RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17274
(184 letters)
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 85.6 bits (211), Expect = 6e-23
Identities = 61/88 (69%), Positives = 71/88 (80%)
Query: 91 KNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEE 150
KNFQNI+PPS TLHLSNIP SV+E++LK F+ G VKGFKFF KDRKMAL+Q+ S+EE
Sbjct: 1 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE 60
Query: 151 AITALIQMHNHQLSEQSHLRVSFSKSNI 178
A+ ALI +HNH L E HLRVSFSKS I
Sbjct: 61 AVQALIDLHNHDLGENHHLRVSFSKSTI 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 81.3 bits (200), Expect = 4e-21
Identities = 59/90 (65%), Positives = 74/90 (82%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+F L GVYGDV RVKIL+NKK++AL+QMA+ +QA LAM H++ ++ GK +R+ +SKHQ
Sbjct: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
Query: 61 VQLPKEGQPDAGLTKDYTASPLHRFKKPGS 90
VQLP+EGQ D GLTKDY SPLHRFKKPGS
Sbjct: 80 VQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 62.0 bits (150), Expect = 1e-13
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 99 PSPTLHL--SNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
SP L + N+ VT D L + F++ G +K F ++ ALLQ A A +
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 63
Query: 157 QMHNHQLSEQS-HLRVSFSKSNIQDIRDN 184
+ + LR+ FSK +++ N
Sbjct: 64 SLDGQNIYNACCTLRIDFSKLTSLNVKYN 92
Score = 42.7 bits (100), Expect = 2e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 1 MFSLTGVYGDVLRVKILYNK-KDSALIQMAESHQAHLAMMHMD--KLRVFGKQMRVMISK 57
+ + +G VL++ + AL+Q A+ A A + +D + +R+ SK
Sbjct: 24 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 83
Query: 58 HQAVQLPKEGQPDAGLTKDYTASPL 82
++ + ++DYT L
Sbjct: 84 LTSLNVKYNNDK----SRDYTRPDL 104
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 56.0 bits (134), Expect = 2e-11
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148
GS + SP +H+ + SV E +L EA + G ++ AL++ ++I
Sbjct: 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY--VMMMPFKRQALVEFENI 61
Query: 149 EEAITALIQMHNHQLSEQSH-LRVSFSKS 176
+ A + + + ++S S
Sbjct: 62 DSAKECVTFAADVPVYIAGQQAFFNYSTS 90
Score = 32.5 bits (73), Expect = 0.008
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 17 LYNKKDSALIQMAESHQAHLAM--MHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAG 72
+ K AL++ A + + + G+Q S + + P P +G
Sbjct: 47 MMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 53.1 bits (127), Expect = 2e-10
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
P+ L + + + + L F G K A +Q +S++ A A +
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR--TIDHVKGDSFAYIQYESLDAAQAACAK 72
Query: 158 MHNHQLSEQSH-LRVSFSKSN 177
M L LRV F+KS
Sbjct: 73 MRGFPLGGPDRRLRVDFAKSG 93
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 52.7 bits (126), Expect = 3e-10
Identities = 11/91 (12%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 91 KNFQNIY----PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD 146
F+++ P + T++ I + +T+ +++ F+ G ++ ++ + ++
Sbjct: 5 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--IRVFPEKGYSFVRFS 62
Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
+ E A A++ ++ + ++ + K +
Sbjct: 63 THESAAHAIVSVNGTTIEGH-VVKCYWGKES 92
Score = 32.2 bits (73), Expect = 0.009
Identities = 6/52 (11%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 8 YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQ 59
+G ++ +++ K + ++ + A A++ ++ + G ++ K
Sbjct: 42 FGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 47.9 bits (113), Expect = 1e-08
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
PP+ L L+N+P E L + K + P +A ++ + ++ A
Sbjct: 6 PPNQILFLTNLPEETNEMMLSM-LFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA 64
Query: 158 MHNHQLSEQSHLRVSFSK 175
+ +++ ++++F+K
Sbjct: 65 LQGFKITPTHAMKITFAK 82
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 48.0 bits (114), Expect = 1e-08
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 94 QNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDRKMALLQLDSIE 149
+ + S TL++ N+ TE+++ E F++ G K K ++ S
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 150 EAITALIQMHNHQLSEQSHLRVSFSKS 176
+A A+ ++ +L ++ +R +
Sbjct: 61 DAENAMRYINGTRLDDR-IIRTDWDAG 86
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 46.6 bits (110), Expect = 4e-08
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
+++ N+P + ++++ F + G K A ++ + +A A+
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 71
Query: 157 QMHNHQLSEQSHLRVSFSKSN 177
+ LRV F +S
Sbjct: 72 GRDGYDYDGY-RLRVEFPRSG 91
Score = 29.3 bits (65), Expect = 0.085
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1 MFSLTGVYGDVLRVKILYNK--KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
+ + YG + + + + A ++ + A A+ D G ++RV +
Sbjct: 31 IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 90
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 46.3 bits (109), Expect = 7e-08
