6 0.00014 4.7E-09 46.5 5.6 55 2-57 28-82 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.5 0.00021 7.3E-09 46.9 6.0 54 2-57 41-95 (119)
391 2l08_A Regulator of nonsense t 97.4 0.00042 1.4E-08 43.8 6.0 76 100-176 9-95 (97)
392 3pq1_A Poly(A) RNA polymerase; 97.1 0.00034 1.2E-08 56.6 3.8 57 99-157 52-108 (464)
393 3p3d_A Nucleoporin 53; structu 97.0 0.0013 4.3E-08 43.8 5.0 71 100-174 7-96 (132)
394 3p3d_A Nucleoporin 53; structu 97.0 0.00033 1.1E-08 46.6 2.1 57 2-59 24-99 (132)
395 3ctr_A Poly(A)-specific ribonu 96.6 0.00089 3.1E-08 42.3 2.1 39 1-42 22-60 (101)
396 2dhx_A Poly (ADP-ribose) polym 96.6 0.0092 3.2E-07 38.0 6.6 43 9-55 38-80 (104)
397 1whv_A Poly(A)-specific ribonu 96.4 0.0011 3.8E-08 41.7 1.6 39 1-42 32-70 (100)
398 3pq1_A Poly(A) RNA polymerase; 94.6 0.0098 3.4E-07 48.1 1.3 40 1-40 69-108 (464)
399 3d45_A Poly(A)-specific ribonu 94.2 0.14 4.8E-06 42.0 7.2 56 100-160 440-495 (507)
400 1uw4_A UPF3X; nonsense mediate 77.7 5.1 0.00018 24.6 4.8 56 4-59 21-88 (91)
401 2g0c_A ATP-dependent RNA helic 77.2 3.9 0.00013 23.8 4.1 44 10-57 32-75 (76)
402 2l08_A Regulator of nonsense t 67.2 13 0.00043 23.2 4.8 37 21-57 53-94 (97)
403 2eqj_A Metal-response element- 65.7 5.5 0.00019 22.9 2.7 20 9-31 32-51 (66)
404 4e8u_A Putative uncharacterize 65.6 10 0.00035 26.2 4.6 53 102-156 14-81 (172)
405 2f06_A Conserved hypothetical 62.6 29 0.001 22.6 6.8 49 114-163 86-135 (144)
406 3lpe_A Putative transcription 62.1 14 0.00047 22.6 4.3 34 11-44 40-73 (92)
407 2e5p_A Protein PHF1, PHD finge 60.8 4.9 0.00017 23.0 1.8 20 9-31 28-47 (68)
408 4eyt_A Telomerase associated p 58.6 29 0.00098 21.2 8.6 59 99-161 11-69 (129)
409 2m0o_A PHD finger protein 1; t 58.0 5.7 0.0002 23.4 1.8 21 8-31 44-64 (79)
410 4eyt_A Telomerase associated p 54.1 13 0.00044 22.8 3.1 33 21-55 46-78 (129)
411 3ts2_A Protein LIN-28 homolog 53.1 2.9 0.0001 28.2 0.1 28 115-146 2-29 (148)
412 3h7h_B Transcription elongatio 51.5 18 0.00063 22.8 3.6 35 10-44 40-74 (106)
413 3j21_T 50S ribosomal protein L 51.2 38 0.0013 20.4 5.4 54 103-156 25-81 (86)
414 4hcz_A PHD finger protein 1; p 51.0 9.2 0.00031 21.3 1.8 20 9-31 22-41 (58)
415 2e5q_A PHD finger protein 19; 47.8 3.8 0.00013 23.1 -0.0 12 20-31 34-45 (63)
416 3lpe_A Putative transcription 47.1 46 0.0016 20.1 6.2 38 124-161 36-73 (92)
417 3p8b_B Transcription antitermi 43.8 30 0.001 23.1 4.0 34 11-44 33-66 (152)
418 3fry_A Probable copper-exporti 36.5 55 0.0019 18.0 6.0 55 101-158 7-61 (73)
419 3uzu_A Ribosomal RNA small sub 33.6 22 0.00076 26.4 2.2 32 101-133 115-146 (279)
420 3fut_A Dimethyladenosine trans 33.4 50 0.0017 24.4 4.1 31 101-133 111-141 (271)
421 3ghf_A Septum site-determining 32.4 87 0.003 20.0 4.7 30 102-131 51-80 (120)
422 2xk0_A Polycomb protein PCL; t 31.7 31 0.0011 19.9 2.1 12 20-31 40-51 (69)
423 2lsl_A Telomerase associated p 36.8 11 0.00036 23.4 0.0 23 20-42 76-98 (137)
424 3ulj_A LIN28B, DNA-binding pro 30.1 39 0.0013 20.5 2.5 15 130-144 12-26 (90)
425 1vq8_S 50S ribosomal protein L 29.0 96 0.0033 18.6 4.5 52 103-154 24-78 (85)
426 2exu_A Transcription initiatio 28.9 53 0.0018 23.3 3.4 34 11-44 139-172 (200)
427 4bby_A Alkyldihydroxyacetoneph 28.0 66 0.0023 27.1 4.4 36 7-42 370-409 (658)
428 3tqs_A Ribosomal RNA small sub 25.7 28 0.00096 25.5 1.6 31 102-133 98-128 (255)
429 1qyr_A KSGA, high level kasuga 24.7 86 0.0029 22.7 4.1 25 101-125 91-115 (252)
430 3bam_A R. bamhi, protein (rest 24.5 88 0.003 21.8 3.7 39 127-165 92-134 (213)
431 3n9y_A Cholesterol SIDE-chain 24.5 69 0.0024 25.1 3.8 34 3-40 40-73 (487)
432 1wvf_A 4-cresol dehydrogenase 23.1 74 0.0025 25.8 3.7 37 3-39 220-262 (520)
433 2k5n_A Putative cold-shock pro 22.9 83 0.0028 18.2 3.0 17 131-147 7-23 (74)
434 3ftd_A Dimethyladenosine trans 22.9 66 0.0023 23.2 3.1 25 101-125 96-120 (249)
435 1h95_A CSD, Y-box binding prot 22.8 65 0.0022 18.8 2.5 17 131-147 13-29 (79)
436 3a0j_A Cold shock protein; OB- 22.7 67 0.0023 18.4 2.5 17 131-147 6-22 (73)
437 2kcm_A Cold shock domain famil 22.1 89 0.003 18.1 3.0 17 131-147 5-21 (74)
438 1ik9_C DNA ligase IV; DNA END 21.6 62 0.0021 16.0 1.9 15 110-124 20-34 (37)
439 1gcc_A Ethylene responsive ele 21.5 71 0.0024 17.8 2.4 18 139-156 27-44 (63)
440 4a4j_A Pacszia, cation-transpo 21.5 1E+02 0.0035 16.3 5.0 54 102-157 5-61 (69)
441 1g6p_A Cold shock protein TMCS 21.3 76 0.0026 17.8 2.5 17 131-147 5-21 (66)
442 3ld6_A Lanosterol 14-alpha dem 20.6 90 0.0031 24.3 3.7 34 2-39 38-71 (461)
443 1i4w_A Mitochondrial replicati 20.3 1E+02 0.0035 23.8 3.8 23 101-123 143-165 (353)
444 1gh9_A 8.3 kDa protein (gene M 20.3 45 0.0015 19.3 1.4 28 138-165 34-61 (71)
445 3aqq_A Calcium-regulated heat 20.0 89 0.003 20.9 3.0 18 130-147 66-83 (147)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2e-37 Score=228.00 Aligned_cols=171 Identities=28% Similarity=0.454 Sum_probs=137.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCC---CCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG---QPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~---~~~~~~~~~~ 77 (184)
|+++|++||+|.+|++++.++|+|||+|.++++|+.|++.|||..+.|++|+|.+++.... .|+.. .......+++
T Consensus 22 L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~-~p~~~~~~~~~~~~~~~~ 100 (205)
T 3tyt_A 22 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI-MPGQSYGLEDGSCSYKDF 100 (205)
T ss_dssp HHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC-CCCSCCBCTTSCBSEEEC
T ss_pred HHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc-CCCcccccccCCcccccc
Confidence 6899999999999999988899999999999999999999999999999999999986654 22211 1112223555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCce--eEEEEccC---CCceEEEEeCCHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTV--KGFKFFPK---DRKMALLQLDSIEEAI 152 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v--~~v~v~~~---~~~~afV~f~~~~~A~ 152 (184)
..++.+++..+.....++..+|+++|||+|||+++|+++|+++|++|| .| .++++++. .+++|||+|++.++|.
T Consensus 101 ~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G-~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~ 179 (205)
T 3tyt_A 101 SESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG-VKRPTSVKVFSGKSERSSSGLLEWDSKSDAL 179 (205)
T ss_dssp TTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT-CCCCSEEEECSCCSSSSEEEEEECSSHHHHH
T ss_pred CCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEEEcCCCCCceEEEEEeCCHHHHH
Confidence 555555555433333345567899999999999999999999999999 88 89998863 2589999999999999
Q ss_pred HHHHHhcCeecCCC---CeEEEEe
Q psy17274 153 TALIQMHNHQLSEQ---SHLRVSF 173 (184)
Q Consensus 153 ~Ai~~lng~~i~g~---~~l~v~~ 173 (184)
+|+..|||+.+.|. +++.|.|
T Consensus 180 ~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 180 ETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp HHHHHHTTCEECCSSSSSCEECEE
T ss_pred HHHHHhCCCCccCCCCCcceEEEe
Confidence 99999999999984 2455544
No 2
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.5e-37 Score=226.05 Aligned_cols=177 Identities=67% Similarity=1.060 Sum_probs=155.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|.++|++||.|.+|+++...+|+|||+|.+.++|..|++.|||..+.|++|.|.+++......++......+...++...
T Consensus 21 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198)
T 1qm9_A 21 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 100 (198)
T ss_dssp HHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCC
T ss_pred HHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCC
Confidence 57899999999999998877899999999999999999999999999999999999877665555554445556667666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
+..++..+.........+|+++|+|+|||..+++++|+++|++||..|..++++++++|+|||+|.+.++|.+|+..|||
T Consensus 101 ~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 101 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp CTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred chhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC
Confidence 66677666666666677789999999999999999999999999956889999887899999999999999999999999
Q ss_pred eecC-CCCeEEEEecCccc
Q psy17274 161 HQLS-EQSHLRVSFSKSNI 178 (184)
Q Consensus 161 ~~i~-g~~~l~v~~~~~~~ 178 (184)
..++ | ++|+|+|+++++
T Consensus 181 ~~~~~g-~~l~v~~a~~~i 198 (198)
T 1qm9_A 181 HDLGEN-HHLRVSFSKSTI 198 (198)
T ss_dssp SCCSSC-CSCCEEEECCCC
T ss_pred CccCCC-CeEEEEeecccC
Confidence 9999 8 899999999764
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=6.7e-37 Score=228.90 Aligned_cols=177 Identities=67% Similarity=1.060 Sum_probs=154.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|.++|++||.|.+|+++...+|||||+|.+.++|++|++.|||..+.|++|.|.+++......++..........++...
T Consensus 52 L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T 2adc_A 52 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 131 (229)
T ss_dssp HHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTC
T ss_pred HHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccC
Confidence 57899999999999998877899999999999999999999999999999999999877665555444444555666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
+..++..+.........+|+++|||+|||+.+++++|+++|++||..|..++++++++++|||+|.+.++|.+|+..|||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g 211 (229)
T 2adc_A 132 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 211 (229)
T ss_dssp SSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred cccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCC
Confidence 66666666655555667789999999999999999999999999966899999877899999999999999999999999
Q ss_pred eecC-CCCeEEEEecCccc
Q psy17274 161 HQLS-EQSHLRVSFSKSNI 178 (184)
Q Consensus 161 ~~i~-g~~~l~v~~~~~~~ 178 (184)
..++ | +.|+|+|+++++
T Consensus 212 ~~~~~g-~~l~v~~a~~~i 229 (229)
T 2adc_A 212 HDLGEN-HHLRVSFSKSTI 229 (229)
T ss_dssp CBSSSS-CBCEEEECSSCC
T ss_pred CccCCC-CeEEEEEecCCC
Confidence 9999 8 899999999864
No 4
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.5e-32 Score=210.87 Aligned_cols=174 Identities=21% Similarity=0.337 Sum_probs=129.9
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCC-CCCC--------
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPK-EGQP-------- 69 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~-~~~~-------- 69 (184)
|+++|++||.|.+|++++ .++|||||+|.+.++|.+|++.|||..+.|++|+|.+++........ .+..
T Consensus 30 L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 109 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKRE 109 (282)
T ss_pred HHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhh
Confidence 568999999999999887 46899999999999999999999999999999999998754421000 0000
Q ss_pred -------C----------CCcccccCCCCCC---------CC-------------C------CCCC--------------
Q psy17274 70 -------D----------AGLTKDYTASPLH---------RF-------------K------KPGS-------------- 90 (184)
Q Consensus 70 -------~----------~~~~~~~~~~~~~---------~~-------------~------~~~~-------------- 90 (184)
. ............. .. . .++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 189 (282)
T 3pgw_A 110 KRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 189 (282)
T ss_pred hhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccc
Confidence 0 0000000000000 00 0 0000
Q ss_pred --------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCee
Q psy17274 91 --------KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162 (184)
Q Consensus 91 --------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~ 162 (184)
.......+++++|||+|||..+|+++|+++|++|| .|.+|++.+..+|+|||+|.+.++|.+|+..|||..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 268 (282)
T 3pgw_A 190 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP-GFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK 268 (282)
T ss_pred cCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC-CeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcE
Confidence 00012234678999999999999999999999999 999999997667999999999999999999999999
Q ss_pred cC-CCCeEEEEecCc
Q psy17274 163 LS-EQSHLRVSFSKS 176 (184)
Q Consensus 163 i~-g~~~l~v~~~~~ 176 (184)
+. | +.|+|+|++.
T Consensus 269 ~~~g-~~l~v~~akk 282 (282)
T 3pgw_A 269 ITQN-NAMKISFAKK 282 (282)
T ss_pred eCCC-CEEEEEEecC
Confidence 99 9 8999999973
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-33 Score=196.14 Aligned_cols=141 Identities=16% Similarity=0.273 Sum_probs=124.2
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD 76 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~ 76 (184)
|.++|++||+|.+|+++. .++|+|||+|.+.++|..|++.|||..+.|++|.|.++......
T Consensus 17 l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~-------------- 82 (166)
T 3md3_A 17 LKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS-------------- 82 (166)
T ss_dssp HHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC--------------
T ss_pred HHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC--------------
Confidence 568999999999999986 25689999999999999999999999999999999988632210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHH
Q psy17274 77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEA 151 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A 151 (184)
...++.+|+|+|||+.+|+++|+++|++|| .|..+.+... .+|+|||+|.+.++|
T Consensus 83 -------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 83 -------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp -------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred -------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 011567899999999999999999999999 9999998753 257999999999999
Q ss_pred HHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 152 ITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 152 ~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
.+|+..|||..++| ++|+|+|++.
T Consensus 143 ~~A~~~l~g~~~~g-~~i~v~~a~~ 166 (166)
T 3md3_A 143 QNAMDSMQGQDLNG-RPLRINWAAK 166 (166)
T ss_dssp HHHHHHHTTCEETT-EECEEEESCC
T ss_pred HHHHHHhCCCccCC-cEEEEEecCC
Confidence 99999999999999 8999999873
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.9e-33 Score=204.66 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=124.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||+|.+|++++ .++|||||+|.+.++|.+|++.+||..+.|+.|++.++.......
T Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~------------ 99 (213)
T 4f02_A 32 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR------------ 99 (213)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH------------
T ss_pred HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc------------
Confidence 578999999999999987 257999999999999999999999999999999998876322110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAI 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~ 152 (184)
.....+|||+|||+.+|+++|+++|++|| .|..++|..+ ++|+|||+|.+.++|.
T Consensus 100 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~d~~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 100 ---------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp ---------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTEEEEEEEEEESSHHHHH
T ss_pred ---------------------ccccccceECCcccccHHHHHHHHHhhcC-CeEEEEeeccCCCCceEEEEEeCCHHHHH
Confidence 00355799999999999999999999999 9999998753 3689999999999999
Q ss_pred HHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 153 TALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 153 ~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+|++.|||..|+| ++|+|.|++++
T Consensus 158 ~Ai~~lng~~~~g-~~i~V~~a~~~ 181 (213)
T 4f02_A 158 RAIEKMNGMLLND-RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHTTCEETT-EECEEEECCCH
T ss_pred HHHHHhCCCEECC-EEEEEEEcCCC
Confidence 9999999999999 89999999865
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1e-31 Score=190.57 Aligned_cols=137 Identities=20% Similarity=0.359 Sum_probs=120.8
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|+++.. ++|+|||+|.++++|..|++.|+|..+.|++|.|.++......
T Consensus 19 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~------------- 85 (167)
T 1fxl_A 19 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS------------- 85 (167)
T ss_dssp HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG-------------
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc-------------
Confidence 5789999999999999873 3489999999999999999999999999999999988622110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~ 150 (184)
.+..+|+|+|||+.+++++|+++|++|| .|..+++.... +|+|||+|.+.++
T Consensus 86 ----------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 86 ----------------------IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp ----------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ----------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC-CEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 1456899999999999999999999999 99999987642 6899999999999
Q ss_pred HHHHHHHhcCeecCCCCe--EEEEec
Q psy17274 151 AITALIQMHNHQLSEQSH--LRVSFS 174 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~--l~v~~~ 174 (184)
|.+|+..|||..+.| +. |+|+|+
T Consensus 143 A~~A~~~l~g~~~~g-~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSG-ATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTT-CSSCCEEEEC
T ss_pred HHHHHHHhcCCccCC-CccceEEEeC
Confidence 999999999999999 54 899886
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=1.6e-31 Score=190.02 Aligned_cols=138 Identities=18% Similarity=0.324 Sum_probs=121.4
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||+|.+|+++.. ++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.....
T Consensus 20 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-------------- 85 (168)
T 1b7f_A 20 LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-------------- 85 (168)
T ss_dssp HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS--------------
T ss_pred HHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc--------------
Confidence 5789999999999998873 469999999999999999999999999999999998862211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~ 150 (184)
..++++|+|+|||..+++++|+++|++|| .|..+.+.... +|+|||+|.+.++
T Consensus 86 ---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 86 ---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp ---------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ---------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC-cEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 01567899999999999999999999999 99999987632 4899999999999
Q ss_pred HHHHHHHhcCeecCCC-CeEEEEec
Q psy17274 151 AITALIQMHNHQLSEQ-SHLRVSFS 174 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~-~~l~v~~~ 174 (184)
|.+|+..|||..+.|. ++|+|+|+
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999652 59999986
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.9e-31 Score=195.25 Aligned_cols=153 Identities=14% Similarity=0.244 Sum_probs=126.3
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|.+|++.|||..+.|++|.|.++.......+. ..
T Consensus 45 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~--------~~ 116 (216)
T 2qfj_A 45 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI--------ID 116 (216)
T ss_dssp HHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHH--------HH
T ss_pred HHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchh--------hh
Confidence 578999999999999976 26899999999999999999999999999999999876532211000 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~ 150 (184)
.. .....+.++|||+|||..+|+++|+++|++|| .|..+++.... +++|||+|.+.++
T Consensus 117 ~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 117 QL----------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFG-KIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp HH----------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred hh----------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccC-CeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 00 00011567899999999999999999999999 99999998632 6899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSNIQ 179 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~~ 179 (184)
|.+|+..|||..++| +.|+|.|++.+..
T Consensus 180 A~~A~~~l~g~~~~g-~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGG-QYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHTTCBCSS-SBCEEEECSSCSS
T ss_pred HHHHHHHccCCEeCC-cEEEEEEecCCCC
Confidence 999999999999999 8999999998743
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.8e-30 Score=187.54 Aligned_cols=160 Identities=19% Similarity=0.279 Sum_probs=126.0
Q ss_pred ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC
Q psy17274 1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP 69 (184)
Q Consensus 1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~ 69 (184)
|.++|++| | .|.++++. .++|||||+|.+.++|++|+ .|||..+.|++|.|.+++.........
T Consensus 21 l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~--- 95 (198)
T 2yh0_A 21 MMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMS--- 95 (198)
T ss_dssp HHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSS---
T ss_pred HHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCc---
Confidence 56899999 5 77787764 46899999999999999999 899999999999999886442211000
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEE
Q psy17274 70 DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQ 144 (184)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~ 144 (184)
.... ...|+. .......+.++|||+|||..+++++|+++|++|| .|..+++..+. +|+|||+
T Consensus 96 ~~~~-----------~~~~~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 96 ENPS-----------VYVPGV-VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp SCSS-----------CCCTTS-SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS-CEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCc-----------CCCCCC-ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CccEEEEeecCCCCCcceEEEEE
Confidence 0000 000000 0011123678999999999999999999999999 99999987642 6899999
Q ss_pred eCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQ 179 (184)
Q Consensus 145 f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~ 179 (184)
|.+.++|.+|+..|||..++| +.|+|+|++++..
T Consensus 163 f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 163 YVDINVTDQAIAGLNGMQLGD-KKLLVQRASVGAK 196 (198)
T ss_dssp ESSSSHHHHHHHHHTTCEETT-EECEEEESCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECC-EEEEEEECCCCCC
Confidence 999999999999999999999 8999999987654
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.6e-30 Score=185.84 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=118.5
Q ss_pred ChhhhccCCCeeEEEEeeC-------CCCeEEEEeCCHHHHHHHHHHhCCceec---CcEEEEEEccCccccCCCCCCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-------KKDSALIQMAESHQAHLAMMHMDKLRVF---GKQMRVMISKHQAVQLPKEGQPD 70 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~s~~~~~~~~~~~~~~ 70 (184)
|.++|++||+|.+|++++. ++|||||+|.+.++|+.|++.|+|..+. ++++.+.++......
T Consensus 20 l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 91 (175)
T 3nmr_A 20 LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-------- 91 (175)
T ss_dssp HHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS--------
T ss_pred HHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc--------
Confidence 5789999999999999872 4689999999999999999999998876 577777766522110
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeC
Q psy17274 71 AGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLD 146 (184)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~ 146 (184)
..+.++|||+|||+.+|+++|+++|++|| .|..+++..+ .+|+|||+|.
T Consensus 92 --------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 92 --------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG-QIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp --------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEES
T ss_pred --------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC-CEEEEEEEECCCCCEEEEEEEEEC
Confidence 01467899999999999999999999999 9999999764 2679999999
Q ss_pred CHHHHHHHHHHhcCeecCCC--CeEEEEecC
Q psy17274 147 SIEEAITALIQMHNHQLSEQ--SHLRVSFSK 175 (184)
Q Consensus 147 ~~~~A~~Ai~~lng~~i~g~--~~l~v~~~~ 175 (184)
+.++|.+|+..|||..+.+. ++|+|+|+.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999988631 799999973
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.7e-30 Score=184.41 Aligned_cols=136 Identities=21% Similarity=0.351 Sum_probs=119.1
Q ss_pred ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCC
Q psy17274 1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP 69 (184)
Q Consensus 1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~ 69 (184)
|.++|++| | .|.++++.+ ++|+|||+|.++++|.+|+ .|||..+.|++|.|.++.....
T Consensus 21 l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~-------- 90 (172)
T 2g4b_A 21 MMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP-------- 90 (172)
T ss_dssp HHHHHHHHHHHTTCCSSSSCSEEEEEEET-TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC--------
T ss_pred HHHHHHHHhhhcccccCCCCceeeeEecC-CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC--------
Confidence 46889999 7 888888654 6899999999999999999 8999999999999987652110
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEE
Q psy17274 70 DAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQ 144 (184)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~ 144 (184)
..+.++|+|+|||..+|+++|+++|++|| .|..+++..+. +|+|||+
T Consensus 91 ---------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 91 ---------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp ---------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCSEEEEEEEE
T ss_pred ---------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcC-CceEEEEEecCCCCCcceEEEEE
Confidence 00356799999999999999999999999 99999997642 6899999
Q ss_pred eCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 145 f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
|.+.++|.+|+..|||..++| ++|+|+|+.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g-~~l~V~~As 172 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGD-KKLLVQRAS 172 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred eCCHHHHHHHHHHcCCCEECC-eEEEEEeCC
Confidence 999999999999999999999 899999974
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3e-30 Score=187.79 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=119.8
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|++. +|..+.|+.|.|.++.......
T Consensus 30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~------------ 96 (196)
T 1l3k_A 30 LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQ------------ 96 (196)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------------
T ss_pred HHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccccc------------
Confidence 5789999999999999873 468999999999999999966 9999999999999886332110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
.+ ....+.++|||+|||+++|+++|+++|++|| .|..+++... .+|+|||+|.+.++
T Consensus 97 -----------~~------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 97 -----------RP------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp -----------------------CCSEEEEECCTTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred -----------cc------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 00 0111567899999999999999999999999 9999999863 26899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
|.+|+.. +|..++| +.|+|.|+.++.
