Query psy17283
Match_columns 635
No_of_seqs 300 out of 1902
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099|consensus 100.0 4E-134 9E-139 1077.7 27.3 373 2-374 139-774 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 1E-123 3E-128 1057.8 35.6 367 2-376 108-741 (794)
3 PF00343 Phosphorylase: Carboh 100.0 4E-124 9E-129 1052.1 29.0 364 2-373 28-655 (713)
4 PRK14986 glycogen phosphorylas 100.0 7E-123 1E-127 1054.0 36.8 367 2-376 128-757 (815)
5 PRK14985 maltodextrin phosphor 100.0 6E-123 1E-127 1050.6 35.8 367 2-376 117-743 (798)
6 cd04300 GT1_Glycogen_Phosphory 100.0 6E-122 1E-126 1048.1 36.5 367 2-376 111-744 (797)
7 COG0058 GlgP Glucan phosphoryl 100.0 1E-102 3E-107 879.2 28.8 342 2-368 119-684 (750)
8 cd04299 GT1_Glycogen_Phosphory 100.0 1.9E-69 4.2E-74 622.3 18.3 323 2-366 110-665 (778)
9 TIGR02094 more_P_ylases alpha- 100.0 9.5E-65 2.1E-69 573.9 21.1 318 2-588 23-399 (601)
10 KOG2099|consensus 100.0 6.4E-65 1.4E-69 545.4 15.9 291 286-585 271-570 (843)
11 TIGR02093 P_ylase glycogen/sta 100.0 5.4E-62 1.2E-66 554.3 18.5 263 311-586 271-535 (794)
12 cd04300 GT1_Glycogen_Phosphory 100.0 1.4E-61 3.1E-66 552.8 18.6 273 294-585 263-537 (797)
13 PRK14986 glycogen phosphorylas 100.0 5.7E-61 1.2E-65 547.1 17.2 275 292-585 274-550 (815)
14 PRK14985 maltodextrin phosphor 100.0 7.5E-61 1.6E-65 544.2 16.7 236 341-586 302-537 (798)
15 PF00343 Phosphorylase: Carboh 100.0 1.8E-60 4E-65 536.9 13.4 276 292-585 175-451 (713)
16 COG0058 GlgP Glucan phosphoryl 100.0 1.1E-51 2.5E-56 466.2 18.4 230 343-586 266-495 (750)
17 cd04299 GT1_Glycogen_Phosphory 100.0 7E-40 1.5E-44 377.9 14.4 251 293-589 218-489 (778)
18 TIGR02094 more_P_ylases alpha- 99.9 2.2E-25 4.7E-30 253.5 11.2 221 126-369 295-579 (601)
19 cd03791 GT1_Glycogen_synthase_ 97.1 0.0081 1.8E-07 66.8 14.7 141 6-176 24-172 (476)
20 TIGR02095 glgA glycogen/starch 96.5 0.012 2.6E-07 65.7 10.0 96 205-316 296-422 (473)
21 cd03791 GT1_Glycogen_synthase_ 94.5 0.043 9.3E-07 61.0 4.9 99 386-511 158-260 (476)
22 PRK00654 glgA glycogen synthas 94.3 0.39 8.4E-06 53.9 11.9 96 205-316 287-413 (466)
23 PRK14098 glycogen synthase; Pr 94.2 0.4 8.6E-06 54.5 12.0 95 205-315 312-435 (489)
24 cd01635 Glycosyltransferase_GT 90.2 1.3 2.9E-05 42.3 8.4 156 124-313 51-229 (229)
25 PRK14098 glycogen synthase; Pr 89.9 0.47 1E-05 53.9 5.6 93 387-509 172-269 (489)
26 PRK00654 glgA glycogen synthas 89.7 0.24 5.2E-06 55.5 3.1 57 454-510 186-246 (466)
27 TIGR02095 glgA glycogen/starch 88.4 0.34 7.4E-06 54.2 3.1 95 387-509 155-253 (473)
28 PRK14099 glycogen synthase; Pr 87.4 0.94 2E-05 51.4 5.8 55 454-509 198-257 (485)
29 PLN02316 synthase/transferase 79.0 41 0.00088 42.0 15.3 100 205-315 845-982 (1036)