Identities = 7/87 (8%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 98 PPSPTLHLS--NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
+ +L ++ + V+ ++L + + P ++ + + + EE+ A
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEK--CGLVDALLMPPNKPYSFARYRTTEESKRAY 73
Query: 156 IQMHNHQLSEQSHLRVSFSKSNIQDIR 182
+ ++ ++ + +++ + ++ ++
Sbjct: 74 VTLNGKEVVDDLGQKITLYLNFVEKVQ 100
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 45.3 bits (107), Expect = 1e-07
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFT-----VKGFKFFPKDRKMALLQLDSIEEAI 152
+ + + NIP + E++E F+ G K R + + ++A
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 153 TALIQMHNHQLSEQSHLRVSFSKSNI 178
A + + L + ++ S +
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADSEV 91
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 45.4 bits (107), Expect = 1e-07
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
T+++ + V+E L E F + G V + + ++ S E+A
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 154 ALIQMHNHQLSEQSHLRVSFSKSNIQDI 181
A+ M +L + +RV+ + ++ +++
Sbjct: 67 AIKIMDMIKLYGK-PIRVNKASAHNKNL 93
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 45.0 bits (106), Expect = 1e-07
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 103 LHLSNIPASVTEDELKEAFTEKG-------FTVKGFKFFPKDRKMALLQLDSIEEAITAL 155
L + N+ S TE+ LK F++ G K ++ E+A AL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
Q+ H + + L V S+
Sbjct: 61 KQLQGHTV-DGHKLEVRISER 80
Score = 27.7 bits (61), Expect = 0.27
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
++ + QA A+ + V G ++ V IS+
Sbjct: 43 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 79
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 44.6 bits (105), Expect = 2e-07
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI 148
G K F L + N+P +TE+E+++ F + G F KD+ ++L++
Sbjct: 1 GEKTFTQ----RSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDKGFGFIRLETR 54
Query: 149 EEAITALIQMHNHQLSEQSHLRVSFSKSN 177
A A +++ N L + LRV F+ +
Sbjct: 55 TLAEIAKVELDNMPLRGK-QLRVRFACHS 82
Score = 29.2 bits (65), Expect = 0.093
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 18 YNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+ K I++ A +A + +D + + GKQ+RV + H A
Sbjct: 41 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 44.3 bits (104), Expect = 3e-07
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
P+ L + + TE +L+E F++ G + + R A + +++++A
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 154 ALIQMHNHQLSEQSHLRV 171
A + + +L + +RV
Sbjct: 67 AKERANGMELDGR-RIRV 83
Score = 25.0 bits (54), Expect = 2.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 26 IQMAESHQAHLAMMHMDKLRVFGKQMRV 53
+ A A + + + G+++RV
Sbjct: 56 VYFENVDDAKEAKERANGMELDGRRIRV 83
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 45.0 bits (106), Expect = 3e-07
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRKMALLQLDSIEEAITALI 156
+ L++ N+P +T +E+ + F + G P+ R A + + I +A A
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 157 QMHNHQLSEQSHLRVSFSKSN 177
+ + + +L V + +N
Sbjct: 65 HLSGFNVCNR-YLVVLYYNAN 84
Score = 30.0 bits (67), Expect = 0.059
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1 MFSLTGVYGDVLRVKILYNK--KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
M+ + G YG + ++++ + +A + + A A H+ V + + V+
Sbjct: 24 MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN 82
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 44.3 bits (104), Expect = 3e-07
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFT--VKGFKFFPKDRKMALLQLDSIEEAITALIQMH 159
+ + N+ S+ L + F+ G K + + ++ E A A+ +M+
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 160 NHQLSEQSHLRVSFSKS 176
L+++ + V KS
Sbjct: 70 GMLLNDR-KVFVGRFKS 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 44.3 bits (104), Expect = 3e-07
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTE-----KGFTVKGFKFFPKDRKMALLQLDSIEEAIT 153
P+ T++++N+ + +DELK++ K R A + + A
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 154 ALIQMHNHQLSEQSHLRVSFSKSN 177
AL M ++ +R+ ++K++
Sbjct: 62 ALRSMQGFPFYDK-PMRIQYAKTD 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 44.3 bits (104), Expect = 3e-07
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKG----FTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
L +++I EDE++E F + G + + + AL++ ++ ++A+ A
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 158 MHNHQLSEQSHLRVSFSKS 176
++ ++ Q ++V +
Sbjct: 69 LNGAEIMGQ-TIQVDWCFV 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.3 bits (104), Expect = 4e-07
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 86 KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFP----KDRKMA 141
+ G+ Q P L + ++P + +L + F G V F +
Sbjct: 4 QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 63
Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
