Query psy17279
Match_columns 198
No_of_seqs 109 out of 473
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:54:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792|consensus 100.0 5.6E-39 1.2E-43 266.2 19.2 174 18-198 37-213 (230)
2 PF02453 Reticulon: Reticulon; 100.0 4.6E-38 1E-42 248.8 -7.7 167 24-194 1-169 (169)
3 PF04842 DUF639: Plant protein 97.6 0.0024 5.1E-08 60.5 14.5 141 22-171 504-649 (683)
4 KOG1792|consensus 94.6 0.083 1.8E-06 44.3 5.5 73 124-196 42-137 (230)
5 PF08372 PRT_C: Plant phosphor 93.7 0.5 1.1E-05 37.3 8.2 67 111-177 71-137 (156)
6 PF06398 Pex24p: Integral pero 93.2 1.5 3.2E-05 38.7 11.3 28 22-49 30-57 (359)
7 PF08372 PRT_C: Plant phosphor 88.6 0.83 1.8E-05 36.1 4.5 24 22-45 83-106 (156)
8 PF02453 Reticulon: Reticulon; 62.6 2.6 5.7E-05 32.5 0.2 22 22-43 98-119 (169)
9 COG0053 MMT1 Predicted Co/Zn/C 61.2 1.1E+02 0.0024 26.5 10.9 79 104-183 130-210 (304)
10 PF13198 DUF4014: Protein of u 59.3 41 0.00088 23.0 5.4 38 158-195 32-69 (72)
11 PF06363 Picorna_P3A: Picornav 57.6 69 0.0015 23.1 6.6 63 87-161 27-89 (100)
12 PF01484 Col_cuticle_N: Nemato 53.1 52 0.0011 20.2 5.6 32 164-195 15-49 (53)
13 KOG3488|consensus 52.7 38 0.00082 23.3 4.4 35 124-158 38-72 (81)
14 KOG0058|consensus 44.5 3.2E+02 0.007 26.9 13.5 37 159-195 293-329 (716)
15 PRK06433 NADH dehydrogenase su 43.2 1.2E+02 0.0026 21.5 6.7 36 26-61 21-59 (88)
16 PF10256 Erf4: Golgin subfamil 41.2 1.4E+02 0.003 21.8 7.5 20 171-190 76-95 (118)
17 PF11696 DUF3292: Protein of u 40.8 98 0.0021 30.0 6.8 54 99-152 85-142 (642)
18 PF12548 DUF3740: Sulfatase pr 40.8 36 0.00079 26.5 3.4 32 165-196 95-126 (145)
19 KOG1726|consensus 37.2 2.5E+02 0.0054 23.6 9.7 22 174-195 93-114 (225)
20 PRK11677 hypothetical protein; 34.8 1.4E+02 0.0029 23.0 5.6 37 159-195 9-48 (134)
21 PF00664 ABC_membrane: ABC tra 34.6 2.2E+02 0.0047 22.1 11.1 17 165-181 152-168 (275)
22 PF10112 Halogen_Hydrol: 5-bro 30.4 2.8E+02 0.0061 22.1 8.8 57 139-195 16-87 (199)
23 PF15027 DUF4525: Domain of un 29.2 88 0.0019 24.0 3.7 10 71-81 19-28 (138)
24 COG5038 Ca2+-dependent lipid-b 26.5 3.1E+02 0.0067 28.6 7.9 51 135-187 159-209 (1227)
25 KOG0054|consensus 25.3 8.7E+02 0.019 26.1 17.0 83 107-194 301-389 (1381)
26 KOG0860|consensus 25.0 79 0.0017 23.8 2.7 24 175-198 32-55 (116)
27 PF14800 DUF4481: Domain of un 24.3 4.7E+02 0.01 23.0 7.7 23 172-194 113-135 (308)
28 PF04842 DUF639: Plant protein 23.7 3.2E+02 0.007 26.7 7.2 56 119-178 500-555 (683)
29 PF05062 RICH: RICH domain; I 22.0 94 0.002 21.9 2.5 24 174-197 4-27 (82)
30 KOG3716|consensus 21.3 6.7E+02 0.014 24.8 8.7 30 35-64 98-128 (764)
31 COG2165 PulG Type II secretory 20.6 3.2E+02 0.0069 19.6 5.5 25 156-180 16-40 (149)
32 PHA02677 hypothetical protein; 20.4 2.7E+02 0.0059 20.5 4.7 33 156-188 5-37 (108)
33 PF09163 Form-deh_trans: Forma 20.1 94 0.002 19.2 1.9 14 29-42 7-20 (44)
No 1
>KOG1792|consensus
Probab=100.00 E-value=5.6e-39 Score=266.19 Aligned_cols=174 Identities=34% Similarity=0.567 Sum_probs=156.3
Q ss_pred CCCCcchhhhccccCCcchhHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCccc
Q psy17279 18 HYATEAVESLVYWRDPKISGAVFGVSL--AVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQK-TNEGHPFKE 94 (198)
Q Consensus 18 ~~g~~~v~dlllWrd~~~S~~vf~~~~--~~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~-~~~~~P~~~ 94 (198)
