RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17279
(198 letters)
>gnl|CDD|217046 pfam02453, Reticulon, Reticulon. Reticulon, also know as
neuroendocrine-specific protein (NSP), is a protein of
unknown function which associates with the endoplasmic
reticulum. This family represents the C-terminal domain
of the three reticulon isoforms and their homologues.
Length = 164
Score = 152 bits (386), Expect = 2e-47
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 11/173 (6%)
Query: 24 VESLVYWRDPKISGAVFGVSLA--VLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQ 81
V L+ WRDPK SG VFG L +L SL+ YSL+SV++ L LL+L +R+ K +L
Sbjct: 1 VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60
Query: 82 AVQKTNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFVDSIKFV 141
AV E L+ D++L + V+ ++ + L ELRR+FL ED VDS+K
Sbjct: 61 AVP---------EPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAA 111
Query: 142 IILWTFTYVGSWFNGLTLVIIGFVALFTLPKVYENNKATIDANLEVVQGKIAE 194
+ LW +Y+GS F+GLTL+ IG + FT+P +YE + IDA +E + K+ +
Sbjct: 112 VGLWLLSYLGSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164
>gnl|CDD|235615 PRK05812, secD, preprotein translocase subunit SecD; Reviewed.
Length = 462
Score = 28.7 bits (65), Expect = 2.0
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 35 ISGAVFGVSLAVLISLAYYSLISVVANLALLV 66
I+G + G++L +L + YY L ++AN+AL+
Sbjct: 301 IAGLI-GLALVLLFMILYYRLFGLIANIALVA 331
>gnl|CDD|218288 pfam04842, DUF639, Plant protein of unknown function (DUF639).
Plant protein of unknown function.
Length = 682
Score = 28.3 bits (63), Expect = 3.2
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 29/168 (17%)
Query: 24 VESLVYWRDPKISGAVFGVSLAVLISLAYYSLISVVANLALLVLVGAIGFRIYKSILQAV 83
+E L YW DP S V LA+ ++ + + V ++L+ + AIG +L
Sbjct: 506 IEKLRYWEDPYKSV----VFLALASTIIFRGWLGYVLPVSLIFV--AIG------MLTRR 553
Query: 84 QKTNEGHPFKEYLELDISLPADK--------VKAAT---EAAISHADATLLELRRIFLVE 132
Q K + + + P V+ A E+ I + LL+LR I L
Sbjct: 554 QFRLG----KLFGIVSVRAPPSSNTIEQILAVQDAISNLESLIQKVNVVLLKLRAIVLSG 609
Query: 133 DFVDSIKFVIILWTFTYVGSWFNGLTLVIIGFVALFT--LPKVYENNK 178
+ + I + V + L+ FV FT +
Sbjct: 610 HPQATTEVAIAMLVIATVLAVVPFKYLLAFVFVEQFTRESEFRKASVD 657
>gnl|CDD|131098 TIGR02043, ZntR, Zn(II)-responsive transcriptional regulator. This
model represents the zinc and cadmium (II) responsive
transcriptional activator of the gamma proteobacterial
zinc efflux system. This protein is a member of the MerR
family of transcriptional activators (pfam00376) and
contains a distinctive pattern of cysteine residues in
its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a
conserved and critical cysteine at the N-terminal end of
the dimerization helix [Regulatory functions, DNA
interactions].
Length = 131
Score = 27.1 bits (60), Expect = 3.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 178 KATIDANLEVVQGKIAEIT 196
KA +DA LE+V KI E+T
Sbjct: 83 KAIVDAKLELVDEKINELT 101
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 27.5 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 170 LPKVYENNKATIDANLEVVQGKIAEI 195
L K ++A I A L VQGK +I
Sbjct: 683 LAKALTEHEAAIVAELNAVQGKPVDI 708
>gnl|CDD|234681 PRK00182, tatB, sec-independent translocase; Provisional.
Length = 160
Score = 27.1 bits (60), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 147 FTYVGSWFNGLTLVIIGFVALFT--LPKVYENNKATIDA 183
F+ VG W L L+I+G + + LP++ E+ +A + A
Sbjct: 2 FSSVG-WGEILLLLIVGLIVIGPERLPRLIEDVRAALLA 39
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 27.8 bits (62), Expect = 5.1
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 148 TYVGSWFNGLTLVIIGFVALFT------LPK------VYENNKATIDANLEVVQGKIAEI 195
++G+W+ G +I G VAL T PK N LE + + +
Sbjct: 254 RWIGAWWIGF--LICGGVALLTSIPLFFFPKALPKEGKRVNVDVHETEKLEKSEDESRKK 311
Query: 196 TS 197
S
Sbjct: 312 NS 313
>gnl|CDD|225394 COG2838, Icd, Monomeric isocitrate dehydrogenase [Energy production
and conversion].
Length = 744
Score = 27.4 bits (61), Expect = 5.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 170 LPKVYENNKATIDANLEVVQGKIAEI 195
L K N+A I A L VQGK +I
Sbjct: 689 LAKALTENEAKIVAELNAVQGKPVDI 714
>gnl|CDD|215406 PLN02761, PLN02761, lipase class 3 family protein.
Length = 527
Score = 27.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 86 TNEGHPFKEYLELDISLPADKVKAATEAAISHADATLLE 124
TNE F++Y+E S P E A+ H + L+
Sbjct: 376 TNEKFQFQKYVEEKTSFPWSYAHVGVELALDHKKSPFLK 414
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 27.2 bits (60), Expect = 7.5
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 88 EGHPFKEYLELDISLPADKVKAATEAAISHADATLLELRRIFLVEDFV-------DSIKF 140
E +Y DISL ++ + IS+ +A L+RIF F+ D+I F
Sbjct: 310 ENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISF 369
Query: 141 VIILWT 146
+ W+
Sbjct: 370 AVHFWS 375
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 27.2 bits (60), Expect = 7.7
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 13 GERLDHYATEAVESLVYWRDPKISGAVFGVSLAVLISLA---YYSLISVVANLALLVLVG 69
G+R+ Y + V SL+ + KIS +F +L + +SL Y S + ++A A+ + G
Sbjct: 111 GQRIRIYMS--VLSLILYIFTKISTDIFSGALFIQVSLGWNLYLSTVILLAVTAVYTIAG 168
Query: 70 AIGFRIYKSILQAV 83
+ IY LQ V
Sbjct: 169 GLTAVIYTDALQTV 182
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 26.2 bits (58), Expect = 9.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 53 YSLISVVANLALLVLVGAIGFRIYKSILQAVQ 84
++L+ V+ LA+ L+ + FR S ++ Q
Sbjct: 9 FTLLEVLVALAIFALLLLLAFRFLDSAQRSNQ 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.400
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,280,799
Number of extensions: 989151
Number of successful extensions: 1731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1719
Number of HSP's successfully gapped: 134
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)