Query psy17282
Match_columns 60
No_of_seqs 110 out of 289
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 18:03:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 78.6 2.7 9.1E-05 20.5 2.9 20 4-23 15-34 (37)
2 1oqw_A Fimbrial protein; type 76.4 6.8 0.00023 22.9 5.0 17 2-18 7-23 (144)
3 2hi2_A Fimbrial protein; type 69.9 5.7 0.0002 23.4 3.6 18 2-19 7-24 (158)
4 3sok_A Fimbrial protein; pilus 67.1 17 0.00057 21.5 5.3 18 2-19 7-24 (151)
5 3arc_Z Photosystem II reaction 65.8 6.1 0.00021 21.2 2.8 20 3-22 10-29 (62)
6 1oeg_A Apolipoprotein E; siali 54.1 10 0.00036 17.0 2.0 22 30-51 2-23 (26)
7 2l5g_B Putative uncharacterize 32.0 51 0.0017 16.3 3.9 22 25-46 12-33 (42)
8 1oef_A Apolipoprotein E; glyco 31.3 37 0.0013 14.5 3.1 21 28-48 4-24 (26)
9 2wuj_A Septum site-determining 29.0 62 0.0021 16.4 4.1 21 24-44 22-42 (57)
10 1xi4_J LCA, clathrin light cha 26.6 69 0.0024 17.2 2.9 20 31-50 37-56 (70)
11 2w9y_A CE-FAR-7, fatty acid/re 24.7 25 0.00085 21.5 0.9 25 34-58 62-86 (140)
12 3u0c_A Invasin IPAB, 62 kDa an 23.9 1.5E+02 0.0051 19.0 4.8 38 21-58 110-153 (201)
13 1tzs_X 23-MER peptide from PEL 23.4 55 0.0019 14.5 1.7 18 2-19 4-21 (26)
14 1q90_R Cytochrome B6-F complex 23.0 83 0.0028 15.8 2.7 18 2-19 14-31 (49)
15 1tt9_A Formimidoyltransferase- 22.1 2.4E+02 0.0081 20.7 6.2 49 9-57 372-433 (541)
16 3vou_A ION transport 2 domain 20.3 1.4E+02 0.0046 17.2 5.1 31 17-47 108-138 (148)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=78.63 E-value=2.7 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhHHHHHhh
Q psy17282 4 VSISPGFVALFTLPKVYENN 23 (60)
Q Consensus 4 TLl~i~~v~~fTvP~lYeky 23 (60)
|-+|.|.++.|.+-+++..|
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 77899999999999988776
No 2
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=76.43 E-value=6.8 Score=22.90 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHhhHH
Q psy17282 2 FSVSISPGFVALFTLPK 18 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~ 18 (60)
...+.++|++.+..+|.
T Consensus 7 livi~Ii~il~~ia~p~ 23 (144)
T 1oqw_A 7 MIVVAIIGILAAIAIPQ 23 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999999995
No 3
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=69.86 E-value=5.7 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
...+.++|++.+..+|.+
T Consensus 7 ~vvi~ii~il~~~~~p~~ 24 (158)
T 2hi2_A 7 MIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999999963
No 4
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=67.14 E-value=17 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
...+.++|++.+..+|.+
T Consensus 7 lvviaIigiLaaia~p~~ 24 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAY 24 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999999963
No 5
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=65.81 E-value=6.1 Score=21.22 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhhHHHHHh
Q psy17282 3 SVSISPGFVALFTLPKVYEN 22 (60)
Q Consensus 3 lTLl~i~~v~~fTvP~lYek 22 (60)
..|+.+.+++.-++|++|-.
T Consensus 10 ~aLi~~Sf~LVVgVPV~~As 29 (62)
T 3arc_Z 10 AALVILSFVMVIGVPVAYAS 29 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHheeeeEEEC
Confidence 45778899999999999943
No 6
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=54.08 E-value=10 Score=17.01 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q psy17282 30 NLEVVQGKIAEITSKVKAAIPI 51 (60)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~Kip~ 51 (60)
+++.+++|...+.+++++....
