Query psy17282
Match_columns 60
No_of_seqs 110 out of 289
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792|consensus 99.7 6.8E-17 1.5E-21 108.7 6.2 55 2-56 171-229 (230)
2 PF02453 Reticulon: Reticulon; 99.2 2E-12 4.4E-17 80.3 0.0 39 2-40 131-169 (169)
3 COG4537 ComGC Competence prote 83.0 4.2 9.1E-05 24.9 4.5 32 1-32 19-50 (107)
4 PRK00753 psbL photosystem II r 79.6 3.1 6.6E-05 21.2 2.6 20 4-23 17-36 (39)
5 PF05814 DUF843: Baculovirus p 79.4 5.4 0.00012 23.5 4.1 47 2-48 27-79 (83)
6 CHL00038 psbL photosystem II p 76.9 4.4 9.5E-05 20.6 2.7 20 4-23 16-35 (38)
7 TIGR02596 Verrucomicrobium spi 74.7 18 0.0004 24.0 6.0 44 1-44 6-50 (195)
8 TIGR01710 typeII_sec_gspG gene 74.2 17 0.00037 22.1 6.1 24 1-24 8-31 (134)
9 PF11157 DUF2937: Protein of u 72.7 22 0.00048 22.8 6.4 43 4-46 9-51 (167)
10 TIGR01708 typeII_sec_gspH gene 72.3 19 0.0004 21.7 6.1 39 1-39 11-50 (143)
11 PF02419 PsbL: PsbL protein; 72.0 5.7 0.00012 20.1 2.4 20 4-23 15-34 (37)
12 PHA02677 hypothetical protein; 70.5 16 0.00035 22.4 4.7 34 1-34 4-37 (108)
13 PF01484 Col_cuticle_N: Nemato 70.0 13 0.00027 18.8 5.8 35 8-42 13-50 (53)
14 COG2165 PulG Type II secretory 69.8 19 0.00041 20.7 6.0 25 2-26 16-40 (149)
15 PF08700 Vps51: Vps51/Vps67; 68.5 18 0.00038 19.9 4.6 27 18-44 45-73 (87)
16 PRK10506 hypothetical protein; 67.6 28 0.0006 21.8 6.3 44 1-44 16-60 (162)
17 PF01737 Ycf9: YCF9; InterPro 66.8 9.1 0.0002 21.1 2.8 19 3-21 7-25 (59)
18 PF12548 DUF3740: Sulfatase pr 65.5 18 0.0004 23.0 4.4 33 12-44 96-128 (145)
19 PF07954 DUF1689: Protein of u 63.9 7.1 0.00015 25.1 2.3 22 5-26 36-57 (152)
20 PF10818 DUF2547: Protein of u 61.3 7.1 0.00015 23.4 1.8 21 2-22 4-24 (94)
21 PF03620 IBV_3C: IBV 3C protei 60.9 27 0.00059 20.8 4.2 30 1-30 14-45 (93)
22 PF07234 DUF1426: Protein of u 58.7 21 0.00045 22.0 3.6 24 3-30 25-48 (117)
23 PRK10574 putative major pilin 58.7 43 0.00094 21.1 5.8 18 2-19 13-30 (146)
24 KOG1726|consensus 57.8 24 0.00053 24.1 4.1 20 22-41 95-114 (225)
25 KOG0361|consensus 57.8 8.4 0.00018 29.0 2.0 33 21-53 261-297 (543)
26 TIGR03043 PS_II_psbZ photosyst 52.4 6.2 0.00014 21.7 0.5 19 3-21 7-25 (58)
27 PF11337 DUF3139: Protein of u 50.8 44 0.00096 18.8 4.4 17 17-33 30-46 (85)
28 PF10562 CaM_bdg_C0: Calmoduli 50.1 26 0.00056 16.8 2.4 28 18-45 1-28 (29)
29 PF08112 ATP-synt_E_2: ATP syn 49.0 44 0.00095 18.2 3.5 23 25-47 7-29 (56)
30 PRK13454 F0F1 ATP synthase sub 48.3 71 0.0015 20.4 5.8 28 2-29 35-62 (181)
31 PF11803 UXS1_N: UDP-glucurona 48.2 48 0.001 19.2 3.8 27 24-50 52-78 (78)
32 COG3887 Predicted signaling pr 46.3 1.5E+02 0.0032 23.5 7.2 36 18-53 53-88 (655)
33 PF10855 DUF2648: Protein of u 45.8 14 0.00031 18.1 1.2 13 18-30 16-28 (33)
34 PF10960 DUF2762: Protein of u 44.4 58 0.0013 18.3 4.1 12 22-33 43-54 (71)
35 PF13677 MotB_plug: Membrane M 44.2 50 0.0011 17.5 3.4 18 2-19 24-41 (58)
36 COG2976 Uncharacterized protei 44.0 1E+02 0.0022 20.9 6.0 45 6-50 25-69 (207)
37 CHL00082 psbZ photosystem II p 43.5 8.1 0.00017 21.5 0.1 20 3-22 10-29 (62)
38 PRK02576 psbZ photosystem II r 43.3 8 0.00017 21.6 0.0 23 3-25 10-32 (62)
39 COG4970 FimT Tfp pilus assembl 43.3 25 0.00054 23.2 2.3 25 1-25 15-39 (181)
40 PRK06667 motB flagellar motor 41.2 22 0.00048 23.9 1.9 29 2-30 25-54 (252)
41 PRK06742 flagellar motor prote 40.5 24 0.00051 23.5 2.0 28 2-29 19-47 (225)
42 PF04961 FTCD_C: Formiminotran 39.3 60 0.0013 21.0 3.7 50 9-58 35-97 (184)
43 PRK08457 motB flagellar motor 39.2 25 0.00055 23.8 2.0 18 2-19 23-40 (257)
44 PF03037 KMP11: Kinetoplastid 38.7 82 0.0018 18.4 4.4 26 19-44 47-72 (90)
45 PF13198 DUF4014: Protein of u 37.3 83 0.0018 18.0 4.0 20 15-34 43-62 (72)
46 PRK00888 ftsB cell division pr 36.9 92 0.002 18.4 6.7 29 2-30 3-39 (105)
47 KOG0860|consensus 36.7 62 0.0013 20.1 3.2 24 21-44 32-55 (116)
48 PF15463 ECM11: Extracellular 36.0 1.1E+02 0.0023 18.9 4.6 29 18-46 101-129 (139)
49 PF07599 DUF1563: Protein of u 35.2 41 0.0009 17.2 1.9 23 4-26 2-24 (43)
50 PF14013 MT0933_antitox: MT093 32.8 46 0.00099 17.5 1.9 13 21-33 10-22 (51)
51 TIGR02209 ftsL_broad cell divi 32.5 89 0.0019 17.0 6.5 24 3-26 4-27 (85)
52 PF11119 DUF2633: Protein of u 32.4 89 0.0019 17.2 3.1 22 5-26 13-39 (59)
53 PRK01100 putative accessory ge 32.0 16 0.00034 24.1 0.0 9 20-28 202-210 (210)
54 PRK06778 hypothetical protein; 31.9 38 0.00083 23.5 1.9 18 2-19 29-46 (289)
55 PF11711 Tim54: Inner membrane 31.8 9.9 0.00021 27.7 -1.0 21 5-25 22-42 (382)
56 PRK07734 motB flagellar motor 31.7 39 0.00085 22.7 2.0 18 2-19 26-43 (259)
57 PRK09038 flagellar motor prote 31.6 39 0.00085 23.2 2.0 18 2-19 24-41 (281)
58 PRK08944 motB flagellar motor 31.4 39 0.00085 23.6 2.0 18 2-19 24-41 (302)
59 PRK14756 hypothetical protein; 31.2 69 0.0015 15.3 2.3 18 2-19 10-27 (29)
60 PF07399 DUF1504: Protein of u 31.0 44 0.00096 25.0 2.2 24 6-29 286-311 (438)
61 cd08768 Cdc6_C Winged-helix do 30.8 95 0.0021 16.7 3.5 17 14-30 23-39 (87)
62 PRK06925 flagellar motor prote 30.6 42 0.0009 22.2 1.9 18 2-19 22-39 (230)
63 KOG0629|consensus 30.2 54 0.0012 25.0 2.6 25 20-44 389-413 (510)
64 PF14331 ImcF-related_N: ImcF- 30.1 18 0.00039 24.5 0.1 42 9-50 28-71 (266)
65 PF15508 NAAA-beta: beta subun 29.8 1.1E+02 0.0025 17.4 4.4 32 20-51 15-46 (95)
66 PHA00731 hypothetical protein 29.1 1.3E+02 0.0029 18.0 5.4 27 13-39 59-85 (96)
67 COG3404 Methenyl tetrahydrofol 28.8 1.9E+02 0.0042 19.7 6.2 28 7-34 38-66 (208)
68 PF11755 DUF3311: Protein of u 28.4 38 0.00083 18.5 1.2 25 5-29 3-27 (66)
69 PRK09041 motB flagellar motor 28.4 47 0.001 23.4 2.0 18 2-19 33-50 (317)
70 KOG1792|consensus 27.9 2E+02 0.0043 19.5 6.8 41 4-44 76-139 (230)
71 PF10445 DUF2456: Protein of u 27.7 59 0.0013 19.4 2.0 17 3-19 73-89 (94)
72 KOG4603|consensus 27.6 1.4E+02 0.003 20.1 3.9 35 18-53 156-190 (201)
73 PF14045 YIEGIA: YIEGIA protei 26.9 2.4E+02 0.0051 20.1 5.2 40 4-44 37-77 (285)
74 PHA03255 BDLF3; Provisional 26.7 70 0.0015 21.6 2.4 16 2-17 184-199 (234)
75 PRK09174 F0F1 ATP synthase sub 26.5 1.9E+02 0.0042 19.0 5.9 28 2-29 57-84 (204)
76 KOG3614|consensus 26.1 41 0.00088 28.6 1.4 17 2-18 797-813 (1381)
77 PF10332 DUF2418: Protein of u 26.0 1.5E+02 0.0033 17.5 5.2 42 4-45 42-83 (99)
78 PF10664 NdhM: Cyanobacterial 26.0 1.1E+02 0.0023 18.8 2.9 18 15-32 43-60 (108)
79 COG4736 CcoQ Cbb3-type cytochr 25.7 42 0.00091 18.5 1.1 8 3-10 18-25 (60)
