BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17283
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 301 bits (770), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 141/208 (67%), Positives = 168/208 (80%)
Query: 376 IDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKF 435
+D +AWD+TV+TCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN L V A F
Sbjct: 360 MDWDKAWDVTVRTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAF 419
Query: 436 PNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEK 495
P D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA IHSEI+K IF+DFYEL P K
Sbjct: 420 PGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHK 479
Query: 496 FQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVK 555
FQNKTNGITPRRWL+LCNP LA+VIAE+IGED+I L+QL +L + D AF R+V KVK
Sbjct: 480 FQNKTNGITPRRWLVLCNPGLAEVIAERIGEDFISDLDQLRKLLSFVDDEAFIRDVAKVK 539
Query: 556 QENKMKLAQYIEKEYHIKVNAASIFDMQ 583
QENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 540 QENKLKFAAYLEREYKVHINPNSLFDIQ 567
Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 250 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 309
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMR+LVD+E ++WDKAWD+T
Sbjct: 310 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVT 369
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
V+TCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 370 VRTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 408
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 143/214 (66%), Gaps = 40/214 (18%)
Query: 198 HIN---FLHLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYT 254
HIN +QVKRIHEYKRQLLN LH+ITLYNRIK+ P F PRT+MIGGKAAPGY+
Sbjct: 557 HINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKREPNKFFVPRTVMIGGKAAPGYHM 616
Query: 255 AKKIIKLICSVARVVNNDPDVGDKLKVVFL------------------------------ 284
AK II+L+ ++ VVN+DP VGD+L+V+FL
Sbjct: 617 AKMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASG 676
Query: 285 -------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNAN 337
LNGALTIGT+DGANVEMAEE G +N FIFGM V+ V++L ++GY+A YY+
Sbjct: 677 TGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYDRI 736
Query: 338 PELKLVVDQITNGFFSPENPDEFKDLSDILLKWD 371
PEL+ V++Q+++GFFSP+ PD FKD+ ++L+ D
Sbjct: 737 PELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHHD 770
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGN 188
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 532 LEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQTKWLEM 591
+EQL+ K P +++ + + + + + E +IK +N +W M
Sbjct: 743 IEQLSSGFFSPKQPDLFKDIVNMLMHHD-RFKVFADYEDYIKCQEKVSALYKNPREWTRM 801
Query: 592 AIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHES 631
I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E+
Sbjct: 802 VIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDEA 841
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 336 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 387
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 388 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 447
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 448 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 507
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 508 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 238 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 297
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 298 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 357
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 358 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 396
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 449 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 509 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 563
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 564 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDG 683
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 684 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 743
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 744 PDLFKDIVNMLMHHD 758
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 176
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPA 627
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPA
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 825
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 336 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 387
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 388 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 447
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 448 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 507
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 508 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 238 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 297
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 298 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 357
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 358 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 396
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 449 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 509 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 563
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 564 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 683
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 684 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 743
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 744 PDLFKDIVNMLMHHD 758
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 176
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPA 627
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPA
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 825
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 336 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 387
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 388 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 447
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 448 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 507
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 508 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555
Score = 251 bits (642), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 238 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 297
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK + FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 298 RRFKSSKFGCRDPRVTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 357
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 358 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 396
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 449 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 509 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 563
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 564 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 683
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 684 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 743
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 744 PDLFKDIVNMLMHHD 758
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 176
