BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17279
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99P72|RTN4_MOUSE Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
Length = 1162
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 131/176 (74%), Gaps = 4/176 (2%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG SL +L+SL +S++SV A +AL +L I FRIYK ++QA+QK+
Sbjct: 978 LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1037
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPF+ YLE ++++ + V+ + +A+ H ++T+ ELRR+FLV+D VDS+KF +++W
Sbjct: 1038 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWV 1097
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANL----EVVQGKIAEITSK 198
FTYVG+ FNGLTL+I+ ++LF++P +YE ++A ID L + V+ +A+I +K
Sbjct: 1098 FTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAK 1153
>sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2
Length = 1192
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 120/156 (76%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG SL +L+SL +S++SV A +AL +L I FRIYK ++QA+QK+
Sbjct: 1008 LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1067
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPF+ YLE ++++ + V+ + +A+ H + T+ ELRR+FLV+D VDS+KF +++W
Sbjct: 1068 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWV 1127
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
FTYVG+ FNGLTL+I+ ++LF++P +YE ++A ID
Sbjct: 1128 FTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163
>sp|Q5J6M8|RTN3A_XENLA Reticulon-3-A OS=Xenopus laevis GN=rtn3-a PE=2 SV=2
Length = 214
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 123/176 (69%)
Query: 23 AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQA 82
AV L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L I +R+YKS+LQA
Sbjct: 25 AVRDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLTVTISYRVYKSVLQA 84
Query: 83 VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
VQKT+EGHPFK LE DI+L +D + A A+++H + L + R+FLV+D VDS+K +
Sbjct: 85 VQKTDEGHPFKPLLEKDITLSSDSFQKALTASLAHVNHALKYIVRLFLVDDLVDSLKLAL 144
Query: 143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
++W TYVG+ FNG+TL+I+G + FT P VYE K ID + +V ++ IT K
Sbjct: 145 LMWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQIDHYVSLVHSQVKSITEK 200
>sp|A7MC64|RTN1_XENTR Reticulon-1 OS=Xenopus tropicalis GN=rtn1 PE=2 SV=2
Length = 764
Score = 177 bits (448), Expect = 5e-44, Method: Composition-based stats.
Identities = 89/188 (47%), Positives = 131/188 (69%)
Query: 11 LPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGA 70
LP + L + L+YWRD K +G VFG L +L SL +S++SV+A LAL L
Sbjct: 565 LPLKPLPFLSKRKAIELLYWRDIKQTGIVFGSVLLMLFSLTQFSVVSVIAYLALAALSAT 624
Query: 71 IGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFL 130
I FRIYKS+LQAVQKT+EGHPFK YL+++ISL ++++ T+ ++ ++ + ELRR+FL
Sbjct: 625 ISFRIYKSVLQAVQKTDEGHPFKSYLDMEISLSQEQIQKYTDCLQAYTNSIVKELRRLFL 684
Query: 131 VEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQG 190
V+D VDS+KF +++W TYVG+ FNGLTL+I+ V++F+LP VY+ +A ID L +V+
Sbjct: 685 VQDLVDSLKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQIDQYLGLVRT 744
Query: 191 KIAEITSK 198
+ I +K
Sbjct: 745 NMNTIVTK 752
>sp|Q68EW1|RTN3B_XENLA Reticulon-3-B OS=Xenopus laevis GN=rtn3-b PE=2 SV=1
Length = 214
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 123/182 (67%)
Query: 17 DHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIY 76
D + AV L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L I FR+Y
Sbjct: 19 DKGSGCAVRDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLSVTISFRVY 78
Query: 77 KSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVD 136