.+|||+++|+++|||+|.||.++++.+ |++++..+|+.+++.|++++..+. +.| .|++...+.+| +++. .
T Consensus 37 ~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~--i~F-~w~~~~~~~~k~~~~~----~ 109 (230)
T KOG1792|consen 37 VLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALA--ILF-LWSKAVTFLNKKSEPG----A 109 (230)
T ss_pred cCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHH-HHHHHHHHHhcCCCcc----c
Confidence 488999999999999999999999987 688888999999999998877776 556 44554454554 5442 4
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHH
Q psy17279 95 YLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVY 174 (198)
Q Consensus 95 yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y 174 (198)
|++.++++|||.+++.+++++.++|+.+.++|++++++|+++++|+++.+|+++++|+|||+.|++++|++++||+|.+|
T Consensus 110 ~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~Y 189 (230)
T KOG1792|consen 110 YLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLY 189 (230)
T ss_pred cCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchh
Confidence 55579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhcC
Q psy17279 175 ENNKATIDANLEVVQGKIAEITSK 198 (198)
Q Consensus 175 ~~~q~~ID~~v~~~~~~i~~~~~~ 198 (198)
|+|||+||++++++.++++++++|
T Consensus 190 Eky~d~ID~~~~~~~~~~k~~~~~ 213 (230)
T KOG1792|consen 190 EKYEDQIDPYLGKVMEELKKHYRK 213 (230)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=4.6e-38 Score=248.80 Aligned_cols=167 Identities=36% Similarity=0.669 Sum_probs=49.7
Q ss_pred hhhhccccCCcchhHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccccc
Q psy17279 24 VESLVYWRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTNEGHPFKEYLELDIS 101 (198)
Q Consensus 24 v~dlllWrd~~~S~~vf~~~~~--~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~P~~~yl~~~~~ 101 (198)
|+|+++||||++||++|++++. +++...++|++|++|+++++.+++++.++..+++ +++.+.+ |++++.+++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 76 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKV---LSRSPKG-PFKEPLDYDLE 76 (169)
T ss_dssp ----------------------------------------------------THCCCT---CCHHHHC-TTHHHHCHHHH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCC-CccCCcccccc
Confidence 6899999999999999999986 8999999999999999999999877765444443 3332212 78888888899
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhcHHHH
Q psy17279 102 LPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATI 181 (198)
Q Consensus 102 lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~q~~I 181 (198)
++||++++.++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|++||+||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I 156 (169)
T PF02453_consen 77 ISEERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI 156 (169)
T ss_dssp HCCHHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17279 182 DANLEVVQGKIAE 194 (198)
Q Consensus 182 D~~v~~~~~~i~~ 194 (198)
|++++++++|+||
T Consensus 157 d~~~~~~~~~~~k 169 (169)
T PF02453_consen 157 DQYVAKVKEKVKK 169 (169)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999885
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.58 E-value=0.0024 Score=60.53 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=90.5
Q ss_pred cchhhhccccCCcchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCccccc
Q psy17279 22 EAVESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAVQKTN-----EGHPFKEYL 96 (198)