30 cd03805 GT1_ALG2_like This fam 71.9 24 0.00051 37.7 9.8 109 205-320 216-354 (392)
31 PLN02939 transferase, transfer 68.1 3.5 7.5E-05 50.5 2.6 97 388-509 641-740 (977)
32 TIGR03449 mycothiol_MshA UDP-N 54.7 71 0.0015 34.4 9.6 102 204-315 223-352 (405)
33 cd03788 GT1_TPS Trehalose-6-Ph 51.4 2.5E+02 0.0055 31.6 13.6 62 205-270 269-331 (460)
34 TIGR02400 trehalose_OtsA alpha 51.4 2.2E+02 0.0048 32.3 13.1 63 205-271 264-327 (456)
35 PRK15484 lipopolysaccharide 1, 48.2 70 0.0015 34.7 8.3 100 204-313 197-325 (380)
36 PLN00142 sucrose synthase 46.2 78 0.0017 38.6 8.8 105 203-316 576-717 (815)
37 cd03813 GT1_like_3 This family 46.0 2.9E+02 0.0062 31.1 13.0 101 205-315 298-426 (475)
38 PF08323 Glyco_transf_5: Starc 43.8 22 0.00048 36.6 3.4 139 5-176 23-177 (245)
39 TIGR02149 glgA_Coryne glycogen 43.2 46 0.001 35.3 5.9 101 203-316 204-331 (388)
40 TIGR02470 sucr_synth sucrose s 41.0 96 0.0021 37.8 8.5 105 203-316 553-694 (784)
41 cd03808 GT1_cap1E_like This fa 34.3 2.1E+02 0.0046 28.8 8.8 99 203-316 191-314 (359)
42 PRK15179 Vi polysaccharide bio 34.2 1.3E+02 0.0027 36.2 8.0 96 205-316 522-642 (694)
43 cd03806 GT1_ALG11_like This fa 32.3 2E+02 0.0044 31.8 8.9 42 205-249 242-283 (419)
44 KOG2941|consensus 30.8 59 0.0013 35.9 4.1 60 300-387 378-437 (444)
45 PF00534 Glycos_transf_1: Glyc 30.6 97 0.0021 28.8 5.3 98 204-316 19-143 (172)
46 cd03818 GT1_ExpC_like This fam 29.3 1.3E+02 0.0028 32.6 6.6 29 285-315 322-350 (396)
47 cd03821 GT1_Bme6_like This fam 28.5 1.8E+02 0.0038 29.6 7.2 102 203-319 206-334 (375)
48 cd03819 GT1_WavL_like This fam 28.1 2.2E+02 0.0049 29.4 8.0 99 205-315 190-314 (355)
49 cd03792 GT1_Trehalose_phosphor 27.8 2.6E+02 0.0055 29.8 8.5 100 204-314 194-322 (372)
50 TIGR03088 stp2 sugar transfera 26.5 1.8E+02 0.004 30.8 7.1 99 205-315 199-322 (374)
51 TIGR02472 sucr_P_syn_N sucrose 25.7 1.1E+02 0.0023 34.1 5.3 29 285-315 362-390 (439)
52 cd03795 GT1_like_4 This family 24.3 1.7E+02 0.0038 30.1 6.3 95 203-316 194-317 (357)
53 PRK14099 glycogen synthase; Pr 23.6 1.1E+02 0.0023 34.9 4.9 72 82-187 110-181 (485)
54 cd04946 GT1_AmsK_like This fam 22.3 2.3E+02 0.0051 31.0 7.1 29 285-315 332-360 (407)
55 PLN02949 transferase, transfer 22.1 3.4E+02 0.0073 30.8 8.4 106 203-314 271-407 (463)
56 cd05844 GT1_like_7 Glycosyltra 21.9 6.8E+02 0.015 26.0 10.3 29 285-315 292-320 (367)
57 cd04962 GT1_like_5 This family 20.8 1.1E+02 0.0023 32.1 3.9 29 285-315 292-320 (371)
58 TIGR02468 sucrsPsyn_pln sucros 20.5 2.9E+02 0.0063 34.8 7.9 101 204-315 483-621 (1050)
No 1
>KOG2099|consensus
Probab=100.00 E-value=4.2e-134 Score=1077.68 Aligned_cols=373 Identities=76% Similarity=1.221 Sum_probs=366.4
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||+|+|+|.+|||+|.||+||+.