+ D+ A A+ M+ Q+ + L+V +S
Sbjct: 64 FVSYDNPVSAQAAIQSMNGFQIGMK-RLKVQLKRS 97
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 43.8 bits (103), Expect = 4e-07
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
L ++ +P +T+ EL F G A + S ++ A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 158 MHNHQLSEQSHLRVSFSK 175
++ + + L+VS+++
Sbjct: 64 LNGITVRNK-RLKVSYAR 80
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 43.8 bits (103), Expect = 4e-07
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQ 157
L+++N+P ++T+D+L F + G V+ K A ++ + EEA A+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 158 MHNHQLSEQSH-LRVSF 173
++N S L V
Sbjct: 68 LNNVIPEGGSQPLSVRL 84
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 43.6 bits (102), Expect = 5e-07
Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
L ++ +P ++T++E + F G K + ++A A+
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 158 MHNHQLSEQSHLRVSFSK 175
++ +L + ++VS+++
Sbjct: 64 LNGLRLQTK-TIKVSYAR 80
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 43.5 bits (102), Expect = 6e-07
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQ 157
L++S +P ++T+ EL++ F++ G + + + ++ D EA A+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 158 MHNHQLSEQSH-LRVSFS 174
++ + S + + V F+
Sbjct: 68 LNGQKPSGATEPITVKFA 85
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.5 bits (102), Expect = 6e-07
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
+ T+ ++N+ E +L+E F G + + K + A + E+A
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 154 ALIQMHNHQLSEQSHLRVSFSK 175
A+ + L V ++K
Sbjct: 66 AIAGVSGFGYDHL-ILNVEWAK 86
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 43.0 bits (101), Expect = 6e-07
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKG---FKFFPKDRKMALLQLDSIEEAITALIQMH 159
L +SN+ V++ +++E F E G K + + A + + +A+ A+ Q +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 160 NHQLSEQSHLRVSFSKS 176
L + + + S
Sbjct: 63 GVPLDGRP-MNIQLVTS 78
Score = 24.9 bits (54), Expect = 2.6
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 8 YGDVLRVKILYNKKDSAL----IQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56
+G + + + Y++ +L + A AM + + + G+ M + +
Sbjct: 24 FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 76
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 42.7 bits (100), Expect = 1e-06
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITAL 155
LH+SNIP + +L++ F + G + F + + + ++ +A A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
++H + + + V+ + +
Sbjct: 69 EKLHGTVVEGR-KIEVNNATA 88
Score = 24.6 bits (53), Expect = 4.3
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 18 YNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
K + S A A + V G+++ V +
Sbjct: 48 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 87
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 42.2 bits (99), Expect = 1e-06
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKG----FTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
+L++ ++ VTE L E F+ G V + A + +A AL
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 158 MHNHQLSEQSHLRVSFSKSN 177
M+ + + +R+ +S+ +
Sbjct: 62 MNFDVIKGK-PVRIMWSQRD 80
Score = 28.3 bits (63), Expect = 0.13
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 8 YGDVLRVKILYNKKDS-----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
G +L +++ + A + + A A+ M+ + GK +R+M S+
Sbjct: 24 AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 42.1 bits (98), Expect = 2e-06
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTV----KGFKFFPKDRKMALLQLDSIEEAITALIQ 157
TL ++N P S T+ +++ + F R+ A + + S E+A + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 158 MHNHQLSEQSHLRVSFSK 175
++ ++ E L S
Sbjct: 63 LNGLKI-EGYTLVTKVSN 79
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 42.8 bits (100), Expect = 2e-06
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAIT 153
S L + N+ + +E++L++ F+ G + + A + E A+
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 154 ALIQMHNHQLSEQSHLRVSFSKS 176
A ++ + L V S
Sbjct: 66 AYAEVDGQVFQGR-MLHVLPSTI 87
Score = 25.8 bits (56), Expect = 1.6
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 26 IQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAG 72
+ A A +D G+ + V+ S K+ +G
Sbjct: 55 VTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST------IKKEASQSG 95
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 41.2 bits (96), Expect = 4e-06
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
L++ N+ S +E+ +++ F + K R A + + E+A+ A+ ++
Sbjct: 10 ILYVRNLMLSTSEEMIEKEF-NNIKPGAVER-VKKIRDYAFVHFSNREDAVEAMKALNGK 67
Query: 162 QLSEQSHLRVSFSK 175
L + V+ +K
Sbjct: 68 VLDGS-PIEVTLAK 80
Score = 27.7 bits (61), Expect = 0.30
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 20 KKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