T Consensus 159 A~~A~~~-~~~~~~G-~~i~v~~a~~k~ 184 (196)
T 1l3k_A 159 VDKIVIQ-KYHTVNG-HNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHC-SCCEETT-EECEEEECC---
T ss_pred HHHHHHh-CCcEECC-EEEEEEecCChh
Confidence 9999986 8999999 899999998763
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6.9e-31 Score=188.17 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=116.1
Q ss_pred ChhhhccCCCeeEEEEe----eCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccc
Q psy17274 1 MFSLTGVYGDVLRVKIL----YNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKD 76 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~----~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~ 76 (184)
|.++|+.||.|..+.+. ..++|||||+|.++++|.+|+ .|||..+.|++|.|.++......
T Consensus 30 l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~-------------- 94 (175)
T 1fje_B 30 LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSK-------------- 94 (175)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCS--------------
T ss_pred HHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcccc--------------
Confidence 45688888876552221 147899999999999999999 59999999999999988632110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHH
Q psy17274 77 YTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~ 156 (184)
...++++|||+|||..+|+++|+++|++|| .|..+......+|+|||+|.+.++|.+|+.
T Consensus 95 -------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g-~v~~~~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 95 -------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL-EIRLVSQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp -------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS-EEEEECSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred -------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC-eEEEecCCCCCceEEEEEECCHHHHHHHHH
Confidence 001567899999999999999999999999 887661112357999999999999999999
Q ss_pred HhcCeecCCCCeEEEEecCcc
Q psy17274 157 QMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 157 ~lng~~i~g~~~l~v~~~~~~ 177 (184)
.|||..++| +.|+|+|++++
T Consensus 155 ~l~g~~~~g-~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDG-RSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETT-EEEEEEECSSC
T ss_pred HhCCCEECC-eEEEEEecCCC
Confidence 999999999 89999999864
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.3e-30 Score=183.95 Aligned_cols=137 Identities=14% Similarity=0.216 Sum_probs=119.1
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|++++ .++|||||+|.+.++|..|++. +..+.|+.|.+.++......
T Consensus 20 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~------------- 84 (167)
T 2cjk_A 20 LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQ------------- 84 (167)
T ss_dssp HHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHH-------------
T ss_pred HHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhc-------------
Confidence 568999999999999886 2579999999999999999984 67899999998877522110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~ 150 (184)
.++++|||+|||+++|+++|+++|++|| .|..+++..+ ++|+|||+|.+.++
T Consensus 85 ----------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 85 ----------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG-TIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp ----------------------HHCEEEEEEEECTTCCHHHHHHHHHTTS-CCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred ----------------------cCCCeEEECCCCCCCCHHHHHHHHHhCc-cEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 0456899999999999999999999999 9999998753 36899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
|.+|++ +||..++| +.|+|.|++++
T Consensus 142 a~~A~~-~~~~~~~g-~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKD-RKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSS-SCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCC-eEEEEeecCCC
Confidence 999998 89999999 89999999875
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1e-29 Score=195.22 Aligned_cols=144 Identities=19% Similarity=0.185 Sum_probs=126.0
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.......
T Consensus 112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~------------ 179 (284)
T 3smz_A 112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP------------ 179 (284)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT------------
T ss_pred HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc------------
Confidence 4689999999999998862 46899999999999999999999999999999999986332210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCC-CHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASV-TEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEE 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~ 150 (184)
...+.++|||+|||+++ |+++|+++|++|| .|..+++..+ .+|+|||+|.+.++
T Consensus 180 --------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 180 --------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH-SPTFCQLACGQDGQLKGFAVLEYETAEM 238 (284)
T ss_dssp --------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS-CCSEEEEEECSSCCEEEEEEEECSSHHH
T ss_pred --------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC-CeEEEEEEECCCCCcccEEEEEeCCHHH
Confidence 00157789999999996 9999999999999 9999998763 26899999999999
Q ss_pred HHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 151 AITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 151 A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
|.+|+..|||..++| ++|+|+|+++..
T Consensus 239 A~~A~~~l~g~~~~g-~~l~v~~a~~~~ 265 (284)
T 3smz_A 239 AEEAQQQADGLSLGG-SHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHTTCEETT-EECEEEECCSSS
T ss_pred HHHHHHHhCCCccCC-eEEEEEEecCCC
Confidence 999999999999999 899999998763
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3.2e-29 Score=193.19 Aligned_cols=146 Identities=16% Similarity=0.258 Sum_probs=123.1
Q ss_pred ChhhhccCC-CeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccc
Q psy17274 1 MFSLTGVYG-DVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTK 75 (184)
Q Consensus 1 L~~lF~~yG-~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 75 (184)
|.++|++|| .|.+|+++. .++|+|||+|.+.++|..|++.|+|..+.|++|.|.++.......
T Consensus 134 l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~------------ 201 (292)
T 2ghp_A 134 IRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK------------ 201 (292)
T ss_dssp HHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------
T ss_pred HHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc------------
Confidence 568999999 999999876 368999999999999999999999999999999999987332210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCH
Q psy17274 76 DYTASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSI 148 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~ 148 (184)
+. .....++++|||+|||+. +|+++|+++|++|| .|..|++..+ .+|+|||+|.+.
T Consensus 202 --------~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 202 --------RT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFG-SIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp ---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS-CEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred --------cc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccC-CeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 00 001126789999999999 99999999999999 9999998753 368999999999
Q ss_pred HHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 149 EEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 149 ~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++|.+|+ .|||..++| +.|+|+|++++
T Consensus 265 ~~A~~A~-~l~g~~~~g-~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGN-REISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETT-EEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECC-cEEEEEEecCC
Confidence 9999999 999999999 89999999875
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.4e-28 Score=188.98 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=121.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|.++|+.|| |.++++ ..++|+|||+|.++++|..|++.|||..+.|++|.|.++.
T Consensus 39 l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----------------------- 93 (284)
T 3smz_A 39 VHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----------------------- 93 (284)
T ss_dssp HHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----------------------
T ss_pred HHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----------------------
Confidence 578999999 999987 5578999999999999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHH
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITAL 155 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai 155 (184)
+..+|||+|||+.+|+++|+++|++|| .|..+++..+ ++|+|||+|.+.++|..|+
T Consensus 94 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 94 ------------------TDALLCVANLPPSLTQQQFEELVRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 154 (284)
T ss_dssp ------------------CSCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred ------------------CCCEEEEcCCCCcCCHHHHHHHHHhcC-CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999 8999988753 2589999999999999999
Q ss_pred HHhcCeecCCCCeEEEEecCccc
Q psy17274 156 IQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 156 ~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
..|||..++| +.|+|.|+....
T Consensus 155 ~~l~~~~~~g-~~i~v~~a~~~~ 176 (284)
T 3smz_A 155 SDLLGKPLGP-RTLYVHWTDAGQ 176 (284)
T ss_dssp HHHTTCEETT-EECEEEECCGGG
T ss_pred HHhCCCEeCC-cEEEEEECCCCC
Confidence 9999999999 899999998764
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.9e-29 Score=188.79 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTAS 80 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|.++|++||.|.+|++.+ ++|+|||+|.+.++|..|++.|||..+.|++|.|.++.
T Consensus 39 l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~----------------------- 94 (261)
T 3sde_A 39 FKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----------------------- 94 (261)
T ss_dssp HHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-----------------------
T ss_pred HHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-----------------------
Confidence 568999999999999865 67999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHH
Q psy17274 81 PLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALI 156 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~ 156 (184)
++.+|||+|||+.+|+++|+++|++|| .|..|.+..+ ++|+|||+|.+.++|.+|+.
T Consensus 95 ------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 95 ------------------HGAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp ------------------CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHH
T ss_pred ------------------cCCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 456899999999999999999999999 9999998763 36899999999999999999
Q ss_pred Hhc-CeecC---CCCeEEEEecCcc
Q psy17274 157 QMH-NHQLS---EQSHLRVSFSKSN 177 (184)
Q Consensus 157 ~ln-g~~i~---g~~~l~v~~~~~~ 177 (184)
.|| |..+. + ++|.|.++...
T Consensus 156 ~l~~~~~~~~~~~-r~i~v~~~~~~ 179 (261)
T 3sde_A 156 RCGDGAFLLTTTP-RPVIVEPMEQF 179 (261)
T ss_dssp HHHHSCEESSSSC-CBCEEEECCCE
T ss_pred HhcCCeEEecCCC-ceEEEeecccc
Confidence 995 44444 7 89999998765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=9.4e-28 Score=184.96 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=119.3
Q ss_pred ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|.++|+.||+|.+|+++.. ++|+|||+|.+.++|.+|+ .+||..+.|++|.|.++
T Consensus 58 l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~--------------------- 115 (292)
T 2ghp_A 58 VYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL--------------------- 115 (292)
T ss_dssp HHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC---------------------
T ss_pred HHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC---------------------
Confidence 5789999999999999873 5799999999999999999 59999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAIT 153 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~ 153 (184)
+.++|||+|||+.+++++|+++|++||..|..+.+... .+|+|||+|.+.++|.+
T Consensus 116 ---------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 116 ---------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ---------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred ---------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 25579999999999999999999999956888888652 47999999999999999
Q ss_pred HHHHhcCeecCCCCeEEEEecCcc
Q psy17274 154 ALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 154 Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
|+..|||..+.| +.|+|.|+.+.
T Consensus 175 A~~~l~g~~~~g-~~l~v~~a~~~ 197 (292)
T 2ghp_A 175 CVEKLNGLKIEG-YTLVTKVSNPL 197 (292)
T ss_dssp HHHHHTTCEETT-EECEEEECCCC
T ss_pred HHHHhCCCEeCC-cEEEEEECCCC
Confidence 999999999999 89999998765
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.95 E-value=5.6e-27 Score=164.24 Aligned_cols=138 Identities=13% Similarity=0.154 Sum_probs=112.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q psy17274 19 NKKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIY 97 (184)
Q Consensus 19 ~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (184)
..+|+++|+|.++++|++|++.| ||..+.| +|.+.++............ +.........
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~ 70 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDSC 70 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSSS
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccCC
Confidence 35799999999999999999999 9999999 9999877643221100000 0000001122
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+.++|||+|||+.+|+++|+++|++|| .|..|++..+++|+|||+|.+.++|..|+..|||..+.| ++|+|+|++++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYG-PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG-CRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHS-CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSS-SCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEcCCC
Confidence 2678999999999999999999999999 999999987679999999999999999999999999999 89999999875
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=2.4e-25 Score=157.08 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=104.6
Q ss_pred EEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCC
Q psy17274 14 VKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGS 90 (184)
Q Consensus 14 v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (184)
++++. .++|||||+|.++++|++|++.+++....+..+.+............. . .
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~------~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------H------H 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------C------C
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------c------c
Confidence 44444 468999999999999999999988754444443333211110000000 0 0
Q ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 91 KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 91 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
........+..+|||+|||+.+|+++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+..|||..++|
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 00001112578999999999999999999999999 9999998753 46899999999999999999999999999
Q ss_pred CCeEEEEecCcc
Q psy17274 166 QSHLRVSFSKSN 177 (184)
Q Consensus 166 ~~~l~v~~~~~~ 177 (184)
+.|+|.|++++
T Consensus 140 -~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 -RELRVQMARYG 150 (158)
T ss_dssp -SEEEEEEECCS
T ss_pred -eEEEEEECCCC
Confidence 89999999876
No 23
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=133.83 Aligned_cols=77 Identities=26% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCee--cCCCCeEEEEecC
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ--LSEQSHLRVSFSK 175 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~--i~g~~~l~v~~~~ 175 (184)
+|+++|||+|||+++|+++|+++|++|| .|.++.+.+ .||+|||+|++.++|..|+..|||.. +.| ++|+|+||+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG-~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G-r~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFG-PISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAG-HPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETT-EEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCC-cEEEEEecc
Confidence 4899999999999999999999999999 999999884 89999999999999999999999986 789 899999998
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
++
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=131.74 Aligned_cols=76 Identities=20% Similarity=0.399 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.+++|||+|||+++|+++|+++|++|| .|.++++..+ .+|+|||+|.+.++|.+|++.|||..++| ++|+|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-r~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-KTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence 567899999999999999999999999 9999998753 25899999999999999999999999999 8999999
Q ss_pred cCc
Q psy17274 174 SKS 176 (184)
Q Consensus 174 ~~~ 176 (184)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 985
No 25
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.4e-22 Score=129.63 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh--cCeecCCCCeEEEEe
Q psy17274 96 IYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM--HNHQLSEQSHLRVSF 173 (184)
Q Consensus 96 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l--ng~~i~g~~~l~v~~ 173 (184)
..+|+++|||+|||+.+++++|+++|++|| .|..|.+.+ ++|+|||+|++.++|..|++.| ++..+.| ++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG-~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRN-QPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-cEEEEEE
Confidence 334889999999999999999999999999 999998875 6999999999999999999987 4678999 8999999
Q ss_pred cCcccccc
Q psy17274 174 SKSNIQDI 181 (184)
Q Consensus 174 ~~~~~~~~ 181 (184)
++.+....
T Consensus 88 a~~~~~~~ 95 (101)
T 2cq1_A 88 SNHKELKT 95 (101)
T ss_dssp CSCSSCCC
T ss_pred cCcccCcC
Confidence 99875443
No 26
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5.8e-22 Score=130.21 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe--ecCCCCeEEEEec
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH--QLSEQSHLRVSFS 174 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~--~i~g~~~l~v~~~ 174 (184)
.+|+++|||+|||+.+++++|+++|++|| .|..|.+.+ .+++|||+|++.++|.+|++.||+. .+.| ++|+|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG-~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G-r~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG-QQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS-SBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEc
Confidence 34789999999999999999999999999 999998875 7999999999999999999999765 4999 89999999
Q ss_pred Ccccc
Q psy17274 175 KSNIQ 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87643
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.2e-22 Score=131.77 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l~v~~~~~ 176 (184)
++++|||+|||+++|+++|+++|++|| .|.+|++++ ++|+|||+|++.++|..|++.|+ +..+.| ++|+|+|++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~A~~ 91 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFSNH 91 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETT-EECCBCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEcCC
Confidence 688999999999999999999999999 999999985 79999999999999999999886 478999 8999999998
Q ss_pred cccc
Q psy17274 177 NIQD 180 (184)
Q Consensus 177 ~~~~ 180 (184)
+...
T Consensus 92 ~~~~ 95 (105)
T 1sjq_A 92 KELK 95 (105)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7443
No 28
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.3e-22 Score=129.68 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe--ecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH--QLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~--~i~g~~~l~v~~~~ 175 (184)
|+++|||+|||+ .+|+++|+++|++|| .|.+|.+++ ++++|||+|++.++|..|+..||+. .+.| ++|+|.|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG-~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFG-KPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC-CEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECC-cEEEEEECC
Confidence 789999999999 999999999999999 999999884 7899999999999999999999975 5999 899999998
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
..
T Consensus 91 ~~ 92 (102)
T 1x4d_A 91 KY 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 29
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=130.96 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC--eecCCCCeEEEEec
Q psy17274 97 YPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN--HQLSEQSHLRVSFS 174 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng--~~i~g~~~l~v~~~ 174 (184)
.+|+++|||+|||+++|+++|+++|++|| .|.+|++.+ ++|+|||+|++.++|.+|++.|++ ..+.| ++|+|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG-~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-r~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTS-CCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTT-BCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECC-eEEEEEEc
Confidence 34789999999999999999999999999 999999885 689999999999999999999985 68999 89999999
Q ss_pred Cccccc
Q psy17274 175 KSNIQD 180 (184)
Q Consensus 175 ~~~~~~ 180 (184)
+.+...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 987443
No 30
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2e-21 Score=122.03 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.+.-|+|+||++.+|+++|+++|.+|| +|.++++.. ++|+|||+|.+.++|.+|++.|||..+.| ++|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G-~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-r~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHG-PLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLAN-TTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhC-CEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEECC
Confidence 456799999999999999999999999 999999875 89999999999999999999999999999 899999985
No 31
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=128.85 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC--eecCCCCeEEEEe
Q psy17274 97 YPPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN--HQLSEQSHLRVSF 173 (184)
Q Consensus 97 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng--~~i~g~~~l~v~~ 173 (184)
.+|+++|||+|||++ +++++|+++|++|| .|.+|.+. +++++|||+|++.++|..|+..||+ ..+.| ++|+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG-~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQG-RCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS-SCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC-CEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEE
Confidence 447899999999998 99999999999999 99999987 4799999999999999999999865 56999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++..
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=126.01 Aligned_cols=79 Identities=15% Similarity=0.368 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEe
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSF 173 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~ 173 (184)
+++|||+|||+++|+++|+++|++||..|.+|+++. .++|+|||+|.+.++|.+|++.| |+..++| ++|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g-r~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG-QKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC-EEEEEEE
Confidence 468999999999999999999999995588898875 24799999999999999999987 4668999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987754
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=127.60 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
|.++|||+|||+.+++++|+++|++|| .|.+|+|..+ ++|+|||+|++.++|.+|++.|||..+.| +.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-r~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG-NIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 678999999999999999999999999 9999998752 36899999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++..
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9765
No 34
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.8e-21 Score=133.87 Aligned_cols=120 Identities=17% Similarity=0.197 Sum_probs=73.2
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17274 22 DSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSP 101 (184)
Q Consensus 22 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (184)
-++|++|++...|..|++.++|..-.|+.- ..++. .+. ...+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------~~~------~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------PPP------DVEGMT 48 (135)
T ss_dssp -------------------------------CCSCC-----------------------------SCS------SGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------CCC------CCCCCC
Confidence 467899999999999999999876555430 00000 000 011567
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
+|||+|||..+|+++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+..|||..+.| ++|+|.|++.
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~a~~ 126 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-RELRVQMARY 126 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-SCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence 899999999999999999999999 9999998752 36899999999999999999999999999 8999999987
Q ss_pred ccc
Q psy17274 177 NIQ 179 (184)
Q Consensus 177 ~~~ 179 (184)
+..
T Consensus 127 ~~~ 129 (135)
T 2lea_A 127 GRP 129 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-20 Score=121.59 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+ ++++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG-KEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-CeEEEEECC
Confidence 678999999999999999999999999 9999998863 46899999999999999999999999999 899999999
Q ss_pred ccccc
Q psy17274 176 SNIQD 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
.+...
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 87543
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=9.4e-21 Score=119.88 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+++++|+++|++|| .|..+.+..+ .+++|||+|.+.++|.+|++.|||..++| ++|+|+|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 83 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL 83 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence 678999999999999999999999999 9999988653 37899999999999999999999999999 8999999
Q ss_pred cC
Q psy17274 174 SK 175 (184)
Q Consensus 174 ~~ 175 (184)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=8e-21 Score=127.13 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
+.+|||+|||+++|+++|+++|++|| .|.+|+|..+ ++|+|||+|.+.++|.+|++.|||..++| +.|+|.+++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccC-CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECCC
Confidence 56799999999999999999999999 9999998763 26899999999999999999999999999 8999999876
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 5
No 38
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=122.71 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++.++|||+|||+.+|+++|+++|++|| .|..+++. .++++|||+|.+.++|.+|+..|||..+.| ++|+|.|++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRG-KQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTT-BCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCC-ceEEEEEcCCC
Confidence 3678999999999999999999999999 99999987 479999999999999999999999999999 89999999876
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.5e-20 Score=121.72 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
|+++|||+|||..+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|.+|++.|||..++| +.|+|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-RFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEE
Confidence 578999999999999999999999999 9999998753 27899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+.
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98773
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=119.77 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||.++++++|+++|++|| .|.++++..+ .+++|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEe
Confidence 577899999999999999999999999 9999998763 26899999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9875
No 41
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=121.47 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC--CCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS--EQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~--g~~~l~v~~~~~ 176 (184)
++++|||+|||+.+|+++|+++|++|| .|..+.+.. .+++|||+|.+.++|.+|+..|||..+. | +.|+|.|+++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g-~~l~V~~a~~ 92 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPD-RRLRVDFAKS 92 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSS-CBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCC-cEEEEEECCC
Confidence 678999999999999999999999999 999999885 6899999999999999999999999999 8 8999999987
Q ss_pred cc
Q psy17274 177 NI 178 (184)
Q Consensus 177 ~~ 178 (184)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 42
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=120.77 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+.+++++|+++|++|| .|..+.+..+ .+++|||+|.+.++|.+|+..|||..+.| ++|+|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 91 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRVSG 91 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEe
Confidence 678999999999999999999999999 9999998753 25899999999999999999999999999 8999999
Q ss_pred cCc
Q psy17274 174 SKS 176 (184)
Q Consensus 174 ~~~ 176 (184)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=119.42 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 92 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG-RVIKASI 92 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT-EEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEe
Confidence 678899999999999999999999999 9999998753 36899999999999999999999999999 8999999
Q ss_pred cC
Q psy17274 174 SK 175 (184)
Q Consensus 174 ~~ 175 (184)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 44
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=127.18 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
|+++|||+|||+.+++++|+ ++|++|| .|..|.+.. ..+|+|||+|.+.++|..|+..|||..+.| ++|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G-~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-r~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQG-DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG-NPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT-SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCC-CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC-CEEEEE
Confidence 68899999999999999876 6999999 999998864 357999999999999999999999999999 899999
Q ss_pred ecCccc
Q psy17274 173 FSKSNI 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
|++.+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 999764
No 45
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=118.84 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v~~~~ 175 (184)
+.++|||+|||..+++++|+++|++|| .|..+++.+ ++++|||+|.+.++|.+|+..| ||..+.| ++|+|.|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g-~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNG-RRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTS-CEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETT-EECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCC-CEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECC-CEEEEEecC
Confidence 577899999999999999999999999 999999885 7899999999999999999999 9999999 899999986
No 46
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.84 E-value=2.2e-20 Score=126.64 Aligned_cols=83 Identities=29% Similarity=0.403 Sum_probs=72.9
Q ss_pred CCCE--EEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCce-EEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEec
Q psy17274 99 PSPT--LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-ALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFS 174 (184)
Q Consensus 99 ~~~~--l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~-afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~ 174 (184)
|+++ |||+||++.+|+++|+++|++|| .|.+|.++.+.+++ |||+|.+.++|..|++.|||..|.|. ++|+|+|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG-~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSS-CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcC-CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4555 56999999999999999999999 99999998767787 99999999999999999999999872 48999999
Q ss_pred Cccccccc
Q psy17274 175 KSNIQDIR 182 (184)
Q Consensus 175 ~~~~~~~~ 182 (184)
+..-..+.
T Consensus 104 k~~~l~v~ 111 (130)
T 3zzy_A 104 KLTSLNVK 111 (130)
T ss_dssp SCSSCCCC
T ss_pred CCCceeEE
Confidence 98754444
No 47
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=1.1e-20 Score=134.21 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=72.5
Q ss_pred EEeCCHHHHHHHHHHhCCceec--CcEEEEEEccCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q psy17274 26 IQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKHQAVQLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSPTL 103 (184)
Q Consensus 26 V~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (184)
.+|.+.++|..|+..|++.... |+.+....+..... .......++... ...|. .....++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~----------~~~~~~~~s~~~-~~~~~----~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAI----------HSYERVRNEDDD-ELEPG----PQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccc----------cCccccccCCCC-CCCCC----CCCCCCCCEE
Confidence 7899999999999999997665 55555544321100 000000000000 00000 0112257889
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 104 HLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 104 ~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
||+|||+.+++++|+++|++|| .|..|.+... .+|+|||+|.+.++|..||..|||..|.| +.|+|.|++...