Q Consensus 22 ~~v~dlllWrd~~~S~~vf~~~~~~L~~~~~~slis~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~-----~~~P~~~yl 96 (198)
..+.++..|+||.+|...++.....++- -++.|++-..+...+.+-++.+.-...++.. ...|.++-
T Consensus 504 ~~~~~l~~We~P~kt~~Fl~~~~~iI~r-------~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nT- 575 (683)
T PF04842_consen 504 KWLQKLASWEEPLKTLVFLALFLYIIYR-------GWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNT- 575 (683)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccH-
Confidence 6778999999999999888765543331 2333333333333333334422211111110 11121111
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q psy17279 97 ELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLP 171 (198)
Q Consensus 97 ~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP 171 (198)
.+-.+.-...-.-++......|-++-++|.|++...+..+-++++.+..++.+-.++.+.-++...++-.||-.
T Consensus 576 -vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre 649 (683)
T PF04842_consen 576 -VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE 649 (683)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112222233345666778899999999999999999999999999999999999999999999999999864
No 4
>KOG1792|consensus
Probab=94.55 E-value=0.083 Score=44.31 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=61.2
Q ss_pred HHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhc-----------------------HHH
Q psy17279 124 ELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENN-----------------------KAT 180 (198)
Q Consensus 124 ~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~-----------------------q~~ 180 (198)
+..|+++++|.+.++.+.++..++..+-..++..++..++.+.+++++..+.++ |++
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 578999999999999999999999999999999999999999888888777665 456
Q ss_pred HHHHHHHHHHHHHhHh
Q psy17279 181 IDANLEVVQGKIAEIT 196 (198)
Q Consensus 181 ID~~v~~~~~~i~~~~ 196 (198)
+++++..++.++|+.+
T Consensus 122 ~~~~a~~~~~~in~~l 137 (230)
T KOG1792|consen 122 VLALASSLRVEINQAL 137 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777654
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=93.75 E-value=0.5 Score=37.34 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhc
Q psy17279 111 TEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENN 177 (198)
Q Consensus 111 ~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~ 177 (198)
++.+.+.+....++++.++.++|+..|..+++++.+.+.+--+..+..++.+..+..++=|++-...
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 4445556667778999999999999999999999998888888888888888878888887776543
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=93.18 E-value=1.5 Score=38.72 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=21.7
Q ss_pred cchhhhccccCCcchhHHHHHHHHHHHH
Q psy17279 22 EAVESLVYWRDPKISGAVFGVSLAVLIS 49 (198)
Q Consensus 22 ~~v~dlllWrd~~~S~~vf~~~~~~L~~ 49 (198)
..+.+++.|+||..+-.++...++.++.
T Consensus 30 d~vl~il~W~~p~~t~~~L~l~t~~~l~ 57 (359)
T PF06398_consen 30 DRVLRILTWTNPDYTLSFLLLYTFLCLN 57 (359)
T ss_pred HHHHHeEEeCCCCcchHHHHHHHHHHHH
Confidence 5678999999999988887766655443
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=88.56 E-value=0.83 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=20.9
Q ss_pred cchhhhccccCCcchhHHHHHHHH
Q psy17279 22 EAVESLVYWRDPKISGAVFGVSLA 45 (198)
Q Consensus 22 ~~v~dlllWrd~~~S~~vf~~~~~ 45 (198)
+++..++.||||..|+....+.+.