T Consensus 139 RLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g~kWid 218 (843)
T KOG2099|consen 139 RLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDGSKWID 218 (843)
T ss_pred HHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCcceeec
Confidence 999999999999999999999999999999999999999999999987
Q ss_pred ---------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhhhhhH
Q psy17283 50 ---------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEY 90 (635)
Q Consensus 50 ---------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl~Qe~ 90 (635)
||.|+|..|+++.+.+||||++|||+|+..+||+|||||||
T Consensus 219 ~q~V~A~~YD~PvPGyk~n~vntlRLWsaka~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqy 298 (843)
T KOG2099|consen 219 TQVVLAMPYDTPVPGYKNNTVNTLRLWSAKAPNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQY 298 (843)
T ss_pred ceeEEEeccCCCCCCcccCcceeeeeeccCCCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhh
Confidence 79999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecc
Q psy17283 91 FMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNH 170 (635)
Q Consensus 91 ~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~H 170 (635)
|+|+||+|||||||+.+..|++.+++..+++||+++++|||||||++|||||||+|+|.+|++|++||+++.++|+||||
T Consensus 299 f~caAtLqDIirRFk~sk~~~r~~~~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNH 378 (843)
T KOG2099|consen 299 FLCAATLQDIIRRFKSSKFGCREPVRTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNH 378 (843)
T ss_pred hhhHHHHHHHHHHHhhcccCcccccccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCHHHHHhhhhhhHHHHHhhccccc----------------------------------------------
Q psy17283 171 TVLPEALERWPVTLMENLLPRHMQIIYHINFLHL---------------------------------------------- 204 (635)
Q Consensus 171 T~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~---------------------------------------------- 204 (635)
|++|||+|+||+++++++||||++||++||.+|+
T Consensus 379 TVlpEALErWp~~L~e~LLPRHleIIy~In~~~l~~i~~~fp~D~drlrrmsiiee~~~~k~i~MA~L~ivgsHaVNGVa 458 (843)
T KOG2099|consen 379 TVLPEALERWPVSLMEKLLPRHLEIIYEINQRFLQTVAAKFPGDVDRLRRMSIIEENSPEKRINMAHLCIVGSHAVNGVA 458 (843)
T ss_pred cccHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcHHHHhhhhhhhcCCccceeeeeeeeeecccccccHH
Confidence 9999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 459 ~iHSeilK~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ige~~i~dl~~l~~L~~~a~d~~f~~~~a~ 538 (843)
T KOG2099|consen 459 EIHSEILKQSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLADLITEKIGEEWITDLDQLTKLRKFADDEEFQREWAK 538 (843)
T ss_pred HHHHHHHHHHHHHHHHHhChHHhccccCCcCHHHHHHhcCchHHHHHHHHhhhHhhhhHHHHHHHHHhcccHHHHHHHHH
Confidence
Q ss_pred -----------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHH
Q psy17283 205 -----------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTA 255 (635)
Q Consensus 205 -----------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~a 255 (635)
|+||+||||||+||+||+++||++||++|.+.++||++||||||+|+|++|
T Consensus 539 vK~~NKlk~a~~le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mA 618 (843)
T KOG2099|consen 539 VKQENKLKLAAYLEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMA 618 (843)
T ss_pred HHHhhHHHHHHHHHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHH
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeeccccCcc
Q psy17283 256 KKIIKLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLDGAN 298 (635)
Q Consensus 256 k~iIk~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlDG~~ 298 (635)
|.|||||++||++|||||.|+++|||||+ |||+|++|||||+|
T Consensus 619 K~Iiklit~V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGAN 698 (843)
T KOG2099|consen 619 KLIIKLITAVADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGAN 698 (843)
T ss_pred HHHHHHHHHHHHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccc
Confidence 99999999999999999999999999999 99999999999999
Q ss_pred HHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcCCCCC
Q psy17283 299 VEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDSEN 374 (635)
Q Consensus 299 ~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~~~ 374 (635)
+|+++++|+||+|+||+++++|.++++.||++.++|..+|++++|+++|.+|.||+.+|..|.++++.|+.+|+|.
T Consensus 699 VEm~eE~GeeN~FiFG~~~e~V~~L~k~gy~a~~~~~~~P~l~~v~~~i~sG~Fsp~~pd~fkd~~~~l~~hD~f~ 774 (843)
T KOG2099|consen 699 VEMAEEAGEENFFIFGMRVEDVEALRKKGYNAQEYYDPLPELKQVIDQIESGFFSPKNPDEFKDIVNMLMYHDYFL 774 (843)
T ss_pred hHHHHHcCcccEEEecccHHHHHHHHhhcccccccCCCCchHHHHHHHHhcCccCCCCchHHHHHHHhhhccceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888766653
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=1.2e-123 Score=1057.83 Aligned_cols=367 Identities=68% Similarity=1.105 Sum_probs=355.2
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||||+|+|.||+|+|.||+|+..