+D A + + A AM ++ + G + V ++K
Sbjct: 43 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 41.2 bits (96), Expect = 4e-06
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD--RKMALLQLDSIEEAITAL 155
TL++ N+ VTE + + F++ G ++ +A AL
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAAL 65
Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
M+ ++ + ++V+++ +
Sbjct: 66 AAMNGRKILGK-EVKVNWATT 85
Score = 25.4 bits (55), Expect = 1.7
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDS---ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
+ L G K++ + ++ E A A+ M+ ++ GK+++V +
Sbjct: 25 ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 41.2 bits (96), Expect = 4e-06
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
+ TL N+ ++TEDELKE F E ++ K + +A ++ S +A L +
Sbjct: 15 AARTLLAKNLSFNITEDELKEVF-EDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 159 HNHQLSEQSHLRVSFSKS 176
++ + + + ++
Sbjct: 74 QGAEIDGR-SVSLYYTGE 90
Score = 26.2 bits (57), Expect = 1.1
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 14 VKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQP 69
V K A I+ A + + G+ + + + K G
Sbjct: 46 VSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG------EKGGTR 95
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 40.5 bits (94), Expect = 7e-06
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFF-----PKDRKMALLQLDSIEEAITALIQ 157
+ + N+ + E L + F+ G ++ K + A + S + + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 158 MHNHQLSEQSHLRVSFSKS 176
M+ L + + VS++
Sbjct: 61 MNGQYLCNR-PITVSYAFK 78
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.8 bits (92), Expect = 1e-05
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
PS LH+ +P VTE E+ F K + A L+L + E AIT +
Sbjct: 6 APSRVLHIRKLPGEVTETEVIALG--LPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 158 MHNHQLSEQSH-LRVSFSKS 176
++ + + +S
Sbjct: 64 YSAVTPHLRNQPIYIQYSNH 83
Score = 29.4 bits (65), Expect = 0.085
Identities = 3/37 (8%), Positives = 13/37 (35%)
Query: 26 IQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQ 62
+ E+ + + + + + S H+ ++
Sbjct: 51 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 87
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 38.9 bits (90), Expect = 3e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
L++ + V + L AF G + R A ++ + E+A A+
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 158 MHNHQLSEQSHLRVSFSK 175
M+ +L + +RV+ +K
Sbjct: 67 MNESELFGR-TIRVNLAK 83
Score = 25.4 bits (55), Expect = 1.9
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 26 IQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
++ + A A+ +M++ +FG+ +RV ++K
Sbjct: 52 VEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 38.8 bits (90), Expect = 3e-05
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 103 LHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
L + +P + +D++KE T K F + + A + I A+ +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 159 HNHQLSEQSHLRVSFSKSN 177
+ QL ++ L V +
Sbjct: 64 NGMQLGDK-KLLVQRASVG 81
Score = 28.1 bits (62), Expect = 0.23
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 21 KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
K A + + + A+ ++ +++ K++ V + A
Sbjct: 43 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 82
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.3 bits (91), Expect = 3e-05
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLD---SIEEAITAL 155
P T L N+P VTE+ +KE F + P + + +++ +
Sbjct: 14 PPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73
Query: 156 IQMHNHQLSEQSHLRVSFSKS 176
+ ++ L + +RV +
Sbjct: 74 LSLNEESLGNK-RIRVDVADQ 93
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 4e-05
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 86 KKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTE----KGFTVKGFKFFPKDRKMA 141
K P ++ N P+ L+L N+ VTE +L F KG ++ + R A
Sbjct: 5 KIPMFSSY-NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 142 LLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
+ + E A AL ++ ++L + L + F K+
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGK-ILVIEFGKN 97
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 38.1 bits (88), Expect = 6e-05
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD------RKMALLQLDSIEEAITAL 155
L + IP +E+ E + V + R A ++ +S A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 156 IQMHNHQLSEQSH-LRVSFSK 175
++ ++ H + V +++
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAE 83
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 38.7 bits (89), Expect = 7e-05
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 62 QLPKEGQPDAGLTKDYTASPLHRFKKPGSKNFQNIYPPSP-TLHLSNIPASVTEDELKEA 120
Q+P Q D + ++ N P L ++ IP +V E +L++
Sbjct: 3 QIPLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQL 62
Query: 121 F----TEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
