RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17279
         (198 letters)



>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTL 170
           IK    + T            L  +GF+ LFT+
Sbjct: 348 IKIFSWIATMWGGSIELKTPMLWALGFLFLFTV 380


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 25.5 bits (56), Expect = 4.9
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 138 IKFVIILWTFTYVGSWFNGLTLVIIGFVALFTL 170
           +K    L T       ++   +  +GF+ LFT+
Sbjct: 318 VKVFSWLATLHGGNIKWSPAMMWALGFIFLFTV 350


>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 231

 Score = 24.9 bits (53), Expect = 7.0
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 6/34 (17%)

Query: 102 LPADKVKAATEAAISHADATLLELRRIFLVEDFV 135
            P ++     +   S  DA +++L      ED V
Sbjct: 11  APGNRADLIAKLPRSAPDAVVIDL------EDAV 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 711,303
Number of extensions: 30362
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 8
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)