T Consensus 83 ERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 83 ERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred HHHHHhhccCCccHHHHHHHHHHH
Confidence 788899999999999998877654
No 8
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=62.62 E-value=2.6 Score=32.55 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=13.3
Q ss_pred cchhhhccccCCcchhHHHHHH
Q psy17279 22 EAVESLVYWRDPKISGAVFGVS 43 (198)
Q Consensus 22 ~~v~dlllWrd~~~S~~vf~~~ 43 (198)
....+++.||||+.|..++.+.
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~l 119 (169)
T PF02453_consen 98 SWLRRLVFGEDPKKSLKVFVVL 119 (169)
T ss_dssp HHHHCCCHCT-TTGGG------
T ss_pred HHHHHHHcCccHHHHHHHHHHH
Confidence 5677999999999999976643
No 9
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=61.22 E-value=1.1e+02 Score=26.53 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhH-HHHhhcHHHH
Q psy17279 104 ADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVG-SWFNGLTLVIIGFVALFTLP-KVYENNKATI 181 (198)
Q Consensus 104 e~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg-~~~s~~tLl~i~~~~~FtvP-~~Y~~~q~~I 181 (198)
.+.+.++...+....|.-.-.....-.--|...++.+.+++- ....| .|.....=+.+++..+.+.- .++|.-++.+
T Consensus 130 ~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~ 208 (304)
T COG0053 130 KEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELM 208 (304)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555544333333333337777777777766 66666 45655555555555555544 5666667777
Q ss_pred HH
Q psy17279 182 DA 183 (198)
Q Consensus 182 D~ 183 (198)
|+
T Consensus 209 d~ 210 (304)
T COG0053 209 DA 210 (304)
T ss_pred Cc
Confidence 63
No 10
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=59.27 E-value=41 Score=23.05 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHHHHhhcHHHHHHHHHHHHHHHHhH
Q psy17279 158 TLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 158 tLl~i~~~~~FtvP~~Y~~~q~~ID~~v~~~~~~i~~~ 195 (198)
..+.+.++...++-.+.|+|.+..-...+...+|++..
T Consensus 32 ~pll~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkinpy 69 (72)
T PF13198_consen 32 SPLLFVWIIGKIIEPLFELYKDWFWNPFNALHNKINPY 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccccc
Confidence 34556677778999999999999999999999888765
No 11
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=57.63 E-value=69 Score=23.11 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CCCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy17279 87 NEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVI 161 (198)
Q Consensus 87 ~~~~P~~~yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~ 161 (198)
|.+.||..+-...-+....+.++..+.+..+++.+.+..- ..+ +.+-+++.+.+.+|.++|.+
T Consensus 27 P~~S~F~CFa~~~~~~~~~a~~kv~~W~~~k~k~~~~FV~------RNk------~W~T~~S~~tS~isIL~LV~ 89 (100)
T PF06363_consen 27 PRPSVFKCFASKVPTKIKTACDKVKSWVKNKMKSMLSFVE------RNK------AWFTVVSAVTSFISILLLVT 89 (100)
T ss_pred CCCChHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH------Hcc------hHhhHHHHHHHHHHHHHHHH
Confidence 3456777664333334445555555555555555443221 112 23445677888888877754
No 12
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=53.10 E-value=52 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHhh---cHHHHHHHHHHHHHHHHhH
Q psy17279 164 FVALFTLPKVYEN---NKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 164 ~~~~FtvP~~Y~~---~q~~ID~~v~~~~~~i~~~ 195 (198)
+.+++++|.+|.. -|++++.-++..|..-++.
