BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17279
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KO2|A Chain A, Nogo66
Length = 79
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 54/68 (79%)
Query: 72 GFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLV 131
G RIYK ++QA+QK++EGHPF+ YLE ++++ + V+ + +A+ H ++T+ ELRR+FLV
Sbjct: 12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLV 71
Query: 132 EDFVDSIK 139
+D VDS+K
Sbjct: 72 DDLVDSLK 79
>pdb|2G31|A Chain A, Human Nogo-A Functional Domain: Nogo60
Length = 60
Score = 72.0 bits (175), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 47/60 (78%)
Query: 74 RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED 133
RIYK ++QA+QK++EGHPF+ YLE ++++ + V+ + +A+ H + T+ ELRR+FLV+D
Sbjct: 1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60
>pdb|2JV5|A Chain A, Nogo54
Length = 54
Score = 63.2 bits (152), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 41/54 (75%)
Query: 74 RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRR 127
RIYK ++QA+QK++EGHPF+ YLE ++++ + V+ + +A+ H + T+ ELRR
Sbjct: 1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRR 54
>pdb|1DPT|A Chain A, D-Dopachrome Tautomerase
pdb|1DPT|B Chain B, D-Dopachrome Tautomerase
pdb|1DPT|C Chain C, D-Dopachrome Tautomerase
pdb|3KAN|A Chain A, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KAN|B Chain B, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KAN|C Chain C, D-Dopachrome Tautomerase (D-Dt)MACROPHAGE MIGRATION
INHIBITORY FACTOR 2 (Mif2) Complexed With Inhibitor
4-Ipp
Length = 117
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 95 YLELDISLPADKVKAATEAAISHADATLL 123
+LELD +LPA++V A E + A A++L
Sbjct: 2 FLELDTNLPANRVPAGLEKRLCAAAASIL 30
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 IESVLFWLPGERLDHYA-TEAVESLVYWRDPK 34
+E+V LPGE+++ Y TEA+ SL Y R PK
Sbjct: 289 LETVHQHLPGEKVNGYGTTEAMNSL-YMRQPK 319
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 IESVLFWLPGERLDHYA-TEAVESLVYWRDPK 34
+E+V LPGE+++ Y TEA+ SL Y R PK
Sbjct: 289 LETVHQHLPGEKVNAYGTTEAMNSL-YMRQPK 319
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 IESVLFWLPGERLDHYA-TEAVESLVYWRDPK 34
+E+V LPGE+++ Y TEA+ SL Y R PK
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSL-YMRQPK 319
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 IESVLFWLPGERLDHYA-TEAVESLVYWRDPK 34
+E+V LPGE+++ Y TEA+ SL Y R PK
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSL-YMRQPK 319
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 4 IESVLFWLPGERLDHYA-TEAVESLVYWRDPK 34
+E+V LPGE+++ Y TEA+ SL Y R PK
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSL-YMRQPK 319
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 4 IESVLFWLPGERLDHYATEAVESLVYWRDPK 34
+E+V LPGE+++ Y T + +Y R PK
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAXNSLYXRQPK 319
>pdb|3KER|A Chain A, D-Dopachrome Tautomerase (D-Dt) MACROPHAGE MIGRATION
INHIBITORY Factor 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KER|B Chain B, D-Dopachrome Tautomerase (D-Dt) MACROPHAGE MIGRATION
INHIBITORY Factor 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KER|C Chain C, D-Dopachrome Tautomerase (D-Dt) MACROPHAGE MIGRATION
INHIBITORY Factor 2 (Mif2) Complexed With Inhibitor
4-Ipp
pdb|3KER|D Chain D, D-Dopachrome Tautomerase (D-Dt) MACROPHAGE MIGRATION
INHIBITORY Factor 2 (Mif2) Complexed With Inhibitor
4-Ipp
Length = 117
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 95 YLELDISLPADKVKAATEAAISHADATLLE 124
++EL+ +LPA ++ A E + A AT+L+
Sbjct: 2 FVELETNLPASRIPAGLENRLCAATATILD 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,904,259
Number of Sequences: 62578
Number of extensions: 161388
Number of successful extensions: 326
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 11
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)