Query psy17279
Match_columns 198
No_of_seqs 109 out of 473
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 99.5 2.8E-15 9.5E-20 103.7 -1.5 69 71-139 11-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 99.2 9.8E-14 3.4E-18 91.5 -6.5 60 74-133 1-60 (60)
3 2l5g_B Putative uncharacterize 19.6 73 0.0025 18.7 2.2 22 177-198 10-31 (42)
4 1xwj_B Talin, metavinculin; ce 16.2 96 0.0033 15.9 2.0 20 178-197 3-22 (26)
5 1zke_A Hypothetical protein HP 15.6 1.5E+02 0.0051 19.7 3.3 21 175-195 51-71 (83)
6 1oef_A Apolipoprotein E; glyco 13.5 42 0.0014 17.2 0.1 15 183-197 5-19 (26)
7 2aze_B Transcription factor E2 13.2 1.4E+02 0.0047 20.8 2.8 23 175-197 19-41 (106)
8 1rh5_B Preprotein translocase 11.0 3.6E+02 0.012 17.5 4.7 34 129-162 26-63 (74)
9 2wuj_A Septum site-determining 10.3 2.3E+02 0.0078 17.2 2.8 19 178-196 22-40 (57)
10 1zx4_A P1 PARB, plasmid partit 10.2 3.1E+02 0.01 21.1 4.2 26 170-195 72-100 (192)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=99.45 E-value=2.8e-15 Score=103.67 Aligned_cols=69 Identities=48% Similarity=0.922 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccCHHHHHH
Q psy17279 71 IGFRIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIK 139 (198)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~~P~~~yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk 139 (198)
..||+|+++++.+||++++|||++|+|.|+++|+|+++++++.+...+|.++.++|+++++||+.+|+|
T Consensus 11 ~sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 11 RGMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp --CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 357999999999999999999999999999999999999999999999999999999999999998875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=99.18 E-value=9.8e-14 Score=91.51 Aligned_cols=60 Identities=47% Similarity=0.923 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHcccC
Q psy17279 74 RIYKSILQAVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVED 133 (198)
Q Consensus 74 ~i~~~~~~~~~~~~~~~P~~~yl~~~~~lse~~v~~~~~~v~~~in~~l~~lr~l~~~~d 133 (198)
|+|+++++.++|++++|||++|+|.|+++|+|.++++++.+..++|.++.++|+++++||
T Consensus 1 RiYk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCCCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred ChHHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 356677788899999999999999999999999999999999999999999999999987
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=19.63 E-value=73 Score=18.66 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhcC
Q psy17279 177 NKATIDANLEVVQGKIAEITSK 198 (198)
Q Consensus 177 ~q~~ID~~v~~~~~~i~~~~~~ 198 (198)
.-+.||+=+++..+||+++.+|
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888887643
No 4
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=16.22 E-value=96 Score=15.94 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhHhc
Q psy17279 178 KATIDANLEVVQGKIAEITS 197 (198)
Q Consensus 178 q~~ID~~v~~~~~~i~~~~~ 197 (198)
|.+++.....+.+++.++++
T Consensus 3 q~el~~~~r~v~ekV~~vla 22 (26)
T 1xwj_B 3 KKELIESARKVSEKVSHVLA 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888764
No 5
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=15.60 E-value=1.5e+02 Score=19.69 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.6
Q ss_pred hhcHHHHHHHHHHHHHHHHhH
Q psy17279 175 ENNKATIDANLEVVQGKIAEI 195 (198)
Q Consensus 175 ~~~q~~ID~~v~~~~~~i~~~ 195 (198)
.++-.|||..+++.+++|+.+
T Consensus 51 ~~~~~QideeV~~LKe~IdaL 71 (83)
T 1zke_A 51 EAFFTQLSEEVERLKELINAL 71 (83)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999988764
No 6
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=13.52 E-value=42 Score=17.25 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHhc
Q psy17279 183 ANLEVVQGKIAEITS 197 (198)
Q Consensus 183 ~~v~~~~~~i~~~~~ 197 (198)
.+++.++.|++++.+
T Consensus 5 P~~e~ik~q~~~i~e 19 (26)
T 1oef_A 5 PLVEDMQRQWAGLVE 19 (26)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555443
No 7
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=13.23 E-value=1.4e+02 Score=20.82 Aligned_cols=23 Identities=4% Similarity=0.281 Sum_probs=19.5
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhc
Q psy17279 175 ENNKATIDANLEVVQGKIAEITS 197 (198)
Q Consensus 175 ~~~q~~ID~~v~~~~~~i~~~~~ 197 (198)
+..+..+|+++..++++++++++
T Consensus 19 ~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 19 QESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999998864
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=11.05 E-value=3.6e+02 Score=17.53 Aligned_cols=34 Identities=6% Similarity=-0.053 Sum_probs=17.7
Q ss_pred HcccCHHHHHHHH----HHHHHHHHHhhhhhHHHHHHH
Q psy17279 129 FLVEDFVDSIKFV----IILWTFTYVGSWFNGLTLVII 162 (198)
Q Consensus 129 ~~~~d~~~slk~~----~~L~ils~lg~~~s~~tLl~i 162 (198)
+.--|..++.+++ ++..++..+|-.+......+-
T Consensus 26 ~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn 63 (74)
T 1rh5_B 26 LKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 63 (74)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666654 444555566655444443333
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=10.30 E-value=2.3e+02 Score=17.22 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q psy17279 178 KATIDANLEVVQGKIAEIT 196 (198)
Q Consensus 178 q~~ID~~v~~~~~~i~~~~ 196 (198)
++++|.++..+.+.+.++.
T Consensus 22 ~~EVD~FLd~v~~~~~~l~ 40 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVL 40 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888777766665543
No 10
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=10.21 E-value=3.1e+02 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=14.7
Q ss_pred hHHHHhhc---HHHHHHHHHHHHHHHHhH
Q psy17279 170 LPKVYENN---KATIDANLEVVQGKIAEI 195 (198)
Q Consensus 170 vP~~Y~~~---q~~ID~~v~~~~~~i~~~ 195 (198)
++.+++.+ +..+|..++.+..+++++
T Consensus 72 L~k~~~~l~~~~~~l~eLi~~~~~~i~~~ 100 (192)
T 1zx4_A 72 LCAVGDEMGNKNLEFDQLIQNISPEINDI 100 (192)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 34555555 555566666666655554
Done!