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999864 4556666666666665543
No 13
>KOG3488|consensus
Probab=52.73 E-value=38 Score=23.26 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy17279 124 ELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLT 158 (198)
Q Consensus 124 ~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~t 158 (198)
..++.++-+++.-++-+++.++.+..+|.++|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34778888999999999999999999999877644
No 14
>KOG0058|consensus
Probab=44.51 E-value=3.2e+02 Score=26.91 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHHhhcHHHHHHHHHHHHHHHHhH
Q psy17279 159 LVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 159 Ll~i~~~~~FtvP~~Y~~~q~~ID~~v~~~~~~i~~~ 195 (198)
+.++.+-..+.++++|-+|.+.+-+..+.+..+.+++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~v 329 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQV 329 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677778888888887766655555544443
No 15
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=43.16 E-value=1.2e+02 Score=21.49 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=25.2
Q ss_pred hhccccCCcchhHHHHHHHH---HHHHhhhhhHHHHHHH
Q psy17279 26 SLVYWRDPKISGAVFGVSLA---VLISLAYYSLISVVAN 61 (198)
Q Consensus 26 dlllWrd~~~S~~vf~~~~~---~L~~~~~~slis~~~~ 61 (198)
-++.+|||..|+..++.... .++...+..++.+.--
T Consensus 21 ~vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi 59 (88)
T PRK06433 21 GVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQV 59 (88)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46789999999999877652 6666666665554443
No 16
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=41.16 E-value=1.4e+02 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHhhcHHHHHHHHHHHHH
Q psy17279 171 PKVYENNKATIDANLEVVQG 190 (198)
Q Consensus 171 P~~Y~~~q~~ID~~v~~~~~ 190 (198)
-..|++..+++|++++....
T Consensus 76 ~~~~~~~~~~le~~l~~~N~ 95 (118)
T PF10256_consen 76 KTHYKRKLRELEKYLEQLNE 95 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877665
No 17
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=40.79 E-value=98 Score=29.95 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=36.5
Q ss_pred ccccCHHHHH----HHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhh
Q psy17279 99 DISLPADKVK----AATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGS 152 (198)
Q Consensus 99 ~~~lse~~v~----~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~ 152 (198)
+.++|.+..+ |+--.+...+-.+...+.+|-+++++..|.-++++.++.+++.-
T Consensus 85 ~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dl 142 (642)
T PF11696_consen 85 DEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDL 142 (642)
T ss_pred cccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence 4455655544 44444555566667888899999999999988776666665443
No 18
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=40.77 E-value=36 Score=26.51 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=27.3
Q ss_pred HHHHHhHHHHhhcHHHHHHHHHHHHHHHHhHh
Q psy17279 165 VALFTLPKVYENNKATIDANLEVVQGKIAEIT 196 (198)
Q Consensus 165 ~~~FtvP~~Y~~~q~~ID~~v~~~~~~i~~~~ 196 (198)
-.++-=|.....++.+||+.++..++||+++-
T Consensus 95 ~~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LK 126 (145)
T PF12548_consen 95 NVIYQDPKAWKDHRLHIDHEIETLQDKIKNLK 126 (145)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888999999999999999999874
No 19
>KOG1726|consensus
Probab=37.20 E-value=2.5e+02 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.5
Q ss_pred HhhcHHHHHHHHHHHHHHHHhH
Q psy17279 174 YENNKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 174 Y~~~q~~ID~~v~~~~~~i~~~ 195 (198)
-.+||++||+.+..++++.-+.
