RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17282
         (60 letters)



>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
           transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
           3kso_A 3kss_A
          Length = 1054

 Score = 23.7 bits (52), Expect = 4.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 2   FSVSISPGFVALF 14
            SV+   GF+AL 
Sbjct: 929 LSVATGTGFIALA 941


>1pq4_A Periplasmic binding protein component of AN ABC T uptake
           transporter; ZNUA, loop, metal-binding, metal binding
           protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
           2ov3_A 2ov1_A
          Length = 291

 Score = 23.5 bits (51), Expect = 4.6
 Identities = 5/35 (14%), Positives = 16/35 (45%)

Query: 15  TLPKVYENNKATIDANLEVVQGKIAEITSKVKAAI 49
            L ++  +N+   +ANL     ++  +  ++   +
Sbjct: 151 ELAELDPDNRDQYEANLAAFLAELERLNQELGQIL 185


>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
           taurus} PDB: 3a7u_A
          Length = 347

 Score = 23.7 bits (51), Expect = 4.7
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 7   SPGFVALFTLPKVYENNKATIDANLEVVQGKIAEIT 42
           +P F    +   ++E +   I   ++V  G+I    
Sbjct: 250 TPKFSVDTSFTVLHEQSHVEIKVFIDVKNGRIEVCN 285


>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
          protein structure initiative, MID center for structural
          genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
          gingivalis}
          Length = 452

 Score = 22.9 bits (50), Expect = 8.0
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 22 NNKATIDANLEVVQGKIAEITSKVKAAIPIGKKEE 56
          N   T   ++ +    I+ I      A      +E
Sbjct: 15 NEGKTFPGSVMIDGAFISRIIEGELPADDNLSADE 49


>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
           two (beta/ALFA)4 domains, metal transport; 1.70A
           {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
           2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
          Length = 284

 Score = 22.7 bits (49), Expect = 8.8
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 15  TLPKVYENNKATIDANLEVVQGKIAEITSKVKAAI 49
            L ++   ++A +DANL+  + ++A   ++V   +
Sbjct: 135 KLVELMPQSRAKLDANLKDFEAQLASTETQVGNEL 169


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 823,918
Number of extensions: 36122
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 6
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)