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPA 627
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPA
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 825
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 336 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 387
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 388 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 447
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 448 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 507
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 508 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 238 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 297
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 298 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 357
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 358 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 396
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 449 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 509 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 563
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 564 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 683
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 684 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 743
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 744 PDLFKDIVNMLMHHD 758
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 176
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLP 626
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LP
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLP 824
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 346 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 397
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 398 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 457
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 458 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 517
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 518 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 565
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 248 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 307
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 308 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 367
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 368 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 406
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 459 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 518
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 519 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 573
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 574 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 633
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 634 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDG 693
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 694 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 753
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 754 PDLFKDIVNMLMHHD 768
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 139 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 186
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 791 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 838
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPR
Sbjct: 348 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPR 399
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 400 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 459
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 460 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 519
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 520 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 567
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 250 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 309
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 310 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 369
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 370 VKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEIN 408
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 461 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 520
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 521 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 575
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 576 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 635
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 636 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDG 695
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 696 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 755
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 756 PDLFKDIVNMLMHHD 770
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 188
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 793 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 840
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 174/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGK APGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKPAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 335 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 386
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 387 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 446
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 447 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 506
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 507 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 554
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 237 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 296
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 297 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 356
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 357 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 395
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 448 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 507
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 508 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 562
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 563 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 622
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 623 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 682
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 683 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 742
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 743 PDLFKDIVNMLMHHD 757
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 128 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 175
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 780 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 827
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 347 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 398
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 399 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 458
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 459 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 518