KS+LQAVQKT EGHPFK LE DI+L +D + ++++H + L + R+FLVED VD
Sbjct: 79 KSVLQAVQKTEEGHPFKPLLEKDIALSSDSFQKGLSSSLAHVNHALKSIVRLFLVEDLVD 138
Query: 137 SIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEIT 196
S+K +++W TY+G+ FNG+TL+I+G + FT P VYE K ID + +V ++ IT
Sbjct: 139 SLKLALLMWLMTYIGAVFNGITLLILGVLLAFTTPLVYEKYKVQIDHYVSLVHSQVKSIT 198
Query: 197 SK 198
K
Sbjct: 199 EK 200
>sp|Q9JK11|RTN4_RAT Reticulon-4 OS=Rattus norvegicus GN=Rtn4 PE=1 SV=1
Length = 1163
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 120/156 (76%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG SL +L+SL +S++SV A +AL +L I FRIYK ++QA+QK+
Sbjct: 979 LLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 1038
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPF+ YLE ++++ + V+ + +A+ H ++T+ ELRR+FLV+D VDS+KF +++W
Sbjct: 1039 DEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWV 1098
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
FTYVG+ FNGLTL+I+ ++LF++P +YE ++ ID
Sbjct: 1099 FTYVGALFNGLTLLILALISLFSIPVIYERHQVQID 1134
>sp|Q28D16|RTN3_XENTR Reticulon-3 OS=Xenopus tropicalis GN=rtn3 PE=2 SV=1
Length = 213
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 122/176 (69%)
Query: 23 AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQA 82
AV+ L+YWRD K SG VFG ++ +L+SLA +S+ISV++ L L +L I +R+YKS+LQA
Sbjct: 24 AVQDLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLAVTISYRVYKSVLQA 83
Query: 83 VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
VQKT+EGHPFK LE DI+L +D + A +++H + L + R+FLVED VDS+K +
Sbjct: 84 VQKTDEGHPFKPLLEKDIALSSDAFQKALSTSLAHVNHALKYIVRLFLVEDLVDSLKLAL 143
Query: 143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
++W TYVG+ FNG+TL+I+G + FT P VYE K ID + +V + IT K
Sbjct: 144 LMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKSITEK 199
>sp|Q6IFY7|RTN1A_XENLA Reticulon-1-A OS=Xenopus laevis GN=rtn1-a PE=2 SV=1
Length = 207
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Query: 18 HYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYK 77
++ +A++ L+YWRD K +G VFG L +L SL +S++SV+A LAL L I FRIYK
Sbjct: 16 NWKCQAID-LLYWRDIKQTGIVFGSVLLMLFSLIQFSVVSVMAYLALAALSATISFRIYK 74
Query: 78 SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDS 137
S+LQAVQKT+EGHPFK YL+++ISL ++++ T+ + ++ ELRR+FLV+D VDS
Sbjct: 75 SVLQAVQKTDEGHPFKSYLDMEISLSQEQIQKYTDCLQVYTNSIAKELRRLFLVQDLVDS 134
Query: 138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
+KF +++W TYVG+ FNGLTL+I+ V++F+LP VY+ +A ID L +V+ + I +
Sbjct: 135 LKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQIDQYLGLVRTNMNTIMT 194
Query: 198 K 198
K
Sbjct: 195 K 195
>sp|Q5MY90|RTN1B_XENLA Reticulon-1-B OS=Xenopus laevis GN=rtn1-b PE=2 SV=1
Length = 752
Score = 171 bits (433), Expect = 3e-42, Method: Composition-based stats.
Identities = 92/196 (46%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 3 GIESVLFWLPGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANL 62
G+ S+L P L + +A++ L+YWRD K +G VFG L +L SL +S++SV+A L
Sbjct: 549 GMTSILGPKP---LTFFKKKAID-LLYWRDVKQTGIVFGSILLMLFSLTLFSVVSVIAYL 604
Query: 63 ALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATL 122
AL L I FRIYKS+LQAVQKT+EGHPFK YL+++ISL ++++ T + ++
Sbjct: 605 ALAALSATISFRIYKSVLQAVQKTDEGHPFKSYLDIEISLSQEQIQKYTGCFQLYTNSIA 664
Query: 123 LELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
ELRR+FLV+D VDS+KF +++W TYVG+ FNGLTL+I+ V++F+LP VY+ +A ID
Sbjct: 665 KELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLIMAVVSMFSLPVVYDKYQAQID 724
Query: 183 ANLEVVQGKIAEITSK 198
L +V+ + I +K
Sbjct: 725 QYLGLVRTNMNIIVTK 740
>sp|Q5IS59|RTN1_PANTR Reticulon-1 OS=Pan troglodytes GN=RTN1 PE=2 SV=1
Length = 776
Score = 171 bits (432), Expect = 4e-42, Method: Composition-based stats.
