RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17277
(123 letters)
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 192 bits (491), Expect = 5e-60
Identities = 73/123 (59%), Positives = 90/123 (73%)
Query: 1 MAATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKI 60
+ GTGLAFI+FTEAI +FPGA W+VLFFLML TLG+ S FGTLEGV T + D KI
Sbjct: 354 LDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLMLLTLGLGSMFGTLEGVLTPLFDSKI 413
Query: 61 FPNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIY 120
P + KE +TG++CL+C +I + F +GNY +FDS+SG PLLIIA FE IAVSY+Y
Sbjct: 414 LPKVPKEYLTGLVCLVCFLIGLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVY 473
Query: 121 GLK 123
GL
Sbjct: 474 GLD 476
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 146 bits (370), Expect = 1e-42
Identities = 64/121 (52%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 4 TASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPN 63
+ASG GLAFI+FTEA+ PGAQ+WAVLFF MLFTLG+ S FG +EGV T ++D+ + P
Sbjct: 362 SASGPGLAFIVFTEAVLHMPGAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDVGVLPR 421
Query: 64 -MRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
+ KE +TG++CL+C + ++ F +GNY +FDSF+ + LL+IAFFE + V Y+YG+
Sbjct: 422 WVPKEALTGLVCLVCFLSALCFTLQSGNYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGI 481
Query: 123 K 123
K
Sbjct: 482 K 482
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 134 bits (339), Expect = 2e-38
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM-KIFPNM 64
SG GLAFI + EA+ P + W+VLFFLML TLG+DSQFG +EG+ T++VD I
Sbjct: 307 SGPGLAFIAYPEAVTMLPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRK 366
Query: 65 RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
R+E+ T I+C++ +I + G YVF LFD ++ +F LL + FFECIAV+++YGL
Sbjct: 367 RRELFTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLD 425
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 132 bits (335), Expect = 3e-38
Identities = 49/119 (41%), Positives = 76/119 (63%)
Query: 5 ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
G GLAF+++ EAI + P Q+W+VLFF MLF LG+DSQF +E + T+IVD
Sbjct: 261 KGGPGLAFVVYPEAIAKMPVPQLWSVLFFFMLFLLGLDSQFAIVETIVTAIVDEFPKLRK 320
Query: 65 RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
RK ++T +C++ ++ + + G Y+ L D ++ F LL++A FE IA+S+IYG+
Sbjct: 321 RKWLVTLGVCVVGFLLGLPYVTQGGIYILDLLDYYAATFSLLVLALFELIAISWIYGVD 379
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 134 bits (338), Expect = 6e-38
Identities = 63/117 (53%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFP-NMR 65
GTGLAFI+FTEAI + P + +W+VLFF+MLF LG+ S FG +EGV + D+K+ P +
Sbjct: 364 GTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPKSWP 423
Query: 66 KEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
KE+ITG++CL+ +I + F G+GNY LFDSF+G+ PLLIIAF E +V Y+YG+
Sbjct: 424 KEIITGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGI 480
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 122 bits (308), Expect = 7e-34
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 8/125 (6%)
Query: 5 ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
SG GLAFI + A++ P Q+WAVLFF+ML LG+DSQF +EG T+IVD+ +PN+
Sbjct: 325 ESGPGLAFIAYPRAVSLLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDL--YPNV 382
Query: 65 -----RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN-FPLLIIAFFECIAVSY 118
R+E+ I+CL+C +I + G YVF LFD ++ + LL +AFFECIA+S+
Sbjct: 383 LRLRYRREIFVAIVCLVCFLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISW 442
Query: 119 IYGLK 123
+YG
Sbjct: 443 VYGAD 447
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 116 bits (293), Expect = 9e-32
Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
GTGLAFI FTEA+ FP + W+V+FFLML LG+ S FGT+EG+ T IVD +RK
Sbjct: 378 GTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTF---KVRK 434
Query: 67 EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
E++T I CLL I + F +GNY +FD +S PLLI+ E IAVS++YG+
Sbjct: 435 EILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGI 490
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 115 bits (290), Expect = 2e-31
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIF-PNMR 65
GTGLAFI+++EAI +Q+W+VL+F ML LGI S G + T + D KI ++
Sbjct: 369 GTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLP 428
Query: 66 KEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
KE I+G++C + C+I + F AGNY F +F+ ++ LL+I E IAV Y+YGL+
Sbjct: 429 KEAISGLVCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLR 486
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 111 bits (280), Expect = 4e-30
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
GTGLAFI FTEA+ FP + W+V+FFLML LG+ S FGT+EG+TT IVD +RK
Sbjct: 328 GTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTF---KVRK 384
Query: 67 EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
E++T I CL +I + F +GNY +FD +S PLLI+ E IAV++IYG+K
Sbjct: 385 EILTVICCLFAFLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIK 441
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 106 bits (267), Expect = 3e-28
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 5 ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
+G GLAF+ + EA+ P + W++LFF ML TLG+DSQF LE + T++ D FP +
Sbjct: 324 DAGPGLAFVAYPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTDE--FPYL 381
Query: 65 ---RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYG 121
K G++C+ ++ + G Y L D +S +F L+++A F C+A+S++YG
Sbjct: 382 LRKYKTWFLGLICVGMYLLGLLLVTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYG 441
Query: 122 LK 123
++
Sbjct: 442 IQ 443
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 106 bits (267), Expect = 3e-28
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM---KIFP 62
SG GLAFI + +A+ P A +WA LFF ML LG+DSQF +EG T I+D+ K +
Sbjct: 337 SGPGLAFIAYPKAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYG 396
Query: 63 NMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN-FPLLIIAFFECIAVSYIYG 121
+R+E+ + CLLC +I +S G YVF LFD +S + LL AF+EC+ ++++YG
Sbjct: 397 RLRREITAALCCLLCFLIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYG 456
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 103 bits (258), Expect = 5e-27
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
GTGLAFI FTEA+ FP + W+V+FFLML LG+ S GT+ G+TT I+D +RK
Sbjct: 378 GTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTF---KVRK 434
Query: 67 EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
EV T C+ ++ + F +GNY +FD +S PL I+ E IAV++IYG K
Sbjct: 435 EVFTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTK 491
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 102 bits (256), Expect = 9e-27
Identities = 56/122 (45%), Positives = 81/122 (66%), Gaps = 6/122 (4%)
Query: 5 ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
ASG GLAF+ + EA+ Q P + +WAVLFF ML LGIDSQF T+EG T++VD FP +
Sbjct: 357 ASGPGLAFLAYPEAVTQLPISPLWAVLFFSMLLMLGIDSQFCTVEGFITALVDE--FPRL 414
Query: 65 ---RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN-FPLLIIAFFECIAVSYIY 120
R+E+ ++C++ +I +S G YVF LFD +S + LL + FFEC+++S+ Y
Sbjct: 415 LRNRREIFIAVVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFY 474
Query: 121 GL 122
G+
Sbjct: 475 GV 476
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 97.8 bits (244), Expect = 6e-25
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 3 ATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVD-MKIF 61
G GL FI++ EAI PG+ WA++FFLML TLG+DS FG LE V T + D
Sbjct: 322 VATEGPGLVFIVYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPV 381
Query: 62 PNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYG 121
R+E+ + ++C ++++ G YV L D ++ +L + F E +AVS+ YG
Sbjct: 382 LGKRRELFVLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYG 441
Query: 122 LK 123
+
Sbjct: 442 VD 443
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 96.4 bits (240), Expect = 2e-24
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMR 65
SG LAFI + EA+ + P + +W++LFF ML TLG+DSQF +E +TT+I D FP +
Sbjct: 346 SGFDLAFIAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQDA--FPKVM 403
Query: 66 KE---VITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYG 121
K+ IT +C++ ++ + AG Y L D F + +L A E I + +IYG
Sbjct: 404 KKKRIPITLGVCIILFLLGLPCVTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYG 462
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 95.3 bits (237), Expect = 5e-24
Identities = 52/122 (42%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM- 64
SG GLAFI + +A+ P WA+LFF+ML LG+DSQF +EG TS+VD+ +P+
Sbjct: 325 SGPGLAFIAYPKAVTMMPLPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDL--YPSFL 382
Query: 65 ----RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN-FPLLIIAFFECIAVSYI 119
R+E+ I+C + ++ ++ G YVF LFD ++ + LL +AFFECIAV+++
Sbjct: 383 RKGYRREIFIAIVCFISYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWV 442
Query: 120 YG 121
YG
Sbjct: 443 YG 444
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 90.2 bits (224), Expect = 3e-22
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
G GL F+++ EA++ PG+ W++LFFLML TLG+DS FG E + T++ D FP +++
Sbjct: 340 GPGLVFVVYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDE--FPIIKR 397
Query: 67 --EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
E+ G L VI ++ G Y F L D ++ + +LI FE +AVS+IYGL
Sbjct: 398 HRELFVGCLFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLD 456
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 89.6 bits (222), Expect = 4e-22
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM-- 64
G G+AF+++ EA+ + P + WA++FFLML TLG+D+ F T+E + TS+ D FP
Sbjct: 352 GPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDE--FPKYLR 409
Query: 65 -RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
K + T + C+ ++ G Y+ L D+++ ++ L+IIA FE + +SYIYGL+
Sbjct: 410 THKPLFTLVCCISFFIMGFPMITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQ 469
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 87.9 bits (219), Expect = 1e-21
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 5 ASGTGLAFIIFTEAINQF-PGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPN 63
+SG GLAF+ F +AIN PG ++ VLFFL L G+ S +E V +++ D
Sbjct: 291 SSGIGLAFVAFPKAINLMPPGGALFGVLFFLSLVFAGLTSLISLVEVVISALQDKFGLS- 349
Query: 64 MRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
RK+ +T I+CL+ ++S+ FA GAG Y+ + D F N+ ++++ E I V +++G
Sbjct: 350 -RKKAVT-IVCLVGFLVSLLFATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGA 406
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 86.0 bits (213), Expect = 7e-21
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 3 ATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM--KI 60
AT +G L FI + EAI PG+ +A++FFLM+ TLG+DS FG LEGV T+++D +
Sbjct: 320 ATDAGPSLLFITYAEAIANMPGSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHV 379
Query: 61 FPNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIY 120
R+ + G++ +C + S++ G YV L + ++ +L + E IAVS+ Y
Sbjct: 380 IGKRREIFVLGLVI-VCFLGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFY 438
Query: 121 GL 122
G+
Sbjct: 439 GI 440
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 85.8 bits (212), Expect = 8e-21
Identities = 46/116 (39%), Positives = 66/116 (56%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
G GL FII+ EAI P + +WAV+FF+ML TLGIDS G +E V T ++D F + +
Sbjct: 327 GPGLIFIIYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKFLHRHR 386
Query: 67 EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
E+ T + L +IS+ G YVF L D F+ +L E I +++ YG+
Sbjct: 387 ELFTLFIVLSTFLISLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGV 442
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 85.4 bits (211), Expect = 1e-20
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM--KIF-P 62
SG GLAFI + +A+ P + +WA LFF+ML LG+DSQF +E + T++VDM K+F
Sbjct: 325 SGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRR 384
Query: 63 NMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSF-SGNFPLLIIAFFECIAVSYIYG 121
R+E++ L ++ + + G Y+F LFDS+ + LL +A FECI + ++YG
Sbjct: 385 GYRRELLILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYG 444
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 82.8 bits (205), Expect = 8e-20
Identities = 39/113 (34%), Positives = 62/113 (54%)
Query: 10 LAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRKEVI 69
L F+ + EAI Q PG+ +AVLFFL LF LGI S F LE V T I D +++ I
Sbjct: 261 LGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGISSAFALLEAVVTLICDSGWGRKVKRWWI 320
Query: 70 TGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
++C + ++S+ + G Y+ D++ N L+ + + EC+A + +Y
Sbjct: 321 ATVVCFVSFLLSLPYCTRFGYYLLDAVDAWISNVALVFVVWAECVAATTVYRF 373
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 82.3 bits (203), Expect = 1e-19
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM- 64
SG GLAFI + A+ P +Q+W+ LFFLML LG+DSQF +E + T+ +DM FP +
Sbjct: 324 SGPGLAFIAYPTAVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDM--FPGVF 381
Query: 65 ----RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSF-SGNFPLLIIAFFECIAVSYI 119
R+E++ + ++C ++ + G Y+F LFD + + LL +A FE I + ++
Sbjct: 382 RKKGRRELLILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWV 441
Query: 120 YG 121
YG
Sbjct: 442 YG 443
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 76.4 bits (188), Expect = 2e-17
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 8/124 (6%)
Query: 6 SGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM- 64
SG GLAFI + A++ P + +WA FF+M+ LG+DSQF +E + T++VDM +P +
Sbjct: 322 SGPGLAFIAYPRAVSMMPFSPLWACFFFIMIVLLGLDSQFVCVESLVTAMVDM--YPEVF 379
Query: 65 ----RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGN-FPLLIIAFFECIAVSYI 119
R+E++ + ++ ++ + G YVF LFD ++ + LL +A FE + ++++
Sbjct: 380 RKKNRRELLILFVSIVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWV 439
Query: 120 YGLK 123
YG
Sbjct: 440 YGAD 443
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 74.2 bits (182), Expect = 1e-16
Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIV-DMKIFPNMR 65
G GL FI++ EAI+ G+ WAV+FF+ML TLGIDS G +E V T + D I R
Sbjct: 328 GAGLVFILYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFSILKKHR 387
Query: 66 K------EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYI 119
K IT +L L C G YV L D+F+ +L E I VS+
Sbjct: 388 KLFTFGVAFITFLLALFCIT-------NGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWF 440
Query: 120 YGL 122
YG+
Sbjct: 441 YGV 443
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 72.4 bits (178), Expect = 4e-16
Identities = 39/117 (33%), Positives = 67/117 (57%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNMRK 66
G G AF+ F+EAI+ PG+ WA++FFL L G+ + FG ++G+ T + D F
Sbjct: 346 GPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQGIYTPLQDTFSFFRKHP 405
Query: 67 EVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
+++T ++C+ + + F +G+Y L D + P++ I FE IA+++ YG K
Sbjct: 406 KLLTVLVCVGLFLGGLVFTQPSGSYFRSLLDDYLVPLPIIFIVVFENIALAWAYGAK 462
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 71.5 bits (175), Expect = 9e-16
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 7 GTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDM--KIFPNM 64
G GLAF+ + EA+ P + +W++LFF ML LG+ +QF LE + T++VD +
Sbjct: 354 GPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDEIGNDWIIR 413
Query: 65 RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
K +T + ++ ++ + AG Y +L D+++ +F L+II+ CIA+ YIYG +
Sbjct: 414 NKTYVTLGVAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHR 472
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 61.1 bits (149), Expect = 4e-12
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MAATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKI 60
A + G GL FI+ NQ P ++ +LFFL+L + S LE + +++D
Sbjct: 277 GADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKF- 335
Query: 61 FPNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIY 120
+ ++ T ++ +L ++ + G +F L D N + + A I V ++
Sbjct: 336 --GISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVL 393
Query: 121 GLK 123
+
Sbjct: 394 KKE 396
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 54.4 bits (132), Expect = 8e-10
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 5 ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
A+G GL FI Q PG +++ +LFFL+L + S LE ++D +
Sbjct: 277 AAGPGLLFITLPAVFAQMPGGRLFGILFFLLLLFAALTSAISLLEVPVAYLIDEFGWSRK 336
Query: 65 RKEVITGILCLLCCVIS------MSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSY 118
+ +I GI+ L + S +S G +F L D N L + I V +
Sbjct: 337 KATLIVGIIIFLLGIPSALSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFVGW 396
Query: 119 IYG 121
+ G
Sbjct: 397 VLG 399
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 40.7 bits (96), Expect = 5e-05
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Query: 2 AATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIF 61
A A GL FI +Q PG Q + L+F +LF GI S L+ + + +
Sbjct: 293 VAKAGTFGLGFIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEE--L 350
Query: 62 PNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYG 121
RK I L+ V D + G L+++ E I ++I+G
Sbjct: 351 KWSRKHAALWIFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVLGLIEVIVFAWIFG 410
Query: 122 LK 123
K
Sbjct: 411 AK 412
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 33.7 bits (77), Expect = 0.015
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 67 EVITGILCLLCCVISMSFAHGAG-----NYVFILFDSFSGNFPLLIIAFFECIAVSYIY 120
EVI G L L C++SM+ G G NY F+ + ++++ CIAV YIY
Sbjct: 19 EVIVGTLTLTICMLSMNMFTGLGKICGWNYECPKFEEDVLSSDIIVMTITRCIAVLYIY 77
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two proteins
associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter proteins.
Length = 649
Score = 27.2 bits (61), Expect = 2.3
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 45 FGTLEGVTTSIVDMKIFPNMRKEVITGILCLL--CCVISMSFAHGAGNYVFIL 95
GTL G ++ + +F + L L C +Y F+L
Sbjct: 54 LGTLVGAAAAVALVALFVQAP-LLFLLALALWIGLCTALSLLDRNFRSYAFVL 105
>gnl|CDD|235720 PRK06156, PRK06156, hypothetical protein; Provisional.
Length = 520
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 37 FTLGIDSQFGTLEGVTTSIVDMKIFPN 63
G+D++ + G T + K+FPN
Sbjct: 451 HFTGLDAKPVAIAGSTNA----KLFPN 473
>gnl|CDD|147298 pfam05041, Pecanex_C, Pecanex protein (C-terminus). This family
consists of C terminal region of the pecanex protein
homologues. The pecanex protein is a maternal-effect
neurogenic gene found in Drosophila.
Length = 232
Score = 25.9 bits (57), Expect = 5.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 73 LCLLCCVI----SMSFAHGAGNYVFILFDSFSGNFPLL 106
LCLL S + + ++++ L F G+F +
Sbjct: 20 LCLLGRRALGTASHNMSKSLESFLYGLHALFKGDFRIT 57
>gnl|CDD|176735 cd08320, Pyrin_NALPs, Pyrin death domain found in NALP proteins.
Pyrin Death Domain found in NALP (NACHT, LRR and PYD
domains) proteins including NALP1 (CARD7, NLRP1), NALP3
(NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12,
Monarch-1), among others. Mammals contains at least 14
NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are
members of the NBS-LRR family of proteins possessing a
tripartite domain structure including a C-terminal LRR
(leucine-rich repeats), a central nucleotide-binding
site (NBS) domain or NACHT (for neuronal apoptosis
inhibitor protein, CIITA, HET-E and TP1), and an
N-terminal protein-protein interaction domain, which is
a Pyrin domain in the case of NALPs. The NBS-LRR family
is also referred to as the NLR (Nod-like Receptor) or
CATERPILLER (for CARD, transcription enhancer,
R-(purine)-binding, pyrin, lots of LRRs) family. NALP1
contains an additional Caspase activation and
recruitment domain (CARD) at the C-terminus. NALP1 and
NALP3 are both involved in the assembly of the
'inflammasome', a multiprotein platform which is formed
in response to infection or injury and is responsible
for caspase-1 activation and regulation of IL-1beta
maturation. NALP1-inflammasomes recognize specific
substances while NALP3-inflammasomes responds to many
diverse triggers. Mutations in the NALP3 gene are
associated with a broad spectrum of autoinflammatory
disorders including Muckle-Wells Syndrome (MWS),
familial cold autoinflammatory syndrome (FCAS), and
chronic neurologic cutaneous and articular syndrome
(CINCA). NALP12 functions as a negative regulator of
inflammation. In general, Pyrin is a subfamily of the
Death Domain (DD) superfamily and functions in several
signaling pathways. DDs are protein-protein interaction
domains found in a variety of domain architectures.
Their common feature is that they form homodimers by
self-association or heterodimers by associating with
other members of the DD superfamily including CARD and
DED (Death Effector Domain). They serve as adaptors in
signaling pathways and can recruit other proteins into
signaling complexes.
Length = 86
Score = 25.3 bits (56), Expect = 5.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 4 TASGTGLAFIIFTEAINQFPGAQIWAVLF 32
A G LA ++ + + G Q W V
Sbjct: 41 KADGEDLAELL----VEHYGGQQAWDVTL 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.146 0.452
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,413,438
Number of extensions: 578545
Number of successful extensions: 1397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 112
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.2 bits)