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 519 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 566
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 309 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 369 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 407
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 460 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 519
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 520 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 574
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 575 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 634
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 635 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 694
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 695 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 754
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 755 PDLFKDIVNMLMHHD 769
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 187
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHE 630
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP E
Sbjct: 792 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAPDE 839
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 175/228 (76%), Gaps = 9/228 (3%)
Query: 357 PDEFKDLSDI-LLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPR 415
P+ + L D+ L WD +AW++TVKTCAYTNHTV+PEALERWPV L+E LLPR
Sbjct: 338 PELMRVLVDLERLDWD--------KAWEVTVKTCAYTNHTVIPEALERWPVHLLETLLPR 389
Query: 416 HMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFI 475
H+QIIY IN L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA I
Sbjct: 390 HLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARI 449
Query: 476 HSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQL 535
HSEI+K IF+DFYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL
Sbjct: 450 HSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQL 509
Query: 536 AQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+L Y D AF R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 510 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 557
Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 240 PNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 299
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF++SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++T
Sbjct: 300 RRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVT 359
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
VKTCAYTNHTV+PEALERWPV L+E LLPRH+QIIY IN
Sbjct: 360 VKTCAYTNHTVIPEALERWPVHLLETLLPRHLQIIYEIN 398
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 175/315 (55%), Gaps = 59/315 (18%)
Query: 111 AEIKDKSAFDKF----PEKVAIQLNDTHPS----LAIPELMRVLVDVEGLEWDKAWDITV 162
+EI K+ F F P K + N P L P L ++ + G E+ D
Sbjct: 451 SEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 510
Query: 163 KTCAYTNHTVLPEALERWPVTLMEN------LLPRHMQIIYHIN---FLHLQVKRIHEYK 213
K +Y + + + EN L R ++ HIN +QVKRIHEYK
Sbjct: 511 KLLSYVDDEAFIRDVAK---VKQENKLKFAAYLEREYKV--HINPNSLFDVQVKRIHEYK 565
Query: 214 RQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDP 273
RQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP
Sbjct: 566 RQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 625
Query: 274 DVGDKLKVVFL-------------------------------------LNGALTIGTLDG 296
VGD+L+V+FL LNGALTIGT+DG
Sbjct: 626 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 685
Query: 297 ANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPEN 356
ANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+
Sbjct: 686 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 745
Query: 357 PDEFKDLSDILLKWD 371
PD FKD+ ++L+ D
Sbjct: 746 PDLFKDIVNMLMHHD 760
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 131 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 178
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAP 628
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LPAP
Sbjct: 783 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPAP 828
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 363 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 422
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 423 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 482
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 483 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 542
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 543 LKFSQFLETEYKVKINPSSMFDVQ 566
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 309 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 369 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 411
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 565 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 624
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 625 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 684
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 685 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 744
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 745 IDNGFFSPKQPDLFKDIINMLFYHD 769
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 187
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 793 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 843
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 363 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 422
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 423 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 482
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 483 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 542
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 543 LKFSQFLETEYKVKINPSSMFDVQ 566
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 309 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 369 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 411
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 565 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 624
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 625 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 684
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 685 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 744
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 745 IDNGFFSPKQPDLFKDIINMLFYHD 769
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 187
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 793 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 843
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 364 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 423
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 424 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 483
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 484 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 543
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 544 LKFSQFLETEYKVKINPSSMFDVQ 567
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 250 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 309
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 310 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 369
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 370 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 412
