Query psy17277
Match_columns 123
No_of_seqs 116 out of 1030
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:51:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00209 SNF: Sodium:neurotran 100.0 5.7E-28 1.2E-32 195.9 11.2 120 4-123 323-442 (523)
2 KOG3660|consensus 99.9 3.9E-27 8.4E-32 193.7 11.6 120 4-123 360-479 (629)
3 COG0733 Na+-dependent transpor 99.9 8.5E-26 1.9E-30 178.4 11.3 119 2-123 278-396 (439)
4 KOG3659|consensus 99.9 1.5E-24 3.2E-29 175.4 5.4 120 4-123 401-521 (629)
5 PF02028 BCCT: BCCT family tra 82.5 25 0.00054 29.1 10.3 44 14-57 380-423 (485)
6 PF05525 Branch_AA_trans: Bran 77.7 11 0.00023 30.7 6.7 56 24-81 271-326 (427)
7 TIGR00842 bcct choline/carniti 76.3 29 0.00062 28.5 8.8 43 12-54 342-384 (453)
8 PRK03356 L-carnitine/gamma-but 73.5 50 0.0011 27.5 9.6 44 13-56 392-435 (504)
9 PRK15433 branched-chain amino 70.5 25 0.00053 28.8 7.1 62 16-80 267-328 (439)
10 PRK09950 putative transporter; 69.9 55 0.0012 27.3 9.1 43 12-54 388-430 (506)
11 PRK09928 choline transport pro 67.2 61 0.0013 28.1 9.0 42 13-54 396-437 (679)
12 PF03222 Trp_Tyr_perm: Tryptop 53.0 1.2E+02 0.0025 24.2 9.6 46 17-62 263-308 (394)
13 TIGR01197 nramp NRAMP (natural 51.4 1.3E+02 0.0027 24.2 10.9 89 25-113 291-381 (390)
14 PRK12489 anaerobic C4-dicarbox 47.3 81 0.0018 25.9 6.3 31 93-123 168-198 (443)
15 COG1292 BetT Choline-glycine b 30.4 3.4E+02 0.0074 23.0 9.8 40 14-53 393-432 (537)
16 PRK00701 manganese transport p 28.8 3.2E+02 0.0069 22.2 10.6 25 24-48 304-328 (439)
17 PF05545 FixQ: Cbb3-type cytoc 28.6 91 0.002 17.0 2.9 24 98-121 8-31 (49)
18 PF00474 SSF: Sodium:solute sy 27.7 3E+02 0.0065 21.5 10.6 44 14-58 280-323 (406)
19 COG3090 DctM TRAP-type C4-dica 26.3 2.4E+02 0.0051 19.9 5.7 65 10-76 27-98 (177)
20 PF10003 DUF2244: Integral mem 25.1 2.2E+02 0.0048 19.2 5.1 42 65-119 11-52 (140)
21 PF13334 DUF4094: Domain of un 24.2 65 0.0014 20.6 1.9 16 70-85 5-20 (95)
22 cd01324 cbb3_Oxidase_CcoQ Cyto 23.4 1.4E+02 0.003 16.5 3.0 27 95-121 6-32 (48)
23 TIGR00796 livcs branched-chain 23.0 3.9E+02 0.0086 21.3 7.1 50 30-81 271-320 (378)
24 COG1114 BrnQ Branched-chain am 21.0 3.5E+02 0.0076 22.3 5.8 27 33-59 282-308 (431)
25 KOG1278|consensus 20.7 2.1E+02 0.0045 24.6 4.6 54 8-61 497-553 (628)
26 COG1271 CydA Cytochrome bd-typ 20.6 4.7E+02 0.01 21.7 6.5 89 34-123 22-119 (457)
27 PF14715 FixP_N: N-terminal do 20.3 1.3E+02 0.0029 16.9 2.4 17 23-39 19-35 (51)
No 1
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=99.95 E-value=5.7e-28 Score=195.92 Aligned_cols=120 Identities=42% Similarity=0.836 Sum_probs=107.7
Q ss_pred CCCChhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhhhh
Q psy17277 4 TASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVISMS 83 (123)
Q Consensus 4 ~~~G~gL~Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~gl~ 83 (123)
+++||||.|+++|+++++||.|++|+++||++++++|++|+++++|++++.++|+++.+|++|+.++..+|..++++|++
T Consensus 323 ~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~~~~r~~~~~~v~~~~~l~gl~ 402 (523)
T PF00209_consen 323 PESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEFPISRKKRKKVTLIVCLVGFLLGLP 402 (523)
T ss_dssp -H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----HHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecCccchhhccceeHHHhhhHeEeccc
Confidence 46899999999999999999999999999999999999999999999999999999887888999999999999999999
Q ss_pred hcccccchhhhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 84 FAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 84 ~~t~~G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
+++++|.|++|++|++.+++.+++++++|+++++|+||.|
T Consensus 403 ~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~ 442 (523)
T PF00209_consen 403 FCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWD 442 (523)
T ss_dssp HHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHH
T ss_pred cccccHHHhcchHhhcchhHHHHHHHHHHHHheeccccce
Confidence 9999999999999999999999999999999999999964
No 2
>KOG3660|consensus
Probab=99.94 E-value=3.9e-27 Score=193.73 Aligned_cols=120 Identities=38% Similarity=0.756 Sum_probs=115.9
Q ss_pred CCCChhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhhhh
Q psy17277 4 TASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVISMS 83 (123)
Q Consensus 4 ~~~G~gL~Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~gl~ 83 (123)
+++|++|+|++||+++++||.+++|+.+||+|++++|++|+++++|.+++.+.|+|...|.+|+.++..+|.++|++|++
T Consensus 360 ~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~ 439 (629)
T KOG3660|consen 360 AKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLP 439 (629)
T ss_pred cCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchh
Confidence 68899999999999999999999999999999999999999999999999999998866778899999999999999999