F + + + + R ++ S A A+ ++ + + L+V+ + S
Sbjct: 63 FERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK-RLKVALAAS 121
Query: 177 NIQ 179
Q
Sbjct: 122 GHQ 124
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.8 bits (87), Expect = 8e-05
Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 99 PSPTLHLSNIP-ASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
+H+ + +L + G + + +A
Sbjct: 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYT 66
Query: 158 MHNHQLSEQSHLRVSFSKSN 177
+ + +RV S+
Sbjct: 67 TTPALVFGK-PVRVHLSQKY 85
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 37.9 bits (88), Expect = 9e-05
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 89 GSKNFQNIYPPSPTLHLSNIPA-SVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDS 147
GS + + + + N+ V + +++ F++ G + G A +Q +
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG-KIVGCSVHK---GFAFVQYVN 59
Query: 148 IEEAITALIQMHNHQLSEQSHLRVSFSKS 176
A A+ ++ Q L ++ +
Sbjct: 60 ERNARAAVAGEDGRMIAGQ-VLDINLAAE 87
Score = 32.1 bits (73), Expect = 0.009
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 8 YGDVLRVKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEG 67
YG ++ + A +Q A A+ D + G+ + + ++
Sbjct: 40 YGKIVGCSVHKGF---AFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK---VNRS 93
Query: 68 QPDAG 72
P +G
Sbjct: 94 GPSSG 98
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 37.3 bits (86), Expect = 9e-05
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
TL++ +T L+ AF+ F R A + + +E A A+ ++
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSP--FGNIIDLSMDPPRNCAFVTYEKMESADQAVAEL 59
Query: 159 HNHQLSEQSHLRVSFSK 175
+ Q+ L+V+ ++
Sbjct: 60 NGTQVESV-QLKVNIAR 75
Score = 27.7 bits (61), Expect = 0.25
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 24 ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAV 61
A + + A A+ ++ +V Q++V I++ Q +
Sbjct: 42 AFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 79
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 1e-04
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
S + + N+P E+ + + + + L + E+A A+
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFV---TLLNGEQAQNAIQM 59
Query: 158 MHNHQLSEQSHLRVSFSKSN 177
H + + L V ++
Sbjct: 60 FHQYSFRGK-DLIVQLQPTD 78
Score = 30.9 bits (69), Expect = 0.024
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 26 IQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQA 60
+ + QA A+ + GK + V + A
Sbjct: 45 VTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 36.9 bits (85), Expect = 1e-04
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQM 158
+ + + T++ L+E F + G + K + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61
Query: 159 HNHQL 163
H+L
Sbjct: 62 SRHEL 66
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.5 bits (86), Expect = 1e-04
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKG------FTVKGFKFFPKDRK------MALLQL 145
+ +++ + SVT D+L + F + G T + D++ A +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 146 DSIEEAITALIQMHNHQLSEQSHLRVSFSKSN 177
+ A A+ L+VS ++
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGS-KLKVSLARKK 96
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.9 bits (85), Expect = 2e-04
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 86 KKPGSKNFQNIYPPSP---TLHLSNIPASVTEDELKEAFTEKGFTVKGF----KFFPKDR 138
K P + N+ P T+ + A + +L++ F+ G + + +
Sbjct: 1 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
Query: 139 KMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
+A ++ I+ I + +L + V S++
Sbjct: 61 GIAYVEFCEIQSV-PLAIGLTGQRLLGV-PIIVQASQA 96
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.3 bits (83), Expect = 3e-04
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRK----MALLQLDSIEEAITALIQ 157
++ + NIP TE++LK+ F+E G V + ++ + E A++A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 158 MHNHQLSEQSHLRVSFSKS 176
++ + S + LRV + S
Sbjct: 70 LNGREFSGR-ALRVDNAAS 87
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 35.8 bits (82), Expect = 4e-04
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAIT 153
P + + N+P +V+ DE+ + F ++ M A++ +S +EA
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 66
Query: 154 ALIQMHNHQLSEQSHLRVSF 173
A+I +++ + + +++
Sbjct: 67 AVIDLNDRPIGSR-KVKLVL 85
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 35.9 bits (82), Expect = 5e-04
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 98 PPSP----TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAIT 153
PP+ + +S +P S + +LK+ E G + M +++ E+
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDV---CYADVQKDGMGMVEYLRKEDMEY 65
Query: 154 ALIQMHNHQLSEQSHLRVSFSK 175
AL ++ + + S+ +
Sbjct: 66 ALRKLDDTKFRSHE-GETSYIR 86
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 34.3 bits (78), Expect = 0.001
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNH 161