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~~ 153 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDWCFVKG 153 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEESEECC
T ss_pred EEeCCCCCCCHHHHHHHhhcCC-CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEecCCC
Confidence 9999999999999999999999 9999999863 26899999999999999999999999999 899999998664
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=122.03 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~ 88 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVNL 88 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEe
Confidence 678899999999999999999999999 9999998753 47899999999999999999999999999 8999999
Q ss_pred cCccccc
Q psy17274 174 SKSNIQD 180 (184)
Q Consensus 174 ~~~~~~~ 180 (184)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887543
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=119.64 Aligned_cols=79 Identities=25% Similarity=0.446 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..++|||+|||..+++++|+ ++|++|| .|.+|++..+ .+++|||+|.+.++|.+|++.|||..+.| ++|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G-~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g-r~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS-KKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC-cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEE
Confidence 46789999999999999999 9999999 9999999853 27899999999999999999999999999 899999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|++.+..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987643
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-20 Score=119.58 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 91 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEcc
Confidence 678999999999999999999999999 9999999853 27899999999999999999999999999 899999999
Q ss_pred cccc
Q psy17274 176 SNIQ 179 (184)
Q Consensus 176 ~~~~ 179 (184)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8754
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=119.28 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG-RPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEE
Confidence 678999999999999999999999999 9999998763 36899999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++.+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987743
No 52
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1e-19 Score=122.69 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCEE--EEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCce-EEEEeCCHHHHHHHHHHhcCeecCCC-CeEEEEec
Q psy17274 99 PSPTL--HLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM-ALLQLDSIEEAITALIQMHNHQLSEQ-SHLRVSFS 174 (184)
Q Consensus 99 ~~~~l--~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~-afV~f~~~~~A~~Ai~~lng~~i~g~-~~l~v~~~ 174 (184)
|+++| ||+|||+.+|+++|+++|++|| .|.+|.++.+ .|+ |||+|++.++|..|++.|||..|.|. +.|+|.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG-~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVG-KVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTS-CEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcC-CEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 66664 6899999999999999999999 9999999764 585 99999999999999999999999872 48999999
Q ss_pred Ccccccc
Q psy17274 175 KSNIQDI 181 (184)
Q Consensus 175 ~~~~~~~ 181 (184)
+.+...+
T Consensus 100 k~~~l~v 106 (124)
T 2e5i_A 100 RPTRLNV 106 (124)
T ss_dssp SCSCCCC
T ss_pred cCCccee
Confidence 9884443
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=120.02 Aligned_cols=78 Identities=15% Similarity=0.347 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++... .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~ 98 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-YRLRVEFPRS 98 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT-EECEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEccc
Confidence 678999999999999999999999999 9999998653 36899999999999999999999999999 8999999987
Q ss_pred cc
Q psy17274 177 NI 178 (184)
Q Consensus 177 ~~ 178 (184)
..
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.7e-20 Score=120.60 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHh-cCeecCCCCeEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQM-HNHQLSEQSHLRV 171 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~l-ng~~i~g~~~l~v 171 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..| ||..+.| +.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g-~~l~v 91 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG-RRLVL 91 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS-CBCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC-CEEEE
Confidence 678899999999999999999999999 9999998754 2799999999999999999999 9999999 89999
Q ss_pred EecCccc
Q psy17274 172 SFSKSNI 178 (184)
Q Consensus 172 ~~~~~~~ 178 (184)
.|++...
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998764
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=120.47 Aligned_cols=79 Identities=15% Similarity=0.356 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 88 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-RQIRVDQ 88 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-CCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 678999999999999999999999999 9999999763 36899999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987643
No 56
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=5.7e-20 Score=119.29 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 98 PPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 98 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
+++++|||+|||. .+++++|+++|++|| .|..+++ .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFG-KKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGS-CEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETT-EECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEecCC
Confidence 3788999999998 999999999999999 9999987 37999999999999999999999999999 8999999987
Q ss_pred cc
Q psy17274 177 NI 178 (184)
Q Consensus 177 ~~ 178 (184)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=118.01 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
+.++|||+|||.++++++|+++|++|| .|..+++. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~~~ 81 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYG-KVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHG-VNINVEASKNKS 81 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEECSSCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCC-cEEEEEECCCCC
Confidence 678999999999999999999999999 99999887 6899999999999999999999999999 899999998775
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 82 ~ 82 (90)
T 2dnq_A 82 K 82 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=122.27 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCe----ecCCCCeE
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNH----QLSEQSHL 169 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~----~i~g~~~l 169 (184)
-.+|||+|||+.+|+++|+++|++||. .+.+|++..+ ++|+|||+|.+.++|.+|++.|||. .++| |+|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-r~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-KTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-EEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-EEE
Confidence 468999999999999999999999993 2568887652 4789999999999999999999997 5899 999
Q ss_pred EEEecCc
Q psy17274 170 RVSFSKS 176 (184)
Q Consensus 170 ~v~~~~~ 176 (184)
+|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999986
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=4e-20 Score=116.43 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=69.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
.+|||+|||+++++++|+++|++|| .|..+.+..+ .+++|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-RPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC-cEEEEEecC
Confidence 5799999999999999999999999 9999998753 26899999999999999999999999999 899999998
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
++
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 60
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=117.79 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEK--GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+++++|||+|||..+|+++|+++|++| | .|..+++. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g-~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG-AVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDG-SPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTT-CEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETT-EEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCC-cEEEEEECC
Confidence 368899999999999999999999999 7 89888764 6899999999999999999999999999 899999998
Q ss_pred cccc
Q psy17274 176 SNIQ 179 (184)
Q Consensus 176 ~~~~ 179 (184)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=117.67 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+.++|||+|||..+|+++|+++|++|| .|..+++..+. +++|||+|.+.++|.+|+..|||..++| +.|+|.|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 93 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE-NIIKVAIS 93 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence 577899999999999999999999999 99999987632 5899999999999999999999999999 89999999
Q ss_pred Cccc
Q psy17274 175 KSNI 178 (184)
Q Consensus 175 ~~~~ 178 (184)
+++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 62
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=119.22 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+|+++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 84 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-RMLHVLP 84 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-CEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence 678999999999999999999999999 9999998752 36899999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 998744
No 63
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=124.13 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
+.++|||+|||+.+++++|+++|++|| .|..|.+. ..+++|||+|.+.++|..|+..|||+.+.| +.|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG-SLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHH-VPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECC-eEEEEEECCCC
Confidence 467899999999999999999999999 99999877 488999999999999999999999999999 89999999865
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=120.44 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+.++|||+|||+.+|+++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-KPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEec
Confidence 678899999999999999999999999 9999998853 36899999999999999999999999999 899999998
Q ss_pred ccc
Q psy17274 176 SNI 178 (184)
Q Consensus 176 ~~~ 178 (184)
.+.
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 65
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=117.36 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..++|||+|||.++|+++|+++|++|| .|..+.+..+ .+++|||+|.+.++|.+|+..|||..++| +.|+|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-QEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-eEEEEE
Confidence 457899999999999999999999999 9999988652 47899999999999999999999999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
++.++
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99765
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=119.26 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 91 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-KPIRVNK 91 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-CBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEE
Confidence 678999999999999999999999999 9999998763 36899999999999999999999999999 8999999
Q ss_pred cCccccc
Q psy17274 174 SKSNIQD 180 (184)
Q Consensus 174 ~~~~~~~ 180 (184)
++.....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9877543
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=120.75 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-HKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-eEEE
Confidence 678899999999999999999999999 9999998742 25899999999999999999999999999 8999
Q ss_pred EEecCcccc
Q psy17274 171 VSFSKSNIQ 179 (184)
Q Consensus 171 v~~~~~~~~ 179 (184)
|.|++....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987643
No 68
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=116.46 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
+.++|||+|||..+|+++|+++|++|| .|..+++. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~ 82 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKG-KRINVELSTKGQ 82 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEECCCCC
Confidence 577899999999999999999999999 99999887 3599999999999999999999999999 899999998774
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=119.69 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEE-EEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF-KFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v-~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
++++|||+|||..+++++|+++|++|| .|..+ ++..+ .+++|||+|.+.++|.+|+..|||..+.| ++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-RPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEE
Confidence 678999999999999999999999999 89888 88753 36899999999999999999999999999 899999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|++++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987643
No 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.6e-20 Score=121.45 Aligned_cols=78 Identities=14% Similarity=0.368 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
+.++|||+|||..+++++|+++|++|| .|..|++.. .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~ 100 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEG-HVVKCYWGKESP 100 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEecCCCC
Confidence 578999999999999999999999999 999999885 59999999999999999999999999999 899999999874
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 71
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.4e-20 Score=121.17 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+++|||+|||..+++++|+++|++|| .|..+++. .++++|||+|.+.++|.+|+..|||..++| +.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG-FILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQG-RNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETT-EECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC-CEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEeccCC
Confidence 468999999999999999999999999 99999988 589999999999999999999999999999 89999999863
No 72
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=120.16 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 91 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-LILNVEW 91 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEE
Confidence 678999999999999999999999999 9999998753 25799999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++.+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
No 73
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=116.03 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|||..+++++|+++|++|| .|..+.+. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~~ 83 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYG-PVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQG-KRMHVQLSTSRL 83 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETT-EEEEEEESSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEccCCC
Confidence 678999999999999999999999999 99999887 3599999999999999999999999999 899999998764
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 74
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.7e-19 Score=120.56 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 91 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNW 91 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence 678999999999999999999999999 99999997632 5899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98764
No 75
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=6.2e-20 Score=121.75 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
...+|||+|||+++++++|+++|++||..|..+.+. .+.+|+|||+|.+.++|.+|++.|||..+.| +.|+|.+++.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-r~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG-SVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT-EEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECCCC
Confidence 456899999999999999999999999458888885 3468999999999999999999999999999 89999999876
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=117.58 Aligned_cols=75 Identities=19% Similarity=0.331 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
+..+|||+|||.++++++|+++|++|| .|.. +++..+ .+|+|||+|.+.++|.+|++.|||..+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 678999999999999999999999999 8988 888753 25899999999999999999999999999
Q ss_pred CCeEEEEecC
Q psy17274 166 QSHLRVSFSK 175 (184)
Q Consensus 166 ~~~l~v~~~~ 175 (184)
+.|+|.|++
T Consensus 91 -~~l~V~~A~ 99 (99)
T 2la6_A 91 -NPIKVSFAT 99 (99)
T ss_dssp -SBCEEEECC
T ss_pred -cEEEEEecC
Confidence 899999975
No 77
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=3.9e-20 Score=119.93 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
|+++|||+|||..+++++|+ ++|++|| .|..|.+.. ..+|+|||+|.+.++|..|+..|||..+.| +.|+|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G-~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS-CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC-cEEEEE
Confidence 78899999999999999999 9999999 999998864 247999999999999999999999999999 899999
Q ss_pred ecCccccc
Q psy17274 173 FSKSNIQD 180 (184)
Q Consensus 173 ~~~~~~~~ 180 (184)
|++++...
T Consensus 85 ~a~~~~~~ 92 (97)
T 1nu4_A 85 YAKTDSDI 92 (97)
T ss_dssp ECSSCCTH
T ss_pred EccCCCcc
Confidence 99987543
No 78
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.2e-19 Score=118.91 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|||+.+|+++|+++|++|| .|..|++. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~ 84 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFG-KLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEG-ENIEIVFAKPPD 84 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHS-CEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCC-CEEEEEEcCCCc
Confidence 678899999999999999999999999 99999876 4699999999999999999999999999 899999998764
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 85 ~ 85 (103)
T 2dgu_A 85 Q 85 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 79
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=120.85 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|.+|++.|||..++| +.|+|+|
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~ 102 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG-RPMKVGH 102 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 678999999999999999999999999 9999998753 25899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98753
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=118.44 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+.++|||+|||+.+++++|+++|++|| .|..|++..+. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-RPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-EECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-CEEEEEEc
Confidence 678999999999999999999999999 99999987632 6899999999999999999999999999 89999998
Q ss_pred Cc
Q psy17274 175 KS 176 (184)
Q Consensus 175 ~~ 176 (184)
++
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.9e-19 Score=120.26 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+. +++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 101 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-KRLKVQL 101 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 678899999999999999999999999 99999987632 4799999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98764
No 82
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=118.52 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhc------CeecCCCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMH------NHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~ln------g~~i~g~~ 167 (184)
++++|||+|||+.+|+++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|| |..+.| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-~ 91 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-R 91 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-C
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC-E
Confidence 678899999999999999999999999 9999998753 47899999999999999999999 999999 8
Q ss_pred eEEEEecCccc
Q psy17274 168 HLRVSFSKSNI 178 (184)
Q Consensus 168 ~l~v~~~~~~~ 178 (184)
.|+|.|++++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998763
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=117.81 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|++ |||..+.| +.|+|.|
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~l~V~~ 85 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-KKVEVKR 85 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-CBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC-eEEEEEE
Confidence 678999999999999999999999999 9999999753 47899999999999999999 99999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987643
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=121.02 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+.++|||+|||..+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|++
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~ 105 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVNNAT 105 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECC
Confidence 678999999999999999999999999 9999998753 37999999999999999999999999999 899999998
Q ss_pred ccc
Q psy17274 176 SNI 178 (184)
Q Consensus 176 ~~~ 178 (184)
.++
T Consensus 106 ~~~ 108 (109)
T 2err_A 106 ARV 108 (109)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 85
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.82 E-value=1.1e-19 Score=127.53 Aligned_cols=79 Identities=28% Similarity=0.312 Sum_probs=69.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-CCceEEEEeCCHHHHHHHHHHhcCeecCC-CCeEEEEecCccc
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-DRKMALLQLDSIEEAITALIQMHNHQLSE-QSHLRVSFSKSNI 178 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g-~~~l~v~~~~~~~ 178 (184)
..|||+||++.+|+++|+++|++|| .|.+|.++.+ .+++|||+|++.++|.+|++.|||..|.| +++|+|.|++.+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG-~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHS-CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3478999999999999999999999 9999998754 36799999999999999999999999953 1699999999874
Q ss_pred cc
Q psy17274 179 QD 180 (184)
Q Consensus 179 ~~ 180 (184)
..
T Consensus 126 l~ 127 (164)
T 1sjr_A 126 LN 127 (164)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 86
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=8.9e-20 Score=133.82 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp-~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++++|||+||| ..+|+++|+++|++|| .|.+|+++.+.+|+|||+|.+.++|..|++.|||..+.| ++|+|.|++.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G-~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG-NVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFG-QKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS-CEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC-CeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEEEccCC
Confidence 67899999999 8999999999999999 999999997778999999999999999999999999999 89999999753
No 87
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=8.1e-20 Score=117.26 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC---CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK---DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~---~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
++++|||+|||..+++++|+++|++|| .|..+++... .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECG-HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG-REIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-BCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence 678999999999999999999999999 9999998753 36899999999999999999999999999 899999998
Q ss_pred ccc
Q psy17274 176 SNI 178 (184)
Q Consensus 176 ~~~ 178 (184)
.+.
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 88
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=119.94 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=71.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcccc
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQ 179 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~~ 179 (184)
++|||+|||+++|+++|+++|++|| .|..+.+..+.+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG-PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICG-SRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSS-CCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECC-cEEEEEEccCCCC
Confidence 3799999999999999999999999 999999886568999999999999999999999999999 8999999987643
No 89
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=1.2e-20 Score=152.70 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+|+++|.++|++|| .|..|.|+.. .+|+|||+|.+.++|..||..|||..|.| +.|.|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g-r~i~V~~ 178 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RRVLVDV 178 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 678999999999999999999999999 9999998753 37999999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98653
No 90
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=8.8e-20 Score=120.70 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|||..+|+++|+++|++|| .|..+++. +|+|||+|.+.++|.+|+..|||..++| +.|+|.|++.+.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~~~ 104 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFG-PMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFAN-QPLEVVYSKLPA 104 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEESCSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEecCCC
Confidence 678999999999999999999999999 99999887 7999999999999999999999999999 899999998764
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 105 ~ 105 (108)
T 2jvo_A 105 K 105 (108)
T ss_dssp -
T ss_pred C
Confidence 3
No 91
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.3e-20 Score=121.70 Aligned_cols=76 Identities=13% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCCEEEE--eCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec-----CCCCeEEE
Q psy17274 99 PSPTLHL--SNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL-----SEQSHLRV 171 (184)
Q Consensus 99 ~~~~l~v--~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i-----~g~~~l~v 171 (184)
|+++||| +||+.++|+++|+++|++|| .|..|.+. .++++|||+|++.++|.+|++.|||+.+ .| ++|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g-~~l~v 100 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK-ITLYL 100 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE-EECEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC-cEEEE
Confidence 7889999 66999999999999999999 99999876 4799999999999999999999999998 67 79999
Q ss_pred EecCcc
Q psy17274 172 SFSKSN 177 (184)
Q Consensus 172 ~~~~~~ 177 (184)
.|++.-
T Consensus 101 ~~a~~~ 106 (114)
T 2cq2_A 101 NFVEKV 106 (114)
T ss_dssp EEESCC
T ss_pred EecccC
Confidence 999754
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.5e-19 Score=119.89 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+|+++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~ 102 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVDW 102 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence 678999999999999999999999999 9999998753 26999999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98653
No 93
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.9e-19 Score=120.31 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC--CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK--DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~--~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
++++|||+|||..+|+++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|..|+..|||..+.| +.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN-RYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS-CBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEecC
Confidence 678999999999999999999999999 9999998643 47899999999999999999999999999 8999999986
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 5
No 94
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=118.58 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|.+..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~ 89 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-RELRVQV 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-BCCEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEE
Confidence 678999999999999999999999999 9999998753 36899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98764
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=120.71 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCceeEEEEccC--------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 99 PSPTLHLSNIPASVTEDELK---EAFTEKGFTVKGFKFFPK--------DRKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~~v~~v~v~~~--------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
+.++|||+|||+.+++++|+ ++|++|| .|..|.+..+ .+|+|||+|++.++|.+|++.|||..+.| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-r 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-R 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-E
Confidence 56789999999999999999 9999999 9999998753 23799999999999999999999999999 8
Q ss_pred eEEEEecCccc
Q psy17274 168 HLRVSFSKSNI 178 (184)
Q Consensus 168 ~l~v~~~~~~~ 178 (184)
+|+|.|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998875
No 96
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=119.65 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..|.+..+ .+|+|||+|.+.++|.+|+..|||..++| +.|+|.|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 99 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW 99 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEe
Confidence 578899999999999999999999999 9999998753 26899999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9865
No 97
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.3e-20 Score=118.03 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++++|||+|||+ .+++++|+++|++|| .|..+.+. +++|||+|.+.++|..|+..|||..+.| +.|+|.|++..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~~ 83 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFG-KKLILEVSSSN 83 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTC-CCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBT-TTBCEEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEEcCcC
Confidence 788999999998 999999999999999 99999874 6899999999999999999999999999 89999999765
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=2.8e-19 Score=117.75 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeec---CCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQL---SEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i---~g~~~l~ 170 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+ .| +.|+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~~l~ 89 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-RPIQ 89 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS-SCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC-ceEE
Confidence 678899999999999999999999999 9999998763 368999999999999999999999998 88 8999
Q ss_pred EEecCcccc
Q psy17274 171 VSFSKSNIQ 179 (184)
Q Consensus 171 v~~~~~~~~ 179 (184)
|.|++....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987644
No 99
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=114.18 Aligned_cols=74 Identities=24% Similarity=0.240 Sum_probs=66.1
Q ss_pred CCCE-EEEeCCCCCCCHHH----HHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPT-LHLSNIPASVTEDE----LKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~-l~v~nlp~~~t~~~----l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
|+.+ |||+|||..+++++ |+++|++||++|..| ..|+|||+|.+.++|.+|++.|||..+.| |+|+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G~~l~g-r~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMENEDVFG-NRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTTCCSSS-SCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcCCccCC-ceEEEEe
Confidence 6777 89999999999988 558999994388877 23999999999999999999999999999 9999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 99773
No 100
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=120.67 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+.++|||+|||.++|+++|+++|++|| .|..|.+..+ .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG-KAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-SBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence 567899999999999999999999999 8999998763 36999999999999999999999999999 89999999
Q ss_pred Ccccc
Q psy17274 175 KSNIQ 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
+.+..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87743
No 101
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.8e-19 Score=118.85 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||+.+|+++|+++|++|| .|..|++... .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 105 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-RPMNIQLV 105 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEEe
Confidence 678999999999999999999999999 9999998753 26899999999999999999999999999 89999998
Q ss_pred Cc
Q psy17274 175 KS 176 (184)
Q Consensus 175 ~~ 176 (184)
++
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=4e-19 Score=119.23 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
++.++|||+|||.++++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|++.|||..++| +.|+|.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~ 115 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT-KRLKVQ 115 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT-EECCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEE
Confidence 3678999999999999999999999999 9999999753 37899999999999999999999999999 899999
Q ss_pred ecC
Q psy17274 173 FSK 175 (184)
Q Consensus 173 ~~~ 175 (184)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 103
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.4e-19 Score=114.62 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+++|||+|||..+++++|+++|++|| .|. ++++ ...+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELG-SVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-DTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTT-CCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS-SCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcC-CEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcCCC
Confidence 578999999999999999999999999 775 4443 3568999999999999999999999999999 89999999876
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=2.2e-19 Score=114.47 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
.++|||+|||+++++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-RQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-EECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-cEEEEEEc
Confidence 57899999999999999999999999 9999998753 2789999999999999999 999999999 89999999
Q ss_pred Cccc
Q psy17274 175 KSNI 178 (184)
Q Consensus 175 ~~~~ 178 (184)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 8764
No 105
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=118.14 Aligned_cols=77 Identities=12% Similarity=0.300 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee-EEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCe----
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK-GFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSH---- 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~-~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~---- 168 (184)
++++|||+|||+.+++++|+++|++|| .|. .+++..+ .+++|||+|.+.++|.+|+..|||..+.| +.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~~ 85 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG-ATPAKR 85 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS-CSSCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC-CCccee
Confidence 678999999999999999999999999 898 9998753 24899999999999999999999999999 78
Q ss_pred EEEEecCcc
Q psy17274 169 LRVSFSKSN 177 (184)
Q Consensus 169 l~v~~~~~~ 177 (184)
|+|.|++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999875
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=118.37 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 91 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-RPMHVKMD 91 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-CEEEEEEc
Confidence 678999999999999999999999999 9999998763 26899999999999999999999999999 89999999
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 107
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=3.1e-19 Score=118.36 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++++|||+|||+. +++++|+++|++|| .|..|.+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAG-QTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETT-EECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECCCC
Confidence 5689999999999 99999999999999 9999988 57999999999999999999999999999 89999999865
Q ss_pred c
Q psy17274 178 I 178 (184)
Q Consensus 178 ~ 178 (184)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=2.5e-18 Score=116.33 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 111 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQLV 111 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEEe
Confidence 678999999999999999999999999 9999998753 47899999999999999999999999999 89999999
Q ss_pred Ccccc
Q psy17274 175 KSNIQ 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
.....
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87643
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=9.4e-19 Score=114.98 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC----CceEEEEeCCHHHHHHHHHHhcCeecCCC--CeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQMHNHQLSEQ--SHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~----~~~afV~f~~~~~A~~Ai~~lng~~i~g~--~~l~v~ 172 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+. +++|||+|.+.++|.+|+..|||..+.|. +.|+|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 678999999999999999999999999 99999998632 68999999999999999999999999873 499999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|++....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987654
No 110
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=117.44 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..+.++.. .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~ 91 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLVL 91 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence 567899999999999999999999999 8866555432 36899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98764
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=3e-19 Score=121.19 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+|+++|+++|++|| .|..|.+..+. +++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 98 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISVDW 98 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEE
Confidence 578999999999999999999999999 99999987532 7899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 112
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-19 Score=117.80 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee--------EEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK--------GFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~--------~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
++++|||+|||..+|+++|+++|++|| .|. .|++..+ .+++|||+|.+.++|.+|+..|||..+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCG-VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTS-CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 678999999999999999999999999 888 5888753 26899999999999999999999999999
Q ss_pred CCeEEEEecCcccc
Q psy17274 166 QSHLRVSFSKSNIQ 179 (184)
Q Consensus 166 ~~~l~v~~~~~~~~ 179 (184)
+.|+|.|++....
T Consensus 93 -~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 -SKLKVSLARKKPP 105 (113)
T ss_dssp -EECEEECSSCCCC
T ss_pred -CEEEEEECCCCCC
Confidence 8999999987643
No 113
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=119.16 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..+++.... +|+|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-RALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-SCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEe
Confidence 467899999999999999999999999 99999987532 6899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98763
No 114
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=3.3e-19 Score=121.53 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| ++|+|.|
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-~~l~V~~ 122 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRVDF 122 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence 678999999999999999999999999 9999998752 47899999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++.+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9865
No 115
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=118.02 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCee-cCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQ-LSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~-i~g~~~l~v~ 172 (184)
++.+|||+|||+.+|+++|+++|++ || .|..|++..+ .+++|||+|.+.++|.+|+..|||.. +.| +.|+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-KPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS-SCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC-EeEEEE
Confidence 6788999999999999999999999 99 9999999763 36899999999999999999999999 999 899999
Q ss_pred ecCccc
Q psy17274 173 FSKSNI 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
|++...