T Consensus 93 ls~~E~eid~~l~~~k~~~~~~ 114 (225)
T KOG1726|consen 93 LSKHEEEIDRMLVEAKERVYDA 114 (225)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999998876554
No 20
>PRK11677 hypothetical protein; Provisional
Probab=34.75 E-value=1.4e+02 Score=23.01 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHh---hcHHHHHHHHHHHHHHHHhH
Q psy17279 159 LVIIGFVALFTLPKVYE---NNKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 159 Ll~i~~~~~FtvP~~Y~---~~q~~ID~~v~~~~~~i~~~ 195 (198)
.+++|+++.|.+-++-. +.|....+-++..+.+++++
T Consensus 9 ~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Y 48 (134)
T PRK11677 9 GLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEY 48 (134)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555433 23445555555555555443
No 21
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=34.64 E-value=2.2e+02 Score=22.12 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.5
Q ss_pred HHHHHhHHHHhhcHHHH
Q psy17279 165 VALFTLPKVYENNKATI 181 (198)
Q Consensus 165 ~~~FtvP~~Y~~~q~~I 181 (198)
...+.+|..+.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~ 168 (275)
T PF00664_consen 152 PLLFLISFIFSKKIRKL 168 (275)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccccc
Confidence 34444454444443333
No 22
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.37 E-value=2.8e+02 Score=22.10 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhc---------------HHHHHHHHHHHHHHHHhH
Q psy17279 139 KFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENN---------------KATIDANLEVVQGKIAEI 195 (198)
Q Consensus 139 k~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~---------------q~~ID~~v~~~~~~i~~~ 195 (198)
-+++..|++.+.|.-.+++--+.+|.++.+.+.....+. ++.+++.++.++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i 87 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRI 87 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 344455566665544455444444544444444333322 223456677777766654
No 23
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=29.21 E-value=88 Score=23.97 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q psy17279 71 IGFRIYKSILQ 81 (198)
Q Consensus 71 ~~~~i~~~~~~ 81 (198)
++| +|+..+-
T Consensus 19 fGf-iWGlmLL 28 (138)
T PF15027_consen 19 FGF-IWGLMLL 28 (138)
T ss_pred HHH-HHHHHHH
Confidence 555 7776544
No 24
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=26.50 E-value=3.1e+02 Score=28.63 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhcHHHHHHHHHH
Q psy17279 135 VDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEV 187 (198)
Q Consensus 135 ~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~q~~ID~~v~~ 187 (198)
...+-.+++.|+++++ +||++.|+++...+++.-=..++++...|-..+.+
T Consensus 159 ~i~l~~~v~Swifg~~--~fs~~slffii~~~~~vY~~~~~rv~rnird~v~~ 209 (1227)
T COG5038 159 AIVLIGSVASWIFGYL--GFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQ 209 (1227)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777766 58999999999888887777777777777554443
No 25
>KOG0054|consensus
Probab=25.31 E-value=8.7e+02 Score=26.07 Aligned_cols=83 Identities=6% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHhHHHHhhcHHHH---
Q psy17279 107 VKAATEAAISHADATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTL--VIIGFVALFTLPKVYENNKATI--- 181 (198)
Q Consensus 107 v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tL--l~i~~~~~FtvP~~Y~~~q~~I--- 181 (198)
+.++...=.+.+..+...++.+ |..-++.++++|+++..-.+-.+..+ +++.+.+-+-+-+.+.++|.+-
T Consensus 301 ivNlms~D~~ri~~~~~~~h~~-----w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~ 375 (1381)
T KOG0054|consen 301 IVNLMSVDAQRLSDAACFLHLL-----WSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKR 375 (1381)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444344555555666666 56668889999998864443333333 3333334444456777777765
Q ss_pred -HHHHHHHHHHHHh
Q psy17279 182 -DANLEVVQGKIAE 194 (198)
Q Consensus 182 -D~~v~~~~~~i~~ 194 (198)
|+.+++..+-++.