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 566 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 625
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 626 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 685
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 686 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 745
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 746 IDNGFFSPKQPDLFKDIINMLFYHD 770
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 188
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 794 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 844
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 365 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 424
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 425 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 484
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 485 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 544
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 545 LKFSQFLETEYKVKINPSSMFDVQ 568
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 251 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 310
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 311 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 370
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 371 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 413
Score = 235 bits (599), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 567 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 626
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 627 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 686
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 687 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 746
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 747 IDNGFFSPKQPDLFKDIINMLFYHD 771
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 142 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 189
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 795 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 845
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 364 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 423
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 424 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 483
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 484 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 543
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 544 LKFSQFLETEYKVKINPSSMFDVQ 567
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 250 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 309
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 310 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 369
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 370 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 412
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 566 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 625
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 626 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 685
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 686 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 745
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 746 IDNGFFSPKQPDLFKDIINMLFYHD 770
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 188
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 794 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 844
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 366 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 425
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 426 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 485
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 486 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 545
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 546 LKFSQFLETEYKVKINPSSMFDVQ 569
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 252 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 311
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 312 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 371
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 372 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 414
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 568 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 627
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 628 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 687
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 688 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 747
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 748 IDNGFFSPKQPDLFKDIINMLFYHD 772
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 143 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 190
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 796 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 846
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 363 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 422
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 423 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 482
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 483 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 542
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 543 LKFSQFLETEYKVKINPSSMFDVQ 566
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 249 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 308
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 309 RRFKASKFGSTRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 368
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 369 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 411
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 565 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 624
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 625 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 684
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 685 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 744
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 745 IDNGFFSPKQPDLFKDIINMLFYHD 769
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 187
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLPAPHESADI 634
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS K+ +ES +
Sbjct: 793 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKV 843
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 169/204 (82%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW++T KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL ++A FP D+
Sbjct: 341 KAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDV 400
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
DR+RRMSLIEE+G KR+NMAHL IVGSHAVNGVA IHS+I+K +F+DF EL P+KFQNK
Sbjct: 401 DRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNK 460
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWLLLCNP LA++IAEKIGED++ L QL +L + D F RE+ KVKQENK
Sbjct: 461 TNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENK 520
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+K +Q++E EY +K+N +S+FD+Q
Sbjct: 521 LKFSQFLETEYKVKINPSSMFDVQ 544
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 135/163 (82%), Gaps = 1/163 (0%)