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997663
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=115.91 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCc-eeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC-eecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFPKDRKMALLQLDSIEEAITALIQMHN-HQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~-v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng-~~i~g~~~l~v~~~~~ 176 (184)
+.++|||+|||.++|+++|+++|++|| . |..+.+. .+++|||+|.+.++|.+|+..||| ..+.| +.|+|.|+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK-LPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHG-KIMEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT-CCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETT-EECEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC-CceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECC-EEEEEEEccC
Confidence 567899999999999999999999999 7 6666553 689999999999999999999999 99999 8999999987
Q ss_pred ccc
Q psy17274 177 NIQ 179 (184)
Q Consensus 177 ~~~ 179 (184)
+..
T Consensus 83 ~~~ 85 (93)
T 2cqh_A 83 KKL 85 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 117
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=8e-20 Score=117.98 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+|+++|+++|++|| .|..+.++. ..+++|||+|.+.++|.+|++.|||..+.| +.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSC-BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEe
Confidence 567899999999999999999999999 887666654 236899999999999999999999999999 8999999
Q ss_pred cCc
Q psy17274 174 SKS 176 (184)
Q Consensus 174 ~~~ 176 (184)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 875
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.4e-19 Score=116.49 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCC-----CCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSE-----QSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g-----~~~l~v~~ 173 (184)
+..+|||+|||+++|+++|+++|++|| .|..|++..+ ++|||+|.+.++|.+||+.|||..+.| . .|+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~-~i~V~~ 89 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA-YIRVKV 89 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE-EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce-EEEEEe
Confidence 467899999999999999999999999 9999999854 999999999999999999999999998 4 899999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987643
No 119
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-18 Score=112.55 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|| .+|+++|+++|++|| .|..|.+. ..+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G-~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~~a~~~~ 88 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARKQP 88 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTS-CEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETT-EEEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCC-CEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEECCCCC
Confidence 6789999996 899999999999999 99999885 589999999999999999999999999999 899999998764
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-20 Score=116.95 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+.+++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA-QMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-ESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee-EEEeecC
Confidence 678999999999999999999999999 9999998753 26899999999999999999999999999 8999988
Q ss_pred cCc
Q psy17274 174 SKS 176 (184)
Q Consensus 174 ~~~ 176 (184)
+++
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=119.55 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||.++++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 118 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN-KRLKVAL 118 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS-CEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 578999999999999999999999999 9999998753 26899999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
No 122
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=117.29 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+.++|||+|||+++|+++|+++|++|| .|.+|++..+ ++|+|||+|.+.++|..|+. +||..++| +.|+|.++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-r~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-TDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-TTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC-EEEEEEEc
Confidence 567899999999999999999999999 9999998752 47999999999999999999 99999999 89999987
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+..
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 753
No 123
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.79 E-value=6.8e-19 Score=112.39 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec--CCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL--SEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i--~g~~~l~v~~~~~ 176 (184)
+..+|||+|||+++|+++|+++|++|| .|.+|++..+++|+|||+|++.++|.+ |+|..+ .| +.|+|.++++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G-~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g-~~v~v~~a~~ 83 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYG-EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKG-ISVHISNAEP 83 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETT-EEEEEEECC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC-CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCC-EEEEEEEcCC
Confidence 678999999999999999999999999 999999987789999999999999983 666655 48 8999999987
Q ss_pred ccccc
Q psy17274 177 NIQDI 181 (184)
Q Consensus 177 ~~~~~ 181 (184)
+...+
T Consensus 84 k~~~~ 88 (89)
T 3d2w_A 84 KHNKL 88 (89)
T ss_dssp -----
T ss_pred CCcCC
Confidence 75544
No 124
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.5e-19 Score=117.88 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 99 PSPTLHLSNIPA------SVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
.+++|||+|||. .+++++|+++|++|| .|.+|++..+ ++|+|||+|.+.++|.+|+..|||..+.|.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 467899999999 999999999999999 9999998742 3699999999999999999999999999735
Q ss_pred eEEEEecCcc
Q psy17274 168 HLRVSFSKSN 177 (184)
Q Consensus 168 ~l~v~~~~~~ 177 (184)
.|+|.++++.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998764
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=119.93 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
++.++|||+|||+.+++++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|++.|||..++| +.|+|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 138 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVN 138 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-EEEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 3678999999999999999999999999 9999998753 37999999999999999999999999999 899999
Q ss_pred ec
Q psy17274 173 FS 174 (184)
Q Consensus 173 ~~ 174 (184)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 126
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=115.93 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+..||+ .+.| +.|+|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-~~l~V~~ 92 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-RKANVNL 92 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC-EEEEEEE
Confidence 678999999999999999999999999 9999999763 368999999999999999999999 8999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++..
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9764
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.3e-19 Score=116.04 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
+|||+|||.++|+++|+++|++||. .|.++++..+ ++|+|||+|.+.++|.+|++.|||..+.| +.|+|.+++
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-r~i~V~~~~ 81 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVTPSN 81 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-CCCEECCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC-EEEEEEECC
Confidence 6999999999999999999999994 4788888653 26899999999999999999999999999 899999998
Q ss_pred ccccc
Q psy17274 176 SNIQD 180 (184)
Q Consensus 176 ~~~~~ 180 (184)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87543
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=113.58 Aligned_cols=76 Identities=26% Similarity=0.361 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||..+|+++|+++|++|| .| ++... .+++|||+|.+.++|.+|+..|||..+.| +.|+|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 88 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKAT-FI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG-RAIRLELQ 88 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCS-EE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT-EEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-EE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-eEEEEEEc
Confidence 678999999999999999999999999 76 33332 47999999999999999999999999999 89999999
Q ss_pred Ccccc
Q psy17274 175 KSNIQ 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
+.+..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87743
No 129
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=116.08 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCc-eeEEEEcc------CCCceEEEEeCCHHHHHHHHHHhc--CeecCCCCeE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFT-VKGFKFFP------KDRKMALLQLDSIEEAITALIQMH--NHQLSEQSHL 169 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~-v~~v~v~~------~~~~~afV~f~~~~~A~~Ai~~ln--g~~i~g~~~l 169 (184)
+.++|||+|||..+|+++|+++|++|| . |..+.+.. ..+++|||+|.+.++|..|+..|| +..+.| +.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g-~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVT-EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-HQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHS-TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT-BCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc-CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC-CeE
Confidence 578899999999999999999999999 7 99998872 357999999999999999999996 599999 899
Q ss_pred EEEecCccc
Q psy17274 170 RVSFSKSNI 178 (184)
Q Consensus 170 ~v~~~~~~~ 178 (184)
+|.|+++..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998763
No 130
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=118.27 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
..++|||+|||..+++++|+++|++|| .|..|++.. ..+|+|||+|.+.++|.+|+ .|||..+.| +.|+|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-VPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-eEEEEEe
Confidence 357899999999999999999999999 999999974 24689999999999999999 999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++..
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8765
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=112.95 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHHHhcCCceeEEEEcc---CCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-eE
Q psy17274 100 SPTLHLSNIPASV------TEDELKEAFTEKGFTVKGFKFFP---KDRKMALLQLDSIEEAITALIQMHNHQLSEQS-HL 169 (184)
Q Consensus 100 ~~~l~v~nlp~~~------t~~~l~~~F~~~G~~v~~v~v~~---~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~l 169 (184)
+++|||+|||..+ ++++|+++|++|| .|..+.+.+ .++|+|||+|.+.++|.+|+..|||..+.| + +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-QHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS-SSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC-ceeE
Confidence 3689999999999 7799999999999 999998874 247999999999999999999999999999 8 88
Q ss_pred EEE
Q psy17274 170 RVS 172 (184)
Q Consensus 170 ~v~ 172 (184)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 774
No 132
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=111.67 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEE-EccC-CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFK-FFPK-DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~-v~~~-~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
++++|||+|||+.+++++|+++|++|| .|..++ +..+ ..+.|||+|.+.++|.+|+..|||..+.| ++|+|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG-VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN-FTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS-CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcCc
Confidence 467899999999999999999999999 999995 5542 34569999999999999999999999999 8999999987
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=114.42 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
+.++|||+|||..+++++|+++|++|| .|..+......+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g-~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~~~ 92 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDAL-EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTGEKG 92 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEE-EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-EEEEEEECSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC-cEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEcCCCC
Confidence 678999999999999999999999999 887772222347899999999999999999999999999 899999998764
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=114.97 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCce----eEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v----~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+|+++|+++|++|| .| ..+++.. ..+++|||+|.+.++|..|+..|||..+.| +.|+|.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQ-EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG-KILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHH-HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS-CBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEE
Confidence 678999999999999999999999999 87 4555542 347999999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987643
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=113.93 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
+.++|||+|||..+++++|+++|++|| |..|++..+ .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~ 89 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-KRIRVD 89 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC-cEEEEE
Confidence 678999999999999999999999999 888988753 2689999999999999999 999999999 899999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|++.+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987643
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=116.03 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCC------CHHHHHHHHHhcCCceeEEEEcc---CCCceEEEEeCCHHHHHHHHHHhcCeecCCCC-e
Q psy17274 99 PSPTLHLSNIPASV------TEDELKEAFTEKGFTVKGFKFFP---KDRKMALLQLDSIEEAITALIQMHNHQLSEQS-H 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~------t~~~l~~~F~~~G~~v~~v~v~~---~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~-~ 168 (184)
.+++|||+|||..+ |+++|+++|++|| .|..|.+.+ .++|+|||+|.+.++|.+|+..|||..+.| + +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g-~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-QHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS-CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST-TCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC-CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC-Cce
Confidence 46789999999999 7899999999999 999998874 247999999999999999999999999999 8 9
Q ss_pred EEEEecCc
Q psy17274 169 LRVSFSKS 176 (184)
Q Consensus 169 l~v~~~~~ 176 (184)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999874
No 137
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.2e-18 Score=122.44 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||..+|+++|+++|++|| .|..|+|..+ .+++|||+|.+.++|.+|+..|||..|.| +.|+|.|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~ 115 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD-RIIRTDW 115 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 678999999999999999999999999 9999999753 25899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98753
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=113.55 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeec--------CCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQL--------SEQ 166 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i--------~g~ 166 (184)
+.++|||+|||+.+|+++|+++|++|| .|..+++..+ .+++|||+|.+.++|.+|+..|||..+ .+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~- 101 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT- 101 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC-
Confidence 568899999999999999999999999 9999998763 268999999999999999999999999 56
Q ss_pred CeEEEEecCcc
Q psy17274 167 SHLRVSFSKSN 177 (184)
Q Consensus 167 ~~l~v~~~~~~ 177 (184)
++|+|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999999854
No 139
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.5e-18 Score=112.64 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| |..|++..+ .+++|||+|.+.++|.+|+ .|||..+.| +.|+|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~ 89 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-RSLRVDI 89 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT-EECEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC--ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC-eEEEEEE
Confidence 678999999999999999999999997 888988753 2589999999999999999 899999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987644
No 140
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1e-18 Score=118.18 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+ .|||..++| +.|+|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-RTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEE
Confidence 467899999999999999999999999 9999998752 3689999999999999999 899999999 8999999
Q ss_pred cCccccccc
Q psy17274 174 SKSNIQDIR 182 (184)
Q Consensus 174 ~~~~~~~~~ 182 (184)
++.......
T Consensus 112 a~~~~~~~~ 120 (124)
T 2jwn_A 112 KRTNMPGIS 120 (124)
T ss_dssp SSCCCSSCC
T ss_pred CCCCCCCCC
Confidence 998765443
No 141
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=6.9e-19 Score=108.66 Aligned_cols=70 Identities=13% Similarity=0.266 Sum_probs=64.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+|||+|||+++++++|+++|++|| .|..+.+..+ ++|+|||+|.+.++|.+|++ |||..++| ++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN-KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS-CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC-EEEEEEeC
Confidence 489999999999999999999999 8999988753 26899999999999999998 99999999 89999875
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=115.56 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCce-eEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV-KGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v-~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+|+++|+++|++|| .| ..|+|..+ .+|+|||+|.+.++|.+|+.. ||..|.| +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g-r~i~v~~ 90 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG-REAFVHV 90 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSC-CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-EEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCC-CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC-eEEEEEE
Confidence 578999999999999999999999999 88 78888742 479999999999999999997 9999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98653
No 143
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.9e-18 Score=108.86 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|.+|++ ++|..+.| +.|+|.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~i~v~~ 86 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG-RVIDPKK 86 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT-EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC-EEEEEEe
Confidence 678999999999999999999999999 9999998753 26899999999999999996 58899999 8999987
Q ss_pred c
Q psy17274 174 S 174 (184)
Q Consensus 174 ~ 174 (184)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 144
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.4e-18 Score=110.71 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|||+.+++++|+++|++| .|..+++. ..+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-KDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETT-EEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEEcCCCc
Confidence 46789999999999999999999999 47788875 578999999999999999999999999999 899999998763
No 145
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.4e-19 Score=118.61 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|.+++........
T Consensus 22 L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~------------ 89 (115)
T 4f25_A 22 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE------------ 89 (115)
T ss_dssp HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------
T ss_pred HHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccc------------
Confidence 5789999999999999872 5799999999999999999999999999999999998733211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Q psy17274 78 TASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDE 116 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~ 116 (184)
.. ........|||.|||+++|++-
T Consensus 90 ----------~~-----~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 90 ----------LG-----ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------------------------
T ss_pred ----------cc-----cccCCCCceEeCCCCCCccccc
Confidence 00 0001345699999999999763
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=118.89 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCe----ecCCCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--FKFFPK-----DRKMALLQLDSIEEAITALIQMHNH----QLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~----~i~g~~ 167 (184)
++++|||+|||+.+|+++|+++|++|| .|.. |+|+.+ .+|+|||+|.+. +|.+|+..|||. .+.| +
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G-~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-r 98 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYA-VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-K 98 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGC-CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-E
Confidence 678999999999999999999999999 8966 888753 379999999999 999999999999 9999 8
Q ss_pred eEEEEecCcccc
Q psy17274 168 HLRVSFSKSNIQ 179 (184)
Q Consensus 168 ~l~v~~~~~~~~ 179 (184)
.|+|.|++....
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=3.2e-19 Score=114.03 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=66.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
++|||+|||.++++++|+++|++|| .|..+++..+ ++|+|||+|.+.+ |.+|+..|||..++| +.|+|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-RTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-SSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC-eEEEEEEcC
Confidence 4799999999999999999999999 9999998752 3789999999999 999999999999999 899999998
Q ss_pred ccc
Q psy17274 176 SNI 178 (184)
Q Consensus 176 ~~~ 178 (184)
...
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 148
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=121.49 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..++|||+|||..+|+++|+++|++||. .|..|+++.+ .+|+|||+|.+.++|.+||..|||..|+| +.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G-r~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG-EKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEeEEE
Confidence 4678999999999999999999999995 5888988753 26899999999999999999999999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
++..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99765
No 149
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=113.99 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||+.+++++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|+.. ||..+.| +.|+|.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-~~l~V~~ 91 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-RNIDPKP 91 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-EEEBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-EEEEEEE
Confidence 678999999999999999999999999 9999998763 258999999999999999999 9999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98764
No 150
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=112.75 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+..+ |..++| +.|+|.+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g-~~l~V~~ 100 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS-KTIDPKV 100 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT-EEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-EEEEEEE
Confidence 567899999999999999999999999 9999999753 3689999999999999999986 599999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
+..+..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=114.77 Aligned_cols=75 Identities=21% Similarity=0.432 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
+.++|||+|||.++++++|+++|++|| |..|++..+ .+|+|||+|.+.++|.+|+ .|||..++| +.|+|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g-~~l~V~ 93 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-RRIRVD 93 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT-BCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC-eEEEEE
Confidence 678999999999999999999999999 888988753 2689999999999999999 899999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
+++..
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99864
No 152
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=110.97 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
++++|||+|||..+|+++|+++|++|+ .|.-+.-.. ..+++|||+|.+.++|.+|+..|||..|.| +.|+|.|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~~ 91 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-NKVTLDWAKP 91 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEecC
Confidence 678899999999999999999999887 543332111 125899999999999999999999999999 8999999987
Q ss_pred cc
Q psy17274 177 NI 178 (184)
Q Consensus 177 ~~ 178 (184)
+.
T Consensus 92 ~~ 93 (102)
T 2fc8_A 92 KG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 153
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=109.56 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+++++|+++|++|| .|..|++..+. +++|||+|.+.++|.+|+. +++.+.| +.|+|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-~~l~v~~ 89 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-RWCDCKL 89 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-EEEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC-eEEEEEe
Confidence 677899999999999999999999999 99999987632 5899999999999999999 5889999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++...
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98764
No 154
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=2.6e-18 Score=114.82 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe-----EEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH-----LRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~-----l~v~~ 173 (184)
...+|||.|||+++|+++|+++|++|| .|..|.+..+ ++|||+|++.++|.+||+.|||..+.| +. |+|..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRS-HEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCC-TTSCCCBCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECC-cEeeeEEEEecc
Confidence 356899999999999999999999999 9999998754 999999999999999999999999999 78 77776
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
++..
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6544
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9e-18 Score=110.21 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+..+|||+|||+++|+++|+++|++|| .|.. |.+..+ .+|+|||+|.+.++|.+|+.. ||..++| +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g-r~i~v~~ 90 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH-RYIEIFK 90 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCC-EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-SCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC-cEEEEEE
Confidence 567899999999999999999999999 8876 776542 378999999999999999998 9999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8765
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=119.12 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
++++|||+|||+.+|+++|+++|++|| .|.. +.+.. ..+|+|||+|.+.++|.+|+..|||..+.| +.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYV-DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-KP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGC-CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC-cE
Confidence 678999999999999999999999999 7765 33332 457999999999999999999999999999 89
Q ss_pred EEEEecCccc
Q psy17274 169 LRVSFSKSNI 178 (184)
Q Consensus 169 l~v~~~~~~~ 178 (184)
|+|.|+++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 157
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=114.08 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+..+|||+|||.++|+++|+++|++|| .|.. .++. ..+|+|||+|.+.++|.+|++ |||..+.| +.|+|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELF-AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHH-HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-BCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-Ccce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-cEEEEEE
Confidence 567899999999999999999999999 7766 3332 357999999999999999999 99999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
++.+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98753
No 158
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=107.75 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=65.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++|||+|||+++++++|+++|++|| .|..+.+..+ ++|+|||+|.+.++|.+|+..+| ..++| +.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC-EEEEEEec
Confidence 3699999999999999999999999 9999998753 26899999999999999999999 99999 89999986
No 159
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=6.5e-18 Score=113.85 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|+ ++|+++|+++|++|| .|..|.+. ..+++|||+|.+.++|.+|+..|||..+.| +.|+|.|++.+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G-~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-~~l~V~~a~~~~ 112 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARKQP 112 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTC-CCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSS-CBCEEEECCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccC-CEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEeCCCC
Confidence 6789999996 699999999999999 99999886 589999999999999999999999999999 899999998764
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=116.83 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc-----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP-----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+..+|||+|||+++|+++|+++|++|| .|..+.++. ..+|+|||+|.+.++|.+||. |||..|+| +.|+|.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~V~~ 100 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLD-IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN-RFIQVHP 100 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSC-BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT-SCBEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEEE
Confidence 567999999999999999999999999 876633332 136899999999999999999 99999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8765
No 161
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=113.26 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+.++|||+|||..+|+++|+++|++|| .|..|++..+ .+|+|||+|.+.++|.+|+.. ||..+.| +.|+|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-RVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-EEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-EEEEEEE
Confidence 458899999999999999999999999 9999998763 368999999999999999998 9999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
++++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987643
No 162
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=107.39 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
...+|||+|||.++++++|+++|++|+ |..|++..+ .+|+|||+|.+.++|.+|+. |||..++| +.|+|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-r~i~v~~a 84 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPLK--PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG-RYIEVFRE 84 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTSC--CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT-EEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhCC--ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC-cEEEEEEC
Confidence 567899999999999999999999994 778888753 26899999999999999999 99999999 89999999
Q ss_pred Cccc
Q psy17274 175 KSNI 178 (184)
Q Consensus 175 ~~~~ 178 (184)
+.+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=5.1e-18 Score=113.89 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
...+|||+|||+++|+++|+++|++|| . |..|++..+ .+|+|||+|.+.++|.+|++ |||..|+| +.|+|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~V 92 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCT-IHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH-RYIEV 92 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSC-BTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT-EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC-CccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC-eEEEE
Confidence 567899999999999999999999999 7 788888752 36899999999999999999 99999999 89999
Q ss_pred EecCcc
Q psy17274 172 SFSKSN 177 (184)
Q Consensus 172 ~~~~~~ 177 (184)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=119.89 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 98 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
.++++|||+|||+.+++++|+++|++|| .|..|.+..+ .+++|||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-r~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEE
Confidence 3578999999999999999999999999 9999998753 36899999999999999999999999999 8999999
Q ss_pred cCccccc
Q psy17274 174 SKSNIQD 180 (184)
Q Consensus 174 ~~~~~~~ 180 (184)
+......
T Consensus 164 a~~~~~~ 170 (177)
T 2f3j_A 164 VASQIDL 170 (177)
T ss_dssp ESSGGGG
T ss_pred ecCCCCC
Confidence 9877544
No 165
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.1e-18 Score=117.51 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
...+|||+|||+++|+++|+++|++|| . |..|+|..+ ++|+|||+|.+.++|.+|++ |||..++| +.|+|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G-~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-r~i~V 119 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCT-IHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-RYIEV 119 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCC-CSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS-SEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC-CcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC-EEEEE
Confidence 567899999999999999999999999 7 788888752 36899999999999999999 99999999 89999
Q ss_pred EecCcc
Q psy17274 172 SFSKSN 177 (184)
Q Consensus 172 ~~~~~~ 177 (184)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998755
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=108.84 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCC-ceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDR-KMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~-~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
..++|||+|||..+|+++|+++|++|| .|..| +..... .+|||+|.+.++|.+|+. |||..++| +.|+|.++...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g-~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-PVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG-HRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS-CEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT-EECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC-EEEEEEECCcC
Confidence 467899999999999999999999999 89988 332222 299999999999999999 99999999 89999998755
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.3e-17 Score=122.94 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
|.++|||+|||+++|+++|+++|++|| .|.+|+|..+ ++|+|||+|.+.++|.+|+..|||..+.| +.|++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g-~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG-KPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC-ccccccc
Confidence 678999999999999999999999999 9999999753 35899999999999999999999999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8765
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.73 E-value=1.8e-17 Score=123.34 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 98 PPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 98 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
+++++|||+|||+ ++++++|+++|++|| .|..|++..+.+++|||+|.+.++|.+|++.|||..+.| +.|+|.|++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS-SBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEecC
Confidence 3788999999999 999999999999999 999999997668999999999999999999999999999 8999999986
Q ss_pred c
Q psy17274 177 N 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=3.6e-17 Score=115.32 Aligned_cols=79 Identities=15% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-----CceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-----~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+++|+++|+++|++|| .|..+++..+. +|+|||+|.+.++|..|++.|||..+.| +.|+|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-KTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC-ceEEEEe
Confidence 367899999999999999999999999 99999997632 4899999999999999999999999999 8999999
Q ss_pred cCcccc
Q psy17274 174 SKSNIQ 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
+++...
T Consensus 79 ~~~~~~ 84 (167)
T 1fxl_A 79 ARPSSA 84 (167)
T ss_dssp CCCCCG
T ss_pred cCCCcc
Confidence 986643
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-18 Score=108.46 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCccc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~~ 178 (184)
++++|||+|||.++|+++|+++|++|| .|..+++..+.+++|||+|.+.++|.+|+.. +..+.| +.|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g-~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG-DVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKG-ISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS-CCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETT-EEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCC-EEEEEEecCCCC
Confidence 578999999999999999999999999 9999999876799999999999999764221 344588 899999998764
Q ss_pred c
Q psy17274 179 Q 179 (184)
Q Consensus 179 ~ 179 (184)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=2.5e-17 Score=116.41 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+++++++|+++|++|| .|.++++..+ .+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-KRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC-cEEEEEe
Confidence 578999999999999999999999999 9999998763 25899999999999999999999999999 8999999
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
+++..