80 PF10883 DUF2681: Protein of u 25.0 1.5E+02 0.0033 17.3 3.4 22 3-24 2-24 (87)
81 PRK10324 translation inhibitor 25.0 1.6E+02 0.0035 17.5 3.9 28 24-51 71-98 (113)
82 PF10963 DUF2765: Protein of u 25.0 1.4E+02 0.003 17.3 3.2 36 17-52 16-61 (83)
83 TIGR01947 rnfG electron transp 24.9 2E+02 0.0042 18.5 5.2 31 3-33 2-32 (186)
84 PF08484 Methyltransf_14: C-me 24.9 1.9E+02 0.0041 18.2 4.4 27 17-43 40-66 (160)
85 PLN02614 long-chain acyl-CoA s 24.7 74 0.0016 23.8 2.5 18 17-34 641-658 (666)
86 PF06678 DUF1179: Protein of u 24.7 1E+02 0.0022 18.8 2.6 20 2-21 4-27 (103)
87 PF05398 PufQ: PufQ cytochrome 24.6 72 0.0016 18.3 1.9 14 6-19 23-36 (73)
88 PRK10894 lipopolysaccharide tr 24.6 73 0.0016 20.2 2.2 18 2-19 5-22 (180)
89 PRK11677 hypothetical protein; 24.5 1.9E+02 0.0041 18.1 7.0 10 21-30 46-55 (134)
90 PRK14471 F0F1 ATP synthase sub 24.3 1.8E+02 0.004 17.9 5.8 28 2-29 12-39 (164)
91 PF03268 DUF267: Caenorhabditi 24.3 59 0.0013 23.7 1.9 16 17-32 309-324 (353)
92 KOG4769|consensus 24.1 83 0.0018 20.9 2.4 19 3-21 122-140 (182)
93 PF15339 Afaf: Acrosome format 24.0 98 0.0021 20.8 2.7 21 2-22 138-158 (200)
94 COG3937 Uncharacterized conser 24.0 1.8E+02 0.004 17.8 4.8 36 9-44 12-54 (108)
95 KOG2447|consensus 23.8 50 0.0011 23.5 1.4 17 1-17 258-274 (287)
96 PF06881 Elongin_A: RNA polyme 23.6 1.6E+02 0.0036 17.1 4.5 29 18-46 67-95 (109)
97 PF01311 Bac_export_1: Bacteri 23.0 2.1E+02 0.0045 19.1 4.2 29 6-34 220-248 (249)
98 COG4858 Uncharacterized membra 22.6 95 0.0021 21.2 2.5 20 2-21 127-146 (226)
99 PF14747 DUF4473: Domain of un 22.5 1.6E+02 0.0034 16.5 3.4 28 19-46 52-79 (82)
100 PRK14472 F0F1 ATP synthase sub 22.2 2.1E+02 0.0046 17.9 5.9 28 2-29 22-49 (175)
101 PF06596 PsbX: Photosystem II 22.0 72 0.0015 16.2 1.4 28 2-29 9-38 (39)
102 PF05103 DivIVA: DivIVA protei 21.8 1.8E+02 0.0039 16.9 4.1 21 24-44 20-40 (131)
103 KOG3457|consensus 21.5 1.2E+02 0.0026 18.0 2.5 20 1-20 64-84 (88)
104 PF14926 DUF4498: Domain of un 21.3 93 0.002 21.5 2.3 23 21-43 169-191 (247)
105 PHA02047 phage lambda Rz1-like 21.2 2.1E+02 0.0045 17.4 4.5 17 1-17 1-17 (101)
106 PHA02604 rI.-1 hypothetical pr 21.1 2.3E+02 0.005 17.9 4.3 18 16-33 45-62 (126)
107 PF05755 REF: Rubber elongatio 20.8 1.2E+02 0.0027 20.7 2.7 36 17-52 57-92 (216)
108 PRK13460 F0F1 ATP synthase sub 20.8 2.3E+02 0.005 17.7 5.9 10 21-30 46-55 (173)
109 PF10880 DUF2673: Protein of u 20.7 1.1E+02 0.0023 17.0 2.0 21 4-24 3-23 (65)
110 PF14030 DUF4245: Protein of u 20.7 71 0.0015 20.4 1.5 15 1-15 9-23 (169)
111 PF11527 ARL2_Bind_BART: The A 20.2 1.1E+02 0.0023 18.2 2.2 16 18-33 48-63 (121)
112 PF11845 DUF3365: Protein of u 20.1 2.3E+02 0.005 17.4 6.3 11 19-29 17-27 (188)
113 PRK11020 hypothetical protein; 20.1 2.4E+02 0.0051 17.6 5.0 44 17-60 30-79 (118)
114 PF07431 DUF1512: Protein of u 20.1 3.6E+02 0.0079 19.8 6.8 45 4-50 9-54 (355)
115 PF06295 DUF1043: Protein of u 20.0 2.2E+02 0.0048 17.3 6.3 15 6-20 6-20 (128)
No 1
>KOG1792|consensus
Probab=99.68 E-value=6.8e-17 Score=108.68 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCCCcch
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKA----AIPIGKKEE 56 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~v~~----Kip~~~~k~ 56 (60)
|+||+|+|++++||+|++||+|||+||.+++.+.++.+++++++.+ |+|+++.++
T Consensus 171 ~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 171 FLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred HHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 7999999999999999999999999999999887777776666665 599887664
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=99.21 E-value=2e-12 Score=80.30 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAE 40 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~ 40 (60)
++||+|++++++||+|.+||+||++||++++++++++++
T Consensus 131 ~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~~~~~~~~~k 169 (169)
T PF02453_consen 131 FLTLLYLGVLGAFTVPKLYEKYQEEIDQYVAKVKEKVKK 169 (169)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999988764
No 3
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=82.96 E-value=4.2 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENNKATIDANLE 32 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYekyq~~ID~~~~ 32 (60)
|++-|++|+++++.++|-+=.+.+.-=|.-.+
T Consensus 19 MLiVLlIISiLlLl~iPNltKq~~~i~~kGc~ 50 (107)
T COG4537 19 MLIVLLIISILLLLFIPNLTKQKEVIQDKGCE 50 (107)
T ss_pred HHHHHHHHHHHHHHHccchhhhHHHHhcchHH
Confidence 67889999999999999998877766666433
No 4
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=79.55 E-value=3.1 Score=21.24 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhHHHHHhh
Q psy17282 4 VSISPGFVALFTLPKVYENN 23 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYeky 23 (60)
|-+|.|.++.|.+-+++..|
T Consensus 17 TSLy~GlLlifvl~vLFssY 36 (39)
T PRK00753 17 TSLYLGLLLVFVLGILFSSY 36 (39)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 67899999999999988776
No 5
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=79.44 E-value=5.4 Score=23.45 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHHH-HHHH-----HHHHHHHHHHHHhh
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDAN-LEVV-----QGKIAEITSKVKAA 48 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~~-~~~~-----~~~~~~~~~~v~~K 48 (60)
++|++.+.++...-+++.|-+-|...+.. -+.+ ++++++..+.+++|
T Consensus 27 i~~~LilfviF~~~L~~yy~kteS~~~dL~t~k~K~~KKK~~ln~afDAiLNK 79 (83)
T PF05814_consen 27 IITLLILFVIFFCVLQVYYIKTESTPQDLQTEKAKSIKKKRDLNDAFDAILNK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 46677777777777888898877777663 3322 34455555555554
No 6
>CHL00038 psbL photosystem II protein L
Probab=76.90 E-value=4.4 Score=20.57 Aligned_cols=20 Identities=25% Similarity=0.487 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhHHHHHhh
Q psy17282 4 VSISPGFVALFTLPKVYENN 23 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYeky 23 (60)
|-+|.|.++.|.+-+++..|
T Consensus 16 TSLy~GLLlifvl~vlfssy 35 (38)
T CHL00038 16 TSLYWGLLLIFVLAVLFSNY 35 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 67899999999998888776
No 7
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=74.65 E-value=18 Score=24.02 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENN-KATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYeky-q~~ID~~~~~~~~~~~~~~~~ 44 (60)
|.++|+++|+++++++|.+=... +.+.+.....+...+....+.