Identities = 90/172 (52%), Positives = 126/172 (73%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG L +L SL +S++SVVA LAL L I FRIYKS+LQAVQKT
Sbjct: 592 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 651
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPFK YLEL+I+L ++++ T+ + ++TL ELRR+FLV+D VDS+KF +++W
Sbjct: 652 DEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 711
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
TYVG+ FNGLTL+++ V++FTLP VY ++A ID L +V+ I + +K
Sbjct: 712 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAK 763
>sp|Q16799|RTN1_HUMAN Reticulon-1 OS=Homo sapiens GN=RTN1 PE=1 SV=1
Length = 776
Score = 171 bits (432), Expect = 4e-42, Method: Composition-based stats.
Identities = 90/172 (52%), Positives = 126/172 (73%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG L +L SL +S++SVVA LAL L I FRIYKS+LQAVQKT
Sbjct: 592 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 651
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPFK YLEL+I+L ++++ T+ + ++TL ELRR+FLV+D VDS+KF +++W
Sbjct: 652 DEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 711
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
TYVG+ FNGLTL+++ V++FTLP VY ++A ID L +V+ I + +K
Sbjct: 712 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAK 763
>sp|Q64548|RTN1_RAT Reticulon-1 OS=Rattus norvegicus GN=Rtn1 PE=2 SV=1
Length = 777
Score = 170 bits (431), Expect = 5e-42, Method: Composition-based stats.
Identities = 89/172 (51%), Positives = 126/172 (73%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG L +L SL +S++SVVA LAL L I FRIYKS+LQAVQKT
Sbjct: 593 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 652
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPFK YLEL+I+L ++++ T+ + ++TL ELRR+FLV+D VDS+KF +++W
Sbjct: 653 DEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 712
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
TYVG+ FNGLTL+++ V++FTLP VY ++A +D L +V+ I + +K
Sbjct: 713 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAK 764
>sp|Q8K0T0|RTN1_MOUSE Reticulon-1 OS=Mus musculus GN=Rtn1 PE=1 SV=1
Length = 780
Score = 170 bits (431), Expect = 5e-42, Method: Composition-based stats.
Identities = 89/172 (51%), Positives = 126/172 (73%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKT 86
L+YWRD K +G VFG L +L SL +S++SVVA LAL L I FRIYKS+LQAVQKT
Sbjct: 596 LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKT 655
Query: 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWT 146
+EGHPFK YLEL+I+L ++++ T+ + ++TL ELRR+FLV+D VDS+KF +++W
Sbjct: 656 DEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWL 715
Query: 147 FTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
TYVG+ FNGLTL+++ V++FTLP VY ++A +D L +V+ I + +K
Sbjct: 716 LTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAK 767
>sp|Q6RJR6|RTN3_RAT Reticulon-3 OS=Rattus norvegicus GN=Rtn3 PE=1 SV=1
Length = 940
Score = 169 bits (429), Expect = 8e-42, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 119/175 (68%)
Query: 24 VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
V L++WRD K +G VFG +L +L+SLA +S+ISVV+ L L +L I FR+YKS++QAV
Sbjct: 752 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 811
Query: 84 QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
QK+ EGHPFK YL++DI+L ++ + AA+ H + L + R+FLVED VDS+K +
Sbjct: 812 QKSEEGHPFKAYLDVDITLSSEAFHSYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 871
Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+W TYVG+ FNG+TL+I+ + +F++P VYE K ID + + + + I K
Sbjct: 872 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEK 926
>sp|Q9ES97|RTN3_MOUSE Reticulon-3 OS=Mus musculus GN=Rtn3 PE=1 SV=2
Length = 964
Score = 168 bits (426), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 24 VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
V L++WRD K +G VFG +L +L+SLA +S+ISVV+ L L +L I FR+YKS++QAV
Sbjct: 776 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 835
Query: 84 QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