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98654
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1.9e-17 Score=104.95 Aligned_cols=72 Identities=22% Similarity=0.447 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CC------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEK----GF------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
+.++|||+|||+++++++|+++|++| |. .|.++++. .++++|||+|.+.++|.+|+ .|||..+.| +.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g-~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETT-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECC-eE
Confidence 57899999999999999999999999 62 58888877 47999999999999999999 999999999 89
Q ss_pred EEEEe
Q psy17274 169 LRVSF 173 (184)
Q Consensus 169 l~v~~ 173 (184)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99973
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=3.3e-17 Score=107.60 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHhcCCceeEEEEccC------CCceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 99 PSPTLHLSNIPA-----SVTEDELKEAFTEKGFTVKGFKFFPK------DRKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~-----~~t~~~l~~~F~~~G~~v~~v~v~~~------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
|+++|+|.||.. .-++++|+++|++|| .|.+|.|... ++|+|||+|.+.++|.+|+..|||+.+.| |
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-r 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-R 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-E
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-c
Confidence 789999999963 236899999999999 9999998742 37999999999999999999999999999 9
Q ss_pred eEEEEecCcc
Q psy17274 168 HLRVSFSKSN 177 (184)
Q Consensus 168 ~l~v~~~~~~ 177 (184)
.|+|.|+...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998753
No 174
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=1.2e-17 Score=124.47 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeec------
Q psy17274 99 PSPTLHLSNIPASV---------TEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQL------ 163 (184)
Q Consensus 99 ~~~~l~v~nlp~~~---------t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i------ 163 (184)
++++|||+|||..+ ++++|+++|++|| .|.+|+|+. ++|+|||+|.+.++|..|++.|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-DIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-CEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccC-CEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 67899999999998 7999999999999 999999985 799999999999999999999999999
Q ss_pred ------CCCCeEEEEecCccc
Q psy17274 164 ------SEQSHLRVSFSKSNI 178 (184)
Q Consensus 164 ------~g~~~l~v~~~~~~~ 178 (184)
.| +.|.|.|++...
T Consensus 211 e~~~~~~g-r~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREG-TGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGS-CCCEEEECC---
T ss_pred cccccCCC-CEEEEEEccCCC
Confidence 88 899999998653
No 175
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-18 Score=111.55 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCc---eeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFT---VKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRV 171 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~---v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v 171 (184)
...+|||+|||+++|+++|+++|++|| . |..|++..+ .+|+|||+|.+.++|.+|+. |||..++| +.|+|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g-~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i~V 86 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ-RYVEV 86 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSC-BTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS-SCCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC-CcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC-eEEEE
Confidence 567899999999999999999999999 7 888988752 47899999999999999999 99999999 89999
Q ss_pred EecCcc
Q psy17274 172 SFSKSN 177 (184)
Q Consensus 172 ~~~~~~ 177 (184)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998764
No 176
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-18 Score=110.48 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+..+|||.|||+++|+++|+++|++|| .+ .|+|..+ .+++|||+|.+.++|.+||+ +|+..|+| +.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i~V~~~ 89 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH-RYVELFLN 89 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS-SCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEEEC
Confidence 567899999999999999999999999 55 7888653 26899999999999999995 79999999 89999998
Q ss_pred Cccc
Q psy17274 175 KSNI 178 (184)
Q Consensus 175 ~~~~ 178 (184)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 177
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=5e-18 Score=104.74 Aligned_cols=70 Identities=13% Similarity=0.284 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+|||+|||+.+++++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|++. +|..+.| +.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL-SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT-BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC-EEEEEEEC
Confidence 489999999999999999999999 8999988642 378999999999999999995 9999999 89999875
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=2.7e-17 Score=111.43 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=65.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCe-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDS-ALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|++||.|.+|++..+++|+ |||+|.+.++|+.|++.|||..++| ++|+|+|++.....+..... ..+||
T Consensus 45 L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~~----~srDy 120 (130)
T 3zzy_A 45 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNND----KSRDY 120 (130)
T ss_dssp HHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCSS----SEEET
T ss_pred HHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecCC----CcccC
Confidence 67999999999999988877787 9999999999999999999999998 99999999988776654432 34566
Q ss_pred CCCC
Q psy17274 78 TASP 81 (184)
Q Consensus 78 ~~~~ 81 (184)
+++.
T Consensus 121 t~~~ 124 (130)
T 3zzy_A 121 TRPD 124 (130)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 6543
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-19 Score=118.38 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeE--------EEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKG--------FKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~--------v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
++++|||+|||..+++++|+++|++|| .|.. |++..+ .+++|||+|.+.++|.+|+..|||..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 678899999999999999999999999 8887 777642 36899999999999999999999999999
Q ss_pred CCeEEEEecCccc
Q psy17274 166 QSHLRVSFSKSNI 178 (184)
Q Consensus 166 ~~~l~v~~~~~~~ 178 (184)
+.|+|.|++++.
T Consensus 85 -~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 -NPIKVSFATRRA 96 (116)
Confidence 899999998764
No 180
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.6e-17 Score=123.68 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGF-TVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..++|||+|||..+|+++|+++|++||. .|..|+|+.+ ++++|||+|.+.++|.+||+.|||+.|.| +.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G-r~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT-BCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC-EEeEEE
Confidence 4568999999999999999999999995 5889988753 36899999999999999999999999999 899999
Q ss_pred ecCcc
Q psy17274 173 FSKSN 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|++.+
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98765
No 181
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=106.07 Aligned_cols=77 Identities=10% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCEEEEeCCCCCCC-----------HHHHHHHHHhcCCceeEEEEcc-CCCceEEEEeCCHHHHHHHHHHhcCeecCCC
Q psy17274 99 PSPTLHLSNIPASVT-----------EDELKEAFTEKGFTVKGFKFFP-KDRKMALLQLDSIEEAITALIQMHNHQLSEQ 166 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t-----------~~~l~~~F~~~G~~v~~v~v~~-~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~ 166 (184)
++++|+|.||....+ +++|+++|++|| .|..|.|.. ..+|+|||+|.+.++|.+|+..|||+.+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 91 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG-QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG- 91 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS-CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC-CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 789999999954332 689999999999 999997643 347999999999999999999999999999
Q ss_pred CeEEEEecCcc
Q psy17274 167 SHLRVSFSKSN 177 (184)
Q Consensus 167 ~~l~v~~~~~~ 177 (184)
++|+|.|+...
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 89999998764
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.71 E-value=3e-17 Score=119.26 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
.+++|||+|||+ .+++++|+++|++|| .|..|++..+.+|+|||+|.+.++|.+|+..|||..+.| +.|+|.|++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTC-CCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSS-CCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecC-eEEEEEEecCC
Confidence 357899999999 999999999999999 899999987668999999999999999999999999999 89999999865
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.5e-17 Score=113.87 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=69.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCc
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~ 176 (184)
++|||+|||+++|+++|+++|++|| .|.++++..+ .+|+|||+|.+.++|.+|+..|||..+.| +.|+|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-NIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-CeeEEEEcCC
Confidence 4799999999999999999999999 9999998753 35899999999999999999999999999 8999999976
Q ss_pred cc
Q psy17274 177 NI 178 (184)
Q Consensus 177 ~~ 178 (184)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 184
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=106.45 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc----CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~----~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
..+|||+|||+++|+++|+++|++|+ |..|+|.. +.+|+|||+|.+.++|.+|+ .|||..|+| |.|+|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-r~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLR--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-RYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSC--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT-EEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCC--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEECC
Confidence 56899999999999999999999995 67888874 24799999999999999999 699999999 899998876
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 185
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.7e-17 Score=108.41 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||..+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|.+|+. ||..++| +.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG-KKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT-EECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC-EEEEEEEC
Confidence 467899999999999999999999999 9999998763 36899999999999999999 9999999 89999998
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 754
No 186
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.69 E-value=1.1e-16 Score=105.03 Aligned_cols=77 Identities=13% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 99 PSPTLHLSNI--PASVT--------EDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 99 ~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
|+++|.|.|+ |..+. +++|+++|++|| .|.+|.|..+ ++|+|||+|.+.++|.+|+..|||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G-~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG-LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS-CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC-CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 7999999998 44443 379999999999 9999998742 3699999999999999999999999
Q ss_pred ecCCCCeEEEEecCcc
Q psy17274 162 QLSEQSHLRVSFSKSN 177 (184)
Q Consensus 162 ~i~g~~~l~v~~~~~~ 177 (184)
.++| |+|+|+|....
T Consensus 83 ~f~G-R~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFAN-RVVVTKYCDPD 97 (105)
T ss_dssp EETT-EECEEEEECHH
T ss_pred EeCC-CEEEEEEeCHH
Confidence 9999 99999998643
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=1.9e-16 Score=121.08 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELK----EAFTEKGFTVKGFKFFP--KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
++++|||+|||.++|+++|+ ++|++|| .|..|++.. +.+|+|||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G-~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 85 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFG-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRIQ 85 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccC-CeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC-cEEEEE
Confidence 78899999999999999977 9999999 999999875 347999999999999999999999999999 899999
Q ss_pred ecCccc
Q psy17274 173 FSKSNI 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
|++...
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 998754
No 188
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=110.34 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCce----eEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v----~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
...+|||+|||+++|+++|+++|++|| .| ..|.|..+ .+|+|||+|.+.++|.+|++. |++.|+| |.|+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g-~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g-R~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHC-PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK-RYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTS-CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS-CEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhC-CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC-eEEE
Confidence 467899999999999999999999999 64 67887642 368999999999999999996 9999999 8999
Q ss_pred EEecCcc
Q psy17274 171 VSFSKSN 177 (184)
Q Consensus 171 v~~~~~~ 177 (184)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987654
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=2.2e-16 Score=115.95 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||.++|+++|+++|++|| .|..|++..+ .+++|||+|.+.++|.+|++.|||..+.| +.|+|.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-RNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC--CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC-eeEEEec
Confidence 467899999999999999999999999 9999999753 47999999999999999999999999999 8999998
Q ss_pred cCccc
Q psy17274 174 SKSNI 178 (184)
Q Consensus 174 ~~~~~ 178 (184)
+....
T Consensus 105 ~~~~~ 109 (216)
T 2qfj_A 105 PSNIG 109 (216)
T ss_dssp CSCCG
T ss_pred CCCcc
Confidence 87653
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=5e-16 Score=117.75 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecCcc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~~~ 177 (184)
++++|||+|||+++|+++|+++|++|| .|..|.+. .++|+|||+|.+.++|..|+..|||..+.| +.|+|.|+...
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~~~ 96 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYG-EPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKS-RPLRIRFATHG 96 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGC-CCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECC-ceeEeeecccC
Confidence 567899999999999999999999999 99999887 479999999999999999999999999999 89999999764
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.3e-16 Score=104.97 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=62.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCe-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDS-ALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|++||.|.+|+++.+ .|+ |||+|.+.++|..|++.|||..++| ++|+|++++...+.+.... ...+||
T Consensus 42 L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v~~n~----~~srDy 116 (124)
T 2e5i_A 42 LYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRND----NDSWDY 116 (124)
T ss_dssp HHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCCSSCS----SSEEES
T ss_pred HHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcceeecCC----CCCCCC
Confidence 6789999999999998775 595 9999999999999999999999988 6999999997766544332 245566
Q ss_pred CCCC
Q psy17274 78 TASP 81 (184)
Q Consensus 78 ~~~~ 81 (184)
+.+.
T Consensus 117 t~~~ 120 (124)
T 2e5i_A 117 TKPY 120 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 192
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.2e-16 Score=108.03 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcee-EEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVK-GFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~-~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
+..+|||+|||+++|+++|+++|++|+ .+. .|+|..+ .+|+|||+|.+.++|.+|++. ++..|+| |.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g-R~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH-RYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT-BCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC-EEEEEEE
Confidence 467899999999999999999999997 442 7887642 479999999999999999985 8899999 8999998
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 193
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.1e-17 Score=112.28 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
..++|||.|||+++|+++|+++|++|| .+ .|+|..+ .+|+|||+|++.++|.+|| .+|+..++| +.|+|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-R~i~V~~a 120 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PV-RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH-RYIELFLN 120 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CS-EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-CCCCCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC-EEEEEEEC
Confidence 467899999999999999999999999 44 7887642 3789999999999999999 799999999 89999998
Q ss_pred Cccc
Q psy17274 175 KSNI 178 (184)
Q Consensus 175 ~~~~ 178 (184)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 194
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=5.7e-16 Score=112.07 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+++|+++|+++|++|| .|..|++..+ ++|+|||+|.+.++|.+|+.. +|..+.| +.|+|.+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-~~l~v~~ 88 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-RVVEPKR 88 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC-EEeeeec
Confidence 578999999999999999999999999 9999998763 258999999999999999986 9999999 8999999
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8765
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.5e-16 Score=109.69 Aligned_cols=78 Identities=15% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecC---CCCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLS---EQSH 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~---g~~~ 168 (184)
.+++|||+|||+++|+++|+++|++|| .|.++++... ++|+|||+|.+.++|.+|++.|||..+. + +.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~-~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH-HP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS-SC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc-cc
Confidence 467899999999999999999999999 9999998752 3579999999999999999999998886 4 68
Q ss_pred EEEEecCccc
Q psy17274 169 LRVSFSKSNI 178 (184)
Q Consensus 169 l~v~~~~~~~ 178 (184)
+.+.++....
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888877553
No 196
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.4e-16 Score=98.89 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.+||++||+|.++++.. ++|||||+|.++++|.+|++.|||..+.|++|+|+++.
T Consensus 24 L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 24 LRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578999999999999865 78999999999999999999999999999999999885
No 197
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5e-16 Score=109.00 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=62.9
Q ss_pred ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecC--cEEEEEEccCccccCCCCCCCCCCccccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFG--KQMRVMISKHQAVQLPKEGQPDAGLTKDY 77 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~ 77 (184)
|+++|++||+|.+|++..+ ++|+|||+|.+.++|+.|++.|||..++| ++|+|+|++.....+.... ...+||
T Consensus 63 L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~nn----~rsrDy 138 (164)
T 1sjr_A 63 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNN----DKSRDY 138 (164)
T ss_dssp HHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCCCS----SSEEES
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccccC----CCCccc
Confidence 5789999999999998763 57899999999999999999999999976 9999999997766544322 244566
Q ss_pred CCCC
Q psy17274 78 TASP 81 (184)
Q Consensus 78 ~~~~ 81 (184)
+.+.
T Consensus 139 t~p~ 142 (164)
T 1sjr_A 139 TRPD 142 (164)
T ss_dssp SCSC
T ss_pred cCCC
Confidence 5543
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=103.22 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEcc--------CCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP--------KDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLR 170 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~--------~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~ 170 (184)
++++|||+|||+.+|+++|+++|++|| .|. +.++. ..+|+|||+|++.++|.+|++.|+ .++| +.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G-~~~~ 81 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG-PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDG-KLYL 81 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC-CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETT-EEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCC-cEEE
Confidence 467899999999999999999999999 888 66653 237899999999999999999993 2555 5555
Q ss_pred EEec
Q psy17274 171 VSFS 174 (184)
Q Consensus 171 v~~~ 174 (184)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5433
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=9.1e-16 Score=102.65 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCC--CC---CHHHHHHHHHhcCCceeEEEEccCC---------CceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 99 PSPTLHLSNIPA--SV---TEDELKEAFTEKGFTVKGFKFFPKD---------RKMALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 99 ~~~~l~v~nlp~--~~---t~~~l~~~F~~~G~~v~~v~v~~~~---------~~~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
|+++|+|.|+-. .+ -++||++.|++|| .|.+|.|..+. +|+|||+|.+.++|.+|+..|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G-~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC-CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 789999999842 22 2789999999999 99999987521 389999999999999999999999999
Q ss_pred CCCeEEEEecCc
Q psy17274 165 EQSHLRVSFSKS 176 (184)
Q Consensus 165 g~~~l~v~~~~~ 176 (184)
| |+|+|+|...
T Consensus 98 G-R~i~v~~~~~ 108 (118)
T 3ue2_A 98 G-RKVVAEVYDQ 108 (118)
T ss_dssp T-EECEEEEECH
T ss_pred C-cEEEEEEcCh
Confidence 9 9999999864
No 200
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.63 E-value=2e-15 Score=100.30 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCCCC----------HHHHHHHHHhcCCceeEEEEccCC-CceEEEEeCCHHHHHHHHHHhcCeecCCCC
Q psy17274 99 PSPTLHLSNIPASVT----------EDELKEAFTEKGFTVKGFKFFPKD-RKMALLQLDSIEEAITALIQMHNHQLSEQS 167 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~~v~~v~v~~~~-~~~afV~f~~~~~A~~Ai~~lng~~i~g~~ 167 (184)
|+++|.|.|+-..-. ++||++.|++|| .|.+|.|.... +|+|||+|.+.++|.+|+..|||+.++| |
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG-~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-R 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG-GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-K 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT-CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT-E
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC-CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-E
Confidence 789999999843221 568899999999 99999987543 7999999999999999999999999999 9
Q ss_pred eEEEEecCcc
Q psy17274 168 HLRVSFSKSN 177 (184)
Q Consensus 168 ~l~v~~~~~~ 177 (184)
.|+|+|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998643
No 201
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=102.47 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=55.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||+|.+|+++..++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 17 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 17 LERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 568999999999999887678999999999999999999999999999999999998543
No 202
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=4.3e-16 Score=101.23 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=53.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||+|.+|++++ .++|||||+|.+.++|++|++.|||..+.|++|+|+|+++
T Consensus 36 L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 578999999999999986 2468999999999999999999999999999999999973
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.62 E-value=1.4e-15 Score=118.88 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=66.9
Q ss_pred CCCEEEEeC--CCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecC---CCC--eEEE
Q psy17274 99 PSPTLHLSN--IPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLS---EQS--HLRV 171 (184)
Q Consensus 99 ~~~~l~v~n--lp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~---g~~--~l~v 171 (184)
|+++|||+| |+..+|+++|+++|++|| .|.+|.+. .+||+|||+|++.++|.+|++.|||..+. | + .|.+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G-~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g-~~~~ly~ 93 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG-QKITLYL 93 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTS-CEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTS-CEEECEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcC-CeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccC-CceEEEE
Confidence 789999999 578999999999999999 99999776 48999999999999999999999999984 3 3 6889
Q ss_pred EecC
Q psy17274 172 SFSK 175 (184)
Q Consensus 172 ~~~~ 175 (184)
+|..
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 9985
No 204
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.3e-15 Score=110.54 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
+.++|||+|||+.+|+++|+++|++|| .|..|++... .+|+|||+|++.++|.+|+..++ ..++| +.|+|.++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-r~l~V~~~ 184 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE-TDLLILFK 184 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT-EECEEEET
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC-EEEEEEEh
Confidence 357899999999999999999999999 9999998752 36999999999999999998765 58999 89999998
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+.-
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 754
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.9e-15 Score=107.16 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CC------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEK----GF------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
++++|||+|||+++|+++|+++|++| |. .|..+.+. .++|+|||+|.+.++|.+|+ .|||..+.| ++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~g-~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEETT-EE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEecC-ce
Confidence 57899999999999999999999999 52 46666665 47999999999999999999 899999999 89
Q ss_pred EEEEecCcc
Q psy17274 169 LRVSFSKSN 177 (184)
Q Consensus 169 l~v~~~~~~ 177 (184)
|+|.+++..
T Consensus 80 i~v~~~~~~ 88 (172)
T 2g4b_A 80 LKIRRPHDY 88 (172)
T ss_dssp CEEECCSSC
T ss_pred eeecCCccc
Confidence 999998764
No 206
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=99.60 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=53.5
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLR--VFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|++++ .+|+|||+|.+.++|..|++.|+|.. +.|++|+|.||+.+.
T Consensus 38 L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 38 LVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 578999999999999875 67999999999999999999999986 679999999998654
No 207
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=96.26 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=64.2
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 100 SPTLHLSNIP-------ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 100 ~~~l~v~nlp-------~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
.+.|.|.-.. +.+++++|+++|++|| .|..|.+....+|+|||+|++.++|..|+..+++ +.| ++|+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G-~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g-~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG-EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVD-NPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS-CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSS-SBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcC-CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCC-CeEEEE
Confidence 3456665433 5689999999999999 9999999877899999999999999999998665 578 899999
Q ss_pred ecCcccc
Q psy17274 173 FSKSNIQ 179 (184)
Q Consensus 173 ~~~~~~~ 179 (184)
|++.+..
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9987754
No 208
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=102.10 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=65.2
Q ss_pred CEEEEeCC----CCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCC----HHH----HHHHHH--HhcCe
Q psy17274 101 PTLHLSNI----PASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDS----IEE----AITALI--QMHNH 161 (184)
Q Consensus 101 ~~l~v~nl----p~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~----~~~----A~~Ai~--~lng~ 161 (184)
..|+|+|| |+++++++|+++|++|| +|.++.++.+ ++|+|||+|.+ +++ |.+|+. .|||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 46999999 99999999999999999 9999998752 36999999996 444 889999 89999
Q ss_pred ecCCCCeEEEEecCcc
Q psy17274 162 QLSEQSHLRVSFSKSN 177 (184)
Q Consensus 162 ~i~g~~~l~v~~~~~~ 177 (184)
.|+| ++|+|.+-+..
T Consensus 82 ~I~G-r~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMG-FKFEVILNKHS 96 (136)
T ss_dssp EETT-EEEEEEECCTT
T ss_pred eecC-cEEEEEECccc
Confidence 9999 89999987655
No 209
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=4.1e-15 Score=107.67 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC----C------ceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKG----F------TVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G----~------~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
.+++|||+|||+++|+++|+++|++|| . .|..+.+. .++|+|||+|.+.++|.+|+ .|||..+.| +.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g-~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-QS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETT-EE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC-ce
Confidence 467999999999999999999999994 1 35556554 57999999999999999999 899999999 89
Q ss_pred EEEEecCcc
Q psy17274 169 LRVSFSKSN 177 (184)
Q Consensus 169 l~v~~~~~~ 177 (184)
|+|.+++..
T Consensus 80 i~v~~~~~~ 88 (198)
T 2yh0_A 80 LKIRRPHDY 88 (198)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998764
No 210
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.7e-15 Score=106.90 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-----DRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~ 173 (184)
++++|||+|||+++|+++|+++|++|| .|.+|++..+ ++|+|||+|.+.++|.+|+.. +..+.| +.|+|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG-KVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT-EECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC-eEccccc
Confidence 567999999999999999999999999 9999998753 368999999999999999994 678999 8999998
Q ss_pred cCcc
Q psy17274 174 SKSN 177 (184)
Q Consensus 174 ~~~~ 177 (184)
+...
T Consensus 78 ~~~~ 81 (167)
T 2cjk_A 78 AIPR 81 (167)
T ss_dssp CCCH
T ss_pred ccch
Confidence 8764
No 211
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=1e-15 Score=108.99 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEc----cCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEec
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFF----PKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFS 174 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~----~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~ 174 (184)
++++|||+|||..+|+++|+++|++|| .+..+.+. ..++|+|||+|.+.++|.+|++ |||..+.| +.|+|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g-~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~v~~~ 88 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLEKP 88 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHH-HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT-EEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC-eEEEEecC
Confidence 578999999999999999999999999 65442221 1468999999999999999995 99999999 89999999
Q ss_pred Ccc
Q psy17274 175 KSN 177 (184)
Q Consensus 175 ~~~ 177 (184)
+..
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 864
No 212
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=103.39 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=54.7
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|+++|++||+|.+|.+.. .++|||||+|.+.++|..|++.|||..+.|++|+|.|++...
T Consensus 50 L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 50 LYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 467999999999998876 478999999999999999999999999999999999998543
No 213
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=9.5e-16 Score=102.14 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=71.5
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccccCCCCCCCCCCcccccC
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGLTKDYT 78 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
|.++|++||.|.+|.++. .++|+|||+|.+.++|..|++.|||..+.|++|.|.+++.....
T Consensus 25 l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~---------------- 88 (115)
T 3lqv_A 25 MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF---------------- 88 (115)
T ss_dssp HHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------
T ss_pred HHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------
Confidence 568999999999999876 46799999999999999999999999999999999998732210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Q psy17274 79 ASPLHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGF 126 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~ 126 (184)
.+++...++++|..+|++||.
T Consensus 89 ---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 ---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 246677889999999999993
No 214
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=7.5e-16 Score=100.95 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=58.5
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCceeEEEEccC----CCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 105 LSNIPASVTEDELKEAF------------TEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 105 v~nlp~~~t~~~l~~~F------------~~~G~~v~~v~v~~~----~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
+.|||..+++++|+++| ++|| .|.+|.|..+ ++|+|||+|.+.++|.+|+..|||+.++| |+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G-~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G-r~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG-QP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT-EE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC-EE
Confidence 34566666777776666 9999 9999999863 37999999999999999999999999999 89
Q ss_pred EEEEecC
Q psy17274 169 LRVSFSK 175 (184)
Q Consensus 169 l~v~~~~ 175 (184)
|+|.|+.
T Consensus 98 i~v~~sp 104 (104)
T 1jmt_A 98 IHAELSP 104 (104)
T ss_dssp CCEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 215
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=98.67 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||+|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|.|+++...
T Consensus 23 L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 23 LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 568999999999999986 35799999999999999999999999999999999998643
No 216
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=94.84 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred ChhhhccCCCeeEEEEeeC--CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN--KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|+++|++||+|.+|+++.. .+|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3589999999999999862 3899999999999999999999999999999999999743
No 217
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.6e-15 Score=93.26 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=49.9
Q ss_pred ChhhhccC-CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVY-GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~y-G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|+++|++| |+|.+|. .|+|||+|.+.++|++|++.|||..++||+|+|.|++...