T Consensus 6 LLVVLaIiaILaaia~P~l~~~~~~~~L~~~a~~L~s~L~~AR~~ 50 (195)
T TIGR02596 6 LLVVIAIIAVLMALSTPVVNQVLAAQQLGSSATRLANELAAAALL 50 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999876643 445666666666666555544
No 8
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=74.21 E-value=17 Score=22.10 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHHHhhHHHHHhhH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENNK 24 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYekyq 24 (60)
|.+.|+++|+++++.+|.+-...+
T Consensus 8 llivlaIigil~~i~~p~~~~~~~ 31 (134)
T TIGR01710 8 IMVVLVILGLLAALVAPKLFSQAD 31 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999998866443
No 9
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=72.74 E-value=22 Score=22.81 Aligned_cols=43 Identities=9% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 4 VSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVK 46 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~v~ 46 (60)
.+..+|.+++-.+|-+=+.|+..++.+...++..+..+.....
T Consensus 9 ~~~~~g~l~~~Q~P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~ 51 (167)
T PF11157_consen 9 AVFAAGALIGSQIPEFAQQYQQRLGGHLDELRRQVAGFQATAA 51 (167)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688999999999999999999999999888888776644
No 10
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=72.33 E-value=19 Score=21.71 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHhhHHHHH-hhHHHHHHHHHHHHHHHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYE-NNKATIDANLEVVQGKIA 39 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYe-kyq~~ID~~~~~~~~~~~ 39 (60)
|.++|+++|+++++.+|.+=. .-+.+.+.....+...++
T Consensus 11 llvvlaIiail~~~~~~~~~~~~~~~~~~~~a~~l~~~l~ 50 (143)
T TIGR01708 11 LLVVLAIMGLVAAAAALSLVSHYGTKSLDQVAGRLAARLR 50 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 457889999999999998754 222334444444433333
No 11
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=71.98 E-value=5.7 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhHHHHHhh
Q psy17282 4 VSISPGFVALFTLPKVYENN 23 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYeky 23 (60)
|-+|.|.++.|.+-+++..|
T Consensus 15 TSLY~GLllifvl~vLFssy 34 (37)
T PF02419_consen 15 TSLYWGLLLIFVLAVLFSSY 34 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhhh
Confidence 56899999999998888766
No 12
>PHA02677 hypothetical protein; Provisional
Probab=70.54 E-value=16 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENNKATIDANLEVV 34 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYekyq~~ID~~~~~~ 34 (60)
.||-|+|..++.=.-+|.+-||-+.|=|.+..-.
T Consensus 4 LFLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 4 LFLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899888888899999999999999887643
No 13
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=69.97 E-value=13 Score=18.78 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHhhHHHHHhh---HHHHHHHHHHHHHHHHHHH
Q psy17282 8 PGFVALFTLPKVYENN---KATIDANLEVVQGKIAEIT 42 (60)
Q Consensus 8 i~~v~~fTvP~lYeky---q~~ID~~~~~~~~~~~~~~ 42 (60)
..+.+++++|.+|..= +++++.-.+..|...++..
T Consensus 13 ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W 50 (53)
T PF01484_consen 13 AILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAW 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999753 3344444444455544443
No 14
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.82 E-value=19 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKAT 26 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ 26 (60)
.+.++++|++++..+|.+....+..
T Consensus 16 LVvl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 16 LVVLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4678899999999999998777766
No 15
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=68.54 E-value=18 Score=19.93 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=16.9
Q ss_pred HHHHhhHHHHHHH--HHHHHHHHHHHHHH
Q psy17282 18 KVYENNKATIDAN--LEVVQGKIAEITSK 44 (60)
Q Consensus 18 ~lYekyq~~ID~~--~~~~~~~~~~~~~~ 44 (60)
.+|++|++-|+.. +..++....++.+.
T Consensus 45 ~V~~nY~~fI~as~~I~~m~~~~~~l~~~ 73 (87)
T PF08700_consen 45 LVYENYRDFIEASDEISSMENDLSELRNL 73 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998885 44444444444443
No 16
>PRK10506 hypothetical protein; Provisional
Probab=67.58 E-value=28 Score=21.82 Aligned_cols=44 Identities=5% Similarity=0.017 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENN-KATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYeky-q~~ID~~~~~~~~~~~~~~~~ 44 (60)
|..+|.++++++++.+|.+-... +.+++.....+...+....+.
T Consensus 16 llvvl~Ii~il~~~a~p~~~~~~~~~~~~~~~~~l~~~l~~ar~~ 60 (162)
T PRK10506 16 LLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQLLDFLLRLQED 60 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999876543 334555555555544444443
No 17
>PF01737 Ycf9: YCF9; InterPro: IPR002644 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents PsbZ (Ycf9), which is a core low molecular weight transmembrane protein of photosystem II in thylakoid-containing chloroplasts of cyanobacteria and plants. It is thought to be located at the interface of PSII and LHCII (light-harvesting complex II) complexes, the latter containing the light-harvesting antenna. PsbZ appears to act as a structural factor, or linker, that stabilises the PSII-LHCII supercomplexes, which fail to form in PsbZ-deficient mutants. This may in part be due to the marked decrease in two LHCII antenna proteins, CP26 and CP29, found in PsbZ-deficient mutants, which result in structural changes, as well as functional modifications in PSII []. PsbZ may also be involved in photo-protective processes under sub-optimal growth conditions.; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 3A0B_Z 3ARC_Z 3A0H_Z 3PRQ_Z 4FBY_l 2AXT_z 3PRR_Z 3BZ1_Z 3KZI_Z 1S5L_Z ....
Probab=66.76 E-value=9.1 Score=21.12 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhHHHHH
Q psy17282 3 SVSISPGFVALFTLPKVYE 21 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYe 21 (60)
..|+.+.+++.-++|++|-
T Consensus 7 ~aLi~~Sf~LVVgVPV~~A 25 (59)
T PF01737_consen 7 FALIALSFLLVVGVPVVFA 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4577889999999999995
No 18
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=65.53 E-value=18 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=27.1
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17282 12 ALFTLPKVYENNKATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 12 ~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~ 44 (60)
.++.=|..+..+..+||+-++.++.+++++.+.
T Consensus 96 ~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LKei 128 (145)
T PF12548_consen 96 VIYQDPKAWKDHRLHIDHEIETLQDKIKNLKEI 128 (145)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788899999999999999998887665
No 19
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=63.90 E-value=7.1 Score=25.11 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhHHHHHhhHHH
Q psy17282 5 SISPGFVALFTLPKVYENNKAT 26 (60)
Q Consensus 5 Ll~i~~v~~fTvP~lYekyq~~ 26 (60)
.-|.|+++.|..|.+|.+|+..
T Consensus 36 ~g~~~~~~gF~~Pt~y~~yk~~ 57 (152)
T PF07954_consen 36 GGYGGFMAGFFAPTAYYRYKTG 57 (152)
T ss_pred HHHHHHHHHHhhHHHHHHHhcc
Confidence 3578999999999999999543
No 20
>PF10818 DUF2547: Protein of unknown function (DUF2547); InterPro: IPR020508 This entry contains proteins with no known function.
Probab=61.28 E-value=7.1 Score=23.37 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhhHHHHHh
Q psy17282 2 FSVSISPGFVALFTLPKVYEN 22 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYek 22 (60)
||.=|.+|+|..|++|..=+.
T Consensus 4 FWSQLLlsmiAIFALP~~Q~l 24 (94)
T PF10818_consen 4 FWSQLLLSMIAIFALPEAQEL 24 (94)
T ss_pred cHHHHHHHHHHHHHccchhhh
Confidence 888999999999999987443
No 21
>PF03620 IBV_3C: IBV 3C protein; InterPro: IPR005296 These proteins are the product of ORF 3C from Infectious bronchitis virus. Currently, the function of this protein remains unknown.
Probab=60.93 E-value=27 Score=20.80 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=23.1
Q ss_pred CchHHHHH--HHHHHHhhHHHHHhhHHHHHHH
Q psy17282 1 MFSVSISP--GFVALFTLPKVYENNKATIDAN 30 (60)
Q Consensus 1 ~flTLl~i--~~v~~fTvP~lYekyq~~ID~~ 30 (60)
||+|-+|+ |+|.+.-+-..-.-+-.-+|.+
T Consensus 14 ~Flt~lYv~~gfialYllgk~LqaFvQAaDac 45 (93)
T PF03620_consen 14 SFLTALYVLLGFIALYLLGKALQAFVQAADAC 45 (93)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999887 8888877777766666677764
No 22
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=58.73 E-value=21 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhhHHHHHhhHHHHHHH
Q psy17282 3 SVSISPGFVALFTLPKVYENNKATIDAN 30 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYekyq~~ID~~ 30 (60)
+|++||-+.++|-+|. |=.++-+|
T Consensus 25 ItIlYILLalL~EvPk----YIK~~VrY 48 (117)
T PF07234_consen 25 ITILYILLALLFEVPK----YIKELVRY 48 (117)
T ss_pred HHHHHHHHHHHHhhHH----HHHHHHHH
Confidence 5889999999999995 54555554
No 23
>PRK10574 putative major pilin subunit; Provisional
Probab=58.72 E-value=43 Score=21.05 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
...+.++|++.++.+|.+
T Consensus 13 mIViaIigILaaiaiP~~ 30 (146)
T PRK10574 13 MVVIAIIAILSAIGIPAY 30 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357788999999999984
No 24
>KOG1726|consensus
Probab=57.85 E-value=24 Score=24.10 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17282 22 NNKATIDANLEVVQGKIAEI 41 (60)
Q Consensus 22 kyq~~ID~~~~~~~~~~~~~ 41 (60)
+||.+||+++..++...-+.