QK+ EGHPFK YL++DI+L ++ AA+ H + L + R+FLVED VDS+K +
Sbjct: 836 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 895
Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+W TYVG+ FNG+TL+I+ + +F++P VYE K ID + + + + I K
Sbjct: 896 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEK 950
>sp|O95197|RTN3_HUMAN Reticulon-3 OS=Homo sapiens GN=RTN3 PE=1 SV=2
Length = 1032
Score = 168 bits (426), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/176 (46%), Positives = 119/176 (67%)
Query: 23 AVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQA 82
+V L++WRD K +G VFG +L +L+SLA +S+ISVV+ L L +L I FRIYKS++QA
Sbjct: 843 SVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 902
Query: 83 VQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVI 142
VQK+ EGHPFK YL++DI+L ++ AA+ H + L + R+FLVED VDS+K +
Sbjct: 903 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 962
Query: 143 ILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+W TYVG+ FNG+TL+I+ + +F++P VYE K ID + + + + I K
Sbjct: 963 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEK 1018
>sp|Q08D83|RTN3_BOVIN Reticulon-3 OS=Bos taurus GN=RTN3 PE=2 SV=1
Length = 256
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 121/180 (67%)
Query: 19 YATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKS 78
++T V L++WRD K +G VFG +L +L+SLA +S+ISVV+ L L +L I FR+YKS
Sbjct: 63 FSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKS 122
Query: 79 ILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSI 138
++QAVQK+ EGHPFK YL++DI+L ++ AA+ H + L + R+FLVED VDS+
Sbjct: 123 VIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLVDSL 182
Query: 139 KFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
K + +W TYVG+ FNG+TL+I+ + +F++P VYE K ID + + + + I K
Sbjct: 183 KLAVFMWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQIDHYVGIARDQTKSIVEK 242
>sp|Q5RBL9|RTN3_PONAB Reticulon-3 OS=Pongo abelii GN=RTN3 PE=2 SV=1
Length = 236
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 20 ATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSI 79
++ AV L++WRD K +G VFG +L +L+SLA +S+ISVV+ L L +L I FRIYKS+
Sbjct: 44 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSV 103
Query: 80 LQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIK 139
+QAVQK+ EGHPFK YL++DI+L ++ AA+ H + L + R+FLVED VDS+K
Sbjct: 104 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLK 163
Query: 140 FVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+ +W TYVG+ FNG+TL+I+ + +F++P VYE K ID + + + + I K
Sbjct: 164 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEK 222
>sp|O70622|RTN2_MOUSE Reticulon-2 OS=Mus musculus GN=Rtn2 PE=1 SV=1
Length = 471
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 119/175 (68%)
Query: 24 VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
V L+YW+D + SGAVF +A L+ L ++S++SV A+LALL L I R+Y+ +LQAV
Sbjct: 272 VADLLYWKDTRTSGAVFTGLMASLLCLLHFSIVSVAAHLALLGLCATISLRVYRKVLQAV 331
Query: 84 QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
+ + +PF+ YL++D++L ++ + ++ SH +T +LR FLVED VDS+K ++
Sbjct: 332 HRGDGTNPFQAYLDMDLTLTREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLALL 391
Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+ T+VG+ FNGLTLVI+G VALFT+P +Y ++A ID + +V +++ I +K
Sbjct: 392 FYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAK 446
>sp|O75298|RTN2_HUMAN Reticulon-2 OS=Homo sapiens GN=RTN2 PE=1 SV=1
Length = 545
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 115/175 (65%)
Query: 24 VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
V L+YW+D + SG VF + L+ L ++S++SV A+LALL+L G I R+Y+ +LQAV
Sbjct: 345 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 404
Query: 84 QKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVII 143
+ + +PF+ YL++D++L ++ + + S + +LR FLVED VDS+K ++
Sbjct: 405 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 464
Query: 144 LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+ T+VG+ FNGLTL+I+G + LFT+P +Y ++A ID + +V +++ I +K