Query: 43 PDDW-LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII 101
P+D+ LR N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDII
Sbjct: 227 PNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDII 286
Query: 102 RRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161
RRF+ SK + + FD FP++VAIQLNDTHP+LAIPELMR+ VD+E L W KAW++T
Sbjct: 287 RRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELT 346
Query: 162 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL 204
KT AYTNHTVLPEALERWPV L+E LLPRH++IIY IN HL
Sbjct: 347 QKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHL 389
Score = 235 bits (599), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 140/205 (68%), Gaps = 37/205 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+QVKRIHEYKRQLLN LH+IT+YNRIKK+PK F PRT++IGGKAAPGY+ AK IIKLI
Sbjct: 543 VQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLIT 602
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
SVA VVNNDP VG KLKV+FL LN
Sbjct: 603 SVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLN 662
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALTIGT+DGANVEMAEE G +N+FIFGM +D V L KKGY+A YY A PELKLV+DQ
Sbjct: 663 GALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQ 722
Query: 347 ITNGFFSPENPDEFKDLSDILLKWD 371
I NGFFSP+ PD FKD+ ++L D
Sbjct: 723 IDNGFFSPKQPDLFKDIINMLFYHD 747
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACFLDSMATLGL+AYGYGIRYEYGIF QKI++G Q EE DDWLRY N
Sbjct: 118 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGN 165
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 28/38 (73%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPS 621
N W M + NIA+SGKFSSDRTI EYA+ IW VEPS
Sbjct: 771 NPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPS 808
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 141/199 (70%), Gaps = 5/199 (2%)
Query: 376 IDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKF 435
+D +AWDI KT AYTNHTV+ EALE+WP L +LLPRH++IIY IN+ L++V KF
Sbjct: 387 LDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKF 446
Query: 436 PNDLDRMRRMSLIEEDGDKR-VNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYEL-TP 493
P D+D + R+S+IEE+ +R + MA L+IVGSH VNGV +HSE+IK IF+DF + P
Sbjct: 447 PKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGP 506
Query: 494 EKFQNKTNGITPRRWLLLCNPSLADVIAEKIG---EDWIIHLEQLAQLKQYAKDPAFQRE 550
KF N TNGITPRRWL NPSLA +I+E + E++++ + +L QL++Y +D F ++
Sbjct: 507 SKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKK 566
Query: 551 VFKVKQENKMKLAQYIEKE 569
+VK NK++L I+KE
Sbjct: 567 WNQVKLNNKIRLVDLIKKE 585
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 117/159 (73%), Gaps = 8/159 (5%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L N+GDY +V + AE+I+ VLYPNDN GKELRLKQ+YF CAA+L DI+RRF+
Sbjct: 290 LNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK- 348
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
K K + +FP++VAIQLNDTHP+LAI EL RVLVD+E L+W +AWDI KT A
Sbjct: 349 -------KSKRPWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFA 401
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQ 205
YTNHTV+ EALE+WP L +LLPRH++IIY IN+ L+
Sbjct: 402 YTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLE 440
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 106/211 (50%), Gaps = 48/211 (22%)
Query: 201 FLHLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFT--------PRTIMI-GGKAAPG 251
+QVKRIHEYKRQ LN II Y +K K + PR + I GGK+APG
Sbjct: 601 LFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPG 660
Query: 252 YYTAKKIIKLICSVARVVNNDPDVGDKLKVV----------------------------- 282
YY AK IIKLI VA +VNND + LKVV
Sbjct: 661 YYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTE 720
Query: 283 --------FLLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYY 334
F++NG L IGT+DGANVE+ E+G DN+F+FG + VEEL+ P
Sbjct: 721 ASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQ-- 778
Query: 335 NANPELKLVVDQITNGFFSPENPDEFKDLSD 365
+ L V+ I +G FSPENP+EFK L D
Sbjct: 779 DLPSSLDSVLSYIESGQFSPENPNEFKPLVD 809
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 4 AACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
AACF+DSMAT G+ A+GYG+RYEYGIFAQKI +G Q E PD WL N
Sbjct: 170 AACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGN 217
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 557 ENKMKLAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
E+ + + +++E+H +++WL+ +++++A+ G FSSDR I EY+ IW
Sbjct: 825 ESYLATHELVDQEFH-----------NQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIW 873
Query: 617 GVEP 620
VEP
Sbjct: 874 NVEP 877
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 142/203 (69%), Gaps = 3/203 (1%)
Query: 381 AWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLD 440
AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN V +P D
Sbjct: 332 AWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK 391
Query: 441 RMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500
+++++ DK+V+MA+L +VG AVNGVA +HS+++ D+F ++++L P KF N T
Sbjct: 392 VWAKLAVVH---DKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 448
Query: 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKM 560
NGITPRRW+ CNP+LA ++ + + ++W L+QL L+++A D F+++ ++KQ NK+
Sbjct: 449 NGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKV 508
Query: 561 KLAQYIEKEYHIKVNAASIFDMQ 583
+LA++++ I++N +IFD+Q
Sbjct: 509 RLAEFVKVRTGIEINPQAIFDIQ 531
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 119/180 (66%), Gaps = 13/180 (7%)
Query: 23 IRYEYGIFAQKIKNGEQTE-EPDDWLRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGG 81
+ Y G+ AQ ++ + T P D ++ NDGD+++A AE +++VLYPNDN F G
Sbjct: 207 VGYRNGV-AQPLRLWQATHAHPFDLTKF-NDGDFLRAEQQGINAEKLTKVLYPNDNAFEG 264
Query: 82 KELRLKQEYFMCAATLQDIIRRFR-TSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIP 140
K+LRL Q+YF CA ++ DI+RR + + E+ D IQLNDTHP++AIP
Sbjct: 265 KKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEV---------IQLNDTHPTIAIP 315
Query: 141 ELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
EL+RVL+D + WD AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN
Sbjct: 316 ELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEIN 375
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 114/197 (57%), Gaps = 37/197 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+Q+KR+HEYKRQ LN LHI+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 530 IQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAIN 589
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NNDP VGDKLKVVFL LN
Sbjct: 590 KVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALN 649
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALT+GTLDGANVE+AE++G +NIFIFG TV+QV+ + KGYD + + L V+ +
Sbjct: 650 GALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKE 709
Query: 347 ITNGFFSPENPDEFKDL 363
+ +G +S + F +
Sbjct: 710 LESGKYSDGDKHAFDQM 726
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLR 48
RLAACFLDSMAT+G SA GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 117 RLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 562 LAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
A Y+E + + V ++Q W AI+N A G FSSDR+I +Y IW
Sbjct: 744 FAAYVEAQKQVDVL------YRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 792
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 141/203 (69%), Gaps = 3/203 (1%)
Query: 381 AWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLD 440
AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN V +P D
Sbjct: 332 AWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK 391
Query: 441 RMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500
+++++ DK+V+MA+L +VG AVNGVA +HS+++ D+F ++++L P KF N T
Sbjct: 392 VWAKLAVVH---DKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 448
Query: 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKM 560
NGITPRRW+ CNP+LA ++ + + ++W L+QL L+++A D F+ + ++KQ NK+
Sbjct: 449 NGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRDQYREIKQANKV 508
Query: 561 KLAQYIEKEYHIKVNAASIFDMQ 583
+LA++++ I++N +IFD+Q
Sbjct: 509 RLAEFVKVRTGIEINPQAIFDIQ 531
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 13/180 (7%)
Query: 23 IRYEYGIFAQKIKNGEQTE-EPDDWLRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGG 81
+ Y G+ AQ ++ + T P D ++ NDGD+++A AE +++VLYPNDN+ G
Sbjct: 207 VGYRNGV-AQPLRLWQATHAHPFDLTKF-NDGDFLRAEQQGINAEKLTKVLYPNDNHTAG 264
Query: 82 KELRLKQEYFMCAATLQDIIRRFR-TSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIP 140
K+LRL Q+YF CA ++ DI+RR + + E+ D IQLNDTHP++AIP
Sbjct: 265 KKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEV---------IQLNDTHPTIAIP 315
Query: 141 ELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
EL+RVL+D + WD AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN
Sbjct: 316 ELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEIN 375
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 114/197 (57%), Gaps = 37/197 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+Q+KR+HEYKRQ LN LHI+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 530 IQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAIN 589
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NNDP VGDKLKVVFL LN
Sbjct: 590 KVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALN 649
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALT+GTLDGANVE+AE++G +NIFIFG TV+QV+ + KGYD + + L V+ +
Sbjct: 650 GALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKE 709
Query: 347 ITNGFFSPENPDEFKDL 363
+ +G +S + F +
Sbjct: 710 LESGKYSDGDKHAFDQM 726
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLR 48
RLAACFLDSMAT+G SA GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 117 RLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 562 LAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
A Y+E + + V ++Q W AI+N A G FSSDR+I +Y IW
Sbjct: 744 FAAYVEAQKQVDVL------YRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 792
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 140/204 (68%), Gaps = 5/204 (2%)
Query: 381 AWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLD 440
AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN V +P D
Sbjct: 333 AWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK 392
Query: 441 RMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500
+++++ DK+V+MA+L +VG AVNGVA +HS+++ D+F ++++L P KF N T
Sbjct: 393 VWAKLAVVH---DKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 449
Query: 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKV-KQENK 559
NGITPRRW+ CNP+LA ++ + + ++W L+QL L + A D F R++++V KQ NK
Sbjct: 450 NGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLVKLADDAKF-RDLYRVIKQANK 508
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
++LA++++ I +N +IFD+Q
Sbjct: 509 VRLAEFVKVRTGIDINPQAIFDIQ 532
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 13/180 (7%)
Query: 23 IRYEYGIFAQKIKNGEQTE-EPDDWLRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGG 81
+ Y G+ AQ ++ + T P D ++ NDGD+++A AE +++VLYPNDN+ G
Sbjct: 208 VGYRNGV-AQPLRLWQATHAHPFDLTKF-NDGDFLRAEQQGINAEKLTKVLYPNDNHTAG 265
Query: 82 KELRLKQEYFMCAATLQDIIRRFR-TSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIP 140
K+LRL Q+YF CA ++ DI+RR + + E+ D IQLNDTHP++AIP
Sbjct: 266 KKLRLMQQYFQCACSVADILRRHHLAGRELHELADYEV---------IQLNDTHPTIAIP 316
Query: 141 ELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
EL+RVL+D + WD AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN
Sbjct: 317 ELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEIN 376
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 112/197 (56%), Gaps = 37/197 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+Q+KR+HEYKRQ LN L I+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 531 IQIKRLHEYKRQHLNLLRILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAIN 590
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NNDP VGDKLKVVFL LN
Sbjct: 591 KVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALN 650
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALT+GTLDGANVE+AE++G +NIFIFG TV QV+ + KGYD + + L V+ +
Sbjct: 651 GALTVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILAKGYDPVKWRKKDKVLDAVLKE 710
Query: 347 ITNGFFSPENPDEFKDL 363
+ +G +S + F +
Sbjct: 711 LESGKYSDGDKHAFDQM 727
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLR 48
RLAACFLDSMAT+G SA GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 118 RLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 164
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 562 LAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
A Y+E + + V ++Q W AI+N A G FSSDR+I +Y IW
Sbjct: 745 FAAYVEAQKQVDVL------YRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 793
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 140/204 (68%), Gaps = 5/204 (2%)
Query: 381 AWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLD 440
AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN V +P D
Sbjct: 332 AWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK 391
Query: 441 RMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500
+++++ DK+V+MA+L +VG AVNGVA +HS+++ D+F ++++L P KF N T
Sbjct: 392 VWAKLAVVH---DKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 448
Query: 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKV-KQENK 559
NGITPRRW+ CNP+LA ++ + + ++W L+QL L + A D F R++++V KQ NK
Sbjct: 449 NGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLVKLADDAKF-RDLYRVIKQANK 507
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
++LA++++ I +N +IFD+Q
Sbjct: 508 VRLAEFVKVRTGIDINPQAIFDIQ 531
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 13/180 (7%)
Query: 23 IRYEYGIFAQKIKNGEQTE-EPDDWLRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGG 81
+ Y G+ AQ ++ + T P D ++ NDGD+++A AE +++VLYPNDN+ G
Sbjct: 207 VGYRNGV-AQPLRLWQATHAHPFDLTKF-NDGDFLRAEQQGINAEKLTKVLYPNDNHTAG 264
Query: 82 KELRLKQEYFMCAATLQDIIRRFR-TSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIP 140
K+LRL Q+YF CA ++ DI+RR + + E+ D IQLNDTHP++AIP
Sbjct: 265 KKLRLMQQYFQCACSVADILRRHHLAGRELHELADYEV---------IQLNDTHPTIAIP 315
Query: 141 ELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
EL+RVL+D + WD AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN
Sbjct: 316 ELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEIN 375
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 112/197 (56%), Gaps = 37/197 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+Q+KR+HEYKRQ LN L I+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 530 IQIKRLHEYKRQHLNLLRILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAIN 589
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NNDP VGDKLKVVFL LN
Sbjct: 590 KVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALN 649
