Query psy17277
Match_columns 123
No_of_seqs 116 out of 1030
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:52:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 2.8E-28 9.4E-33 196.6 10.0 113 5-123 316-430 (519)
2 3dh4_A Sodium/glucose cotransp 58.2 66 0.0023 25.3 10.1 43 14-58 309-351 (530)
3 4ain_A Glycine betaine transpo 41.3 1.4E+02 0.0048 24.1 9.9 38 13-50 398-435 (539)
4 2xq2_A Sodium/glucose cotransp 36.2 1.6E+02 0.0056 23.4 8.8 43 14-58 338-380 (593)
5 2wsw_A BCCT family betaine/car 21.6 3.1E+02 0.011 21.9 10.7 38 13-50 397-434 (509)
6 3tlw_A GLR4197 protein, GLIC; 18.9 1.4E+02 0.005 21.5 4.3 27 94-120 257-284 (321)
7 3rqw_A ELIC pentameric ligand 17.0 2.2E+02 0.0075 20.5 4.9 29 93-121 259-288 (322)
8 3rhw_A Avermectin-sensitive gl 15.8 2E+02 0.0068 21.0 4.5 28 93-120 273-301 (347)
9 3arc_I Photosystem II reaction 14.6 1.3E+02 0.0044 15.2 2.1 15 29-43 11-25 (38)
10 2bg9_E Acetylcholine receptor 10.0 5.3E+02 0.018 18.9 5.5 30 91-120 270-300 (370)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.95 E-value=2.8e-28 Score=196.57 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=105.4
Q ss_pred CCC-hhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhhhh
Q psy17277 5 ASG-TGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVITGILCLLCCVISMS 83 (123)
Q Consensus 5 ~~G-~gL~Fi~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~~~~~r~~~~~~~~~~~~~~fl~gl~ 83 (123)
++| |||.|+++|+++++||+|++|+++||++++++|+||+++++|++++.++|++++ +|+..+..+|.+++++|++
T Consensus 316 ~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~---~R~~~~~~v~~~~fllgl~ 392 (519)
T 2a65_A 316 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL---SRKHAVLWTAAIVFFSAHL 392 (519)
T ss_dssp HHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCC---cHHHHHHHHHHHHHHHHHH
Confidence 578 999999999999999999999999999999999999999999999999999854 4566677889999999999
Q ss_pred hcccc-cchhhhhhHHhhchhHHHHHHHHHHHHHhheecCC
Q psy17277 84 FAHGA-GNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123 (123)
Q Consensus 84 ~~t~~-G~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 123 (123)
+++++ | +|++|++++++.+++++++|+++++|+||.|
T Consensus 393 ~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g~~ 430 (519)
T 2a65_A 393 VMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 430 (519)
T ss_dssp HHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeeehh
Confidence 99988 7 8999999999999999999999999999864
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=58.22 E-value=66 Score=25.31 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=30.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q psy17277 14 IFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM 58 (123)
Q Consensus 14 ~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~ 58 (123)
++|...+.+| +...-++...++.+..+|.-+.+....+.+.+.
T Consensus 309 ~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~D 351 (530)
T 3dh4_A 309 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMD 351 (530)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Confidence 5677666555 555666677777788888888888888887654
No 3
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=41.34 E-value=1.4e+02 Score=24.08 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHH
Q psy17277 13 IIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEG 50 (123)
Q Consensus 13 i~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~ 50 (123)
.++-+.++++|.+.+.+.++-+++..-=+||.=+..-+
T Consensus 398 ~alf~~l~~lP~~~i~~~l~iili~~FfvTSaDS~s~v 435 (539)
T 4ain_A 398 EQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTV 435 (539)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred hHHHHHHHHCchHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 36667899999999998888777666556665555433
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=36.21 E-value=1.6e+02 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=30.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q psy17277 14 IFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM 58 (123)
Q Consensus 14 ~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~iv~~l~d~ 58 (123)
++|...+.+| +....++...++.+..+|.-+.+....+.+.+.
T Consensus 338 ~~p~l~~~lp--~~l~gl~~a~llaA~mST~~s~l~a~st~~~~D 380 (593)
T 2xq2_A 338 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMD 380 (593)
T ss_dssp HHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6676664454 666777777888888888888888887776654
No 5
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=21.65 E-value=3.1e+02 Score=21.86 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhhHH
Q psy17277 13 IIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEG 50 (123)
Q Consensus 13 i~~P~~~~~~p~~~~~~~lff~~l~~agltS~~~~~e~ 50 (123)
.++-+.++++|.+.+.+.++-+++..-=+||.=+..-+
T Consensus 397 ~alf~~l~~lP~~~i~~~l~iil~~~FfvTSaDS~s~v 434 (509)
T 2wsw_A 397 RAIIETWAALPLSTATMWGFFILCFIATVTLINACSYT 434 (509)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCChHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34667789999999998887777766555665555433
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=18.89 E-value=1.4e+02 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=14.5
Q ss_pred hhhHHhh-chhHHHHHHHHHHHHHhhee
Q psy17277 94 ILFDSFS-GNFPLLIIAFFECIAVSYIY 120 (123)
Q Consensus 94 ~~~D~~~-~~~~l~~~~l~e~i~v~w~y 120 (123)
..+|.|. ..+.+.+.+++|.+.+.+..
T Consensus 257 p~i~~~~~~~~~~v~~sll~~v~v~~l~ 284 (321)
T 3tlw_A 257 TYTGAIIFMIYLFYFVAVIEVTVQHYLK 284 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555554 34555566666666555443
No 7
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=16.96 E-value=2.2e+02 Score=20.53 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=22.6
Q ss_pred hhhhHHhh-chhHHHHHHHHHHHHHhheec
Q psy17277 93 FILFDSFS-GNFPLLIIAFFECIAVSYIYG 121 (123)
Q Consensus 93 ~~~~D~~~-~~~~l~~~~l~e~i~v~w~yg 121 (123)
...+|.|. ..+.+.+.+++|.+.+.+...
T Consensus 259 vp~i~~~~~~~~~~v~~sll~~~~v~~l~~ 288 (322)
T 3rqw_A 259 TTVIDQMIIAGYGSIFAAILLIIFAHHRQA 288 (322)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57778776 467788899999998877654
No 8
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=15.78 E-value=2e+02 Score=21.03 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=20.7
Q ss_pred hhhhHHhh-chhHHHHHHHHHHHHHhhee
Q psy17277 93 FILFDSFS-GNFPLLIIAFFECIAVSYIY 120 (123)
Q Consensus 93 ~~~~D~~~-~~~~l~~~~l~e~i~v~w~y 120 (123)
...+|.|. ..+.+.+++++|.+.+.+..
T Consensus 273 v~~id~~~~~~~~~v~~slle~~~v~~l~ 301 (347)
T 3rhw_A 273 IKAIDVWIGACMTFIFCALLEFALVNHIA 301 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777665 46778888899988887654
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=14.57 E-value=1.3e+02 Score=15.23 Aligned_cols=15 Identities=47% Similarity=0.879 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhh
Q psy17277 29 AVLFFLMLFTLGIDS 43 (123)
Q Consensus 29 ~~lff~~l~~agltS 43 (123)
-+.||..++.-|.-|
T Consensus 11 vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 11 VVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccC
Confidence 366788888887744
No 10
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=10.03 E-value=5.3e+02 Score=18.93 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=20.3
Q ss_pred hhhhhhHHhh-chhHHHHHHHHHHHHHhhee
Q psy17277 91 YVFILFDSFS-GNFPLLIIAFFECIAVSYIY 120 (123)
Q Consensus 91 ~~~~~~D~~~-~~~~l~~~~l~e~i~v~w~y 120 (123)
|-...+|.|. ....+.+.+++|.+++.+.+
T Consensus 270 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~ 300 (370)
T 2bg9_E 270 LNVPLIGKYLIFVMFVSLVIVTNCVIVLNVS 300 (370)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhheeee
Confidence 3345666665 45667788888988877665
Done!