BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17282
         (60 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O70622|RTN2_MOUSE Reticulon-2 OS=Mus musculus GN=Rtn2 PE=1 SV=1
          Length = 471

 Score = 40.4 bits (93), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 29/42 (69%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIP 50
           G VALFT+P +Y  ++A ID  + +V  +++ I +K++A IP
Sbjct: 411 GVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKIP 452


>sp|Q6IFY7|RTN1A_XENLA Reticulon-1-A OS=Xenopus laevis GN=rtn1-a PE=2 SV=1
          Length = 207

 Score = 38.5 bits (88), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 11  VALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
           V++F+LP VY+  +A ID  L +V+  +  I +K++A IP  K++E
Sbjct: 162 VSMFSLPVVYDKYQAQIDQYLGLVRTNMNTIMTKIQAKIPGTKQKE 207


>sp|A7MC64|RTN1_XENTR Reticulon-1 OS=Xenopus tropicalis GN=rtn1 PE=2 SV=2
          Length = 764

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 11  VALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
           V++F+LP VY+  +A ID  L +V+  +  I +K++A IP  K++E
Sbjct: 719 VSMFSLPVVYDKYQAQIDQYLGLVRTNMNTIVTKIQAKIPGTKQKE 764


>sp|Q5MY90|RTN1B_XENLA Reticulon-1-B OS=Xenopus laevis GN=rtn1-b PE=2 SV=1
          Length = 752

 Score = 36.6 bits (83), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 11  VALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
           V++F+LP VY+  +A ID  L +V+  +  I +K++A IP  K++E
Sbjct: 707 VSMFSLPVVYDKYQAQIDQYLGLVRTNMNIIVTKIQAKIPGTKQKE 752


>sp|Q5J6M8|RTN3A_XENLA Reticulon-3-A OS=Xenopus laevis GN=rtn3-a PE=2 SV=2
          Length = 214

 Score = 35.8 bits (81), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKE 59
           G +  FT P VYE  K  ID  + +V  ++  IT K++A +P G  ++K E
Sbjct: 165 GVLLTFTAPIVYEKYKVQIDHYVSLVHSQVKSITEKIQAKLP-GALKKKSE 214


>sp|Q68EW1|RTN3B_XENLA Reticulon-3-B OS=Xenopus laevis GN=rtn3-b PE=2 SV=1
          Length = 214

 Score = 35.8 bits (81), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKE 59
           G +  FT P VYE  K  ID  + +V  ++  IT K++A +P G  ++K E
Sbjct: 165 GVLLAFTTPLVYEKYKVQIDHYVSLVHSQVKSITEKIQAKLP-GALKKKSE 214


>sp|Q28D16|RTN3_XENTR Reticulon-3 OS=Xenopus tropicalis GN=rtn3 PE=2 SV=1
          Length = 213

 Score = 35.0 bits (79), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEEKKE 59
           G +  FT P VYE  K  ID  + +V   +  IT K++A +P G  ++K E
Sbjct: 164 GVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKSITEKIQAKLP-GALKKKSE 213


>sp|Q99P72|RTN4_MOUSE Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
          Length = 1162

 Score = 34.3 bits (77), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 9    GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIP 50
              ++LF++P +YE ++A ID  L +    + +  +K++A IP
Sbjct: 1114 ALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKIP 1155


>sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2
          Length = 1192

 Score = 33.9 bits (76), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 9    GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIP 50
              ++LF++P +YE ++A ID  L +    + +  +K++A IP
Sbjct: 1144 ALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIP 1185


>sp|Q9JK11|RTN4_RAT Reticulon-4 OS=Rattus norvegicus GN=Rtn4 PE=1 SV=1
          Length = 1163

 Score = 32.3 bits (72), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 9    GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIP 50
              ++LF++P +YE ++  ID  L +    + +  +K++A IP
Sbjct: 1115 ALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMAKIQAKIP 1156


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.129    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,558,909
Number of Sequences: 539616
Number of extensions: 548664
Number of successful extensions: 1381
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1371
Number of HSP's gapped (non-prelim): 10
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)