T Consensus 2 ~~e~mr~Q~~~lveKvq~a~~~ 23 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAAVGT 23 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHcc
Confidence 4567788888888888887653
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.96 E-value=51 Score=16.29 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17282 25 ATIDANLEVVQGKIAEITSKVK 46 (60)
Q Consensus 25 ~~ID~~~~~~~~~~~~~~~~v~ 46 (60)
+.||+=+.+...++.++.++..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888877754
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=31.33 E-value=37 Score=14.53 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17282 28 DANLEVVQGKIAEITSKVKAA 48 (60)
Q Consensus 28 D~~~~~~~~~~~~~~~~v~~K 48 (60)
.-+.+.++.|...+.+++.+-
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHhh
Confidence 346788899999988888753
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=29.04 E-value=62 Score=16.35 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17282 24 KATIDANLEVVQGKIAEITSK 44 (60)
Q Consensus 24 q~~ID~~~~~~~~~~~~~~~~ 44 (60)
+++||.++..+-..+..+...
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e 42 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRK 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999888776666665554
No 10
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=26.60 E-value=69 Score=17.22 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q psy17282 31 LEVVQGKIAEITSKVKAAIP 50 (60)
Q Consensus 31 ~~~~~~~~~~~~~~v~~Kip 50 (60)
...++..+++++.....++-
T Consensus 37 ~~~A~k~iddfY~~yn~k~e 56 (70)
T 1xi4_J 37 KEKAIKELDEWYARQDEQLQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444433
No 11
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=24.68 E-value=25 Score=21.49 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhh
Q psy17282 34 VQGKIAEITSKVKAAIPIGKKEEKK 58 (60)
Q Consensus 34 ~~~~~~~~~~~v~~Kip~~~~k~k~ 58 (60)
+..++.++++.+..||.+..+..|+
T Consensus 62 L~~K~~~l~~~lk~Ki~~L~Peak~ 86 (140)
T 2w9y_A 62 LGKRLATVLEGNKKRLDGLSPAAVE 86 (140)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3555666677788888877666553
No 12
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=23.89 E-value=1.5e+02 Score=18.99 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=25.9
Q ss_pred HhhHHHHHHH------HHHHHHHHHHHHHHHHhhCCCCCcchhh
Q psy17282 21 ENNKATIDAN------LEVVQGKIAEITSKVKAAIPIGKKEEKK 58 (60)
Q Consensus 21 ekyq~~ID~~------~~~~~~~~~~~~~~v~~Kip~~~~k~k~ 58 (60)
+-|+..|+.+ +..+.++++.+..++...-|+.|...|-
T Consensus 110 D~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~ 153 (201)
T 3u0c_A 110 RDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKL 153 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Confidence 3455555554 4456777888888888888988877653
No 13
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=23.45 E-value=55 Score=14.52 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|+|=+-.|.+++++.|.+
T Consensus 4 li~piAaGLLLa~sqp~l 21 (26)
T 1tzs_X 4 LLPTAAAGLLLLAAQPAM 21 (26)
T ss_pred hhhhHHHHHHHHhcChHh
Confidence 455666799999999876
No 14
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=23.00 E-value=83 Score=15.75 Aligned_cols=18 Identities=17% Similarity=-0.073 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHhhHHH
Q psy17282 2 FSVSISPGFVALFTLPKV 19 (60)
Q Consensus 2 flTLl~i~~v~~fTvP~l 19 (60)
|++++.+|.+...+.-.+
T Consensus 14 fln~l~~G~~a~~a~~~~ 31 (49)
T 1q90_R 14 IMNLILAGGAGLPITTLA 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777766665544333
No 15
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=22.09 E-value=2.4e+02 Score=20.66 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=32.6
Q ss_pred HHHHHHhhHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHh------------hCCCCCcchh
Q psy17282 9 GFVALFTLPKV-YENNKATIDANLEVVQGKIAEITSKVKA------------AIPIGKKEEK 57 (60)
Q Consensus 9 ~~v~~fTvP~l-Yekyq~~ID~~~~~~~~~~~~~~~~v~~------------Kip~~~~k~k 57 (60)
.-|+-+|+-+= |+.++++++..++.+...-+++...+.+ |+|..+..+|
T Consensus 372 sMVanLTiGKkkY~~~e~~m~~i~~~~~~l~~~Ll~LiDeDaeAF~~vm~AykLPK~TeEEK 433 (541)
T 1tt9_A 372 SMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACLGAIKLPKNTPEER 433 (541)
T ss_pred HHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 34555666544 8999999999888776655555555432 8888765444
No 16
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=20.25 E-value=1.4e+02 Score=17.19 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17282 17 PKVYENNKATIDANLEVVQGKIAEITSKVKA 47 (60)
Q Consensus 17 P~lYekyq~~ID~~~~~~~~~~~~~~~~v~~ 47 (60)
..+.++.+.+.|..-....++.+++.+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 108 PSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777778888877777777777776664
Done!