T Consensus 108 rLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~~~~g~~~~ 187 (794)
T TIGR02093 108 RLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQPDSDRLRP 187 (794)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCceeecCCcEEEEEeCCEEeeeccCCccee
Confidence 899999999999999999999999999999999999999999999764
Q ss_pred -------------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhh
Q psy17283 50 -------------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRL 86 (635)
Q Consensus 50 -------------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl 86 (635)
||.|+|..++.....+|+||++|||+||+++||++||
T Consensus 188 ~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRL 267 (794)
T TIGR02093 188 RWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAPEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRL 267 (794)
T ss_pred EeeCceEEEEeecceeecCCCCCceEEEEEEEecCccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHHHHH
Confidence 7899999999999999999999999999999999999
Q ss_pred hhhHHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccc
Q psy17283 87 KQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166 (635)
Q Consensus 87 ~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~ 166 (635)
+|||||||||+|||||+|++.. + +++.+|++++|||||||||+++|||||+|+|++|++|++||++|+++|+
T Consensus 268 kQeyfl~~aglqdiir~~~~~~-~-------~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~ 339 (794)
T TIGR02093 268 KQQYFFVSASLQDIIRRHLETH-P-------DLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFA 339 (794)
T ss_pred HHHHHhhhhHHHHHHHHHHHhC-C-------ChhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhhee
Confidence 9999999999999999998753 2 5899999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCCHHHHHhhhhhhHHHHHhhccccc------------------------------------------
Q psy17283 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL------------------------------------------ 204 (635)
Q Consensus 167 ~t~HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~------------------------------------------ 204 (635)
||||||+|||||+||+++++++||||++||++||.+|+
T Consensus 340 yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vN 419 (794)
T TIGR02093 340 YTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVN 419 (794)
T ss_pred cccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhh
Confidence 99999999999999999999999999999999987664
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 420 GVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~ 499 (794)
T TIGR02093 420 GVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEE 499 (794)
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHH
Confidence
Q ss_pred --------------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCC
Q psy17283 205 --------------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGY 252 (635)
Q Consensus 205 --------------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y 252 (635)
|+|||||||||+||+|+|++||.+|++||+..++|+||||||||||+|
T Consensus 500 l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y 579 (794)
T TIGR02093 500 FRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGY 579 (794)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCc
Confidence 999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeecccc
Q psy17283 253 YTAKKIIKLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLD 295 (635)
Q Consensus 253 ~~ak~iIk~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlD 295 (635)
.+||+|||+|+++|++|||||.++++|||||| |||||||||||
T Consensus 580 ~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlD 659 (794)
T TIGR02093 580 HMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLD 659 (794)
T ss_pred HHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeeccc
Confidence 99999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhc-CCCCC
Q psy17283 296 GANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDSEN 374 (635)
Q Consensus 296 G~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~-~D~~~ 374 (635)
|||+|++++||+||+|+||++++||.++++.||+|+++|+.+|+|++|+|+|.+|+|+++.|+.|++|+++|+. +|+|+
T Consensus 660 GanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~l~~~l~~~~D~y~ 739 (794)
T TIGR02093 660 GANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNHGDPFF 739 (794)
T ss_pred chhHHHHHHhCcccEEEcCCCHHHHHHHHHcCCCchhcccCCHHHHHHHHHHhcCCCCCCCchHHHHHHHHHccCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 68876
Q ss_pred CC
Q psy17283 375 PI 376 (635)
Q Consensus 375 ~L 376 (635)
.|
T Consensus 740 vl 741 (794)
T TIGR02093 740 VL 741 (794)
T ss_pred ee
Confidence 66
No 3
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=4.3e-124 Score=1052.12 Aligned_cols=364 Identities=64% Similarity=1.090 Sum_probs=332.5
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||+|+|+|.||+|+|.||+|+..