Sbjct: 465 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAK 519
>sp|Q4FZ76|RTN2_XENLA Reticulon-2 OS=Xenopus laevis GN=rtn2 PE=2 SV=1
Length = 321
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 22 EAVESLVYWRDPKIS-GAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSIL 80
AV+ L+YWRD +S G + GV+L+ L+ L+ +S+ISV A L++L + R+Y +L
Sbjct: 132 RAVKDLLYWRDTLLSTGCLTGVTLS-LLCLSQFSVISVFAYGCLIILSVTLTLRLYTKLL 190
Query: 81 QAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKF 140
A+++ N +PF+ YL+ D+ L + + A S A TL LR +FLVE+ DS+KF
Sbjct: 191 HALKRGNGANPFQYYLDTDLKLTTKQAEEIVARAFSLASTTLCTLRSLFLVEELKDSLKF 250
Query: 141 VIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
++I++ TYVG+ FNG+T++++ + FT P +Y+ ++ +D + +V K+ SK
Sbjct: 251 LVIVYLLTYVGAVFNGITVLLLCVIGAFTFPILYKQHQTQVDHYVSLVSKKVNAFRSK 308
>sp|Q4FZ58|RTN2_XENTR Reticulon-2 OS=Xenopus tropicalis GN=rtn2 PE=2 SV=2
Length = 321
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Query: 22 EAVESLVYWRDPKIS-GAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSIL 80
AV+ L+YWRD +S G + GV+L+ L+ L+ +S+ISV A L++L + R+Y +L
Sbjct: 132 RAVKDLLYWRDILLSAGCLTGVTLS-LLCLSQFSVISVFAYGCLIILSVTLTLRLYTKLL 190
Query: 81 QAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKF 140
A+++ N +PF+ YL+ D+ L + + T +S T+ LR +FLVE+ DS+KF
Sbjct: 191 HALKRGNGANPFQYYLDADLKLTTKQAEEITARVLSLLSTTICTLRSLFLVEELKDSLKF 250
Query: 141 VIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
++I++ TYVG+ FNG+T++++ + FT P +Y+ ++ +D + +V K SK
Sbjct: 251 LVIIYLLTYVGAVFNGITVLLLCVIGAFTFPILYKQHQTQVDHYVSLVSKKGNAFRSK 308
>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1
SV=1
Length = 255
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
WRD K+SGAV GV+ A VL L Y L+S++ ++++L L G ++ + + KT+
Sbjct: 74 WRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLF---LWSNAHTLINKTS 130
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTF 147
P +I +P + + + + + LR I L D + V+ LW
Sbjct: 131 PQIP-------EIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWII 183
Query: 148 TYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
+ VG+WFN LTLV I FV L T+P +YE ++ +D
Sbjct: 184 SVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANL------ALLVLVGAIGFRIYKSILQ 81
WRD K+S +V GV+ A VL L Y +S+V ++ AL +L A F + +
Sbjct: 74 WRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAF-----MNK 128
Query: 82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
K E H +E+ + +S A + + + LR I L D + V
Sbjct: 129 TPPKIPEIHIKEEHFLMIVS-----------ALRNELNQAFVILRSIALGRDLKKFLMVV 177
Query: 142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
LW + VG+WFN LTLV I FV L T+P +YE ++ +D
Sbjct: 178 FGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218
>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1
SV=1
Length = 257
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
WR+ K+SG V G A VL L Y L++ + + A+ L ++ + + K+
Sbjct: 74 WRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALF---LWSNACTFIHKST 130
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTF 147
P ++ +P D + + L LR I +D I + LW
Sbjct: 131 PHIP-------EVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVL 183
Query: 148 TYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDA 183
+ +GS +N LTL V LFT+P +YE + +DA
Sbjct: 184 SIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDA 219
>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1
SV=1
Length = 255
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 26/162 (16%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
WR+ K+SG V G + +L L Y+L+++ ++++L L A+ F ++ S + K+
Sbjct: 70 WRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILAL--AVLF-LWSSASTFIHKSP 126
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLV-EDFV---DSIKFVII 143
P ++ +P D V + A +E+ R F V D D KF+++
Sbjct: 127 LHIP-------EVHIPEDVV-------LQLASGLRIEINRGFTVLRDIASGRDLKKFLLV 172
Query: 144 ---LWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATID 182
LW + VGS N LTL+ I V LFT+P +YE + +D
Sbjct: 173 IAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214