T Consensus 95 ~~E~eid~~l~~~k~~~~~~ 114 (225)
T KOG1726|consen 95 KHEEEIDRMLVEAKERVYDA 114 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57999999988776654433
No 25
>KOG0361|consensus
Probab=57.79 E-value=8.4 Score=29.01 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH----HHhhCCCCC
Q psy17282 21 ENNKATIDANLEVVQGKIAEITSK----VKAAIPIGK 53 (60)
Q Consensus 21 ekyq~~ID~~~~~~~~~~~~~~~~----v~~Kip~~~ 53 (60)
|.||.-+|.-+..+..+.+++.+. +++|+|-|-
T Consensus 261 ~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD 297 (543)
T KOG0361|consen 261 EEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGD 297 (543)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchH
Confidence 689999999999999999998877 888998653
No 26
>TIGR03043 PS_II_psbZ photosystem II core protein PsbZ. PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna.
Probab=52.44 E-value=6.2 Score=21.70 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhHHHHH
Q psy17282 3 SVSISPGFVALFTLPKVYE 21 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYe 21 (60)
..|+.+.+++.-++|++|-
T Consensus 7 ~aLi~~Sf~LVVgVPV~~A 25 (58)
T TIGR03043 7 LALVLLSFVLVVGVPVALA 25 (58)
T ss_pred HHHHHHHHHHHhhceeEEe
Confidence 4578889999999999984
No 27
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.81 E-value=44 Score=18.79 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy17282 17 PKVYENNKATIDANLEV 33 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~ 33 (60)
|.=..+.+..||+++..
T Consensus 30 ~~~k~~~~k~i~~yL~e 46 (85)
T PF11337_consen 30 PYQKHKAEKAIDWYLQE 46 (85)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34445667788888753
No 28
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=50.09 E-value=26 Score=16.78 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 18 KVYENNKATIDANLEVVQGKIAEITSKV 45 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~~~~~~~~~~~~v 45 (60)
++|.++|..=..-.+.++.-+++....+
T Consensus 1 IaYKkH~~~kqk~~elAr~a~dkWR~~i 28 (29)
T PF10562_consen 1 IAYKKHQIRKQKQLELARHAADKWRGNI 28 (29)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3688998888888888888777765543
No 29
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=48.97 E-value=44 Score=18.22 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy17282 25 ATIDANLEVVQGKIAEITSKVKA 47 (60)
Q Consensus 25 ~~ID~~~~~~~~~~~~~~~~v~~ 47 (60)
..||.|++.++.+.++=.+-+++
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~ 29 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILS 29 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888877776654444443
No 30
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.27 E-value=71 Score=20.43 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~ 29 (60)
||.++.++++.++---.+|.....-+|.
T Consensus 35 ~~~lI~F~iL~~ll~k~l~~PI~~~l~~ 62 (181)
T PRK13454 35 FWLLVTLVAIYFVLTRVALPRIGAVLAE 62 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444555555555554
No 31
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=48.20 E-value=48 Score=19.23 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17282 24 KATIDANLEVVQGKIAEITSKVKAAIP 50 (60)
Q Consensus 24 q~~ID~~~~~~~~~~~~~~~~v~~Kip 50 (60)
+..|+..++-.+.+++++-..+..|.|
T Consensus 52 e~kiee~v~plreki~dle~SftqKyP 78 (78)
T PF11803_consen 52 EQKIEEAVAPLREKIRDLEKSFTQKYP 78 (78)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 445777777889999999888888877
No 32
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=46.30 E-value=1.5e+02 Score=23.48 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy17282 18 KVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGK 53 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~~~~~~~~~~~~v~~Kip~~~ 53 (60)
..+.-||+..-.++..++.++++..+..+..+|-|.
T Consensus 53 ~~~~~~~~~~~~~i~~ls~~~~~~~~~al~nmPiGi 88 (655)
T COG3887 53 AFTLFYQDSDQNYISYLSYQAEKSLEEALTNMPIGI 88 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 333444444444899999999999999999999763
No 33
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=45.79 E-value=14 Score=18.14 Aligned_cols=13 Identities=0% Similarity=0.156 Sum_probs=9.9
Q ss_pred HHHHhhHHHHHHH
Q psy17282 18 KVYENNKATIDAN 30 (60)
Q Consensus 18 ~lYekyq~~ID~~ 30 (60)
.-|.|||+.+++.
T Consensus 16 ~~fKKyQ~~vnqa 28 (33)
T PF10855_consen 16 YGFKKYQNHVNQA 28 (33)
T ss_pred HHHHHHHHHHhcC
Confidence 3589999988763
No 34
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=44.42 E-value=58 Score=18.32 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHH
Q psy17282 22 NNKATIDANLEV 33 (60)
Q Consensus 22 kyq~~ID~~~~~ 33 (60)
+||..||+..+.
T Consensus 43 kyq~~I~~lte~ 54 (71)
T PF10960_consen 43 KYQEQIEKLTEK 54 (71)
T ss_pred HHHHHHHHHHHH
Confidence 566666665443
No 35
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=44.21 E-value=50 Score=17.53 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
+.||+..-||+++++-.+
T Consensus 24 lmTLLl~fFVlL~s~s~~ 41 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMSSV 41 (58)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 468888888888887544
No 36
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.95 E-value=1e+02 Score=20.95 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17282 6 ISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKVKAAIP 50 (60)
Q Consensus 6 l~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~v~~Kip 50 (60)
+++|+|+.+..-.=|.-||..--.....+..++.++.+.++.|-|
T Consensus 25 li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~ 69 (207)
T COG2976 25 LIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP 69 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345555555555567777776666667778888888888887766
No 37
>CHL00082 psbZ photosystem II protein Z
Probab=43.52 E-value=8.1 Score=21.54 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhHHHHHh
Q psy17282 3 SVSISPGFVALFTLPKVYEN 22 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYek 22 (60)
..|+.+.+++.-++|++|-.
T Consensus 10 ~aLi~~Sf~LVVgVPV~~As 29 (62)
T CHL00082 10 FALIATSFLLVIGVPVVFAS 29 (62)
T ss_pred HHHHHHHHHHHheeeeEEEC
Confidence 45778899999999999853
No 38
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=43.31 E-value=8 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhhHHHHHhhHH
Q psy17282 3 SVSISPGFVALFTLPKVYENNKA 25 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYekyq~ 25 (60)
..|+.+.+++.-++|++|-.-++
T Consensus 10 ~aLi~~SfiLVVgVPV~~Asp~g 32 (62)
T PRK02576 10 LALVVMSFVLVVGVPVAYASPQN 32 (62)
T ss_pred HHHHHHHHHHHheeeeEEECCCc
Confidence 45778899999999999865443
No 39
>COG4970 FimT Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.27 E-value=25 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHhhHHHHHhhHH
Q psy17282 1 MFSVSISPGFVALFTLPKVYENNKA 25 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP~lYekyq~ 25 (60)
|++++.+++++.+|.+|-+=...+.
T Consensus 15 LliviAIlAIla~~A~P~fs~~i~~ 39 (181)
T COG4970 15 LLIVLAILAILAVIAAPNFSQWIRS 39 (181)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4678999999999999998766554
No 40
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=41.22 E-value=22 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.057 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHhhHHH-HHhhHHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKV-YENNKATIDAN 30 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l-Yekyq~~ID~~ 30 (60)
|+||+..-||+++++=.+ -+|+|.-.+.+
T Consensus 25 l~TLLL~FFVlL~smS~~d~~k~~~~~~s~ 54 (252)
T PRK06667 25 MVTLLLCFFVMLFTTNDVDENVLQIISASF 54 (252)
T ss_pred HHHHHHHHHHHHHHhhhcCHHHHHHHHHHh
Confidence 689999999999998765 23444444443
No 41
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=40.52 E-value=24 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHhhHHHHH-hhHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYE-NNKATIDA 29 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYe-kyq~~ID~ 29 (60)
++|||..-||+++++--+=+ |++.-.+.
T Consensus 19 m~TLLL~FFVlL~s~S~vd~~k~~~~~~s 47 (225)
T PRK06742 19 LTMLLLTFFVLLVATSKQDAVKLSKMLEK 47 (225)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 57999999999999875532 44444333
No 42
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=39.34 E-value=60 Score=20.96 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=28.2
Q ss_pred HHHHHHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHh------------hCCCCCcchhh
Q psy17282 9 GFVALFTLPK-VYENNKATIDANLEVVQGKIAEITSKVKA------------AIPIGKKEEKK 58 (60)
Q Consensus 9 ~~v~~fTvP~-lYekyq~~ID~~~~~~~~~~~~~~~~v~~------------Kip~~~~k~k~ 58 (60)
.-++-+|+=. -|+.+++.+...++.+...-+++...+.+ |+|+....+|.