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALT+GTLDGANVE+AE++G +NIFIFG TV QV+ + KGYD + + L V+ +
Sbjct: 650 GALTVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILAKGYDPVKWRKKDKVLDAVLKE 709
Query: 347 ITNGFFSPENPDEFKDL 363
+ +G +S + F +
Sbjct: 710 LESGKYSDGDKHAFDQM 726
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLR 48
RLAACFLDSMAT+G SA GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 117 RLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 562 LAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
A Y+E + + V ++Q W AI+N A G FSSDR+I +Y IW
Sbjct: 744 FAAYVEAQKQVDVL------YRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 792
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 128/207 (61%), Gaps = 9/207 (4%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
++W I KT AYTNHTVL EALE+W + + L R +II I+ + L + + L
Sbjct: 321 ESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEID---RRFRLERAADGL 377
Query: 440 DR--MRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQ 497
D + RM+ I+ V+MA ++ ++++NGVA +H+EIIK + D+Y L PEKF
Sbjct: 378 DEETINRMAPIQH---GTVHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFN 434
Query: 498 NKTNGITPRRWLLLCNPSLADVIAEKIG-EDWIIHLEQLAQLKQYAKDPAFQREVFKVKQ 556
NKTNG+TPRRWL + NP L+D++ G +DW+ L++L +L+ YA D + E+ +K
Sbjct: 435 NKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKA 494
Query: 557 ENKMKLAQYIEKEYHIKVNAASIFDMQ 583
NK A++I + I+++ SIFD+Q
Sbjct: 495 ANKQDFAEWILERQGIEIDPESIFDVQ 521
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 38/206 (18%)
Query: 200 NFLHLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKII 259
+ +Q+KR+HEYKRQL+NAL+++ LY RIK++ RT++ G KAAPGY AK II
Sbjct: 516 SIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAII 575
Query: 260 KLICSVARVVNNDPDVGDKLKVV------------------------------------- 282
KLI S+A +VNNDP+V LKVV
Sbjct: 576 KLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMK 635
Query: 283 FLLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKL 342
F++NGALT+GT+DGANVE+ + +G +N +IFG V+++ L++ Y Y P LK
Sbjct: 636 FMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRES-YKPYELYETVPGLKR 694
Query: 343 VVDQITNGFFSPENPDEFKDLSDILL 368
+D + NG + N F DL L+
Sbjct: 695 ALDALDNGTLNDNNSGLFYDLKHSLI 720
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 116/203 (57%), Gaps = 18/203 (8%)
Query: 2 RLAACFLDSMATLG----LSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVNDGDYIQ 57
+L CF D M T + GYG + + ++ E EE D N +
Sbjct: 177 QLVVCF-DDMKTRAIPYDMPITGYGT---HNVGTLRLWKAEPWEEFD--YDAFNAQRFTD 230
Query: 58 AVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKS 117
A+++R +I RVLYPND + GK+LR++Q+YF +A+LQ +I+ +A KD S
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQ-----DHLAHHKDLS 285
Query: 118 AFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEAL 177
F +F ++QLNDTHP LAIPELMR+L+D + W+++W I KT AYTNHTVL EAL
Sbjct: 286 NFAEFH---SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEAL 342
Query: 178 ERWPVTLMENLLPRHMQIIYHIN 200
E+W + + L R +II I+
Sbjct: 343 EQWDEQIFQQLFWRVWEIIAEID 365
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDW 46
RLAACFLDS T GYG+ Y +G+F Q G Q E+PD W
Sbjct: 118 RLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPW 162
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 588 WLEMAIMNIASSGKFSSDRTITEYAREIWGVEPS 621
W MA +NI SG+FSSDRTI +YA EIW +EP+
Sbjct: 758 WARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
>pdb|1O8N|A Chain A, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8N|B Chain B, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8N|C Chain C, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
Length = 167
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + +D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEMDLI----LTLGGAGFTPRDVTPEATKK 95
>pdb|1UUY|A Chain A, Structure Of A Molybdopterin-Bound Cnx1g Domain Links
Molybdenum And Copper Metabolism
Length = 167
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + +D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEMDLI----LTLGGTGFTPRDVTPEATKK 95
>pdb|1UUX|A Chain A, Structure Of A Molybdopterin-Bound Cnx1g Domain Links
Molybdenum And Copper Metabolism
Length = 163
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + +D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEMDLI----LTLGGTGFTPRDVTPEATKK 95
>pdb|1O8Q|A Chain A, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|B Chain B, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|C Chain C, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|D Chain D, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|E Chain E, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|F Chain F, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|G Chain G, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|H Chain H, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
Length = 167
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + +D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEMDLI----LTLGGTGFTPRDVTPEATKK 95
>pdb|1QQH|A Chain A, 2.1 A Crystal Structure Of The Human Papillomavirus Type
18 E2 Activation Domain
Length = 144
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 589 LEMAIMNIASSGKFSSDRTITEYAREIWGVEPSY 622
L+MA+ +A S + D T+ + E+W EP++
Sbjct: 10 LQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTH 43
>pdb|1EAV|A Chain A, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|B Chain B, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|C Chain C, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|D Chain D, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|E Chain E, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|F Chain F, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|G Chain G, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|H Chain H, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
Length = 162
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEXDLI----LTLGGTGFTPRDVTPEATKK 95
>pdb|1TUE|B Chain B, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|E Chain E, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|G Chain G, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|J Chain J, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|L Chain L, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|Q Chain Q, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
Length = 218
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 589 LEMAIMNIASSGKFSSDRTITEYAREIWGVEPSY 622
L+MA+ +A S + D T+ + E+W EP++
Sbjct: 82 LQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTH 115
>pdb|1O8O|A Chain A, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8O|B Chain B, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8O|C Chain C, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
Length = 167
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 PDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALER 403
PDE + + DIL KW + +D + +T+ +T V PEA ++
Sbjct: 53 PDEVERIKDILQKWSDVDEMDLI----LTLGGDGFTPRDVTPEATKK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,928,756
Number of Sequences: 62578
Number of extensions: 877942
Number of successful extensions: 2370
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 181
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)