Q ss_pred hcccccchhhhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 84 FAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 84 ~~t~~G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
++|++|.|+++++|+|++++.+++++.+|++.++|+||.|
T Consensus 440 ~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~ 479 (629)
T KOG3660|consen 440 LVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGAD 479 (629)
T ss_pred eecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheeccc
Confidence 9999999999999999999999999999999999999976
No 3
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.93 E-value=8.5e-26 Score=178.35 Aligned_cols=119 Identities=23% Similarity=0.394 Sum_probs=108.9
Q ss_pred CCCCCChhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhh
Q psy17277 2 AATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVIS 81 (123)
Q Consensus 2 ~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~g 81 (123)
.++++||||.|+++|++|+|||.|++++++||+++.+||+||.++++|++++.++|+++.+|+|.. ...+.+.++.|
T Consensus 278 ~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~~~R~~a~---~~~~~~~fl~g 354 (439)
T COG0733 278 ADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKAT---WLIGILIFLLG 354 (439)
T ss_pred cCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHH---HHHHHHHHHHh
Confidence 358899999999999999999999999999999999999999999999999999999977655554 45567778899
Q ss_pred hhhcccccchhhhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 82 MSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 82 l~~~t~~G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
+|+.+..|.+++|.+|+.++++.+|++++.++++++|+++.|
T Consensus 355 i~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~ 396 (439)
T COG0733 355 IPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKE 396 (439)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999999999753
No 4
>KOG3659|consensus
Probab=99.90 E-value=1.5e-24 Score=175.36 Aligned_cols=120 Identities=38% Similarity=0.800 Sum_probs=115.0
Q ss_pred CCCChhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHhhh
Q psy17277 4 TASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMK-IFPNMRKEVITGILCLLCCVISM 82 (123)
Q Consensus 4 ~~~G~gL~Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~-~~~r~~~~~~~~~~~~~~fl~gl 82 (123)
..+||||+|+++||++++||.+.+|+++||+|+...|++|+++.+|.+++.+.|++ ...|++|+.+++.+|++.+++|+
T Consensus 401 ~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l 480 (629)
T KOG3659|consen 401 AVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCLFSFLLGL 480 (629)
T ss_pred hhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999999998 45577899999999999999999
Q ss_pred hhcccccchhhhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 83 SFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 83 ~~~t~~G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
++++.+|.|+.+++|+|+.++.+++.+++|+++|+|+||.|
T Consensus 481 ~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~ 521 (629)
T KOG3659|consen 481 PFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVR 521 (629)
T ss_pred hhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999999999999975
No 5
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=82.46 E-value=25 Score=29.10 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=34.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Q psy17277 14 IFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVD 57 (123)
Q Consensus 14 ~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d 57 (123)
+.-+.++++|.+++...++.++++..=.||.=+...++-+.-.+
T Consensus 380 a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~ 423 (485)
T PF02028_consen 380 ALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSK 423 (485)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcC
Confidence 55677999999999999988888777777777776666665555
No 6
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=77.66 E-value=11 Score=30.71 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhh
Q psy17277 24 GAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVIS 81 (123)
Q Consensus 24 ~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~g 81 (123)
.|+.-..++=..+.+|.+|++++++-...+.++|.++ |.+-+..+.+.|++.++.+
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP--KISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHHHH
Confidence 4555566677788999999999999999999999865 4443334445566655543
No 7
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=76.27 E-value=29 Score=28.53 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy17277 12 FIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTS 54 (123)
Q Consensus 12 Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~ 54 (123)
-.++-+.++++|.+++...++.+.++..=.||.=+..-++-..
T Consensus 342 ~~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS~s~vla~~ 384 (453)
T TIGR00842 342 ARALFGLLQALPLGTITSALALIVIIIFFITSADSGALVLANT 384 (453)
T ss_pred hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3467788999999999998888877776666666654444433
No 8
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=73.51 E-value=50 Score=27.53 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q psy17277 13 IIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIV 56 (123)
Q Consensus 13 i~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~ 56 (123)
.++-+.++++|.+.+...++.++++.-=.||.=+..-++...-.
T Consensus 392 ~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS~t~vla~~ts 435 (504)
T PRK03356 392 RAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTC 435 (504)
T ss_pred hHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 46678899999999998888777776666666555444444333
No 9
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=70.53 E-value=25 Score=28.83 Aligned_cols=62 Identities=13% Similarity=0.031 Sum_probs=41.3
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHh
Q psy17277 16 TEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVI 80 (123)
Q Consensus 16 P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~ 80 (123)
|....+--.|+.-..++=..+.++.+|+.++.+-...+.++|.++ .+.+..+.+.|.+++++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY~~~v~i~~l~S~~l 328 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSYRTLVFILGGFSMVV 328 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHH
Confidence 444444445666677777888999999999999999999888754 33333334455555443
No 10
>PRK09950 putative transporter; Provisional
Probab=69.91 E-value=55 Score=27.31 Aligned_cols=43 Identities=2% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy17277 12 FIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTS 54 (123)
Q Consensus 12 Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~ 54 (123)
-.+.-+.++++|.+.+...++.+.++..=.||.=+..-++-..
T Consensus 388 ~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ 430 (506)
T PRK09950 388 ETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMDAVAYTMAAT 430 (506)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3456678999999999999988877776666666654444443
No 11
>PRK09928 choline transport protein BetT; Provisional
Probab=67.20 E-value=61 Score=28.12 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy17277 13 IIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTS 54 (123)
Q Consensus 13 i~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~ 54 (123)
.++-+.++++|.+.+.+.++.++++..=+||.=+..-++-+.
T Consensus 396 ~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~l 437 (679)
T PRK09928 396 RGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNF 437 (679)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 466788999999999998888777776666666654444433
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=52.97 E-value=1.2e+02 Score=24.25 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCC
Q psy17277 17 EAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFP 62 (123)
Q Consensus 17 ~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~ 62 (123)
+.+++...++....+.-..-++|=.||-++..-...+.+.|.++.+
T Consensus 263 ~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~ 308 (394)
T PF03222_consen 263 SALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK 308 (394)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445544455555555555556666788887777888888887663
No 13
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=51.40 E-value=1.3e+02 Score=24.18 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCC--CCchHHHHHHHHHHHHHHhhhhhcccccchhhhhhHHhhch
Q psy17277 25 AQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIF--PNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN 102 (123)
Q Consensus 25 ~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~--~r~~~~~~~~~~~~~~fl~gl~~~t~~G~~~~~~~D~~~~~ 102 (123)
|+.-..+|-+-++.+|.+|.+..--.-....++-.++ +++.|+..+..+..+..+.......+.+...+-..-....+
T Consensus 291 G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~ 370 (390)
T TIGR01197 291 SPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLS 370 (390)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4445567777799999999998765433333333333 33334443322111111111111112233334444555667
Q ss_pred hHHHHHHHHHH
Q psy17277 103 FPLLIIAFFEC 113 (123)
Q Consensus 103 ~~l~~~~l~e~ 113 (123)
..+|+......
T Consensus 371 l~LP~~~i~Ll 381 (390)
T TIGR01197 371 LLLPFALIPLI 381 (390)
T ss_pred HHHHHHHHHHH
Confidence 78887766543
No 14
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=47.31 E-value=81 Score=25.88 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.1
Q ss_pred hhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 93 FILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 93 ~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
++..|....+.+..+.+..-...++|.||+|
T Consensus 168 ~~~f~il~VgIP~~~ig~l~~~l~~~~~gk~ 198 (443)
T PRK12489 168 ITLLDILAVTIPATLIGVLAAALWSLRRGKD 198 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4666766667777788888888889999876
No 15
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=30.38 E-value=3.4e+02 Score=23.03 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=31.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy17277 14 IFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTT 53 (123)
Q Consensus 14 ~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~ 53 (123)
++=+.+++.|.+.+.+.++.+.....-+||.=+.--++-.
T Consensus 393 alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~ 432 (537)
T COG1292 393 ALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAM 432 (537)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4446689999999999999988888888887776444433
No 16
>PRK00701 manganese transport protein MntH; Reviewed
Probab=28.77 E-value=3.2e+02 Score=22.21 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhh
Q psy17277 24 GAQIWAVLFFLMLFTLGIDSQFGTL 48 (123)
Q Consensus 24 ~~~~~~~lff~~l~~agltS~~~~~ 48 (123)
.|+....+|-+-++.+|++|.+..-
T Consensus 304 ~G~~a~~lFaiGL~aag~sS~i~~~ 328 (439)
T PRK00701 304 LGAAAATLFGIALLASGLSSTVVGT 328 (439)
T ss_pred HhHHHHHHHHHHHHHhHhHHHhHHH
Confidence 3566667777778889998887743
No 17
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.63 E-value=91 Score=17.04 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=12.1
Q ss_pred HhhchhHHHHHHHHHHHHHhheec
Q psy17277 98 SFSGNFPLLIIAFFECIAVSYIYG 121 (123)
Q Consensus 98 ~~~~~~~l~~~~l~e~i~v~w~yg 121 (123)
.+..++.+++...+-+..+.|.|.
T Consensus 8 ~~~~~~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 8 GFARSIGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444555667664
No 18
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=27.70 E-value=3e+02 Score=21.50 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=29.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q psy17277 14 IFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM 58 (123)
Q Consensus 14 ~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~ 58 (123)
++|....+. .++..+.++...++.+.++|.-+.+....+.+.+.
T Consensus 280 ~~~~~~~~~-~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~D 323 (406)
T PF00474_consen 280 AFPYLAAQY-LPPGLAGLFLAGILAAIMSTADSLLLAISSIFSRD 323 (406)
T ss_dssp HHHHHHT-T-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhh-ccchhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHH
Confidence 556666553 23456667777788888888888888888876543
No 19
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=26.34 E-value=2.4e+02 Score=19.87 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHhhccCCCCchHHHHHHHHHHH
Q psy17277 10 LAFIIFTEAINQF------PGAQIWAVLFFLMLFTLGIDSQFGT-LEGVTTSIVDMKIFPNMRKEVITGILCLL 76 (123)
Q Consensus 10 L~Fi~~P~~~~~~------p~~~~~~~lff~~l~~agltS~~~~-~e~iv~~l~d~~~~~r~~~~~~~~~~~~~ 76 (123)
+.-+.+.+++.+- .++.=.+...|.-+.+.|..-.+-- -+.-++.+.+. .|++.|+....+.+.+
T Consensus 27 m~~iv~~~V~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~r~~~Hi~vd~l~~~--lp~~~r~~l~~~~~~l 98 (177)
T COG3090 27 MVLIVFLQVFTRYVFNSPISWSEELARLLFVWLIFLGAAYGVREGGHIGVDVLVNL--LPPRARKILRIIADLL 98 (177)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHhccCCeeeehHHHHh--CCHHHHHHHHHHHHHH
Confidence 3444555555542 3555566777888888887544432 24445555554 5555555544444433
No 20
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=25.09 E-value=2.2e+02 Score=19.17 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhcccccchhhhhhHHhhchhHHHHHHHHHHHHHhhe
Q psy17277 65 RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYI 119 (123)
Q Consensus 65 ~~~~~~~~~~~~~fl~gl~~~t~~G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~ 119 (123)
....+..++|.++++.++.+. ..+.+.++.-+.+|..++.|.
T Consensus 11 g~~~~~~~~~~~~~~~a~~f~-------------~~GaW~Vl~F~glev~~l~~a 52 (140)
T PF10003_consen 11 GFLIFIAILAAVSLIIAIAFL-------------LMGAWPVLPFAGLEVLALWYA 52 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HhchHHHHHHHHHHHHHHHHH
Confidence 344455556666666666443 223455555566677766654
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=24.17 E-value=65 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhhc
Q psy17277 70 TGILCLLCCVISMSFA 85 (123)
Q Consensus 70 ~~~~~~~~fl~gl~~~ 85 (123)
+.++|+.+|+.|+.++
T Consensus 5 ~l~Lc~~SF~~G~lft 20 (95)
T PF13334_consen 5 VLLLCIASFCAGMLFT 20 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678999999998765
No 22
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.36 E-value=1.4e+02 Score=16.52 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=15.1
Q ss_pred hhHHhhchhHHHHHHHHHHHHHhheec
Q psy17277 95 LFDSFSGNFPLLIIAFFECIAVSYIYG 121 (123)
Q Consensus 95 ~~D~~~~~~~l~~~~l~e~i~v~w~yg 121 (123)
.+.+++.++.++....+-...+.|.|.