T Consensus 35 ~Mv~~lT~gkk~~~~~~~~~~~~~~~~~~~~~~ll~l~d~D~~af~~~~~a~klPk~T~eek~ 97 (184)
T PF04961_consen 35 SMVANLTLGKKKYEDVEEELKEIIEKLEELREELLDLADEDAEAFNAVMAAYKLPKETDEEKA 97 (184)
T ss_dssp HHHHHCTTTSTTSGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCTS---SGGGTT
T ss_pred HHHHHHhCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHh
Confidence 3344455522 48888888888877766655555544332 77776655443
No 43
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=39.23 E-value=25 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
++|||..-||+++++--+
T Consensus 23 l~TLLL~FFVlL~smS~v 40 (257)
T PRK08457 23 FLSLLLALFIALYAISAV 40 (257)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 579999999999998766
No 44
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=38.68 E-value=82 Score=18.37 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17282 19 VYENNKATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 19 lYekyq~~ID~~~~~~~~~~~~~~~~ 44 (60)
-||+.+.-|..+..+..++..+..+.
T Consensus 47 hyekfe~miqehtdkfnkkm~ehseh 72 (90)
T PF03037_consen 47 HYEKFERMIQEHTDKFNKKMHEHSEH 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777766655554444444433
No 45
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=37.30 E-value=83 Score=18.02 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=8.3
Q ss_pred hhHHHHHhhHHHHHHHHHHH
Q psy17282 15 TLPKVYENNKATIDANLEVV 34 (60)
Q Consensus 15 TvP~lYekyq~~ID~~~~~~ 34 (60)
++-.+.|+|.+.+=...+.+
T Consensus 43 ~~E~l~e~Y~~~~w~~F~~L 62 (72)
T PF13198_consen 43 IIEPLFELYKDWFWNPFNAL 62 (72)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 33344444444444433333
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.93 E-value=92 Score=18.44 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHhhHHH--------HHhhHHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKV--------YENNKATIDAN 30 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l--------Yekyq~~ID~~ 30 (60)
.++++.+++++.+..+.+ |.+-+.+++..
T Consensus 3 ~~~~vll~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~ 39 (105)
T PRK00888 3 LLTLLLLALLVWLQYSLWFGKNGILDYWRVNDQVAAQ 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 356777788888888875 55555666553
No 47
>KOG0860|consensus
Probab=36.68 E-value=62 Score=20.06 Aligned_cols=24 Identities=8% Similarity=0.447 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q psy17282 21 ENNKATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 21 ekyq~~ID~~~~~~~~~~~~~~~~ 44 (60)
++=|.|||..++.++..++++.+.
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER 55 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLER 55 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 345889999888888877776554
No 48
>PF15463 ECM11: Extracellular mutant protein 11
Probab=35.96 E-value=1.1e+02 Score=18.88 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 18 KVYENNKATIDANLEVVQGKIAEITSKVK 46 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~~~~~~~~~~~~v~ 46 (60)
..++.++++|.+..+.++.+...+..++.
T Consensus 101 ~~~~~fe~eI~~R~eav~~~~~~l~~kL~ 129 (139)
T PF15463_consen 101 KKFAVFEDEINRRAEAVRAQGEQLDRKLE 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999988888888777754
No 49
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=35.21 E-value=41 Score=17.23 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHH
Q psy17282 4 VSISPGFVALFTLPKVYENNKAT 26 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYekyq~~ 26 (60)
+++.++|.++-|+--+|..|-+.
T Consensus 2 niiL~~FFLL~TLeNlYatyve~ 24 (43)
T PF07599_consen 2 NIILIGFFLLETLENLYATYVEY 24 (43)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999888554
No 50
>PF14013 MT0933_antitox: MT0933-like antitoxin protein
Probab=32.78 E-value=46 Score=17.49 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=6.6
Q ss_pred HhhHHHHHHHHHH
Q psy17282 21 ENNKATIDANLEV 33 (60)
Q Consensus 21 ekyq~~ID~~~~~ 33 (60)
+++.+.||..+.+
T Consensus 10 ~~~~dk~~~~iDK 22 (51)
T PF14013_consen 10 SKNPDKIDQGIDK 22 (51)
T ss_pred HHChHHHHHHHHH
Confidence 3455555555443
No 51
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.54 E-value=89 Score=17.00 Aligned_cols=24 Identities=4% Similarity=-0.056 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhHHHHHhhHHH
Q psy17282 3 SVSISPGFVALFTLPKVYENNKAT 26 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYekyq~~ 26 (60)
+.++.+++++.+++=.+|.+++-.
T Consensus 4 l~~~l~~~v~~~~~~~v~~~~~~~ 27 (85)
T TIGR02209 4 LYVLLLLAILVSAISVVSAQHQTR 27 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777776544
No 52
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=32.45 E-value=89 Score=17.21 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=13.1
Q ss_pred HHHHHHHHHHh-----hHHHHHhhHHH
Q psy17282 5 SISPGFVALFT-----LPKVYENNKAT 26 (60)
Q Consensus 5 Ll~i~~v~~fT-----vP~lYekyq~~ 26 (60)
++.|.++.+|+ .+--+.+||+.
T Consensus 13 VLLISfiIlfgRl~Y~~I~a~~hHq~k 39 (59)
T PF11119_consen 13 VLLISFIILFGRLIYSAIGAWVHHQDK 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555554 66677777765
No 53
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=32.02 E-value=16 Score=24.13 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=6.0
Q ss_pred HHhhHHHHH
Q psy17282 20 YENNKATID 28 (60)
Q Consensus 20 Yekyq~~ID 28 (60)
||+||+.+|
T Consensus 202 ~~~~~~~~~ 210 (210)
T PRK01100 202 YEKYERNID 210 (210)
T ss_pred HHHHHhccC
Confidence 677776654
No 54
>PRK06778 hypothetical protein; Validated
Probab=31.91 E-value=38 Score=23.50 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|.||+..-||+++++=.+
T Consensus 29 ~~TLLLaFFVlL~smS~v 46 (289)
T PRK06778 29 FTLAMMALFMVLWIVNSV 46 (289)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 689999999999887654
No 55
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=31.82 E-value=9.9 Score=27.71 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhHHHHHhhHH
Q psy17282 5 SISPGFVALFTLPKVYENNKA 25 (60)
Q Consensus 5 Ll~i~~v~~fTvP~lYekyq~ 25 (60)
++|.++++.++-=++|+|||.
T Consensus 22 mIF~tV~~s~~~~i~YDrre~ 42 (382)
T PF11711_consen 22 MIFWTVTGSITGAIIYDRREQ 42 (382)
T ss_pred eehhhHhhhhhheeEecHHHH
Confidence 678899999999999999985
No 56
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=31.70 E-value=39 Score=22.73 Aligned_cols=18 Identities=17% Similarity=0.419 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|.||+..-||+++++=.+
T Consensus 26 ~vTlLlaFFvlL~s~s~~ 43 (259)
T PRK07734 26 LLTLLLALFIVLFAMSSI 43 (259)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 689999999998887654
No 57
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=31.62 E-value=39 Score=23.17 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|+||+..-||+++++=.+
T Consensus 24 ~mTLLlaFFVlL~smS~~ 41 (281)
T PRK09038 24 FITLLFAFFVVMYAISSV 41 (281)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 689999999998877543
No 58
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=31.37 E-value=39 Score=23.57 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
++|||+.-||+++++--+
T Consensus 24 lmTLLm~FFVlL~S~S~~ 41 (302)
T PRK08944 24 LMSLLMCFFVLLLSFSEM 41 (302)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 578888888888887543
No 59
>PRK14756 hypothetical protein; Provisional
Probab=31.22 E-value=69 Score=15.26 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|-|.+-++++.+|++-++
T Consensus 10 ~tTvvaL~~Iva~~~ta~ 27 (29)
T PRK14756 10 VTTIIVLGLIVAVGLTAA 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457777888888887543
No 60
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=31.01 E-value=44 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHHH--HHHHHhhHHHHHhhHHHHHH
Q psy17282 6 ISPG--FVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 6 l~i~--~v~~fTvP~lYekyq~~ID~ 29 (60)
+|+| ++.....--.|++||+.++-
T Consensus 286 iF~G~lfLfFLGf~~ay~~yQ~~l~L 311 (438)
T PF07399_consen 286 IFMGALFLFFLGFTQAYKRYQSPLIL 311 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhh
Confidence 4555 44455566789999999875
No 61
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=30.77 E-value=95 Score=16.74 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.8
Q ss_pred HhhHHHHHhhHHHHHHH
Q psy17282 14 FTLPKVYENNKATIDAN 30 (60)
Q Consensus 14 fTvP~lYekyq~~ID~~ 30 (60)
+|..-+|+.|++..+..
T Consensus 23 ~~~~~vy~~Y~~~c~~~ 39 (87)
T cd08768 23 ATTGEVYEVYEELCEEI 39 (87)
T ss_pred ccHHHHHHHHHHHHHHc
Confidence 58889999999999865
No 62
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=30.64 E-value=42 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|+||+..-||+++++=.+
T Consensus 22 ~~TlLlafFvlL~s~s~~ 39 (230)
T PRK06925 22 LITLILVFFILLFSMSQI 39 (230)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 678988888888887654
No 63
>KOG0629|consensus
Probab=30.23 E-value=54 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17282 20 YENNKATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 20 Yekyq~~ID~~~~~~~~~~~~~~~~ 44 (60)
|+.||.+||+++..++-..+++.+.