L++ N+ +VT D+L++ F ++ + A + AI A+ +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLA--GQVLLKSGYAFVDYPDQNWAIRAIETLSGK 60
Query: 162 QLSEQSHLRVSFSKS 176
+ V +S S
Sbjct: 61 VELHGKIMEVDYSVS 75
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 34.3 bits (78), Expect = 0.002
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQ 157
L + + TE+ L+ + + G R + S+ E A +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA-MA 80
Query: 158 MHNHQLSEQSHLRVSFSKS 176
H + + + + +
Sbjct: 81 ARPHSIDGRV-VEPKRAVA 98
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.9 bits (77), Expect = 0.002
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
L + + T++ L+ F + G + R + ++EE A +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA-MN 66
Query: 158 MHNHQL 163
H++
Sbjct: 67 ARPHKV 72
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.8 bits (77), Expect = 0.002
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITA 154
+ L + +P TE +LKE F+ G + ++ E +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 155 LIQMH 159
+ Q H
Sbjct: 67 MSQRH 71
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.6 bits (76), Expect = 0.003
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 9/84 (10%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQ 157
T+ + N+ E+ L E + G D + A Q + E A L
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 158 MHNHQLSEQS-----HLRVSFSKS 176
L+V + +
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVT 93
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 33.0 bits (75), Expect = 0.003
Identities = 6/65 (9%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQM 158
+ + + E++++E F G + E ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-MEK 60
Query: 159 HNHQL 163
H +
Sbjct: 61 KYHNV 65
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.2 bits (75), Expect = 0.003
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQ 157
L + + E L++ F++ G + + R + ++I++A A++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 158 MHNHQLSEQSHLRVSFSKS 176
M+ + + +RV +
Sbjct: 67 MNGKSVDGR-QIRVDQAGK 84
Score = 25.9 bits (56), Expect = 1.2
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 18 YNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISK 57
+ + A AMM M+ V G+Q+RV +
Sbjct: 44 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 32.8 bits (74), Expect = 0.004
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEEAITALIQM 158
+ + + + T +++K F + G F K R + +S + ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEI 60
Query: 159 HNHQL 163
H H++
Sbjct: 61 HFHEI 65
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.3 bits (73), Expect = 0.006
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 98 PPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQ 157
S + + +TEDEL+E F++ G + R A + + A +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMD-VFIPKPFRAFAFVTFADDQIAQSLC-- 59
Query: 158 MHNHQLSEQSHLRVSFSKS 176
+ + S + +S ++
Sbjct: 60 GEDLIIKGIS-VHISNAEP 77
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.4 bits (73), Expect = 0.007
Identities = 11/90 (12%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGF--TVKGFKFFPKDRKMALLQLD 146
+FQ+ +H+ +P TE+++ F+ + A ++
Sbjct: 6 SGSSFQS--TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFA 63
Query: 147 SIEEAITALIQMHNHQLSEQSHLRVSFSKS 176
+ E+A+ A+ + + ++ + + +
Sbjct: 64 THEDAVAAM-AKDKANM-QHRYVELFLNST 91
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.5 bits (71), Expect = 0.010
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQM 158
+ + + T+ +LK+ F++ G V + E +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MDQ 60
Query: 159 HNHQL 163
H+L
Sbjct: 61 KEHKL 65
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 31.7 bits (71), Expect = 0.014
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 102 TLHLSNIPASVTEDELKE---AFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
L++SN+P S+ E EL+ F + T R + +++S E+ +
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 159 HNHQL 163
+ +
Sbjct: 80 NGKFI 84
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 31.2 bits (70), Expect = 0.017
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 102 TLHLSNIPASVTEDELKE---AFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQM 158
++++ P T D++KE + + + DSIE A ++
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF-VET 66
Query: 159 HNHQLSEQSHLRVSFSK 175
+ E L + F
Sbjct: 67 PGQKYKET-DLLILFKD 82
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 30.9 bits (69), Expect = 0.019
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK----DRKMALLQLDSIEEAITALIQM 158
L++ + T+ +L + G V K + + DS A A+ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 159 HNHQL 163
+
Sbjct: 61 KASGV 65
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.5 bits (68), Expect = 0.034