>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3
SV=2
Length = 244
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 98 LDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGL 157
+DI +P + A A + LR I L D + + VI LW + +G+WF+ L
Sbjct: 133 MDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFL 192
Query: 158 TLVIIGFVALFTLPKVYENNKATIDA 183
+L+ I FV + T+P +YE + ID
Sbjct: 193 SLLYICFVLIHTVPMLYEKYEDEIDP 218
>sp|Q56X72|RTNLS_ARATH Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2
SV=2
Length = 487
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAY-----YSLISVVANLALLVLVGAIGFRIYKSILQ 81
LV WRD S VFG ++IS +Y +S ISVVA + L+ L + F + KS++
Sbjct: 233 LVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAYMGLIYL--GLMF-VLKSLIH 289
Query: 82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
E H E D VK + + + +L +LR +F D ++K
Sbjct: 290 RGMVEEERHKVVGVREED-------VKRMLRLIMPYLNESLHQLRALF-SGDPSTTLKMG 341
Query: 142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVY 174
++L+ GS L GF+ FT+PK++
Sbjct: 342 VVLFVLARCGSSITLWNLAKFGFLGAFTIPKIF 374
>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1
SV=1
Length = 275
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
W++ K+SG V G + A V+ L Y L++++ ++ ++VL A+ F ++ + + K+
Sbjct: 95 WKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVL--AVLF-LWSNATMFINKSP 151
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTF 147
P ++ +P + + + LR I D + + LW
Sbjct: 152 PKIP-------EVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVL 204
Query: 148 TYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDA 183
+ +G FN LTL I V LFT+P Y+ + +D
Sbjct: 205 SILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDP 240
>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1
SV=1
Length = 271
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 30 WRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
W+D K+SG VFG + VL L Y L++++ ++ ++ L A+ F ++ + + K+
Sbjct: 91 WKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVAL--AVLF-LWSNATMFIHKSP 147
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTF 147
P ++ +P + + + + LR I D + + LW
Sbjct: 148 PKIP-------EVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVL 200
Query: 148 TYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDA 183
+ +G ++ LTL I V LFT+P Y+ + +D+
Sbjct: 201 SILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDS 236
>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2
SV=1
Length = 200
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 23 AVESLVYWRDPKISGAVF----GVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKS 78
+V L+ WR+ +GAV L A Y+L+S V+N+ LL++ AI F
Sbjct: 21 SVADLLLWRNR--TGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLV--AIFF----- 71
Query: 79 ILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSI 138
L A T P ++I P + A + + L I + + + +
Sbjct: 72 -LWAKSATVLNRPLPPVPNMEI--PEEFANKAADDLRVWINYVLSIASDITIARNPIRLL 128
Query: 139 KFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 198
+ ++LW +YVG+ N LTLV IG + + P VYE + ID + + I+ K
Sbjct: 129 QVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVRNISRK 188
>sp|Q04947|RTN1_YEAST Reticulon-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RTN1 PE=1 SV=1
Length = 295
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVL--VGAIGFRIYKSILQAVQ 84
L+ WR+P +G FG SL L+ L +LI+ +A +L G+I F + K L
Sbjct: 23 LLLWRNPVQTGKYFGGSLLALLILKKVNLITFFLKVAYTILFTTGSIEF-VSKLFLGQGL 81
Query: 85 KTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIIL 144
T G KE + A +K + A+ +R+ + + K + L
Sbjct: 82 ITKYGP--KECPNI-----AGFIKPHIDEALKQLPVFQAHIRKTVFAQVPKHTFKTAVAL 134
Query: 145 WTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQG 190
+ SWF+ T+V + + FTLP +Y + K IDA V QG
Sbjct: 135 FLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDAT--VAQG 178
>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1
SV=1
Length = 247
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 30 WRDPKISGAVF--GVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN 87
