Query psy17279
Match_columns 198
No_of_seqs 109 out of 473
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 17:55:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17279.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17279hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 44.1 19 0.0014 21.1 4.7 30 99-128 27-56 (69)
2 d2gaua1 a.4.5.4 (A:152-232) Tr 23.8 44 0.0032 19.8 3.8 30 99-128 27-56 (81)
3 d1kqfb2 f.23.22.1 (B:246-290) 20.6 27 0.002 19.4 1.9 13 29-41 7-19 (45)
4 d1zyba1 a.4.5.4 (A:148-220) Pr 18.3 44 0.0032 19.8 2.9 30 99-128 25-54 (73)
5 d1ft9a1 a.4.5.4 (A:134-213) CO 17.5 76 0.0056 18.7 4.0 30 99-128 28-57 (80)
6 d1nvpb_ a.32.1.1 (B:) Large ch 17.4 72 0.0052 17.4 3.3 22 169-193 1-22 (43)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 15.2 68 0.005 16.6 2.6 20 158-177 15-34 (37)
8 d3e5ua1 a.4.5.4 (A:148-227) Ch 13.0 53 0.0039 19.4 2.2 30 99-128 28-57 (80)
9 d1v54l_ f.23.6.1 (L:) Mitochon 12.8 1E+02 0.0075 16.8 3.1 20 159-178 23-42 (46)
10 d1h2vc1 a.118.1.14 (C:29-290) 12.0 2.6E+02 0.019 20.3 8.5 32 162-193 141-176 (262)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.09 E-value=19 Score=21.13 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=26.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17279 99 DISLPADKVKAATEAAISHADATLLELRRI 128 (198)
Q Consensus 99 ~~~lse~~v~~~~~~v~~~in~~l~~lr~l 128 (198)
.+.++++.+.+++..-.+.+|..+..+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 577999999999999999999999988764
No 2
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=23.80 E-value=44 Score=19.82 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17279 99 DISLPADKVKAATEAAISHADATLLELRRI 128 (198)
Q Consensus 99 ~~~lse~~v~~~~~~v~~~in~~l~~lr~l 128 (198)
.+.+|++.+.+++..-.+.+|..+.++++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999888764
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=20.64 E-value=27 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=6.5
Q ss_pred cccCCcchhHHHH
Q psy17279 29 YWRDPKISGAVFG 41 (198)
Q Consensus 29 lWrd~~~S~~vf~ 41 (198)
+||+..+-...++
T Consensus 7 lWKgv~Kpl~~~~ 19 (45)
T d1kqfb2 7 LWKGALKPLAAAG 19 (45)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HhhhhHHHHHHHH
Confidence 5665555444443
No 4
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=18.30 E-value=44 Score=19.83 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=26.1
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17279 99 DISLPADKVKAATEAAISHADATLLELRRI 128 (198)
Q Consensus 99 ~~~lse~~v~~~~~~v~~~in~~l~~lr~l 128 (198)
.+.++++.+.++...-.+.+|..+.++++-
T Consensus 25 ~i~lt~~elA~~lg~sr~tvsr~l~~l~~~ 54 (73)
T d1zyba1 25 TFKVKMDDLARCLDDTRLNISKTLNELQDN 54 (73)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred EeecCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999888763
No 5
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=17.50 E-value=76 Score=18.69 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=25.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17279 99 DISLPADKVKAATEAAISHADATLLELRRI 128 (198)
Q Consensus 99 ~~~lse~~v~~~~~~v~~~in~~l~~lr~l 128 (198)
.+.++++.+.+++..-.+.+|..+..+++-
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~ 57 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKE 57 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457889999999999999999999887764
No 6
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.40 E-value=72 Score=17.36 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=14.6
Q ss_pred HhHHHHhhcHHHHHHHHHHHHHHHH
Q psy17279 169 TLPKVYENNKATIDANLEVVQGKIA 193 (198)
Q Consensus 169 tvP~~Y~~~q~~ID~~v~~~~~~i~ 193 (198)
|+|.+| +..|+..++.+++...
T Consensus 1 tV~kvY---~~VIedVI~~vR~~F~ 22 (43)
T d1nvpb_ 1 TVPKLY---RSVIEDVINDVRDIFL 22 (43)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHH
Confidence 456665 5678887777776543
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.20 E-value=68 Score=16.65 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHhhc
Q psy17279 158 TLVIIGFVALFTLPKVYENN 177 (198)
Q Consensus 158 tLl~i~~~~~FtvP~~Y~~~ 177 (198)
|=+|.|.+..|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555544
No 8
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=12.96 E-value=53 Score=19.44 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17279 99 DISLPADKVKAATEAAISHADATLLELRRI 128 (198)
Q Consensus 99 ~~~lse~~v~~~~~~v~~~in~~l~~lr~l 128 (198)
.+.++++.+.+++..-.+.+|..+..+++-
T Consensus 28 ~~~lt~~elA~~~g~sretvsr~l~~l~~~ 57 (80)
T d3e5ua1 28 TMPLSQKSIGEITGVHHVTVSRVLASLKRE 57 (80)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eeCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999988875
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.75 E-value=1e+02 Score=16.84 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHhhcH
Q psy17279 159 LVIIGFVALFTLPKVYENNK 178 (198)
Q Consensus 159 Ll~i~~~~~FtvP~~Y~~~q 178 (198)
++.+.+-..|..|.+-.+||
T Consensus 23 ~m~~~fGsgfa~PF~ivRhq 42 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIVRHQ 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHH
Confidence 33444556778888877776
No 10
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.03 E-value=2.6e+02 Score=20.30 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=22.7
Q ss_pred HHHHHHHHhHH----HHhhcHHHHHHHHHHHHHHHH
Q psy17279 162 IGFVALFTLPK----VYENNKATIDANLEVVQGKIA 193 (198)
Q Consensus 162 i~~~~~FtvP~----~Y~~~q~~ID~~v~~~~~~i~ 193 (198)
++.+.+-++|. +|++++++.|+.++.+..-++
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34456677774 577888888888888776554
Done!