T Consensus 30 L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 30 LRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 57899999 5999982 3999999999999999999999999999999999998543
No 218
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=95.59 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=51.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|++++ .+|||||+|.+.++|..|++.||+. .+.|++|+|.+++.
T Consensus 33 L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 33 LLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred HHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 568999999999999876 5699999999999999999999875 59999999999984
No 219
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=95.19 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL--RVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|.+++ .+|||||+|.+.++|..|++.|++. .+.|++|+|+|++.+..
T Consensus 32 L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 32 LVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 568999999999999876 5899999999999999999998765 48999999999986554
No 220
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.8e-15 Score=97.30 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=53.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|++++ .+|||||+|.+.++|..|++.|++ ..+.|++|+|.+++.+..
T Consensus 33 L~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 33 VISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp HHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred HHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 568999999999999886 589999999999999999998864 789999999999985544
No 221
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=1.2e-14 Score=95.30 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=53.1
Q ss_pred ChhhhccCCCeeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||+|.+|.++. .++|+|||+|.++++|.+|++.|||..|.||+|.|.++..
T Consensus 30 l~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 30 TKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 467899999999999986 2479999999999999999999999999999999999864
No 222
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-14 Score=92.25 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh--CCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM--DKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|.+++ .+|||||+|.+.++|..|++.| ++..+.|++|.|.|++....
T Consensus 32 L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 32 VIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp HHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred HHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 568999999999998775 5899999999999999999977 46789999999999986554
No 223
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1e-14 Score=91.79 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus 24 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 24 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5689999999999998762 58999999999999999999999999999999999875
No 224
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=93.72 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=54.3
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 32 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 32 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 5689999999999999873 46899999999999999999999999999999999998543
No 225
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=96.37 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=53.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee-----cCcEEEEEEccCcccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV-----FGKQMRVMISKHQAVQ 62 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-----~g~~l~v~~s~~~~~~ 62 (184)
|.++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+ .|++|.|.|++.-...
T Consensus 44 L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 44 LLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp HHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred HHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 568999999999998754 689999999999999999999999998 6899999999854443
No 226
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=92.85 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=54.8
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 32 ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred HHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 578999999999999987 367999999999999999999999999999999999998543
No 227
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.9e-14 Score=91.55 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=55.2
Q ss_pred ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus 32 l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 32 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp HHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 5689999999999999873 489999999999999999999999999999999999985443
No 228
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=91.49 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 25 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 25 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 568999999999999876 257999999999999999999999999999999999998543
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=95.70 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=52.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|++++ ++|||||+|.+.++|..|++.|++ ..+.|++|+|.+++...
T Consensus 43 L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 43 VLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp HHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred HHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 568999999999999875 689999999999999999998865 56899999999997443
No 230
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=91.62 Aligned_cols=57 Identities=21% Similarity=0.466 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||+|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 33 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 33 LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 5689999999999998862 57999999999999999999999999999999999975
No 231
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.6e-14 Score=90.73 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||+|.+|.+. .++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 30 l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 30 LRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred HHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 56899999999999975 578999999999999999999999999999999999987443
No 232
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.2e-14 Score=89.81 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=53.3
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||+|.+|+++.. ++|+|||+|.+.++|+.|++.|||..+.|++|+|++++.
T Consensus 18 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 18 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999998863 379999999999999999999999999999999999874
No 233
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=90.65 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=53.0
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|+.|++.|||..+.|++|+|++++.
T Consensus 23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 23 IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 4689999999999999873 478999999999999999999999999999999999874
No 234
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=1.9e-14 Score=94.37 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeC-------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+|++. ++|+|||+|.++++|.+|++.|||..|.||+|.|.++..
T Consensus 32 l~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 32 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4678999999999998862 479999999999999999999999999999999998753
No 235
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=1.8e-14 Score=95.68 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=53.3
Q ss_pred ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.+.|++||.|.+|.+.+. .+|+|||+|.+.++|.+|++.|||..|.||+|.|.|+..
T Consensus 34 l~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 34 VIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 4678999999999998774 589999999999999999999999999999999999863
No 236
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=92.14 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=51.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||+|.+|.++..++|||||+|.+.++|..|++.+++ +.|++|+|.|++..
T Consensus 34 L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 34 LLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp HHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred HHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 5689999999999999888899999999999999999998655 67999999998744
No 237
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=1.3e-14 Score=94.36 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=53.1
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecC-cEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFG-KQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~v~~s~~ 58 (184)
|.++|++||+|.+|+++. .++|||||+|.+.++|++|++.|||..+.| ++|+|.++..
T Consensus 29 L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 29 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 468999999999999886 357999999999999999999999999999 9999999863
No 238
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.1e-14 Score=89.75 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=54.0
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 22 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 22 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 5689999999999999873 5799999999999999999999999999999999999743
No 239
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=3.1e-14 Score=91.76 Aligned_cols=61 Identities=15% Similarity=0.337 Sum_probs=55.0
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus 19 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 19 ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 5689999999999998863 479999999999999999999999999999999999985543
No 240
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=95.93 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=53.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDK--LRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++. .+|||||+|.+.++|..|++.|++ ..+.|++|+|.+++....
T Consensus 48 L~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 48 VISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred HHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 568999999999999886 479999999999999999999984 689999999999986554
No 241
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=1.5e-14 Score=94.73 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=50.7
Q ss_pred hhhh-ccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 2 FSLT-GVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 2 ~~lF-~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
.+.| ++||+|.+|++++. ++|+|||+|.++++|.+|++.|||..+.|++|.|+|+
T Consensus 44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4567 99999999999873 4899999999999999999999999999999999986
No 242
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=93.38 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=52.5
Q ss_pred hhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 2 FSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
.++|++||+|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 36 ~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 36 PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTK 101 (111)
T ss_dssp TTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCC
T ss_pred HHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccc
Confidence 489999999999999862 2389999999999999999999999999999999998743
No 243
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=92.49 Aligned_cols=60 Identities=20% Similarity=0.401 Sum_probs=54.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 29 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 5689999999999998763 68999999999999999999999999999999999998544
No 244
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=7.9e-14 Score=93.03 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=54.7
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 24 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 24 LKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 4689999999999999873 57999999999999999999999999999999999998544
No 245
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.1e-14 Score=88.97 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus 25 l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 25 IRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp HHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred HHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 56899999999999986 6999999999999999999999999999999999987443
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-14 Score=92.37 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 39 l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 39 IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp HHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 578999999999999876 35799999999999999999999999999999999998743
No 247
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=94.05 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 46 l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 46 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 568999999999999886 35899999999999999999999999999999999998743
No 248
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=91.01 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=54.2
Q ss_pred ChhhhccCCCeeEE-EEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRV-KILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v-~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+| +++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 22 l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 22 LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 56899999999999 88763 57999999999999999999999999999999999997443
No 249
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=2.1e-14 Score=92.64 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=53.8
Q ss_pred ChhhhccCCCeeEEEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|+++|++||.|.+|.+.. .++|+|||+|.+.++|..|++.|||..+.|++|.|++++..
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 29 LHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 458999999999999875 46799999999999999999999999999999999999844
No 250
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=93.26 Aligned_cols=58 Identities=17% Similarity=0.357 Sum_probs=51.3
Q ss_pred ChhhhccCCC--eeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCc----eecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGD--VLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKL----RVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~--V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~l~v~~s~~ 58 (184)
|.++|++||. |.+|++++ .++|||||+|.+.++|++|++.|||. .+.|++|.|+|++.
T Consensus 26 L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 26 IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 5689999995 67898876 36899999999999999999999997 47899999999974
No 251
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=4.4e-14 Score=92.45 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=54.6
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecC---cEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFG---KQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.| ++|.|.+++....
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 32 VLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp HHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 5689999999999999873 37999999999999999999999999998 9999999985443
No 252
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=93.69 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=54.0
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.+.. ++|+|||+|.+.++|+.|++.|||..+.|++|.|+|++...
T Consensus 27 L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 27 IQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 568999999999998764 78999999999999999999999999999999999997543
No 253
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=91.19 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred ChhhhccCCCeeEEEEeeC--------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN--------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 22 l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 22 LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 5689999999999998862 35899999999999999999999999999999999987543
No 254
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=91.08 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec--CcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF--GKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|++... +|||||+|.+.++|++|++.|||..+. |++|+|++++.
T Consensus 34 l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 34 LAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp HHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred HHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 5689999999999998764 799999999999999999999999999 99999999974
No 255
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=6.7e-14 Score=90.43 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=51.5
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..+.|++|.|++++.
T Consensus 40 L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 40 LFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 5689999999999998 479999999999999999999999999999999999874
No 256
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.49 E-value=6.9e-15 Score=94.03 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=51.3
Q ss_pred ChhhhccCC-CeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhC-CceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYG-DVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMD-KLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG-~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~v~~s~~ 58 (184)
|.++|++|| .|.+|++++ .++|||||+|.+.++|++|++.++ +..+.|++|+|+|++.
T Consensus 18 l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 18 IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 568999999 899999876 368999999999999999999875 5679999999999874
No 257
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-14 Score=92.11 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.++. .++|+|||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 30 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 568999999999999876 257999999999999999999999999999999999998543
No 258
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.9e-14 Score=92.22 Aligned_cols=59 Identities=12% Similarity=0.312 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. +|||||+|.+.++|.+|++.|||..+.|++|.|.+++...
T Consensus 42 l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 42 MRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred HHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 5689999999999998764 8999999999999999999999999999999999998543
No 259
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=90.99 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|.|++++
T Consensus 32 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 32 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 5689999999999999862 46899999999999999999999999999999999986
No 260
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=89.19 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=51.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|++++ ++|+|||+|.+.++|..|++.| +|..+.|++|+|+|++
T Consensus 29 l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 29 LRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 468999999999999876 5799999999999999999989 9999999999999975
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4e-14 Score=91.72 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|++.+ .+|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 32 l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 32 MRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred HHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 578999999999999875 58999999999999999999999999999999999998543
No 262
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=91.67 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=52.7
Q ss_pred ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|.+.. .++|+|||+|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 43 l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 43 LRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp HHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred HHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 467999999999997643 4689999999999999999999999999999999999874
No 263
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=91.06 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=54.6
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|+.|++.|||..+.|++|.|.+++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 32 LRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 568999999999999886 357999999999999999999999999999999999998543
No 264
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=7e-15 Score=93.74 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=50.9
Q ss_pred ChhhhccCC--CeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYG--DVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG--~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| .|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|.++...
T Consensus 18 l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 18 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 468999999 9999998872 4789999999999999999999999999999999988743
No 265
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=89.31 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=52.9
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++ |||..+.|++|.|++++..
T Consensus 27 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 27 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 5689999999999999862 58999999999999999998 9999999999999999744
No 266
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=5.1e-14 Score=93.70 Aligned_cols=60 Identities=15% Similarity=0.333 Sum_probs=54.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus 42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 42 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 5689999999999999873 35899999999999999999999999999999999987543
No 267
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.48 E-value=5.9e-14 Score=88.79 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|.|+++..
T Consensus 21 l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 21 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 4689999999999998762 689999999999999999999999999999999999863
No 268
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9.3e-14 Score=91.15 Aligned_cols=60 Identities=10% Similarity=0.308 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHh-CCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHM-DKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.| ||..+.|++|.|++++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 32 IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 5689999999999998764 4899999999999999999999 9999999999999998543
No 269
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=91.18 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||+|.+|+++.. ++|+|||+|.+.++|.+|++.|||..+.|++|.|++++
T Consensus 33 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 33 LYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 5689999999999999873 36899999999999999999999999999999999886
No 270
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.1e-14 Score=90.99 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=53.3
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus 34 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 34 LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp HHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred HHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 5689999999999999873 369999999999999999999999999999999999874
No 271
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=93.04 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCc-EEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGK-QMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~s~ 57 (184)
|.++|++||.|.+|++++ .++|||||+|.+.++|.+|++.|||..+.|+ +|.|.++.
T Consensus 38 l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 38 IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 467999999999999875 3689999999999999999999999999999 99999886
No 272
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.3e-14 Score=91.56 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=54.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|++.|||..+.|++|+|++++...
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 29 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 5689999999999999872 57999999999999999999999999999999999997443
No 273
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.3e-14 Score=91.12 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=54.4
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 32 LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 5689999999999998772 57999999999999999999999999999999999997543
No 274
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=3.5e-14 Score=93.95 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=53.3
Q ss_pred ChhhhccCC-CeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYG-DVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG-~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++|| .|..+++.. .++|||||+|.+.++|++|++.|||..+.|++|+|++++.
T Consensus 45 L~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 45 LKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp HHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred HHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 568999999 999999863 5789999999999999999999999999999999999873
No 275
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=87.35 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=52.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++ ++||||+|.+.++|++|++.|||..+.|++|+|++++...
T Consensus 27 l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 27 LRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred HHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 46899999999999985 5799999999999999999999999999999999997543
No 276
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=85.38 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCCCEEEEeCCC----CCCCH----HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeE
Q psy17274 98 PPSPTLHLSNIP----ASVTE----DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHL 169 (184)
Q Consensus 98 ~~~~~l~v~nlp----~~~t~----~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l 169 (184)
||..||.|.-.| .+.-+ .+|.+.|++|| .|..+++.. + .+||+|.+.++|.+|++ |||..+.| |.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~-d--~~fVtF~d~~sAlaAi~-mnG~~v~G-r~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE-D--KMWVTFLEGSSALNVLS-LNGKELLN-RTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS-S--SEEEEESSHHHHHHGGG-GTTCEETT-EEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec-C--CEEEEECChHHHHHHHh-cCCeEeCC-eEE
Confidence 477888888766 23333 67899999999 999999985 3 39999999999999999 99999999 999
Q ss_pred EEEecCcc
Q psy17274 170 RVSFSKSN 177 (184)
Q Consensus 170 ~v~~~~~~ 177 (184)
+|.++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998865
No 277
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.8e-14 Score=90.49 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=52.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.+. +|||||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus 28 l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 28 LFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 56899999999999984 7999999999999999999999999999999999997543
No 278
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=92.89 Aligned_cols=58 Identities=16% Similarity=0.344 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus 43 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 43 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 4689999999999999862 468999999999999999999999999999999999874
No 279
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.47 E-value=2.8e-13 Score=90.07 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=54.5
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|.+++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 32 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 5689999999999999873 36899999999999999999999999999999999997543
No 280
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=6.3e-14 Score=97.57 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=54.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++..++|||||+|.+.++|..|++.|||..+.|++|+|++++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 5689999999999999887799999999999999999999999999999999999874
No 281
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.6e-14 Score=91.73 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=52.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|++|+|++++.
T Consensus 44 l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 44 LIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46899999999999987 4789999999999999999999999999999999998873
No 282
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=9.8e-14 Score=91.42 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=52.3
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 48 L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 48 LNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred HHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 56899999999999987 799999999999999999999999999999999998743
No 283
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.8e-14 Score=92.01 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus 40 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 40 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 5689999999999999862 369999999999999999999999999999999999874
No 284
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=9.1e-14 Score=93.42 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=54.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.+. .++|||||+|.+.++|..|++.|||..+.|++|.|.+++...
T Consensus 54 L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 54 LRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 56899999999999986 578999999999999999999999999999999999998543
No 285
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3e-13 Score=89.04 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=52.7
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecC-----cEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFG-----KQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~s~~~ 59 (184)
|.++|++||+|.+|+++.. |||||+|.+.++|++||+.|||..+.| ++|.|++++..
T Consensus 32 l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 32 LKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred HHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 5689999999999998765 999999999999999999999999999 99999998743
No 286
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=6.4e-14 Score=93.60 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=52.1
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 57 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 57 LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 568999999999999986 248999999999999999999999999999999999875
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=3e-14 Score=88.94 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=48.4
Q ss_pred ChhhhccCCCeeEEEEee---CCCCeEEEEeCCHHHHHHHHHHhCCceecCc-EEEE
Q psy17274 1 MFSLTGVYGDVLRVKILY---NKKDSALIQMAESHQAHLAMMHMDKLRVFGK-QMRV 53 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v 53 (184)
|.++|++||+|.+|++.+ .++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 24 l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 24 IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 467999999999999875 3689999999999999999999999999999 8876
No 288
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.45 E-value=5.3e-14 Score=89.84 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEeeC---CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN---KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 25 l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 25 LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred HHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5689999999999998872 5799999999999999999999999999999999999743
No 289
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=8.7e-14 Score=92.98 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=52.3
Q ss_pred ChhhhccCCCeeEEEEeeC---------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN---------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.+.|++||+|.+|+|.+. ++|+|||+|.++++|.+|++.|||..|.||+|.|.|+..
T Consensus 42 l~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 42 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4678999999999999873 238999999999999999999999999999999999753
No 290
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=1e-13 Score=91.43 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|..|++.|||..+.|++|.|++++.
T Consensus 43 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 43 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 5689999999999998762 479999999999999999999999999999999999874
No 291
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.1e-13 Score=90.88 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|.|+++.
T Consensus 46 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 46 IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999998863 47899999999999999999999999999999999985
No 292
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=90.22 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=52.0
Q ss_pred ChhhhccCCCeeE--------EEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLR--------VKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~--------v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+ |+++.. ++|+|||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 30 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 30 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 4689999999999 988863 36899999999999999999999999999999999874
No 293
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.2e-13 Score=93.94 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=53.5
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||+|.+|+++. ..+|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus 63 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 63 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 568999999999999986 3689999999999999999999999999999999999874
No 294
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=1.3e-13 Score=90.99 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=52.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|++ ++|||||+|.+.++|+.|++.|||..+.|++|.|++++..
T Consensus 45 l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 45 VETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 5689999999999998 5799999999999999999999999999999999999743
No 295
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=90.77 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 25 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 25 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 5689999999999999863 3799999999999999999999999999999999998744
No 296
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=3.1e-13 Score=91.06 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=55.3
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|.+|++.|||..+.|++|+|+++.....
T Consensus 52 l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 52 IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 4689999999999999873 689999999999999999999999999999999999985444
No 297
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=1.8e-13 Score=86.74 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=52.4
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|+ .|||..+.|++|.|++++.
T Consensus 23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 23 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999998863 4899999999999999999 9999999999999999874
No 298
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=93.79 Aligned_cols=60 Identities=17% Similarity=0.377 Sum_probs=54.5
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|+.||.|.+|+++.. ++|+|||+|.+.++|.+|++.|||..+.|++|+|++++...
T Consensus 59 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 59 LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 5689999999999999863 37899999999999999999999999999999999998543
No 299
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=3.8e-13 Score=87.74 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=52.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|+++ ++||||+|.+.++|++|++.|||..+.|++|.|++++....
T Consensus 28 l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 28 LEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 56899999999999985 58999999999999999999999999999999999975443
No 300
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.7e-13 Score=88.81 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhC------CceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMD------KLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|.+|++.|| |..+.|++|.|.+++..
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 32 LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 568999999999999885 258999999999999999999999 99999999999998744
No 301
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=85.86 Aligned_cols=56 Identities=27% Similarity=0.403 Sum_probs=51.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++ +++|||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 26 l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 26 LRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 56899999999999986 579999999999999999999999999999999999744
No 302
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-12 Score=87.06 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCC-HHHHHHHHHHh--cCeecCCCCeEEEEe
Q psy17274 98 PPSPTLHLSNIPAS-VTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS-IEEAITALIQM--HNHQLSEQSHLRVSF 173 (184)
Q Consensus 98 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~-~~~A~~Ai~~l--ng~~i~g~~~l~v~~ 173 (184)
+++.+|+|+||++. +++++|+++|++|| .|..|.+.. +...|||+|.+ .++|..|+..| +|..|.| ..+++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G-~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g-~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHG-EIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRN-KEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSC-CEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS-SSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcC-CEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeC-cEEEEEE
Confidence 37889999999999 99999999999999 999999875 66789999999 89999999999 4889999 6888876
Q ss_pred cC
Q psy17274 174 SK 175 (184)
Q Consensus 174 ~~ 175 (184)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 303
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.7e-13 Score=89.50 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=52.0
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||+|.+|.++. .++|||||+|.+.++|..|++ ++|..+.|++|.|.++..
T Consensus 28 L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 28 IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 468999999999999986 368999999999999999998 899999999999998753
No 304
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=4.2e-13 Score=90.39 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=52.7
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|+ .|||..+.|++|.|++++..
T Consensus 53 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 53 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 5689999999999998862 4799999999999999999 89999999999999998743
No 305
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.8e-13 Score=85.84 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=51.4
Q ss_pred ChhhhccC--CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVY--GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~y--G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++| |.|.+|++ .+|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 32 l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 32 IEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp HHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred HHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 56899999 99999987 4699999999999999999999999999999999999743
No 306
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=89.84 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=53.3
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus 32 l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 32 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 5689999999999998873 368999999999999999999999999999999999874
No 307
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=88.37 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|. +.++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++.
T Consensus 36 l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 36 LKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred HHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 468999999997 55554 6789999999999999999999999999999999999874
No 308
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.41 E-value=2.9e-13 Score=88.65 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=53.5
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCcee---cCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRV---FGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|++.|||..+ .|++|.|.+++..
T Consensus 30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 30 LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence 5689999999999998872 579999999999999999999999988 8899999999744
No 309
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.41 E-value=2.1e-13 Score=92.13 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=54.3
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+|.++.. ++|+|||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus 39 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 39 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 5689999999999998763 48999999999999999999999999999999999997443
No 310
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.1e-13 Score=88.24 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|++ .+.|++|.|++++..
T Consensus 34 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 5689999999999999872 579999999999999999999999 899999999999744
No 311
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=9.7e-14 Score=85.24 Aligned_cols=55 Identities=5% Similarity=0.118 Sum_probs=49.7
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||+|.+|+++.. ++|+|||+|.+.++|++|++ |||..+.|++|.|+++
T Consensus 16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 16 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4689999999999998762 47999999999999999997 9999999999999864
No 312
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.9e-13 Score=89.85 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=53.0
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus 42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 42 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 568999999999999985 36799999999999999999 99999999999999998743
No 313
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.8e-13 Score=89.14 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=53.1
Q ss_pred ChhhhccCCCee--------EEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVL--------RVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~--------~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|. .|+++.. ++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 32 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 32 LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 568999999999 6888762 4799999999999999999999999999999999998743
No 314
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=88.55 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=53.3
Q ss_pred ChhhhccCCCee-EEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcE----EEEEEccCc
Q psy17274 1 MFSLTGVYGDVL-RVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQ----MRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~-~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~----l~v~~s~~~ 59 (184)
|.++|++||.|. +|+++.. ++|||||+|.+.++|++|++.|||..+.|+. |+|.|++..
T Consensus 26 l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 26 ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 568999999999 9998873 4589999999999999999999999999999 999998743
No 315
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-13 Score=89.40 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=51.7
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.++.++. .++|+|||+|.+.++|++|++.|||..+.|++|+|++++.
T Consensus 32 l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 468999999998776665 2479999999999999999999999999999999999873
No 316
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.39 E-value=1e-13 Score=88.16 Aligned_cols=59 Identities=24% Similarity=0.462 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||+|.+|+++. .++|+|||+|.+.+ |..|++.|||..+.|++|+|+++....
T Consensus 18 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 18 VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 467999999999999886 35899999999999 999999999999999999999987543
No 317
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.39 E-value=5e-13 Score=93.69 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=54.2
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|.+|++.|||..+.|++|.|.+++..
T Consensus 87 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 87 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 568999999999999876 26899999999999999999999999999999999999843
No 318
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=94.57 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred ChhhhccCC--CeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYG--DVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG--~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| .|.+|+++. .++|||||+|.+.++|++||+.|||..+.|++|.|.++...
T Consensus 72 L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 72 LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 568999999 999999986 25789999999999999999999999999999999998643
No 319
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=87.88 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++|| |.+|+++.. ++|+|||+|.+.++|.+|+ .|||..+.|++|+|++++.
T Consensus 36 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 36 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 468999999 999998763 4799999999999999999 9999999999999999874
No 320
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=87.88 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=53.7
Q ss_pred Chhhhcc-CCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCce-ecCcEEEEEEccCc
Q psy17274 1 MFSLTGV-YGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLR-VFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~-yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~l~v~~s~~~ 59 (184)
|.++|++ ||.|.+|+++.. ++|||||+|.+.++|.+|++.|||.. +.|++|.|++++..