T Consensus 376 ~D~Rik~~nEiL~~ 389 (1381)
T KOG0054|consen 376 KDERIKLMNEILNG 389 (1381)
T ss_pred hhHHHHHHHHHHhh
Confidence 7777776665544
No 26
>KOG0860|consensus
Probab=24.97 E-value=79 Score=23.75 Aligned_cols=24 Identities=8% Similarity=0.447 Sum_probs=20.3
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhcC
Q psy17279 175 ENNKATIDANLEVVQGKIAEITSK 198 (198)
Q Consensus 175 ~~~q~~ID~~v~~~~~~i~~~~~~ 198 (198)
++-|.|||..++..++.++++.++
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER 55 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLER 55 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 566899999999999999888764
No 27
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=24.30 E-value=4.7e+02 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHh
Q psy17279 172 KVYENNKATIDANLEVVQGKIAE 194 (198)
Q Consensus 172 ~~Y~~~q~~ID~~v~~~~~~i~~ 194 (198)
.+.+..|.+++.-.+.-..++|+
T Consensus 113 lv~~~~~rKlN~n~D~rLa~vN~ 135 (308)
T PF14800_consen 113 LVFMRHQRKLNMNTDVRLAAVNE 135 (308)
T ss_pred HHHHHHHHHhcccHHHHHHHHHH
Confidence 45566666654444444444443
No 28
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=23.69 E-value=3.2e+02 Score=26.71 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHHHHHHhhHHcccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHhhcH
Q psy17279 119 DATLLELRRIFLVEDFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNK 178 (198)
Q Consensus 119 n~~l~~lr~l~~~~d~~~slk~~~~L~ils~lg~~~s~~tLl~i~~~~~FtvP~~Y~~~q 178 (198)
......++++..|||+..|+-++++.+.+-+-|= + .=++-.+++...+-.++.+|+
T Consensus 500 ~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~w-l---~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 500 IEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGW-L---GYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHhh
Confidence 3455789999999999999988766554433222 1 112233344444445556665
No 29
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=22.05 E-value=94 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHhHhc
Q psy17279 174 YENNKATIDANLEVVQGKIAEITS 197 (198)
Q Consensus 174 Y~~~q~~ID~~v~~~~~~i~~~~~ 197 (198)
.+++.++||.|++++.+.|+...+
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~ 27 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLD 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988866554
No 30
>KOG3716|consensus
Probab=21.31 E-value=6.7e+02 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=20.7
Q ss_pred chhHHHHHHHH-HHHHhhhhhHHHHHHHHHH
Q psy17279 35 ISGAVFGVSLA-VLISLAYYSLISVVANLAL 64 (198)
Q Consensus 35 ~S~~vf~~~~~-~L~~~~~~slis~~~~~~l 64 (198)
+|+.++++++| .++.+..+++..+++|=+.
T Consensus 98 ~s~~i~~~~~w~~vi~~~r~~l~~llsYkGw 128 (764)
T KOG3716|consen 98 KSLAIFATGLWLTVIFLRRLLLKLLLSYKGW 128 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcce
Confidence 56667766776 5666777888888876543
No 31
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.64 E-value=3.2e+02 Score=19.58 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcHHH
Q psy17279 156 GLTLVIIGFVALFTLPKVYENNKAT 180 (198)
Q Consensus 156 ~~tLl~i~~~~~FtvP~~Y~~~q~~ 180 (198)
+..+.++|++.+..+|.+....++.
T Consensus 16 LVvl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 16 LVVLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3456778888899999887766666
No 32
>PHA02677 hypothetical protein; Provisional
Probab=20.38 E-value=2.7e+02 Score=20.54 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcHHHHHHHHHHH
Q psy17279 156 GLTLVIIGFVALFTLPKVYENNKATIDANLEVV 188 (198)
Q Consensus 156 ~~tLl~i~~~~~FtvP~~Y~~~q~~ID~~v~~~ 188 (198)
++-|+|..++.=-.+|.+.||-+.|=|.+.+-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888899999999999999887654
No 33
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.08 E-value=94 Score=19.23 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=7.3
Q ss_pred cccCCcchhHHHHH
Q psy17279 29 YWRDPKISGAVFGV 42 (198)
Q Consensus 29 lWrd~~~S~~vf~~ 42 (198)
+||++-+....++.
T Consensus 7 lWKg~~Kpl~~~~~ 20 (44)
T PF09163_consen 7 LWKGVLKPLGAAGM 20 (44)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHhhhHHHHHHHHH
Confidence 56665555444443
Done!