RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17277
         (123 letters)



>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 5   ASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFPNM 64
           A    L FI      +Q  G      L+F +LF  G+ S    ++ +   + D       
Sbjct: 317 AGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRK 376

Query: 65  RKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGLK 123
              + T  +      + M       N      D ++G   ++     E I   +I+G  
Sbjct: 377 HAVLWTAAIVFFSAHLVM-----FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 430


>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
          transcription, beta-propeller; HET: PGE PG4 MES 2PE;
          2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
          Length = 795

 Score = 26.9 bits (60), Expect = 2.0
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)

Query: 58 MKIFPNMRKEVITGILCLLCCVISMSFAHGAGNYVF 93
          M     ++K VI   L  LC  +  +F+       F
Sbjct: 1  MS---KLKKIVI--YLFFLCLGMHSAFSETPEQITF 31


>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase;
           2.40A {Bacillus anthracis str}
          Length = 308

 Score = 26.0 bits (58), Expect = 3.3
 Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)

Query: 82  MSFA--HGAGNYVFILFDSFSGNFPL 105
            SF   HG GN  +I  + F    P 
Sbjct: 24  FSFTKMHGLGN-SYIYVNMFEEQIPE 48


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.146    0.452 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,886,798
Number of extensions: 102133
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 12
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.7 bits)