T Consensus 28 RLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe~~r~~~~~~V~f~G~v~~~~~~~~~~~ 107 (713)
T PF00343_consen 28 RLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWEIRRPDESYEVKFGGRVEDDGGRKVRWE 107 (713)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTSEEEGGGEEEEEESEEEE-EETTEEEEE
T ss_pred hhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceEEecCCceEEEeccceEEecCCCccccc
Confidence 899999999999999999999999999999999999999999999976
Q ss_pred ----------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhhhhh
Q psy17283 50 ----------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQE 89 (635)
Q Consensus 50 ----------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl~Qe 89 (635)
|+.|+|..|+.+++.+|+||++|||+||+++||+||||||
T Consensus 108 ~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~~~~~fd~~~fn~gdy~~a~~~~~~~e~is~vLYP~d~~~~Gk~LRLkQq 187 (713)
T PF00343_consen 108 DGETVLAVPYDMPIPGYRTKTVNTLRLWSAEPSEEFDLESFNRGDYIKAVEEKNRAENISKVLYPNDSTEEGKELRLKQQ 187 (713)
T ss_dssp SCEEEEEEEEEEEEE-SSSS-EEEEEEEEEEESSSTTHHHHHTTCHHHHHHHHHHHHGGGTBSS-SSSSHHHHHHHHHHH
T ss_pred CCeEEEEEecCceeecCCCCceEEEEEeccCCCcccChhhcCCCcHHHHHHHHHHhhceeeecCCCCccccchhhhhhhH
Confidence 6899999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceec
Q psy17283 90 YFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTN 169 (635)
Q Consensus 90 ~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~ 169 (635)
|||+|||+|||||+|++.+ .++++||+++++||||||||+++|||||+|+|++|++|++||++|+++++|||
T Consensus 188 yf~vsa~lqdiir~~~~~~--------~~~~~~~~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTn 259 (713)
T PF00343_consen 188 YFFVSASLQDIIRRFKKSH--------GDLREFPDKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTN 259 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE
T ss_pred hhhhhhHHHHHHHHHHHhC--------CChHHCCcceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeec
Confidence 9999999999999998764 26999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCHHHHHhhhhhhHHHHHhhccccc---------------------------------------------
Q psy17283 170 HTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL--------------------------------------------- 204 (635)
Q Consensus 170 HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~--------------------------------------------- 204 (635)
|||+|||+|+||++|++++||||++||++||.+|+
T Consensus 260 HT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~LAl~~S~~vNGVS 339 (713)
T PF00343_consen 260 HTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIEEGNSKRFRMANLALRGSHSVNGVS 339 (713)
T ss_dssp --SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEETSSSCEEEHHHHHHHCESEEEESS
T ss_pred cccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhcccccccchhhcchhHHHHHhcccccchH
Confidence 99999999999999999999999999999999886
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 340 ~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~ 419 (713)
T PF00343_consen 340 KLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELRE 419 (713)
T ss_dssp HHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHH
Confidence
Q ss_pred -----------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHH
Q psy17283 205 -----------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTA 255 (635)
Q Consensus 205 -----------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~a 255 (635)
|||||||||||+||+|++++||.+|+++|+...+|+||||||||||+|.+|
T Consensus 420 vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~g 499 (713)
T PF00343_consen 420 VKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMG 499 (713)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHH
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeeccccCcc
Q psy17283 256 KKIIKLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLDGAN 298 (635)
Q Consensus 256 k~iIk~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlDG~~ 298 (635)
|+|||+|+++|++||+||.++++|||||| |||+||||||||||
T Consensus 500 K~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~n 579 (713)
T PF00343_consen 500 KEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWN 579 (713)
T ss_dssp HHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCH
T ss_pred HHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchh
Confidence 99999999999999999999999999999 99999999999999
Q ss_pred HHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhh-cCCCC
Q psy17283 299 VEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL-KWDSE 373 (635)
Q Consensus 299 ~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll-~~D~~ 373 (635)
+|+.++||++|+|+||.+++||.++++.||+|+++|+.+|+|++|+|+|.+|+|+++.|+.|++|+++++ .+|+|
T Consensus 580 iEi~e~vG~eN~fiFG~~~~ev~~~~~~gY~~~~~y~~~~~l~~vld~i~~g~f~~~~~~~f~~i~~~~~~~~D~y 655 (713)
T PF00343_consen 580 IEIAEAVGEENIFIFGLTAEEVEELRKNGYNPREYYENDPELKRVLDQIISGFFSPGDPDEFKPIYDSLLMYNDEY 655 (713)
T ss_dssp HHHHHHH-GGGSEEES-BHHHHHHHHHHT-HHHHHHHHSHHHHHHHHHHHHTTTTTTSTTTTHHHHHHCHHHTTTT
T ss_pred HHHHHhcCCCcEEEcCCCHHHHHHHHhcCCCcccccccCHHHHHHHHHHhcCCCCCCCchhHHHHHhCcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999954 66765
No 4
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=6.7e-123 Score=1053.96 Aligned_cols=367 Identities=57% Similarity=1.017 Sum_probs=353.3
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||||+|+|.||||+|.||+|+..