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKG---------FKFFPKDRKMALLQLDSIEEAI 152
L++ NIP +TE+ + + F + +D+ A L+ S++E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 153 TALIQMHNHQLSEQSHLRVSFSK 175
A + Q L++
Sbjct: 63 QA-MAFDGIIFQGQ-SLKIRRPH 83
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.6 bits (68), Expect = 0.036
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 89 GSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQ 144
GS + L +P +++E+ + F+ G + A +Q
Sbjct: 4 GSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQ 63
Query: 145 LDSIEEAITALIQMHNHQLSEQSHLRVSFSK 175
S E A AL + H ++ ++ + S
Sbjct: 64 FASQEIAEKAL-KKHKERI-GHRYIEIFKSS 92
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.9 bits (66), Expect = 0.061
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVK-GFKFFPKDRKMALLQLDSIEEAITALIQMHN 160
+ N+PA E++E F+ G + + L+ +A L
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHL----A 67
Query: 161 HQLSEQSHLRVSFSKSNI 178
+ L + ++ +
Sbjct: 68 YSKFHHVPLYLEWAPIGV 85
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.2 bits (65), Expect = 0.10
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 8 YGDVLRVKILYNKKDS----ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMIS 56
YG+V + + N D ++ A A++ ++ G+ + +S
Sbjct: 51 YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.13
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKG 125
L + + T++ L+ F + G
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWG 31
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.9 bits (64), Expect = 0.13
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKM----ALLQLDSIEEAITALIQ 157
+ + +P T+ L++ F G + + + + A A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA-CK 70
Query: 158 MHNHQLSEQSHLRVSFSKS 176
N + + V+ +
Sbjct: 71 DPNPII-DGRKANVNLAYL 88
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 28.3 bits (62), Expect = 0.16
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
+ +S +P S + +LK+ E G + + + E+ A+ ++ N +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVV---EFVRKEDMTYAVRKLDNTK 59
Query: 163 LSEQSHLRVSFSKSNIQDIRD 183
++ + + R
Sbjct: 60 FRSH-EGETAYIRVKVDGPRS 79
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 28.3 bits (62), Expect = 0.16
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 103 LHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQ 162
+ + +P VT E+ + ++ + F K + A + L + E A I +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELK---YCFVDKYKGTAFVTLLN-GEQAEAAINTFHQS 56
Query: 163 LSEQSHLRVSFSKSN 177
+ L V ++
Sbjct: 57 RLRERELSVQLQPTD 71
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 28.3 bits (62), Expect = 0.25
Identities = 14/94 (14%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 95 NIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD----RKMALLQLDSIEE 150
++ H++NIP S+T+ ++ + + AL+Q + ++
Sbjct: 3 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDD 62
Query: 151 AITALIQMHNHQLSEQSHLRVSFSKSNIQDIRDN 184
A + ++H +L+ + + ++++I N
Sbjct: 63 ARKS-ERLHRKKLNGREAFVHVVTLEDMREIEKN 95
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 311
Score = 27.6 bits (60), Expect = 0.80
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 101 PTLHLSNIPASVTEDELKEAFTEKGF 126
PT L+ + + +DE + +KG
Sbjct: 6 PTFSLAELQQGLHQDEFRRCLRDKGL 31
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 26.2 bits (57), Expect = 0.90
Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSI-----EEAITALI 156
+ + I E L++ F + + DR + + +++ ++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 61
Query: 157 QMHNHQL 163
H +
Sbjct: 62 IQKYHTV 68
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.4 bits (58), Expect = 0.91
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 6 GVYGDVLRVKILYNK-KDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKH 58
+G + ++ + A + + +A + +D G+Q+
Sbjct: 41 SKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 94
Score = 26.0 bits (57), Expect = 1.3
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 114 EDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSF 173
++L+ ++ G K F +A + EEA + + +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF-GGRQITAQA 91
Query: 174 SK 175
Sbjct: 92 WD 93
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 26.7 bits (58), Expect = 0.92
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 107 NIPASVTEDELKEAFTEKGFTVKGFKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQ 166
++ ++L F +K F ++ +L + +EA+ +N L +
Sbjct: 18 DLDDQTCREDLHILF-SNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLR 76
Query: 167 SH 168
+
Sbjct: 77 NK 78
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 26.3 bits (57), Expect = 1.0
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 102 TLHLSNIPASVTEDELKEAFTEKG-FTVKGFKFFPKDRKM---------ALLQLDSIEEA 151