WR+ KIS +V ++ VL + +S+V +L+G I ++ + + ++
Sbjct: 67 WRNKKISASVLMGATAIWVLFEWINFHFLSLVC---YALLLGMIAQFVWSNASGFLNRSQ 123
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTF 147
P + LP D A + LL L+ + + + VI LW
Sbjct: 124 SRVP-------RLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVA 176
Query: 148 TYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLE 186
VGS N LT++ IGFV T+P +YE + +D ++
Sbjct: 177 AMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 215
>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2
SV=1
Length = 201
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 23 AVESLVYWRDPKISGAVFGVS--LAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSIL 80
+V L+ W++ + + G + L L YS V N LL +V I F KS +
Sbjct: 13 SVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVV--ILFLWAKSAI 70
Query: 81 QAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKF 140
+ P E E + + AD ++ ++ A R I++ + +
Sbjct: 71 -LFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVA-------REIYVGRNAKQLFRV 122
Query: 141 VIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANL----EVVQGKIAEIT 196
++LWT ++VG++ N LT++ +G V +P +YE + ID L V+Q + +I
Sbjct: 123 SVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKID 182
Query: 197 SK 198
+
Sbjct: 183 ER 184
>sp|Q6DR04|RTNLQ_ARATH Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2
SV=1
Length = 431
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 22 EAVESLVYWRDPKISGAVFGVSLAVLISLAY-----YSLISVVANLALLVLVGAIGFRIY 76
E + LV WRD S FG +S + +S+ S V+NL L++L G+ +
Sbjct: 166 EIISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSF---LS 222
Query: 77 KSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVD 136
++ Q +K + E D+ A +V AT IS E F
Sbjct: 223 NTLCQ--RKNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTS------------ELFSG 268
Query: 137 SIKFVIILWTFTYVGSWFNGL----TLVIIGFVALFTLPKVYENNKATIDANLEVVQGKI 192
+ + F +G+ + L L GF FT+PK+Y I +E V+ +I
Sbjct: 269 EPSMTLKVTPFLLLGAEYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRI 328
Query: 193 AE 194
E
Sbjct: 329 GE 330
>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2
SV=1
Length = 225
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 24 VESLVYWRDPKISGA-VFGVS-LAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQ 81
V ++ WR+PKI+ V GVS L L+ + Y+ I+++ + ++ + F I+ +
Sbjct: 39 VADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM---TSMLFFFIWST--- 92
Query: 82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED----FVDS 137
A N P + LD S K + + L +L + D F+ +
Sbjct: 93 ASDFLNWERPLIPEVVLDES----SFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTT 148
Query: 138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEITS 197
I I+ + +G++FN + L+ IGFV++ TLP +YE + +D + K+ ++
Sbjct: 149 ISLYIV----SIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYK 204
Query: 198 K 198
K
Sbjct: 205 K 205
>sp|Q5ZL36|ZFY27_CHICK Protrudin OS=Gallus gallus GN=ZFYVE27 PE=2 SV=1
Length = 406
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 19 YATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGF-RIYK 77
Y EAV ++YW +P +S +G L + L L V+A L + +G F ++ K
Sbjct: 170 YNCEAVYRVLYWENPTVSSQFYGALLGSVCILYLLPLCWVMAILNSTLFLGNSQFYQVIK 229
Query: 78 SILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADAT 121
+ +V+++ P + E LP D T S D T
Sbjct: 230 ELKASVEQSLGTKPLESAPEPAKPLPTDAPPDRTPTPTSTEDLT 273
>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2
SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 132 EDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGK 191
DF K VI LW + +GS+ + TL+ IG + T+P +Y ++ +D + +
Sbjct: 141 NDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRR 200
Query: 192 IAE 194
++
Sbjct: 201 LSH 203
>sp|A2RVT6|RTNLN_ARATH Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2
SV=2
Length = 215
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 141 VIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYEN 176
V+ LW + VG++F+ LTL+ I FV L T+P +YE
Sbjct: 138 VVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQ 173
>sp|Q12443|RTN2_YEAST Reticulon-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RTN2 PE=1 SV=1
Length = 393
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 12 PGERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAI 71
PGE T L+YW +P SGA F +L L+ L ++ISV+ + +VL +
Sbjct: 22 PGEAGHQNKT----GLIYWTNPSKSGASFAATLVSLLILRNVNVISVLLKIGYMVLFTSF 77
Query: 72 GFRIYKSIL 80
+ +L
Sbjct: 78 AVELSTKVL 86
>sp|Q8LDS3|RTNLR_ARATH Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2
SV=2
Length = 457
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 22 EAVESLVYWRDPKISGAVFGVSLAVLISLAY------YSLISVVANLALLVLVGAIGFRI 75
E + L+ WRD S FG +S + +S+ S ++ L LL L + F +
Sbjct: 193 ENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYLGLLFL--GVSF-L 249
Query: 76 YKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFV 135
++ Q V T E + E D+ A ++ T AIS E F
Sbjct: 250 SNTLRQRV--TEEARRELKLSEDDVLRIARRMLPITNLAISKTS------------ELFS 295
Query: 136 DSIKFVIILWTFTYVGSWFNGL----TLVIIGFVALFTLPKVYENNKATIDANLEVVQGK 191
+ + F +G+ + L L GF FT+PK+Y + ++ +E Q +
Sbjct: 296 GEPAMTLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRR 355
Query: 192 IAE 194
E
Sbjct: 356 FVE 358
>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2
SV=1
Length = 206
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 21 TEAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSIL 80
++ VE + WR K++ + VS + I L++Y ++ + + V ++ F ++ S+L
Sbjct: 13 SDIVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIF-LWGSLL 71
Query: 81 QAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLE--LRRIFLV----EDF 134
+ + K P LE+ + V++ L+E +R +F V E F
Sbjct: 72 RLLSKVE---PELSGLEVSEEFVVETVRSC---------RMLMEEMVRWMFRVGAESEWF 119
Query: 135 VDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGK 191
V + + V+ W + +G+ + T + IG V T+PK++E I +L ++ K
Sbjct: 120 VFA-RTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDK 175
>sp|Q9UKK3|PARP4_HUMAN Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=PARP4 PE=1 SV=3
Length = 1724
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 99 DISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFT 148
D LP K ++T+A + A L+ L + + +D++ VI+ T+T
Sbjct: 597 DYQLPDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQVIVFQTYT 646
>sp|Q9ZU43|RTNLO_ARATH Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2
SV=2
Length = 191
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 105 DKVKAATEAAISHADATLLELRRIFLVED---FVDSIKFVIILWTFTYVGSWFNGLTLVI 161
++ + +A S + LL L I +D F+ +I +V I++ +GS+ + LT++
Sbjct: 83 NQPDSPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYN---IGSYISLLTILY 139
Query: 162 IGFVALFTLPKVYENNKATIDANLEVVQGKIAE 194
I V T+P VY + ID+ + GK++E
Sbjct: 140 ICLVCSMTIPVVYMQFQELIDSFM----GKVSE 168
>sp|Q8Y5J6|MSCL_LISMO Large-conductance mechanosensitive channel OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 /
EGD-e) GN=mscL PE=3 SV=1
Length = 128
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGA---------IGFRIYK 77
LV +RD + G V +++AV+I A+ ++S + + ++ LVG + F++ K
Sbjct: 5 LVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMPLVGVLLGGLDFTDLSFKVGK 64
Query: 78 SILQ 81
S++Q
Sbjct: 65 SVIQ 68
>sp|B8DH65|MSCL_LISMH Large-conductance mechanosensitive channel OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=mscL PE=3
SV=1
Length = 128
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 27 LVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGA---------IGFRIYK 77
LV +RD + G V +++AV+I A+ ++S + + ++ LVG + F++ K
Sbjct: 5 LVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMPLVGVLLGGLDFTDLSFKVGK 64
Query: 78 SILQ 81
S++Q
Sbjct: 65 SVIQ 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,992,215
Number of Sequences: 539616
Number of extensions: 2268263
Number of successful extensions: 7112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7059
Number of HSP's gapped (non-prelim): 61
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)