T Consensus 128 rLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~g~~~~w~~ 207 (815)
T PRK14986 128 RLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIE 207 (815)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEcCCCccCCCCceeEecCCcEEEEEeCCEEEecCceeEeeC
Confidence 899999999999999999999999999999999999999999999654
Q ss_pred ---------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhhhhhH
Q psy17283 50 ---------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEY 90 (635)
Q Consensus 50 ---------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl~Qe~ 90 (635)
||.|+|..|+++++.+||||++|||+|++|+||++||+|||
T Consensus 208 ~~~v~avpyD~pipgy~t~~vn~lRLW~a~~~~~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEy 287 (815)
T PRK14986 208 TEEILAVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEY 287 (815)
T ss_pred CeeEEEEeCCccccCCCCCceEEEEEEEeecCcccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHH
Confidence 56789999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecc
Q psy17283 91 FMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNH 170 (635)
Q Consensus 91 ~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~H 170 (635)
|||+||+|||||+|++.. + +++.+|++++|||||||||+++|||||+|+|++|++|++||++|+++|+||||
T Consensus 288 fl~~agv~di~r~~~~~~-~-------~l~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnH 359 (815)
T PRK14986 288 FLVSATVQDILSRHYQLH-K-------TYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNH 359 (815)
T ss_pred HhhhHHHHHHHHHHHHhC-C-------CHhhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecc
Confidence 999999999999998753 2 58889999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCHHHHHhhhhhhHHHHHhhccccc----------------------------------------------
Q psy17283 171 TVLPEALERWPVTLMENLLPRHMQIIYHINFLHL---------------------------------------------- 204 (635)
Q Consensus 171 T~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~---------------------------------------------- 204 (635)
||+|||||+||+++++++||||++||++||.+|+
T Consensus 360 T~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~ 439 (815)
T PRK14986 360 TLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSE 439 (815)
T ss_pred cCChHHhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHH
Confidence 9999999999999999999999999998876543
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 440 lH~evl~~~~f~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~v 519 (815)
T PRK14986 440 LHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQA 519 (815)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHH
Confidence
Q ss_pred ----------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHH
Q psy17283 205 ----------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAK 256 (635)
Q Consensus 205 ----------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak 256 (635)
|||||||||||+||+|+|++||.+|++||+.+++|+||||||||||+|.+||
T Consensus 520 k~~nK~~L~~~i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK 599 (815)
T PRK14986 520 KLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAK 599 (815)
T ss_pred HHHHHHHHHHHHHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeeccccCccH
Q psy17283 257 KIIKLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLDGANV 299 (635)
Q Consensus 257 ~iIk~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlDG~~~ 299 (635)
+|||+|+++|++|||||.++++|||||| ||||||||||||||+
T Consensus 600 ~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv 679 (815)
T PRK14986 600 HIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV 679 (815)
T ss_pred HHHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh
Confidence 9999999999999999999999999999 999999999999999
Q ss_pred HHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhc-CCCCCCC
Q psy17283 300 EMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDSENPI 376 (635)
Q Consensus 300 E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~-~D~~~~L 376 (635)
|++++||++|+|+||.+++||.++++.||+|+++|+.+|+|++|+|+|.+|+|+++.++.|++|+++|+. +|+|+.|
T Consensus 680 Ei~e~vG~eN~~~fG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~vl 757 (815)
T PRK14986 680 EMLEHVGEENIFIFGNTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLINFGDHYQVL 757 (815)
T ss_pred HHHHhcCCCcEEEeCCCHHHHHHHHHcCCChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHhccCCCeeEee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 6887655
No 5
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=6.2e-123 Score=1050.62 Aligned_cols=367 Identities=54% Similarity=0.904 Sum_probs=354.0
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||||+|+|+||+|+|.||.|+..
T Consensus 117 rLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~~G~~~w~~ 196 (798)
T PRK14985 117 RLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKVTKQDGRERWEP 196 (798)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCCcccCCCCceecCCCceEEEeeCCEEEeeCCcEEEEC
Confidence 899999999999999999999999999999999999999999999765
Q ss_pred ---------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhhhhhH
Q psy17283 50 ---------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEY 90 (635)
Q Consensus 50 ---------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl~