RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17282
         (60 letters)



>gnl|CDD|217046 pfam02453, Reticulon, Reticulon.  Reticulon, also know as
           neuroendocrine-specific protein (NSP), is a protein of
           unknown function which associates with the endoplasmic
           reticulum. This family represents the C-terminal domain
           of the three reticulon isoforms and their homologues.
          Length = 164

 Score = 39.9 bits (94), Expect = 8e-06
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 9   GFVALFTLPKVYENNKATIDANLEVVQGKIAE 40
           G +  FT+P +YE  +  IDA +E  + K+ +
Sbjct: 133 GVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164


>gnl|CDD|131098 TIGR02043, ZntR, Zn(II)-responsive transcriptional regulator.  This
           model represents the zinc and cadmium (II) responsive
           transcriptional activator of the gamma proteobacterial
           zinc efflux system. This protein is a member of the MerR
           family of transcriptional activators (pfam00376) and
           contains a distinctive pattern of cysteine residues in
           its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a
           conserved and critical cysteine at the N-terminal end of
           the dimerization helix [Regulatory functions, DNA
           interactions].
          Length = 131

 Score = 27.1 bits (60), Expect = 0.36
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 24  KATIDANLEVVQGKIAEIT 42
           KA +DA LE+V  KI E+T
Sbjct: 83  KAIVDAKLELVDEKINELT 101


>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
           NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
           important enzyme of the intermediary metabolism, as it
           controls the carbon flux within the citric acid cycle
           and supplies the cell with 2-oxoglutarate EC:1.1.1.42
           and NADPH for biosynthetic purposes.
          Length = 735

 Score = 26.7 bits (59), Expect = 0.57
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 16  LPKVYENNKATIDANLEVVQGKIAEI 41
           L K    ++A I A L  VQGK  +I
Sbjct: 683 LAKALTEHEAAIVAELNAVQGKPVDI 708


>gnl|CDD|225394 COG2838, Icd, Monomeric isocitrate dehydrogenase [Energy production
           and conversion].
          Length = 744

 Score = 26.7 bits (59), Expect = 0.66
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 16  LPKVYENNKATIDANLEVVQGKIAEI 41
           L K    N+A I A L  VQGK  +I
Sbjct: 689 LAKALTENEAKIVAELNAVQGKPVDI 714


>gnl|CDD|217625 pfam03580, Herpes_UL14, Herpesvirus UL14-like protein.  This is a
          family of Herpesvirus proteins including UL14. UL14
          protein is a minor component of the virion tegument and
          is expressed late in infection. UL14 protein can
          influence the intracellular localisation patterns of a
          number of proteins belonging to the capsid or the DNA
          encapsidation machinery.
          Length = 149

 Score = 26.2 bits (58), Expect = 0.85
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 8  PGFVALFTLPKVYE---NNKATIDANLEVVQGKIAEITSKVKA 47
          P FV  FT  K        +   +A LE V+ K   I ++V+ 
Sbjct: 35 PAFVHAFTSAKEAHADLKAQLRSNARLESVRQKARRIQARVEE 77


>gnl|CDD|165458 PHA03188, PHA03188, UL14 tegument protein; Provisional.
          Length = 199

 Score = 26.2 bits (57), Expect = 1.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 8  PGFVALFTLPK---VYENNKATIDANLEVVQGKIAEITSKVKAAIPIGK 53
          P FV  FT  K      NN     A +  V+ KIA+I  KV+    I K
Sbjct: 45 PAFVHAFTAAKDACADLNNNIRSAARIAAVEQKIADIQEKVEEQTSIQK 93


>gnl|CDD|181924 PRK09514, zntR, zinc-responsive transcriptional regulator;
           Provisional.
          Length = 140

 Score = 24.9 bits (55), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 24  KATIDANLEVVQGKIAEIT 42
           K  +D  L  V+ KIAE+ 
Sbjct: 83  KGIVDEKLAEVEAKIAELQ 101


>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
          Length = 451

 Score = 25.0 bits (55), Expect = 2.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 26 TIDANLEVVQGKIAEITSKVKAA 48
             A++ +  GKIAEI  ++ + 
Sbjct: 18 VYRADIGIKNGKIAEIAPEISSP 40


>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
           [Transport and binding proteins, Other].
          Length = 711

 Score = 24.7 bits (54), Expect = 3.1
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 1   MFSVSISPGFVALFTLPKVYENNKA---TIDANLEVVQGKIAEIT 42
           M  +S     V L  LP V+   K          E +Q  +A+  
Sbjct: 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKAN 340


>gnl|CDD|226908 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic
           component/surface adhesin [Inorganic ion transport and
           metabolism].
          Length = 318

 Score = 24.7 bits (54), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 15  TLPKVYENNKATIDANLEVVQGKIAEITSKVKA 47
            L ++   N A  DANL+  + ++A +  KV  
Sbjct: 170 KLAELDPQNAAKYDANLKDFEAQLAALDKKVGE 202


>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
           shown to function as initial receptors in the ABC uptake
           of Zn2+.  They belong to the TroA superfamily of
           periplasmic metal binding proteins that share a distinct
           fold and ligand binding mechanism.  They are comprised
           of two globular subdomains connected by a single helix
           and bind their specific ligands in the cleft between
           these domains.  A typical TroA protein is comprised of
           two globular subdomains connected by a single helix and
           can bind the metal ion in the cleft between these
           domains. In addition, these proteins sometimes have a
           low complexity region containing a metal-binding
           histidine-rich motif (repetitive HDH sequence).
          Length = 286

 Score = 24.3 bits (53), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 15  TLPKVYENNKATIDANLEVVQGKIAEITSKVKA 47
            L  +  +N AT  ANLE    ++AE+ + +K 
Sbjct: 140 KLSALDPDNAATYAANLEAFNARLAELDATIKE 172


>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed.
          Length = 337

 Score = 23.7 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 14  FTLPKVYENNKATIDANLEVVQGKIAEI 41
            TLPK  E  KA       + +GKI ++
Sbjct: 114 ITLPKKDEKKKAFEKLLKLLEEGKIVDV 141


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,858,263
Number of extensions: 193803
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 16
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)