T Consensus 389 ~~Gfe~~v~k~~~lA~yl~~~lrer 413 (510)
T KOG0629|consen 389 TQGFEAQVDKCLRLAEYLYDRLRER 413 (510)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999998888877765
No 64
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=30.15 E-value=18 Score=24.48 Aligned_cols=42 Identities=12% Similarity=0.378 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17282 9 GFVALFTLPKVYENNKA--TIDANLEVVQGKIAEITSKVKAAIP 50 (60)
Q Consensus 9 ~~v~~fTvP~lYekyq~--~ID~~~~~~~~~~~~~~~~v~~Kip 50 (60)
|+|+..++.-+-..-.+ +++.+...++..++++.+.+...+|
T Consensus 28 Gvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~P 71 (266)
T PF14331_consen 28 GVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLP 71 (266)
T ss_pred EEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 55666677777777666 7899999999999999998777666
No 65
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=29.84 E-value=1.1e+02 Score=17.38 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=18.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy17282 20 YENNKATIDANLEVVQGKIAEITSKVKAAIPI 51 (60)
Q Consensus 20 Yekyq~~ID~~~~~~~~~~~~~~~~v~~Kip~ 51 (60)
+||+...+..+-..++.-.+.+.+.+.+-+|.
T Consensus 15 ~eRw~~i~~~~k~~i~~l~~~~~~~~~~~~~~ 46 (95)
T PF15508_consen 15 EERWVQIAKDYKDEIRELIEVLKDLLQSFVPS 46 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56777766666666655555555555554443
No 66
>PHA00731 hypothetical protein
Probab=29.11 E-value=1.3e+02 Score=17.99 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHH
Q psy17282 13 LFTLPKVYENNKATIDANLEVVQGKIA 39 (60)
Q Consensus 13 ~fTvP~lYekyq~~ID~~~~~~~~~~~ 39 (60)
+-.+-.+|+-|++.+|..-+.+|+.+-
T Consensus 59 l~klkrLYevy~d~~~etQeaIrKE~l 85 (96)
T PHA00731 59 LLKLKRLYEVYEDSEDETQEAIRKEVL 85 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999876666665543
No 67
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=28.76 E-value=1.9e+02 Score=19.66 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=20.9
Q ss_pred HHHHHHHHhhHHH-HHhhHHHHHHHHHHH
Q psy17282 7 SPGFVALFTLPKV-YENNKATIDANLEVV 34 (60)
Q Consensus 7 ~i~~v~~fTvP~l-Yekyq~~ID~~~~~~ 34 (60)
.++-|+-||.-.= |+.|+++++..++..
T Consensus 38 L~~MV~~lt~gKk~Y~~~d~e~k~i~~~~ 66 (208)
T COG3404 38 LASMVANLTRGKKGYEDYDDEMKEILEEL 66 (208)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 3455666777665 999999999976654
No 68
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=28.41 E-value=38 Score=18.55 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhHHHHHhhHHHHHH
Q psy17282 5 SISPGFVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 5 Ll~i~~v~~fTvP~lYekyq~~ID~ 29 (60)
|+.+.+++++.+|.+|.+.+..+=-
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G 27 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFG 27 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccC
Confidence 5667788888888888887766533
No 69
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=28.37 E-value=47 Score=23.43 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|+||+..-||+++++=.+
T Consensus 33 ~vTLLLaFFVlL~smS~v 50 (317)
T PRK09041 33 FMTAMMAFFLVMWLLSSS 50 (317)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 689999999999887655
No 70
>KOG1792|consensus
Probab=27.92 E-value=2e+02 Score=19.54 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhHHHHHhh-----------------------HHHHHHHHHHHHHHHHHHHHH
Q psy17282 4 VSISPGFVALFTLPKVYENN-----------------------KATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYeky-----------------------q~~ID~~~~~~~~~~~~~~~~ 44 (60)
++.+.+-+++++++++|..+ |+.++.+...++.+++...+.
T Consensus 76 ~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~ 139 (230)
T KOG1792|consen 76 SVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSE 139 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666665554 566666777666666555444
No 71
>PF10445 DUF2456: Protein of unknown function (DUF2456); InterPro: IPR018852 This entry represents a family of uncharacterised proteins.
Probab=27.73 E-value=59 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhhHHH
Q psy17282 3 SVSISPGFVALFTLPKV 19 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~l 19 (60)
.-|+|-|++++.|-|+.
T Consensus 73 ~KlIyG~vLgllttP~~ 89 (94)
T PF10445_consen 73 FKLIYGGVLGLLTTPVM 89 (94)
T ss_pred HHHHHHHHHHHHhCHHH
Confidence 35789999999999975
No 72
>KOG4603|consensus
Probab=27.56 E-value=1.4e+02 Score=20.12 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy17282 18 KVYENNKATIDANLEVVQGKIAEITSKVKAAIPIGK 53 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~~~~~~~~~~~~v~~Kip~~~ 53 (60)
-+|.-||+.+..+ .+.+.-++++.+++.+-.|..+
T Consensus 156 ~v~~~y~~~~~~w-rk~krmf~ei~d~~~e~~pk~k 190 (201)
T KOG4603|consen 156 QVYREYQKYCKEW-RKRKRMFREIIDKLLEGLPKKK 190 (201)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCcchH
Confidence 3566677666543 3445567777777777777643
No 73
>PF14045 YIEGIA: YIEGIA protein
Probab=26.90 E-value=2.4e+02 Score=20.11 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHH-HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17282 4 VSISP-GFVALFTLPKVYENNKATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 4 TLl~i-~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~ 44 (60)
+|-++ +-+++..+|.+.++.=.-|- ++..+-.|+++++++
T Consensus 37 ~LG~IAa~LGavaiPAL~~keytAvT-FLaLAaqQFRdVR~m 77 (285)
T PF14045_consen 37 SLGFIAAALGAVAIPALLEKEYTAVT-FLALAAQQFRDVRNM 77 (285)
T ss_pred HHHHHHHHhhhhhhHHHhccchHHHH-HHHHHHHHHHHHHHH
Confidence 44444 77899999999998665553 566667777777766
No 74
>PHA03255 BDLF3; Provisional
Probab=26.74 E-value=70 Score=21.62 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHhhH
Q psy17282 2 FSVSISPGFVALFTLP 17 (60)
Q Consensus 2 flTLl~i~~v~~fTvP 17 (60)
+|||+|+|+-.++-+-
T Consensus 184 lwtlvfvgltflmlil 199 (234)
T PHA03255 184 LWTLVFVGLTFLMLIL 199 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889888876555443
No 75
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.54 E-value=1.9e+02 Score=18.97 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~ 29 (60)
||.++-+++++++---++|.....-+|.
T Consensus 57 ~w~~I~FliL~~lL~k~~~~pI~~vLe~ 84 (204)
T PRK09174 57 LWLAITFGLFYLFMSRVILPRIGGIIET 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555444444444
No 76
>KOG3614|consensus
Probab=26.06 E-value=41 Score=28.59 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHhhHH
Q psy17282 2 FSVSISPGFVALFTLPK 18 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~ 18 (60)
++++.|++|+++||-=+
T Consensus 797 ~~~l~yi~FL~lftYvl 813 (1381)
T KOG3614|consen 797 LNVLSYIAFLLLFTYVL 813 (1381)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67899999999998543
No 77
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=25.97 E-value=1.5e+02 Score=17.50 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 4 VSISPGFVALFTLPKVYENNKATIDANLEVVQGKIAEITSKV 45 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYekyq~~ID~~~~~~~~~~~~~~~~v 45 (60)
+.+++.++..+.+=.+-.+|+.++..-.-.-++-..+.++++
T Consensus 42 ~~~~~~~l~s~~l~~li~~f~~~ikD~~Ii~~ev~~EYn~Kf 83 (99)
T PF10332_consen 42 TTLFLMVLLSFQLYFLISRFEQLIKDKQIIHKEVMHEYNTKF 83 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 444555555566666677888888776555555566665553
No 78
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=25.97 E-value=1.1e+02 Score=18.83 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.7
Q ss_pred hhHHHHHhhHHHHHHHHH
Q psy17282 15 TLPKVYENNKATIDANLE 32 (60)
Q Consensus 15 TvP~lYekyq~~ID~~~~ 32 (60)
++-.+|.++++.||++.+
T Consensus 43 ~l~kVy~~F~eLVe~~~G 60 (108)
T PF10664_consen 43 ALQKVYRKFDELVESYAG 60 (108)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 567899999999999865
No 79
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=42 Score=18.45 Aligned_cols=8 Identities=0% Similarity=-0.359 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q psy17282 3 SVSISPGF 10 (60)
Q Consensus 3 lTLl~i~~ 10 (60)
++|+++|+
T Consensus 18 ~~l~fiav 25 (60)
T COG4736 18 FTLFFIAV 25 (60)
T ss_pred HHHHHHHH
Confidence 33444443
No 80
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.98 E-value=1.5e+02 Score=17.30 Aligned_cols=22 Identities=23% Similarity=-0.041 Sum_probs=14.3
Q ss_pred hHHHHH-HHHHHHhhHHHHHhhH
Q psy17282 3 SVSISP-GFVALFTLPKVYENNK 24 (60)
Q Consensus 3 lTLl~i-~~v~~fTvP~lYekyq 24 (60)
+|+.++ |+++++.+-..|-.|+
T Consensus 2 i~l~iv~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 2 INLQIVGGVGAVVALILAYLWWK 24 (87)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 455444 6777777777777665
No 81
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=24.96 E-value=1.6e+02 Score=17.45 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy17282 24 KATIDANLEVVQGKIAEITSKVKAAIPI 51 (60)
Q Consensus 24 q~~ID~~~~~~~~~~~~~~~~v~~Kip~ 51 (60)
..-||..++.+..|+++..++...+.-.
T Consensus 71 y~AID~a~dklerQLrK~K~k~~~~~~~ 98 (113)
T PRK10324 71 YTAINELINKLERQLNKLQHKGEARRAA 98 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3568999999999999999888776543
No 82
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=24.95 E-value=1.4e+02 Score=17.34 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHhhHHHHHHH----------HHHHHHHHHHHHHHHHhhCCCC
Q psy17282 17 PKVYENNKATIDAN----------LEVVQGKIAEITSKVKAAIPIG 52 (60)
Q Consensus 17 P~lYekyq~~ID~~----------~~~~~~~~~~~~~~v~~Kip~~ 52 (60)
|..|.+|..++-.- ...+...-++....+++..|++
T Consensus 16 ~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~lle~~PGa 61 (83)
T PF10963_consen 16 PTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELLEENPGA 61 (83)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHHHHCCCH
Confidence 56788888877652 2334444555555566777764
No 83
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=24.94 E-value=2e+02 Score=18.46 Aligned_cols=31 Identities=16% Similarity=-0.116 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Q psy17282 3 SVSISPGFVALFTLPKVYENNKATIDANLEV 33 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYekyq~~ID~~~~~ 33 (60)
++|+.+++++.+.+=.+|+-=++.|...-..
T Consensus 2 ~~L~~i~~v~~~~La~v~~~T~~~I~~~~~~ 32 (186)
T TIGR01947 2 LILGLFAAVSAGLLALVNQFTKEVIAEAEAK 32 (186)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5788889999999999999888888775443
No 84
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=24.90 E-value=1.9e+02 Score=18.23 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=20.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17282 17 PKVYENNKATIDANLEVVQGKIAEITS 43 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~~~~~~~~~~~ 43 (60)
+..|+.+++.+++....+.+.++++.+
T Consensus 40 ~~~y~~f~~~~~~~~~~l~~~L~~~~~ 66 (160)
T PF08484_consen 40 IEYYENFAKRVEQSKAELREFLEKLKA 66 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999887777776665544
No 85
>PLN02614 long-chain acyl-CoA synthetase
Probab=24.74 E-value=74 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.6
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy17282 17 PKVYENNKATIDANLEVV 34 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~~ 34 (60)
+.++++|+++||...+..
T Consensus 641 ~~i~~~y~~~i~~ly~~~ 658 (666)
T PLN02614 641 PQLLKYYQSVIDEMYKTT 658 (666)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 568999999999977653
No 86
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=24.70 E-value=1e+02 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=12.4
Q ss_pred chHHHHHHHH----HHHhhHHHHH
Q psy17282 2 FSVSISPGFV----ALFTLPKVYE 21 (60)
Q Consensus 2 flTLl~i~~v----~~fTvP~lYe 21 (60)
||+++-..++ ++|.+|+++=
T Consensus 4 f~~i~~~i~l~g~~lll~~~iv~C 27 (103)
T PF06678_consen 4 FWFILKSIFLFGPFLLLIVSIVQC 27 (103)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5666555444 7777777753
No 87
>PF05398 PufQ: PufQ cytochrome subunit; InterPro: IPR008800 This family consists of bacterial PufQ proteins. PufQ is required for bacteriochlorophyll biosynthesis serving a regulatory function in the formation of photosynthetic complexes [].; GO: 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process
Probab=24.64 E-value=72 Score=18.29 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhHHH
Q psy17282 6 ISPGFVALFTLPKV 19 (60)
Q Consensus 6 l~i~~v~~fTvP~l 19 (60)
+|.++|.+-++|..
T Consensus 23 vYFalIflaAlP~a 36 (73)
T PF05398_consen 23 VYFALIFLAALPFA 36 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777777764
No 88
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=24.56 E-value=73 Score=20.25 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
||.|++.+.++++++|..
T Consensus 5 ~~~~~~~~~ll~~~~~a~ 22 (180)
T PRK10894 5 SLNLLLASSLLAASIPAF 22 (180)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 677888888888888864
No 89
>PRK11677 hypothetical protein; Provisional
Probab=24.45 E-value=1.9e+02 Score=18.12 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.0
Q ss_pred HhhHHHHHHH
Q psy17282 21 ENNKATIDAN 30 (60)
Q Consensus 21 ekyq~~ID~~ 30 (60)
++|+.++..+
T Consensus 46 e~YkqeV~~H 55 (134)
T PRK11677 46 EEYRQELVSH 55 (134)
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 90
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.31 E-value=1.8e+02 Score=17.90 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~ 29 (60)
||+++-+.+++++---++|.....-+|.
T Consensus 12 ~~~~i~Flil~~ll~~~l~~pi~~~l~~ 39 (164)
T PRK14471 12 FWQTILFLILLLLLAKFAWKPILGAVKE 39 (164)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555555555555545666665555555
No 91
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=24.29 E-value=59 Score=23.68 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=14.0
Q ss_pred HHHHHhhHHHHHHHHH
Q psy17282 17 PKVYENNKATIDANLE 32 (60)
Q Consensus 17 P~lYekyq~~ID~~~~ 32 (60)
|.+|+.|+--||+...
T Consensus 309 p~vyqtYrvMvDRslk 324 (353)
T PF03268_consen 309 PQVYQTYRVMVDRSLK 324 (353)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999643
No 92
>KOG4769|consensus
Probab=24.09 E-value=83 Score=20.92 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHhhHHHHH
Q psy17282 3 SVSISPGFVALFTLPKVYE 21 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYe 21 (60)
|+....+++++.|+|++-.
T Consensus 122 ws~~iT~~llllslPvl~~ 140 (182)
T KOG4769|consen 122 WSKSKTCKLLLLTLPVLLD 140 (182)
T ss_pred HHHHHHHHHHHHhhHHHhh
Confidence 6778889999999999753
No 93
>PF15339 Afaf: Acrosome formation-associated factor
Probab=23.99 E-value=98 Score=20.80 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHhhHHHHHh
Q psy17282 2 FSVSISPGFVALFTLPKVYEN 22 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYek 22 (60)
++||+.+..+++|..-.+|.-
T Consensus 138 LmTl~lfv~Ll~~c~atlykl 158 (200)
T PF15339_consen 138 LMTLFLFVILLAFCSATLYKL 158 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999999999864
No 94
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.97 E-value=1.8e+02 Score=17.81 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=24.3
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHH-------HHHHHHHHHHH
Q psy17282 9 GFVALFTLPKVYENNKATIDANLEV-------VQGKIAEITSK 44 (60)
Q Consensus 9 ~~v~~fTvP~lYekyq~~ID~~~~~-------~~~~~~~~~~~ 44 (60)
+.+++=+.-.++|+=++.||..+.. ++.-++++...
T Consensus 12 ~~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q 54 (108)
T COG3937 12 ALIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQ 54 (108)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3444447888999999999998653 34445544444
No 95
>KOG2447|consensus
Probab=23.84 E-value=50 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHhhH
Q psy17282 1 MFSVSISPGFVALFTLP 17 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP 17 (60)
||-||.|++.++++|.-
T Consensus 258 mFqtL~yla~lg~~tfl 274 (287)
T KOG2447|consen 258 MFQTLKYLAYLGAPTFL 274 (287)
T ss_pred HHHHHHHHHHHhhhHhh
Confidence 68899999988888763
No 96
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.61 E-value=1.6e+02 Score=17.11 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=19.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 18 KVYENNKATIDANLEVVQGKIAEITSKVK 46 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~~~~~~~~~~~~v~ 46 (60)
-+|.+|+++.|.-.......+.+.+....
T Consensus 67 ~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~ 95 (109)
T PF06881_consen 67 ELYEKLKKEREEKLKEATERLRKKIKKLQ 95 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888877655555555444443
No 97
>PF01311 Bac_export_1: Bacterial export proteins, family 1; InterPro: IPR002010 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "R" here for nomenclature purposes, includes the Salmonella and Shigella SpaR, the Yersinia YscT, Rhizobium Y4YN, and the Erwinia HrcT genes []. The flagellar protein FliR also shares similarity, probably due to evolution of the type III secretion system from the flagellar biosynthetic pathway. ; GO: 0006605 protein targeting, 0016020 membrane
Probab=22.98 E-value=2.1e+02 Score=19.14 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q psy17282 6 ISPGFVALFTLPKVYENNKATIDANLEVV 34 (60)
Q Consensus 6 l~i~~v~~fTvP~lYekyq~~ID~~~~~~ 34 (60)
+.--+++..++|.+.+..++.+++..+..
T Consensus 220 ~~gl~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PF01311_consen 220 LVGLLLLILSLPVLIPLFENLFSEMFDTL 248 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456778899999999999999887653
No 98
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=95 Score=21.23 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHhhHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYE 21 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYe 21 (60)
+.||+..|+++.|+.=..|-
T Consensus 127 lItlll~a~vgGfamy~my~ 146 (226)
T COG4858 127 LITLLLTAVVGGFAMYIMYY 146 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 47899999999999887764
No 99
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=22.53 E-value=1.6e+02 Score=16.53 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17282 19 VYENNKATIDANLEVVQGKIAEITSKVK 46 (60)
Q Consensus 19 lYekyq~~ID~~~~~~~~~~~~~~~~v~ 46 (60)
+.++|..++|.++......=+..++.+.
T Consensus 52 ~~~~~~~e~~~fikt~s~~DQ~~y~~~~ 79 (82)
T PF14747_consen 52 FFEKYKAEVDAFIKTQSEEDQTAYNAFV 79 (82)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3455555566665554433344444433
No 100
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.21 E-value=2.1e+02 Score=17.88 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhhHHHHHhhHHHHHH
Q psy17282 2 FSVSISPGFVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~lYekyq~~ID~ 29 (60)
||+++-+.+++.+---.+|.....-+|.
T Consensus 22 ~~~~i~Flil~~lL~~~l~kpi~~~l~~ 49 (175)
T PRK14472 22 FWTAVTFVIVLLILKKIAWGPILSALEE 49 (175)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4554444444433334444444444443
No 101
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=21.99 E-value=72 Score=16.19 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=13.3
Q ss_pred chHHHHHH--HHHHHhhHHHHHhhHHHHHH
Q psy17282 2 FSVSISPG--FVALFTLPKVYENNKATIDA 29 (60)
Q Consensus 2 flTLl~i~--~v~~fTvP~lYekyq~~ID~ 29 (60)
++.|+.-| +++.-+.-.++-...|.+++
T Consensus 9 l~Sl~aG~~iVv~~i~~ali~VSq~D~v~R 38 (39)
T PF06596_consen 9 LLSLVAGAVIVVIPIAGALIFVSQFDRVKR 38 (39)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCCS----
T ss_pred HHHHHhhhhhhhhhhhhheEEEeccCcccc
Confidence 34455544 34455566666666666654
No 102
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.77 E-value=1.8e+02 Score=16.89 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17282 24 KATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 24 q~~ID~~~~~~~~~~~~~~~~ 44 (60)
.++||.|+..+...+..+...
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e 40 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRE 40 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899888776666655544
No 103
>KOG3457|consensus
Probab=21.55 E-value=1.2e+02 Score=17.98 Aligned_cols=20 Identities=15% Similarity=-0.122 Sum_probs=11.4
Q ss_pred CchHHHHHHHHH-HHhhHHHH
Q psy17282 1 MFSVSISPGFVA-LFTLPKVY 20 (60)
Q Consensus 1 ~flTLl~i~~v~-~fTvP~lY 20 (60)
+++.+.||+.|. ++-+-.+|
T Consensus 64 LvmSvgFIasV~~LHi~gK~~ 84 (88)
T KOG3457|consen 64 LVMSVGFIASVFALHIWGKLT 84 (88)
T ss_pred hhhhHHHHHHHHHHHHHHHHh
Confidence 467888885544 44444433
No 104
>PF14926 DUF4498: Domain of unknown function (DUF4498)
Probab=21.34 E-value=93 Score=21.55 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q psy17282 21 ENNKATIDANLEVVQGKIAEITS 43 (60)
Q Consensus 21 ekyq~~ID~~~~~~~~~~~~~~~ 43 (60)
-+|+|.|+.|++..+.-++.+.+
T Consensus 169 ~Q~ed~~~~Yl~~tk~lYk~lv~ 191 (247)
T PF14926_consen 169 CQYEDDLDPYLDTTKSLYKDLVS 191 (247)
T ss_pred ccchhhhHHHHHHHHHHHHhheE
Confidence 48999999999999998887754
No 105
>PHA02047 phage lambda Rz1-like protein
Probab=21.22 E-value=2.1e+02 Score=17.39 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=9.2
Q ss_pred CchHHHHHHHHHHHhhH
Q psy17282 1 MFSVSISPGFVALFTLP 17 (60)
Q Consensus 1 ~flTLl~i~~v~~fTvP 17 (60)
|=.|++.+.++.+..+-
T Consensus 1 mr~t~~~~~~~v~~~~g 17 (101)
T PHA02047 1 MRRTIVAILVLVVVALG 17 (101)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 44566666555554444
No 106
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=21.12 E-value=2.3e+02 Score=17.85 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=13.9
Q ss_pred hHHHHHhhHHHHHHHHHH
Q psy17282 16 LPKVYENNKATIDANLEV 33 (60)
Q Consensus 16 vP~lYekyq~~ID~~~~~ 33 (60)
.-.+|++-+|.||.+.+.
T Consensus 45 ~d~~y~~~~dLiD~F~E~ 62 (126)
T PHA02604 45 YEFFYEEMPDLIDKFAEQ 62 (126)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 456888889999997653
No 107
>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].
Probab=20.79 E-value=1.2e+02 Score=20.67 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17282 17 PKVYENNKATIDANLEVVQGKIAEITSKVKAAIPIG 52 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~~~~~~~~~~~~v~~Kip~~ 52 (60)
-.+|+|+++.=++.+..+-+++++....+.+-+|..
T Consensus 57 ~PVy~Kf~~vP~~vL~fvDrKVD~~~~~~d~~vPp~ 92 (216)
T PF05755_consen 57 GPVYDKFHDVPFEVLKFVDRKVDESVTKLDRHVPPV 92 (216)
T ss_pred chHHHHhccCcHHHHHHHhhhHHHHHHHHHhhCCHH
Confidence 357999999888888888888888888888777753
No 108
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.75 E-value=2.3e+02 Score=17.73 Aligned_cols=10 Identities=0% Similarity=0.315 Sum_probs=4.0
Q ss_pred HhhHHHHHHH
Q psy17282 21 ENNKATIDAN 30 (60)
Q Consensus 21 ekyq~~ID~~ 30 (60)
++-++.|..-
T Consensus 46 ~~R~~~I~~~ 55 (173)
T PRK13460 46 DERASGVQND 55 (173)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 109
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=20.73 E-value=1.1e+02 Score=17.01 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHHHHhhH
Q psy17282 4 VSISPGFVALFTLPKVYENNK 24 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYekyq 24 (60)
+|+=|-+|++|+-|++-..-|
T Consensus 3 nllkillilafa~pvfassmq 23 (65)
T PF10880_consen 3 NLLKILLILAFASPVFASSMQ 23 (65)
T ss_pred hHHHHHHHHHHhhhHhhhccc
Confidence 467778889999999877554
No 110
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=20.73 E-value=71 Score=20.39 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=10.4
Q ss_pred CchHHHHHHHHHHHh
Q psy17282 1 MFSVSISPGFVALFT 15 (60)
Q Consensus 1 ~flTLl~i~~v~~fT 15 (60)
|+|+|+.+.+++++.
T Consensus 9 MilSL~vl~~~~~~i 23 (169)
T PF14030_consen 9 MILSLAVLVAIVALI 23 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677887776666655
No 111
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=20.17 E-value=1.1e+02 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHH
Q psy17282 18 KVYENNKATIDANLEV 33 (60)
Q Consensus 18 ~lYekyq~~ID~~~~~ 33 (60)
-+|.+|++.||.+++.
T Consensus 48 ~i~~ey~~lvE~~le~ 63 (121)
T PF11527_consen 48 EIHQEYKELVEKLLEE 63 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888888887664
No 112
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=20.09 E-value=2.3e+02 Score=17.45 Aligned_cols=11 Identities=9% Similarity=0.347 Sum_probs=6.2
Q ss_pred HHHhhHHHHHH
Q psy17282 19 VYENNKATIDA 29 (60)
Q Consensus 19 lYekyq~~ID~ 29 (60)
.|..++.....
T Consensus 17 ~~~~~~~~~~~ 27 (188)
T PF11845_consen 17 SYSQQQKQAEE 27 (188)
T ss_pred HHHHHHHHHHH
Confidence 56666655544
No 113
>PRK11020 hypothetical protein; Provisional
Probab=20.07 E-value=2.4e+02 Score=17.60 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHhhHHHHHHHHHHH---HHH-HHHHHHH--HHhhCCCCCcchhhhC
Q psy17282 17 PKVYENNKATIDANLEVV---QGK-IAEITSK--VKAAIPIGKKEEKKEQ 60 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~~---~~~-~~~~~~~--v~~Kip~~~~k~k~~~ 60 (60)
+-+|-++.++||.....+ +.+ ..++... -+..+|..+.=+|+||
T Consensus 30 ~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQ 79 (118)
T PRK11020 30 AEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQ 79 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHH
Confidence 456778888888875543 222 2222222 3356888777778776
No 114
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=20.07 E-value=3.6e+02 Score=19.76 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy17282 4 VSISPGFVALFTLPKVY-ENNKATIDANLEVVQGKIAEITSKVKAAIP 50 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lY-ekyq~~ID~~~~~~~~~~~~~~~~v~~Kip 50 (60)
.++|+.++.+| |.++ -+|-.+|...+..+..-.++..+.+.+.+-
T Consensus 9 ~l~~~~~i~~~--q~iq~~~~~~~I~~~l~~L~~~~~~a~~~~~~~l~ 54 (355)
T PF07431_consen 9 MLIWFLFIFIF--QRIQMWRWSRDIEGKLSELEQYRNEARKKVIEYLK 54 (355)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 3322 144555666666665555555555554443
No 115
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.03 E-value=2.2e+02 Score=17.25 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhHHHH
Q psy17282 6 ISPGFVALFTLPKVY 20 (60)
Q Consensus 6 l~i~~v~~fTvP~lY 20 (60)
+++|+++.|-+=.+.
T Consensus 6 lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444554444443333
Done!