+ + + + + E+ + G F A + E+A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 152 ITALIQMHNHQLSEQSHLRVS 172
+ A+ ++N + + L+ S
Sbjct: 70 LRAIQCVNNVVVDGR-TLKAS 89
Score = 25.5 bits (55), Expect = 1.6
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 1 MFSLTGVYGDVLRVKILYNKKDS--------ALIQMAESHQAHLAMMHMDKLRVFGKQMR 52
G +G + +V I + + A + S A A+ ++ + V G+ ++
Sbjct: 28 RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 87
Query: 53 V 53
Sbjct: 88 A 88
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 27.2 bits (60), Expect = 1.1
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 24 ALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKE-GQPDAGLTKDYTASPL 82
+I + E + + D R+ + ++ P G+T T S
Sbjct: 192 RVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFC-TGSLG 250
Query: 83 HRFKKPGSKNFQNIYPPSPTLHLSNIP 109
+ I +H N+
Sbjct: 251 ADPTNDLPTMIREIGHRINFVHFRNVK 277
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 27.1 bits (60), Expect = 1.3
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 80 SPLHRFKKPGSKNFQN--------IYPPSPTLHLSNIPASVT 113
SP+ + + + + IY +P + +
Sbjct: 1 SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYK 42
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 26.7 bits (58), Expect = 1.5
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPAS---VTEDELKEAFTEKGFTVKGFKFF--PK 136
+ +PG + V+E+E++EA G+ V+ + + P
Sbjct: 184 ITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPA 243
Query: 137 DRKMALLQLDSI 148
+ + + +
Sbjct: 244 HLQTGVDDVKGV 255
>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 25.6 bits (56), Expect = 2.0
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 95 NIYPPSPTLHL-SNIPASVT 113
I P SP + L SN A
Sbjct: 7 YISPESPVVQLHSNFTAVCV 26
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 26.5 bits (57), Expect = 2.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 99 PSPTLHLSNIPASVTEDELKEAFTEKGFTV 128
SP + +P V +KEAF ++G +
Sbjct: 279 FSPAVAAFYLPEGVPYARVKEAFAQRGAVI 308
>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor
(GC-SF) receptor, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 24.8 bits (54), Expect = 2.8
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 95 NIYPPSPTLHL-SNIPASVT 113
+I +P +HL I AS
Sbjct: 3 HISVSAPIVHLGDPITASCI 22
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 25.8 bits (55), Expect = 3.9
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 82 LHRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPKD---- 137
+H+ + +YP S V + F E+ KGF
Sbjct: 207 IHKRYETSYSGSPVVYPGSL-ERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRF 265
Query: 138 -----RKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNIQDIRD 183
R +++ EE I I+ + + +++R++ D+ +
Sbjct: 266 VEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTE 316
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 25.3 bits (54), Expect = 5.0
Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 83 HRFKKPGSKNFQNIYPPSPTLHLSNIPASVTEDELKEAFTEKGFTVKGFKFFPK-DRKMA 141
+ P V E++ F + ++ + + +
Sbjct: 155 FSLLGKKFQYLL-CVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLEKVDAFEERHK 212
Query: 142 LLQLDSIEEAI 152
+D + E +
Sbjct: 213 SWGIDCLFEKL 223
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia
coli [TaxId: 562]}
Length = 231
Score = 25.0 bits (53), Expect = 5.1
Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 16/126 (12%)
Query: 14 VKILYNKKDSALIQMAESHQAHLAMMHMDKLRVFGKQMRVMISKHQAVQLPKEGQPDAGL 73
+ + + A+ L ++ + + G+
Sbjct: 112 RLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVE-----RNEAPLGI 166
Query: 74 TKDYTASPLHRFKK----PGSKNFQNIYPPSPTLHLSNIPAS------VTEDELKEAFTE 123
A K P + + YP + + N + + E F
Sbjct: 167 VYGSDAVASKGVKVVATFPEDSHKKVEYPVA-VVEGHNNATVKAFYDYLKGPQAAEIFKR 225
Query: 124 KGFTVK 129
GFT+K
Sbjct: 226 YGFTIK 231
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 24.4 bits (53), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 131 FKFFPKDRKMALLQLDSIEEAITALIQMHNHQLSEQSHLRVSFSKSNI 178
FKF+ + L L +EE + L ++ N S+ HLR SNI
Sbjct: 37 FKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNI 84
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase
{Streptomyces peucetius [TaxId: 1950]}
Length = 253
Score = 24.6 bits (52), Expect = 8.1
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 113 TEDELKEAFTEKGFTVKGFKFFP 135
T ++ G V+ + P
Sbjct: 215 TREKWDGLAASAGLVVEEVRQLP 237
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 73
Score = 23.2 bits (50), Expect = 9.2
Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 110 ASVTEDELKEAFTE---KGFTVKGFKFFPKDR--KMALLQLDSIEEAITALIQMHNHQL 163
++ EL++ E + VK + P A++Q++++++AI A+ +H +++
Sbjct: 2 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,292
Number of extensions: 28099
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 122
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)