T Consensus 26 l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 26 LYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred HHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 5689999 999999999873 57999999999999999999999999 99999999998643
No 321
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=91.94 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 80 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 80 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5689999999999998762 5899999999999999999999999999999999875
No 322
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=1.5e-13 Score=88.24 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=51.5
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.++.++. .++|+|||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 32 l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999887776 247999999999999999999999999999999999875
No 323
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6e-13 Score=86.88 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=51.6
Q ss_pred ChhhhccCCCeeEEEEeeC------CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN------KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| |.+|+++.. ++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus 32 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 32 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 568999999 999998862 3799999999999999999 99999999999999998743
No 324
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-13 Score=87.13 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=50.8
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|+.|++.+++
T Consensus 22 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 22 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4689999999999998862 48999999999999999999999999999998876554
No 325
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.8e-13 Score=85.55 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=50.6
Q ss_pred ChhhhccCCC-eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGD-VLRVKILYNKKDSALIQMAESHQAHLAMMHMDK-LRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~-V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|++|+|++++..
T Consensus 25 l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 25 LRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp HHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred HHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 4689999999 6666653 579999999999999999999999 9999999999999743
No 326
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.5e-13 Score=88.24 Aligned_cols=60 Identities=15% Similarity=0.355 Sum_probs=52.6
Q ss_pred ChhhhccCCCe----eEEEEee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDV----LRVKILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V----~~v~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.| ..+++.. .++|||||+|.+.++|+.|++.|||..+.|++|.|++++...
T Consensus 42 l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 42 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred HHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 56899999999 5666554 468999999999999999999999999999999999998544
No 327
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.37 E-value=7e-13 Score=92.82 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 56 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 56 IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5689999999999999873 4689999999999999999999999999999999999753
No 328
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.37 E-value=4.5e-13 Score=91.69 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=53.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 568999999999999876 35799999999999999999999999999999999999843
No 329
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=81.83 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=62.1
Q ss_pred CCCCEEEEeCCCCC-----CCH----HHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCe
Q psy17274 98 PPSPTLHLSNIPAS-----VTE----DELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSH 168 (184)
Q Consensus 98 ~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~ 168 (184)
||..||.|.-++++ .-+ .+|.+.|++|| .|..+++.. ++ +||+|.+.++|.+||+ |||..++| |.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~-d~--~fVtF~d~~sAl~AI~-ldG~~v~G-r~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQ-GQ--MLVTFADSHSALSVLD-VDGMKVKG-RA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEET-TE--EEEECSCSHHHHHHHH-GGGSEETT-EE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEec-Cc--EEEEEcChHHHHHHHh-cCCeeeCC-eE
Confidence 47889999988743 222 56899999999 999999885 33 9999999999999999 99999999 99
Q ss_pred EEEEecCc
Q psy17274 169 LRVSFSKS 176 (184)
Q Consensus 169 l~v~~~~~ 176 (184)
|+|++..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998654
No 330
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.2e-12 Score=85.25 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=51.4
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| |.+|+++.. ++|||||+|.+.++|++|+ .|||..+.|++|.|++++..
T Consensus 32 l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 32 IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 568999997 999999873 3689999999999999999 99999999999999998743
No 331
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=5e-13 Score=87.40 Aligned_cols=59 Identities=10% Similarity=0.212 Sum_probs=52.7
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||+|.+|+++.. ++|||||+|.+.++|++|++. +|..+.|++|.|++++...
T Consensus 33 l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 33 LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 5689999999999999873 368999999999999999988 9999999999999887443
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=7.9e-13 Score=83.74 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++| .|.+|++. .++|+|||+|.+.++|++|++.|||..+.|++|+|+++....
T Consensus 22 l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 22 VHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46899999 99999985 578999999999999999999999999999999999987543
No 333
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=4.5e-13 Score=82.56 Aligned_cols=55 Identities=7% Similarity=0.204 Sum_probs=50.2
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||+|.+|.++.. ++|+|||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 17 l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 17 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4689999999999998863 47999999999999999999999 9999999999876
No 334
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=86.53 Aligned_cols=58 Identities=7% Similarity=0.145 Sum_probs=52.6
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++. +|..+.|++|.|++++..
T Consensus 44 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 44 LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 5689999999999999872 579999999999999999987 999999999999998744
No 335
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=7.4e-13 Score=98.59 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=52.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee------------cCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV------------FGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~------------~g~~l~v~~s~~~~ 60 (184)
|.++|++||+|.+|+++. ++|+|||+|.+.++|+.|++.|+|..+ .|+.|.|.|++...
T Consensus 160 L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 160 IRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 568999999999999886 679999999999999999999999999 89999999998544
No 336
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.1e-12 Score=87.08 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=51.6
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCcee--------cCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRV--------FGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~--------~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++.|||..+ .|++|.|.|+.
T Consensus 42 l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 42 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 4689999999999999873 468999999999999999999999999 57889999987
No 337
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.35 E-value=7.9e-13 Score=93.46 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=54.0
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|.++.. ++|||||+|.+.++|..||+.|||..+.|++|.|.|+...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 5689999999999999873 4799999999999999999999999999999999998743
No 338
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.35 E-value=1.8e-12 Score=85.39 Aligned_cols=57 Identities=7% Similarity=0.189 Sum_probs=51.1
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|.+|++.+ |..+.|++|.|+++..
T Consensus 42 L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 42 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFP 103 (109)
T ss_dssp HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence 5689999999999999862 5799999999999999999876 5999999999999873
No 339
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.35 E-value=1.1e-12 Score=82.78 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=48.9
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||.|.+|+++.. ++|+|||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 28 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 28 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 5689999999999999863 47899999999999999995 5888999999999875
No 340
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.4e-13 Score=86.84 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=53.1
Q ss_pred ChhhhccCCC-eeEEEEee------CCCCeEEEEeCCHHHHHHHHHHhC--CceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGD-VLRVKILY------NKKDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~-V~~v~~~~------~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||. |.+|.++. .++|||||+|.+.++|..|++.|+ +..+.|++|.|++++...
T Consensus 25 l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 25 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 4689999999 99999872 468999999999999999999996 589999999999997543
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=83.69 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred ChhhhccCCCeeEEE-Eee-CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVK-ILY-NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~-~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+ ++. ...|.|||+|.+.++|..|++.|||..+.|++|.|++++..
T Consensus 32 l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 32 LDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 468999999999995 665 34566999999999999999999999999999999999754
No 342
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=82.43 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=51.2
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++| .|.+|+++.. ++|+|||+|.+.++|++|++ |||..+.|++|.|.+++.
T Consensus 27 l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 27 VMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp HHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred HHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 46899999 9999999873 47899999999999999999 999999999999999874
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.9e-12 Score=86.14 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=49.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcE-----EEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQ-----MRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-----l~v~~s~ 57 (184)
|.++|++||+|.+|.++.. |||||+|.+.++|+.||+.|||..+.|++ |+|..+.
T Consensus 33 l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 33 LKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp HHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred HHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 5689999999999998754 99999999999999999999999999998 6666554
No 344
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.32 E-value=6.8e-13 Score=85.31 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=50.7
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|..+.....++|+|||+|.+.++|..|++.|||..+.|++|.|++++.
T Consensus 33 l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 33 LKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp HHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred HHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4689999999988822224689999999999999999999999999999999999874
No 345
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=82.42 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=49.0
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.| +++. .++|||||+|.+.++|++|++.|||..+.|++|+|++++..
T Consensus 32 l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 32 LQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 56899999988 3333 36899999999999999999999999999999999999754
No 346
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.31 E-value=7.1e-13 Score=90.21 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=52.8
Q ss_pred ChhhhccCCCeeE--EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCc----eecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLR--VKILY-----NKKDSALIQMAESHQAHLAMMHMDKL----RVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~--v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.. |+++. .++|||||+|.+. +|.+|++.|||. .+.|++|.|++++...
T Consensus 40 L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 40 ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 5689999999976 88887 2589999999999 999999999999 9999999999997543
No 347
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.9e-12 Score=81.46 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=47.6
Q ss_pred ChhhhccCCCeeEEEEeeC-CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN-KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+| ++.. ...||||+|.+.++|+.|++ |||..+.|++|.|+++..
T Consensus 25 l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 25 LSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp HHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred HHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 46899999999998 3332 22299999999999999999 999999999999987753
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.30 E-value=3.2e-12 Score=91.38 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=55.1
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|.+|.+.. .++|+|||+|.+.++|..|++.|||..+.|++|.|+++.....
T Consensus 105 L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 105 IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp HHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred HHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 468999999999999876 3579999999999999999999999999999999999975543
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=88.73 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=51.4
Q ss_pred ChhhhccCCCeeE--------EEEee--CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLR--------VKILY--NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~--------v~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+ |++.. .++|||||+|.+.++|..|++.|||..+.|++|.|.+++..
T Consensus 62 L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 62 LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4689999999876 44443 57899999999999999999999999999999999999743
No 350
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.29 E-value=1.4e-12 Score=96.90 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=54.0
Q ss_pred ChhhhccCC--CeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYG--DVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG--~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| .|.+|+|+.. ++|||||+|.+.++|++||+.|||..|.|++|+|.+++..
T Consensus 85 L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 85 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 578999999 9999999872 5799999999999999999999999999999999998644
No 351
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.2e-12 Score=79.27 Aligned_cols=53 Identities=9% Similarity=0.327 Sum_probs=48.6
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.+.|++||+|..+++.. +.+||+|.+.++|.+|++ |||..+.||.|+|.+.+
T Consensus 32 L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 32 LLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 467899999999999865 559999999999999997 99999999999999876
No 352
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.6e-12 Score=83.23 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=51.6
Q ss_pred ChhhhccCCCeeE-EEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDVLR-VKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V~~-v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|++||.|.+ |.++. .++|+|||+|.+.++|++|++. ||..+.|+.|.|.++....
T Consensus 32 l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 32 IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 5689999999997 87765 3589999999999999999987 9999999999999886443
No 353
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.3e-12 Score=85.56 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=52.7
Q ss_pred ChhhhccCCCe-eEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGDV-LRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~V-~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|+.||.| .+|+++. .++|||||+|.+.++|++|++. ||..+.|++|.|.++....
T Consensus 32 l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 32 VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 56899999999 8899876 3689999999999999999977 9999999999999987543
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=7.5e-13 Score=81.17 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=49.0
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||+|.+|.++. .++|+|||+|.++++|++|++ ++|..+.|++|.|+++
T Consensus 16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 16 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 468999999999999875 358999999999999999997 4999999999999864
No 355
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=8.5e-12 Score=81.17 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=50.5
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++ ++..+.|++|.|.++...
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 32 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 5689999999999999873 36899999999999999998 578999999999998743
No 356
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=6.9e-12 Score=79.59 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=46.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCcee--cCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRV--FGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++..++|||||+|.+.++|+. |+|..+ .|++|.|.++..
T Consensus 28 L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 28 LQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp HHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred HHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 568999999999999988889999999999999983 566655 489999998863
No 357
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=1.9e-12 Score=86.54 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=52.5
Q ss_pred ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCcc
Q psy17274 1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60 (184)
Q Consensus 1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~ 60 (184)
|.++|+.||. |.+|+++. .++|+|||+|.+.++|++|++ |||..+.|+.|+|.++....
T Consensus 34 l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 34 VQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp HHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred HHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 5689999999 89999886 257899999999999999998 99999999999999986443
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=3.5e-13 Score=89.77 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=53.2
Q ss_pred ChhhhccCCCeeE--------EEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLR--------VKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~--------v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.|.+ |+++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 24 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 24 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 5789999999998 87775 25799999999999999999999999999999999998744
No 359
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=8.6e-11 Score=75.58 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-----CCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEK-----GFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~-----G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
.++|-+.|||+++++..++.+.+++ | .+..|.+.+ +.+-|+|+|.+...|.+|.-.|||..+.| ++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g-~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~g-r~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEK-DIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQG-KVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTT-TCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETT-EEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCcc-ceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecC-eEEEec
Confidence 5789999999999999999999999 9 899998886 77889999999999999999999999999 899997
No 360
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.25 E-value=2.3e-12 Score=88.17 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=52.0
Q ss_pred ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||. |.+|+++. .++|+|||+|.+.++|++|++ |||..+.|+.|.|.++...
T Consensus 61 L~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 61 VQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 5689999999 88999886 357899999999999999998 9999999999999988643
No 361
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.25 E-value=8.7e-13 Score=85.61 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=48.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+ .++. .++|||||+|.+.++|++|++ |||..+.|++|.|.+++.
T Consensus 34 l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 34 LKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp HHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred HHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 4679999999877 3332 468999999999999999998 999999999999999873
No 362
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-12 Score=88.22 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=50.0
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.||.|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++...
T Consensus 42 l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 42 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 568999999998743333 357999999999999999998 9999999999999998744
No 363
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=80.44 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=50.5
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|+.| .|.+|+++. .++|+|||+|.+.++|++|+ .+||..+.|+.|.|..+..
T Consensus 33 l~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 33 VRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred HHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 56899999 899999986 36899999999999999999 7999999999999988763
No 364
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=1.4e-11 Score=99.58 Aligned_cols=61 Identities=23% Similarity=0.428 Sum_probs=55.5
Q ss_pred ChhhhccCCCeeEEEEeeC-----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCccc
Q psy17274 1 MFSLTGVYGDVLRVKILYN-----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~~~ 61 (184)
|.++|++||.|..|.|+.. ++|||||+|.+.++|..||+.|||..|.|++|.|.+++....
T Consensus 119 L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 119 LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 5789999999999999862 589999999999999999999999999999999999986543
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.22 E-value=1.2e-11 Score=77.90 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=47.9
Q ss_pred ChhhhccC----C-------CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEE
Q psy17274 1 MFSLTGVY----G-------DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVM 54 (184)
Q Consensus 1 L~~lF~~y----G-------~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 54 (184)
|.++|++| | .|.++++.. .+|||||+|.+.++|++|+ .|||..+.|++|+|+
T Consensus 23 l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 23 MMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred HHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 46789999 8 999999765 5899999999999999999 999999999999997
No 366
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=7.7e-12 Score=81.42 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=49.1
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.| +|+++.. ++|+|||+|.+.++|++|+ .+|+..+.|+.|.|.++..
T Consensus 32 l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 32 IYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp HHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred HHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 56899999955 9998872 5789999999999999999 5799999999999998763
No 367
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=80.49 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=46.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.|+. |+++. .++|||||+|.+.++|++|++.|||..+.|++|.|++++..
T Consensus 32 l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 32 LKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp HHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4678888864 44444 24699999999999999999999999999999999999843
No 368
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-12 Score=83.66 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=51.8
Q ss_pred ChhhhccCCC---eeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGD---VLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~---V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.||. |.+|+++. .++|+|||+|.+.++|++|++ +||..+.|+.|.|.++...
T Consensus 28 l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 28 VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred HHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 4689999998 89999886 368999999999999999998 9999999999999988643
No 369
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.5e-11 Score=82.22 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=49.9
Q ss_pred ChhhhccCCCeeEEEEee-----CCCCeEEEEeCC----HHH----HHHHHH--HhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY-----NKKDSALIQMAE----SHQ----AHLAMM--HMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~-----~~~g~afV~f~~----~~~----A~~Ai~--~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|+.||+|.++.++. .++|+|||+|.+ +++ |.+|+. .|||..+.|++|+|.+.+..
T Consensus 23 Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 23 IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 468999999999999887 368999999996 433 899998 89999999999999987643
No 370
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.5e-11 Score=77.71 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=46.1
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|+++..++|||||+|.+.++|++|+.. +..+.|++|.|.+++.
T Consensus 22 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 22 LREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp HHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred HHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 5689999999999999877899999999999999764321 2344789999998874
No 371
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.16 E-value=1.1e-11 Score=80.58 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=50.1
Q ss_pred ChhhhccCCCeeEEEEeeC----CCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYN----KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|.++|++||.|.+|+++.. ++|||||+|.+.++|++|++ +|..+.|++|.|.++.
T Consensus 26 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 26 IRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred HHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4689999999999999873 57999999999999999997 9999999999999876
No 372
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.15 E-value=8.9e-12 Score=85.53 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=50.7
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++|| |.+|+++. .++|||||+|.+.++|++|+ .+|+..+.|+.|.|.++...
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 568999999 77999886 36899999999999999999 89999999999999987643
No 373
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=6.9e-11 Score=85.55 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=49.8
Q ss_pred ChhhhccCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++||.|.+|++.+ .++|+|||+|.+.++|..|++.++ ..+.|++|.|.+.+.
T Consensus 126 L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 126 IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred HHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 467999999999999886 357999999999999999997665 589999999998763
No 374
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=1.8e-10 Score=85.03 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCEEEEeCCC-----CCCCHHHHHHHHHhcCCceeEEEEcc---------CCCceEEEEeCCHHHHHHHHHHhcCeecC
Q psy17274 99 PSPTLHLSNIP-----ASVTEDELKEAFTEKGFTVKGFKFFP---------KDRKMALLQLDSIEEAITALIQMHNHQLS 164 (184)
Q Consensus 99 ~~~~l~v~nlp-----~~~t~~~l~~~F~~~G~~v~~v~v~~---------~~~~~afV~f~~~~~A~~Ai~~lng~~i~ 164 (184)
++.++.+.|+- ..-.+++|++.|++|| .|.++.|.. ..+|++||+|.+.++|.+|+..|||+.++
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G-~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccC-CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 45667777764 2234789999999999 999999863 23589999999999999999999999999
Q ss_pred CCCeEEEEecCc
Q psy17274 165 EQSHLRVSFSKS 176 (184)
Q Consensus 165 g~~~l~v~~~~~ 176 (184)
| |.|+++|...
T Consensus 202 g-r~i~~~~~~~ 212 (222)
T 3dxb_A 202 G-RKVVAEVYDQ 212 (222)
T ss_dssp S-SBCEEEECCH
T ss_pred C-eEEEEEEcCH
Confidence 9 9999999763
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.7e-11 Score=75.27 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=46.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.+.|++||+|..|++.. +.+||+|.+.++|.+||+ |||..+.||.|+|.+-
T Consensus 41 L~~~F~~~G~Vilvr~v~---d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 41 LMQTLGSYGTIVLVRINQ---GQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHSCCSEEEEET---TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHCCCEEEEEEec---CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 467899999999999875 449999999999999998 9999999999999753
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=9e-11 Score=86.61 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=51.8
Q ss_pred ChhhhccCCCeeEEEEee---------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILY---------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
|++.|++||+|.+|.+.+ .++|++||+|.+.++|.+|++.|||+.|.||+|.+.|+.
T Consensus 146 l~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 146 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999999874 246899999999999999999999999999999999975
No 377
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=76.39 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=42.5
Q ss_pred ChhhhccCCCeeEEEEee--------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEc
Q psy17274 1 MFSLTGVYGDVLRVKILY--------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s 56 (184)
|.++|++||.|. +.++. .++|||||+|.+.++|++|++.|+ .+.|+.|.+..+
T Consensus 25 L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 25 ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 568999999999 76664 248999999999999999999983 366666666543
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1.2e-10 Score=91.08 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=48.7
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceec---Cc--EEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVF---GK--QMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~--~l~v~~s~ 57 (184)
|.++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+ +|.+.|..
T Consensus 37 L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 37 LLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 568999999999998654 7899999999999999999999999884 55 67788764
No 379
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.8e-11 Score=81.35 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=50.0
Q ss_pred ChhhhccCCCe----eEEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 1 MFSLTGVYGDV----LRVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 1 L~~lF~~yG~V----~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
|.++|++||.| .+|+++. .++|+|||+|.+.++|++|++. |+..+.|+.|.|..+...
T Consensus 40 l~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 40 VVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 56899999986 6888876 3579999999999999999975 999999999999887643
No 380
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.02 E-value=1.3e-10 Score=78.35 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=48.6
Q ss_pred ChhhhccCCCee--EEEEee----CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccC
Q psy17274 1 MFSLTGVYGDVL--RVKILY----NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58 (184)
Q Consensus 1 L~~lF~~yG~V~--~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~ 58 (184)
|.++|++| .|. +|+++. .++|||||+|.++++|++|++ +++..+.|+.|.|..+..
T Consensus 59 L~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 59 IVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred HHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 56899999 676 898876 368999999999999999997 578999999999988763
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=1.6e-07 Score=60.15 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=62.4
Q ss_pred CEEEEeCCCCCC-C----HHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEEecC
Q psy17274 101 PTLHLSNIPASV-T----EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175 (184)
Q Consensus 101 ~~l~v~nlp~~~-t----~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~~~~ 175 (184)
++|++.||+..+ . .+.++++|..|+ ++.....++ +=.-..|.|.++++|.+|-..||+..+.| +.|+|.|+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~-~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g-~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD-KDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLG-KEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC-SSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETT-EECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC-cCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecC-ceeEEEecC
Confidence 469999998755 3 256799999999 777776664 54568999999999999999999999999 899999997
Q ss_pred cc
Q psy17274 176 SN 177 (184)
Q Consensus 176 ~~ 177 (184)
+.
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 382
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=2.5e-07 Score=61.47 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=47.9
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCC-HHHHHHHHHHhC--CceecCcEEEEEEcc
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAE-SHQAHLAMMHMD--KLRVFGKQMRVMISK 57 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~-~~~A~~Ai~~l~--g~~~~g~~l~v~~s~ 57 (184)
|.++|++||+|..|.+... ...|||+|.+ +++|..|+..|| |..+.|..+.++...
T Consensus 36 Lke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 36 LHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 4679999999999998764 4589999999 799999999994 778899888888654
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1e-05 Score=51.55 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~----~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..++|.|.|||+.++++.|.-.|+. -|+.|..++..+ +.|+|+|.+.+.|.+.++. ..+.+.+ ..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~-~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHG-AQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSS-SBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecC-eEEEEE
Confidence 3568999999999999999999988 344899998765 8899999999999998873 3677777 588775
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.9e-06 Score=54.03 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=45.3
Q ss_pred hhhccC-----CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274 3 SLTGVY-----GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55 (184)
Q Consensus 3 ~lF~~y-----G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 55 (184)
++.++| |.+.+|.+.... +=|+|+|.|...|-+|.-.|+|.+|.|++|+|.-
T Consensus 40 ~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 40 QFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred HHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 566777 999999865544 6699999999999999999999999999999973
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.05 E-value=4.4e-05 Score=47.91 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=61.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCC-------CceEEEEeCCHHHHHHHHHHhcCeecCCC----CeEE
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD-------RKMALLQLDSIEEAITALIQMHNHQLSEQ----SHLR 170 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~-------~~~afV~f~~~~~A~~Ai~~lng~~i~g~----~~l~ 170 (184)
.|.|.+||+++|++++.+..+... .+......+.. ...|+|.|.+.+++..-.+.++|+.+.++ .+-.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 588999999999999999999998 77766665421 36899999999999999999999988664 2446
Q ss_pred EEecCcc
Q psy17274 171 VSFSKSN 177 (184)
Q Consensus 171 v~~~~~~ 177 (184)
|.||..+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7776544
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=3.8e-05 Score=48.39 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln 159 (184)
...+++| +.|+...-.||.++|++|| .| .|+.+ +-..|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv-~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SC-CCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CE-EEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 3567777 9999999999999999998 55 36555 34689999999999999999774
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=8.7e-05 Score=48.73 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCeecCCCCeEEEE
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVS 172 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~~i~g~~~l~v~ 172 (184)
..-|.|.+.|+.. ...+.+.|++|| .|.+... +...+.-.|+|.++.+|.+||. .||..++|.-.|-|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G-~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYG-NILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTS-CEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhC-cEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 4569999999886 567888999999 9988865 4567899999999999999999 599999873233333
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.77 E-value=2.4e-05 Score=49.42 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=47.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhc
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ln 159 (184)
..+++| +.|+...-.||.++|++|| .| .|+.+ +-..|||.|.+++.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv-~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EE-EEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CE-EEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 456777 9999999999999999999 55 46666 34689999999999999999875
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00014 Score=46.51 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=49.6
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
-+||..|+++.+...+++- .-..|.|.++++|.+|-..|++..|.|+.|+|.++.
T Consensus 28 e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 28 ESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999999998877743 468999999999999999999999999999999987
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00021 Score=46.88 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=44.7
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecC-cEEEEEEcc
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFG-KQMRVMISK 57 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~v~~s~ 57 (184)
.+.|++||+|.+... .....+-.|.|.++.+|++|+ ..||..+.| -.|=|....
T Consensus 41 L~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 41 LLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred HHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 467999999999875 346799999999999999999 679999975 556676644
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.42 E-value=0.00042 Score=43.75 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccC-------CCceEEEEeCCHHHHHHHHHHhcCeecCCC----Ce
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-------DRKMALLQLDSIEEAITALIQMHNHQLSEQ----SH 168 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~-------~~~~afV~f~~~~~A~~Ai~~lng~~i~g~----~~ 168 (184)
+-.|.|+.||+++||+++.+.+++.- .+......+. .-..|+|.|.+.++...-.+..+|+.+-++ .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLP-AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCS-SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcC-ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 44599999999999999988888765 5443333321 125799999999999999999999998764 24
Q ss_pred EEEEecCc
Q psy17274 169 LRVSFSKS 176 (184)
Q Consensus 169 l~v~~~~~ 176 (184)
-.|.||..