T Consensus 6 ~lr~~a~~~~l~~~~~~Figiv~wa~~ 32 (48)
T cd01324 6 TLRGLADSWGLLYLALFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555555544555556677774
No 23
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=23.03 E-value=3.9e+02 Score=21.31 Aligned_cols=50 Identities=10% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhh
Q psy17277 30 VLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVIS 81 (123)
Q Consensus 30 ~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~g 81 (123)
.+.=....++.+|+.++.+-..-+.+.|.+ +|.+-+..+...|+.+++.+
T Consensus 271 ~ll~i~v~lACLtT~iGli~~~a~~f~~~~--~k~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 271 FLLGLIITLACLTTAVGLTTACSEYFHKLV--PKLSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHH
Confidence 344455778888999998888888887763 34544444445555555443
No 24
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=20.95 E-value=3.5e+02 Score=22.27 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhcc
Q psy17277 33 FLMLFTLGIDSQFGTLEGVTTSIVDMK 59 (123)
Q Consensus 33 f~~l~~agltS~~~~~e~iv~~l~d~~ 59 (123)
=.++++|.+|+.++.+-...+.+.+..
T Consensus 282 ~~iv~lACLTTaiGLi~a~aefF~~~~ 308 (431)
T COG1114 282 GLIVFLACLTTAVGLIVACAEFFSKLV 308 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999999888888888764
No 25
>KOG1278|consensus
Probab=20.66 E-value=2.1e+02 Score=24.58 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHhcCCchh---HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCC
Q psy17277 8 TGLAFIIFTEAINQFPGAQ---IWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIF 61 (123)
Q Consensus 8 ~gL~Fi~~P~~~~~~p~~~---~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~ 61 (123)
.|-.||=+=-+++.+...+ ++|++|+..+.+.=.+++++.+-+--.-..|.++|
T Consensus 497 Fg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~W 553 (628)
T KOG1278|consen 497 FGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNW 553 (628)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 3445555555555554444 58888888888888888888876666666666654
No 26
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=20.57 E-value=4.7e+02 Score=21.74 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHH-HH-HHHHHhhhhhcccccchhhhhhHHhhchhHHHH----
Q psy17277 34 LMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGI-LC-LLCCVISMSFAHGAGNYVFILFDSFSGNFPLLI---- 107 (123)
Q Consensus 34 ~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~-~~-~~~fl~gl~~~t~~G~~~~~~~D~~~~~~~l~~---- 107 (123)
...+..|++..++.+|..=..=.|+. ..+..|.+.... +- .++-+.|+.+..|.|.+|=+..+....-...|+
T Consensus 22 Fv~lTiGl~~~lai~e~~~~~t~d~~-y~~~tkfw~kvf~InFa~GvvTGivm~fqfg~nW~~fs~~vG~V~g~PLa~E~ 100 (457)
T COG1271 22 FVPLTIGLAFMLAIMETLYVKTKDEI-YKRMTKFWGKVFAINFAVGVVTGIVMEFQFGTNWPGFSEYVGDVFGAPLAIEA 100 (457)
T ss_pred HHhHHhhHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccHHHHHHHHHHhhhHHHHHH
Confidence 34466888999999887765544442 222222222211 11 122245667777888887666554332233332
Q ss_pred --HHHHHHHHH-hheecCC
Q psy17277 108 --IAFFECIAV-SYIYGLK 123 (123)
Q Consensus 108 --~~l~e~i~v-~w~yg~~ 123 (123)
.=++|+.++ .|.||.|
T Consensus 101 l~AFFlEa~FLGi~lfgwd 119 (457)
T COG1271 101 LFAFFLEATFLGIFLFGWD 119 (457)
T ss_pred HHHHHHHHHHHhheeeecc
Confidence 223454443 4666654
No 27
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=20.33 E-value=1.3e+02 Score=16.94 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHHHHH
Q psy17277 23 PGAQIWAVLFFLMLFTL 39 (123)
Q Consensus 23 p~~~~~~~lff~~l~~a 39 (123)
|.++.|..+|+.+++++
T Consensus 19 plP~ww~~~f~~tivfa 35 (51)
T PF14715_consen 19 PLPRWWLWLFYGTIVFA 35 (51)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67788888888777665
Done!