RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17277
         (123 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 3   ATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKIFP 62
           A A    L FI      +Q  G      L+F +LF  G+ S    ++ +   + D     
Sbjct: 311 AKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLS 370

Query: 63  NMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIAFFECIAVSYIYGL 122
                + T  +      + M       N      D ++G   ++     E I   +I+G 
Sbjct: 371 RKHAVLWTAAIVFFSAHLVM-----FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGA 425

Query: 123 K 123
            
Sbjct: 426 D 426


>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
           4932]}
          Length = 342

 Score = 24.2 bits (51), Expect = 6.4
 Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 72  ILCLLCCVISMSFAHGAGNYV--------FILFDSFSGNFPLLIIA 109
           + CL   + ++        ++        ++L  S +G+   L+  
Sbjct: 269 LSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 314


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 24.1 bits (51), Expect = 7.1
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 1   MAATASGTGLAFIIFTEAINQFPGAQIWAVLFFLMLFTLGIDSQFGTLEGVTTSIVDMKI 60
           M   +S +   F+I     N   G+     LF + L      S+     G +   ++   
Sbjct: 200 MNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAG----SEKVGKTGASGQTLEEAK 255

Query: 61  FPNMRKEVITGILCLLCCVISMSFAHGAGNYVFILFDSFSGNFPLLIIA 109
             N     +  ++  L    S    +       IL +S  GN    +I 
Sbjct: 256 KINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLII 304


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.146    0.452 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,157
Number of extensions: 18247
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 10
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.1 bits)