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 55666653
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.10 E-value=0.00034 Score=56.62 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHH
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~ 157 (184)
..+.|+|. .|..+++.+|.+.|++|| .|.++........+|.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g-~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFG-PINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGS-CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcC-CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 35679998 799999999999999999 9999988764557999999999988876543
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.98 E-value=0.0013 Score=43.84 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeE-EEEc----------------c--CCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKG-FKFF----------------P--KDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~-v~v~----------------~--~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
...|.|.+.|++.++ .+.+.|++|| .|.. +... | ...+.-.|+|+++.+|.+||. -||
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G-~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFG-TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGS-CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhc-eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 446889999888754 5678899999 7655 2211 1 124677999999999999998 799
Q ss_pred eecCCCCeEEEEec
Q psy17274 161 HQLSEQSHLRVSFS 174 (184)
Q Consensus 161 ~~i~g~~~l~v~~~ 174 (184)
..++| .-|-|..=
T Consensus 84 ~ii~G-~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNG-VLLGVIPY 96 (132)
T ss_dssp CEETT-EECEEEEC
T ss_pred eEeCc-EEEEEEEC
Confidence 99999 56666543
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.96 E-value=0.00033 Score=46.65 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=44.7
Q ss_pred hhhhccCCCeeEE-EEee------------------CCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEccCc
Q psy17274 2 FSLTGVYGDVLRV-KILY------------------NKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59 (184)
Q Consensus 2 ~~lF~~yG~V~~v-~~~~------------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~~~ 59 (184)
.+.|++||.|.+- ...+ ...++-.|+|.++.+|.+|+ ..||..+.|..|-|.+....
T Consensus 24 I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 24 IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEECCHH
T ss_pred HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEECCHH
Confidence 4689999999772 1110 13678899999999999999 67999999998888876544
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.62 E-value=0.00089 Score=42.28 Aligned_cols=39 Identities=18% Similarity=0.465 Sum_probs=32.2
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD 42 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 42 (184)
|.++|++|| -|.|.+-.-..|||.|.+++.|..|+.++.
T Consensus 22 i~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 22 LYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 578999999 455555456889999999999999998875
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0092 Score=37.96 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274 9 GDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55 (184)
Q Consensus 9 G~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 55 (184)
|+|.+|.... +.|+|+|.+.+.|++.++. ....|.|.+|.|..
T Consensus 38 G~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 38 GPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred ceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 7899998754 8899999999999999943 35678888888864
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.43 E-value=0.0011 Score=41.72 Aligned_cols=39 Identities=18% Similarity=0.460 Sum_probs=30.8
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMD 42 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 42 (184)
|.++|++||.|. |.+-.-..|||.|.+++.|..|+.+++
T Consensus 32 I~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 32 LYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHTTTCSCC---CEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 578999999543 223245889999999999999998764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.64 E-value=0.0098 Score=48.14 Aligned_cols=40 Identities=5% Similarity=-0.000 Sum_probs=31.4
Q ss_pred ChhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHH
Q psy17274 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMH 40 (184)
Q Consensus 1 L~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~ 40 (184)
|++.|++||+|.++......+-||.|+|.+.+++..++..
T Consensus 69 l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 69 FLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred HHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4678999999999987777778999999999999977643
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.18 E-value=0.14 Score=42.01 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=46.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcC
Q psy17274 100 SPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHN 160 (184)
Q Consensus 100 ~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng 160 (184)
..+++|+ .|..+...+|.++|+.|| .+ .|+.+ +...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg-~v-~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFG-NI-QISWI--DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGC-CC-EEEEC--SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcC-CE-EEEEE--cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 899999999999999999 54 45544 567899999999999999998863
No 400
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=77.67 E-value=5.1 Score=24.63 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=37.5
Q ss_pred hhccCCCeeEEEEeeC-------CCCeEEEEeCCHHHHHHHHHHhCCceecC-----cEEEEEEccCc
Q psy17274 4 LTGVYGDVLRVKILYN-------KKDSALIQMAESHQAHLAMMHMDKLRVFG-----KQMRVMISKHQ 59 (184)
Q Consensus 4 lF~~yG~V~~v~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~s~~~ 59 (184)
..+.+..+........ ...-|+|.|.+.+++..-.+.++|..|.+ .+-.|++|-.+
T Consensus 21 ~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 21 HLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQ 88 (91)
T ss_dssp HHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSSC
T ss_pred HhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCCC
Confidence 3444555544444331 23569999999999999999999998853 23346666543
No 401
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.24 E-value=3.9 Score=23.84 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEEcc
Q psy17274 10 DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57 (184)
Q Consensus 10 ~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~s~ 57 (184)
.|-+|.+ ...+.||+-.... |..+++.|++..+.|+++.++.++
T Consensus 32 ~IG~I~i---~d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITI---MDNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEE---CSSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEE---eCCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3556666 3578999887654 678888999999999999988654
No 402
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=67.17 E-value=13 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=29.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecC-----cEEEEEEcc
Q psy17274 21 KDSALIQMAESHQAHLAMMHMDKLRVFG-----KQMRVMISK 57 (184)
Q Consensus 21 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~s~ 57 (184)
-.-|+|.|.+.++...-.+.++|..|-+ -+-.|++|.
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 3569999999999999999999998854 234466654
No 403
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=65.72 E-value=5.5 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=14.3
Q ss_pred CCeeEEEEeeCCCCeEEEEeCCH
Q psy17274 9 GDVLRVKILYNKKDSALIQMAES 31 (184)
Q Consensus 9 G~V~~v~~~~~~~g~afV~f~~~ 31 (184)
|.|.+|. ...|.|+|.|.|.
T Consensus 32 gtI~~V~---~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN---ILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEE---TTTTEEEEEETTT
T ss_pred eEEEEEc---cCCcEEEEEEccC
Confidence 5565554 3579999999874
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.59 E-value=10 Score=26.24 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=33.5
Q ss_pred EEEEeCCCC---------CCCHHHHHHHH--HhcCCceeEEEEccCC---CceEEEEeCC-HHHHHHHHH
Q psy17274 102 TLHLSNIPA---------SVTEDELKEAF--TEKGFTVKGFKFFPKD---RKMALLQLDS-IEEAITALI 156 (184)
Q Consensus 102 ~l~v~nlp~---------~~t~~~l~~~F--~~~G~~v~~v~v~~~~---~~~afV~f~~-~~~A~~Ai~ 156 (184)
...|.|+|. ..+..+|++.| +.|. ++ +|+.+-.. .|+|.|+|.+ -.-=..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~-p~-kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFN-PT-RVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCC-CS-EEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCC-Cc-eeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 466778876 24568999977 8887 33 34443322 5789999995 333344444
No 405
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=62.57 E-value=29 Score=22.60 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCceeEEEEc-cCCCceEEEEeCCHHHHHHHHHHhcCeec
Q psy17274 114 EDELKEAFTEKGFTVKGFKFF-PKDRKMALLQLDSIEEAITALIQMHNHQL 163 (184)
Q Consensus 114 ~~~l~~~F~~~G~~v~~v~v~-~~~~~~afV~f~~~~~A~~Ai~~lng~~i 163 (184)
-..+.+.+...|..|..+... ...+....+++++.+.|.+++.. .|+.+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 346777888888777665544 33456667899999999999886 55554
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=62.13 E-value=14 Score=22.57 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=27.7
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
|.+|.+...-+||-||++...++...+++...|.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5666655457899999999999999999877764
No 407
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.76 E-value=4.9 Score=23.04 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=14.6
Q ss_pred CCeeEEEEeeCCCCeEEEEeCCH
Q psy17274 9 GDVLRVKILYNKKDSALIQMAES 31 (184)
Q Consensus 9 G~V~~v~~~~~~~g~afV~f~~~ 31 (184)
|.|.+|. ..++.|+|.|+|.
T Consensus 28 GtV~kV~---~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD---SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE---TTTTEEEEEETTT
T ss_pred eEEEEEe---cCCcEEEEEEccC
Confidence 5666654 3578999999874
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.58 E-value=29 Score=21.22 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 99 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.++-+.+-|+|..+-..++--.....|.+ -.+..+ .|.|.|.|.+.++...|+..|-++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgye-fycdyi---dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYE-FYCDYI---DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCC-EEEEEC---SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCee-Eeeeee---cCeeEEEecCChHHHHHHHHHHhc
Confidence 45668899999988888887777888843 245443 378999999999999999887544
No 409
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=58.03 E-value=5.7 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=15.3
Q ss_pred CCCeeEEEEeeCCCCeEEEEeCCH
Q psy17274 8 YGDVLRVKILYNKKDSALIQMAES 31 (184)
Q Consensus 8 yG~V~~v~~~~~~~g~afV~f~~~ 31 (184)
.|.|.+|. ..++.|+|.|.|.
T Consensus 44 LGTI~kV~---~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVD---SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEE---TTTTEEEEEETTS
T ss_pred eEEEEEec---cCCCEEEEEEcCC
Confidence 36676654 3678999999875
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.15 E-value=13 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCcEEEEEE
Q psy17274 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMI 55 (184)
Q Consensus 21 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 55 (184)
.|+|+|.|.+.++-..|++.|-+. ...+|.++.
T Consensus 46 dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 46 DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 588999999999999999876332 234555543
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=53.06 E-value=2.9 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCceeEEEEccCCCceEEEEeC
Q psy17274 115 DELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146 (184)
Q Consensus 115 ~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~ 146 (184)
+|+.++|...| .|+.+...+|||||+.+
T Consensus 2 ~~~~~l~~~~G----~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAG----ICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEE----EEEEEETTTTEEEEEEE
T ss_pred Cccccccccee----EEEEEECCCCeeEEeeC
Confidence 45667777778 45556567999999976
No 412
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=51.54 E-value=18 Score=22.78 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=28.4
Q ss_pred CeeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 10 DVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 10 ~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
.|.+|-....-+||-|||=.+..+...|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 47787665567999999999999999999766443
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.19 E-value=38 Score=20.44 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEcc--CCCceEEEEeCCHHHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFP--KDRKMALLQLDSIEEAITALI 156 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~--~~~~~afV~f~~~~~A~~Ai~ 156 (184)
-++.-++...+..++++.++. ||..|..|..+. ++..-|+|+...-.+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 456667889999999999877 676777776654 234579999988777776543
No 414
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=50.98 E-value=9.2 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=14.1
Q ss_pred CCeeEEEEeeCCCCeEEEEeCCH
Q psy17274 9 GDVLRVKILYNKKDSALIQMAES 31 (184)
Q Consensus 9 G~V~~v~~~~~~~g~afV~f~~~ 31 (184)
|.|.+|. ..++.++|.|.|.
T Consensus 22 GtI~~V~---~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVD---SAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEE---TTTTEEEEEETTS
T ss_pred EEEEEEe---cCCCEEEEEEcCC
Confidence 5665554 3567999999874
No 415
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.82 E-value=3.8 Score=23.13 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.9
Q ss_pred CCCeEEEEeCCH
Q psy17274 20 KKDSALIQMAES 31 (184)
Q Consensus 20 ~~g~afV~f~~~ 31 (184)
.++.|+|.|.|.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 578899999874
No 416
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.08 E-value=46 Score=20.15 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=28.1
Q ss_pred cCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHhcCe
Q psy17274 124 KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161 (184)
Q Consensus 124 ~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~lng~ 161 (184)
.|..|..+.+...-+||-||+++..++.-.++....|.
T Consensus 36 ~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 36 EQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 45456666554345899999999999988888877664
No 417
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=43.77 E-value=30 Score=23.06 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=27.9
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
|.+|.+...-+||-||++...++...+++.+.|.
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5666654456899999999999999999888875
No 418
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=36.52 E-value=55 Score=18.04 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=41.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCCHHHHHHHHHHh
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~~~~A~~Ai~~l 158 (184)
.++.|.++.-.--...+...+.. . .|..+.+.. ..+.+.|+|.+.++-..++..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~-gv~~~~v~~-~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-A-GAKVEKVDL-NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-T-TCEEEEECS-SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-C-CcEEEEEEc-cCCEEEEEECCHHHHHHHHHHc
Confidence 46889999877778889999988 6 688887753 5677888888666666777653
No 419
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=33.59 E-value=22 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=24.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEE
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKF 133 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v 133 (184)
....|+|||+.++..-|..++.... .+....+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~-~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAP-VVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGG-GEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccC-CccEEEE
Confidence 4678999999999999999997655 4544443
No 420
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=33.39 E-value=50 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=24.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceeEEEE
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKGFTVKGFKF 133 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v 133 (184)
..+.|+|+|+.++..-|..++.. + .+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~-~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-G-RFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-C-CEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-C-CCCEEEE
Confidence 45789999999999999999987 6 5554433
No 421
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=32.43 E-value=87 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEE
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGF 131 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v 131 (184)
+|-+.+++...+...|.+++..+|..+..|
T Consensus 51 VlDl~~l~~~~dl~~L~~~l~~~gl~~vGV 80 (120)
T 3ghf_A 51 VINVSGLESPVNWPELHKIVTSTGLRIIGV 80 (120)
T ss_dssp EEEEEECCSSCCHHHHHHHHHTTTCEEEEE
T ss_pred EEEccccCChHHHHHHHHHHHHcCCEEEEE
Confidence 466788887788999999999999444333
No 422
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=31.66 E-value=31 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.0
Q ss_pred CCCeEEEEeCCH
Q psy17274 20 KKDSALIQMAES 31 (184)
Q Consensus 20 ~~g~afV~f~~~ 31 (184)
.+..|+|+|.|.
T Consensus 40 ~~~~ClV~FeD~ 51 (69)
T 2xk0_A 40 TSDQYLIRFDDQ 51 (69)
T ss_dssp CSSCEEEEETTC
T ss_pred CCceEEEEecCC
Confidence 578899999875
No 423
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=36.84 E-value=11 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhC
Q psy17274 20 KKDSALIQMAESHQAHLAMMHMD 42 (184)
Q Consensus 20 ~~g~afV~f~~~~~A~~Ai~~l~ 42 (184)
+.|+|+|.|.+.++-..|++.|-
T Consensus 76 kegqamirfqnsdeqrlaiqkll 98 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLL 98 (137)
Confidence 46999999999999999997663
No 424
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=30.11 E-value=39 Score=20.54 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.6
Q ss_pred EEEEccCCCceEEEE
Q psy17274 130 GFKFFPKDRKMALLQ 144 (184)
Q Consensus 130 ~v~v~~~~~~~afV~ 144 (184)
.|+.+...||||||+
T Consensus 12 ~VKWFn~~KGfGFI~ 26 (90)
T 3ulj_A 12 HCKWFNVRMGFGFIS 26 (90)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeeCCCCeEEeE
Confidence 366776778999996
No 425
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.02 E-value=96 Score=18.57 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=37.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCceeEEEEccCC--CceEEEEeCCHHHHHHH
Q psy17274 103 LHLSNIPASVTEDELKEAFTE-KGFTVKGFKFFPKD--RKMALLQLDSIEEAITA 154 (184)
Q Consensus 103 l~v~nlp~~~t~~~l~~~F~~-~G~~v~~v~v~~~~--~~~afV~f~~~~~A~~A 154 (184)
-++..++...+..++++.++. ||+.|..|...... ..-|+|+...-.+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHH
Confidence 456667899999999999876 68778777665433 35699999876665543
No 426
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=28.87 E-value=53 Score=23.26 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=27.9
Q ss_pred eeEEEEeeCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17274 11 VLRVKILYNKKDSALIQMAESHQAHLAMMHMDKL 44 (184)
Q Consensus 11 V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 44 (184)
|.+|-....-+||-|||=.+..+...|++.+.+.
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 6776544356899999999999999999888774
No 427
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.02 E-value=66 Score=27.10 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=27.9
Q ss_pred cCCCeeEEEEee----CCCCeEEEEeCCHHHHHHHHHHhC
Q psy17274 7 VYGDVLRVKILY----NKKDSALIQMAESHQAHLAMMHMD 42 (184)
Q Consensus 7 ~yG~V~~v~~~~----~~~g~afV~f~~~~~A~~Ai~~l~ 42 (184)
.+|-|+++.+-. ....++++.|.+.++|..|+..+-
T Consensus 370 TLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 370 TLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 588999887543 234668999999999999987763
No 428
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.70 E-value=28 Score=25.46 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=24.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEE
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKF 133 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v 133 (184)
...|+|+|+.++...|..+++..+ .+....+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~-~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIH-CIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGG-GEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCC-ChheEEE
Confidence 458899999999999999998766 5544443
No 429
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=24.65 E-value=86 Score=22.71 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=20.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKG 125 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G 125 (184)
..+.|+|+|+.++...+..++....
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~ 115 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTD 115 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGG
T ss_pred ceEEEECCCCCccHHHHHHHHhcCC
Confidence 3588999999999988888886543
No 430
>3bam_A R. bamhi, protein (restriction endonuclease bamhi); hydrolase, phosphodiesterase, complex (endonuclease/DNA), protein/DNA; HET: DNA; 1.80A {Bacillus amyloliquefaciens} SCOP: c.52.1.3 PDB: 1bhm_A* 1bam_A* 2bam_A* 1esg_A*
Probab=24.55 E-value=88 Score=21.84 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=26.8
Q ss_pred ceeEEEEc-cCCCceEE-EEeCC--HHHHHHHHHHhcCeecCC
Q psy17274 127 TVKGFKFF-PKDRKMAL-LQLDS--IEEAITALIQMHNHQLSE 165 (184)
Q Consensus 127 ~v~~v~v~-~~~~~~af-V~f~~--~~~A~~Ai~~lng~~i~g 165 (184)
+|+-++.+ .++.++.| |+|++ .+++.+|+..|..-...|
T Consensus 92 PIDA~k~i~~~~~~~~~~~EwETGNIsSShRAiNKm~lg~~~g 134 (213)
T 3bam_A 92 PIDVYKEFIENSELKRVGMEFETGNISSAHRSMNKLLLGLKHG 134 (213)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCSBHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEcccccCCceEEEEEecCccchHHHHHHHHHHHhhhc
Confidence 56655555 44556665 68885 899999998876655544
No 431
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=24.45 E-value=69 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=27.0
Q ss_pred hhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHHH
Q psy17274 3 SLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMH 40 (184)
Q Consensus 3 ~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~~ 40 (184)
++..+||+|.++++ .+.-.|...+++.+...+..
T Consensus 40 ~l~~kYG~i~~~~~----g~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 40 QNFQKYGPIYREKL----GNVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHCSEEEEEE----TTEEEEEECCHHHHHHHHHT
T ss_pred HHHHHcCceeeccC----CCCCEEEEcCHHHHHHHHHh
Confidence 56788999988876 25567889999999988743
No 432
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.09 E-value=74 Score=25.83 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=25.0
Q ss_pred hhh--ccCCCeeEEEEee--CC--CCeEEEEeCCHHHHHHHHH
Q psy17274 3 SLT--GVYGDVLRVKILY--NK--KDSALIQMAESHQAHLAMM 39 (184)
Q Consensus 3 ~lF--~~yG~V~~v~~~~--~~--~g~afV~f~~~~~A~~Ai~ 39 (184)
.|| +.+|-|+++.+-- .. ...+++.|.+.++|..|++
T Consensus 220 ~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 220 GMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp HHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred hhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 445 3689999987543 22 2457899999888766443
No 433
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=22.91 E-value=83 Score=18.17 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=11.5
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=++
T Consensus 7 Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 7 ITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEETTTTEEEEEESS
T ss_pred EEEEECCCCeEEEecCC
Confidence 44555678888887654
No 434
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.90 E-value=66 Score=23.25 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTEKG 125 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~~G 125 (184)
..+.|+|+|+.++..-|..++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 4578999999999999999887643
No 435
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.77 E-value=65 Score=18.84 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=12.0
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=++
T Consensus 13 Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 13 VKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEETTTTEEEEEEGG
T ss_pred EEEEECCCCcEEEecCC
Confidence 55555678999998653
No 436
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=22.69 E-value=67 Score=18.44 Aligned_cols=17 Identities=12% Similarity=0.483 Sum_probs=11.9
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+-++
T Consensus 6 Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 6 VKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCEEEEecCC
Confidence 44555678999998654
No 437
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.13 E-value=89 Score=18.07 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.6
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=++
T Consensus 5 Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 5 VVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEecCC
Confidence 55555679999998764
No 438
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.61 E-value=62 Score=16.00 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHhc
Q psy17274 110 ASVTEDELKEAFTEK 124 (184)
Q Consensus 110 ~~~t~~~l~~~F~~~ 124 (184)
..+|.++|+.+|..-
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 456899999999764
No 439
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=21.50 E-value=71 Score=17.82 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.0
Q ss_pred ceEEEEeCCHHHHHHHHH
Q psy17274 139 KMALLQLDSIEEAITALI 156 (184)
Q Consensus 139 ~~afV~f~~~~~A~~Ai~ 156 (184)
..-+=.|+++|+|..|-+
T Consensus 27 r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 27 RVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEEEESSHHHHHHHHH
T ss_pred EEEeeeCCCHHHHHHHHH
Confidence 444569999999998754
No 440
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.50 E-value=1e+02 Score=16.32 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=38.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCceeEEEEccCCCceEEEEeCC---HHHHHHHHHH
Q psy17274 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS---IEEAITALIQ 157 (184)
Q Consensus 102 ~l~v~nlp~~~t~~~l~~~F~~~G~~v~~v~v~~~~~~~afV~f~~---~~~A~~Ai~~ 157 (184)
++.|.++.-.-....+...+.... .|..+.+.. ..+.+.|+|.. .++-.+++..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~-gv~~~~v~~-~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVP-GVQSCQVNF-ALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTST-TEEEEEEET-TTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCC-CeEEEEEEe-cCCEEEEEECCCCCHHHHHHHHHH
Confidence 577888887667788888888886 687787763 56778888853 4445555553
No 441
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.32 E-value=76 Score=17.75 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=12.2
Q ss_pred EEEccCCCceEEEEeCC
Q psy17274 131 FKFFPKDRKMALLQLDS 147 (184)
Q Consensus 131 v~v~~~~~~~afV~f~~ 147 (184)
|+.+...+|+|||+=++
T Consensus 5 Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 5 VKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCEEEEecCC
Confidence 44555678999998664
No 442
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=20.58 E-value=90 Score=24.28 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.5
Q ss_pred hhhhccCCCeeEEEEeeCCCCeEEEEeCCHHHHHHHHH
Q psy17274 2 FSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMM 39 (184)
Q Consensus 2 ~~lF~~yG~V~~v~~~~~~~g~afV~f~~~~~A~~Ai~ 39 (184)
.++..+||+|-++++ .|.-+|...+++.+..++.
T Consensus 38 ~~~~~kYG~i~~~~~----~~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 38 ENAYEKYGPVFSFTM----VGKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp HHHHHHHCSEEEEEE----TTEEEEEECSHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEE----CCccEEEEeCHHHHHHHHh
Confidence 356788999988876 3667788889988888774
No 443
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.28 E-value=1e+02 Score=23.78 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=19.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHh
Q psy17274 101 PTLHLSNIPASVTEDELKEAFTE 123 (184)
Q Consensus 101 ~~l~v~nlp~~~t~~~l~~~F~~ 123 (184)
+...|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999999888874
No 444
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.25 E-value=45 Score=19.34 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.5
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCeecCC
Q psy17274 138 RKMALLQLDSIEEAITALIQMHNHQLSE 165 (184)
Q Consensus 138 ~~~afV~f~~~~~A~~Ai~~lng~~i~g 165 (184)
+---|.+.+|.++|..++..|+-...++
T Consensus 34 k~rif~~~~d~~eA~e~~~~lqa~~~G~ 61 (71)
T 1gh9_A 34 DRRIFGRADDFEEASELVRKLQEEKYGS 61 (71)
T ss_dssp SSSCBSCCSSHHHHHHHHHHHSSCCCSC
T ss_pred eEEEEEecCCHHHHHHHHHHHHhhhcCc
Confidence 3445677899999999999999877655
No 445
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=20.01 E-value=89 Score=20.90 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=13.4
Q ss_pred EEEEccCCCceEEEEeCC
Q psy17274 130 GFKFFPKDRKMALLQLDS 147 (184)
Q Consensus 130 ~v~v~~~~~~~afV~f~~ 147 (184)
.|+.+...+|||||+-++
T Consensus 66 tVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 66 VCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEETTTTEEEEEESS
T ss_pred EEEEEeCCCCeEEeccCC
Confidence 455565679999998765
Done!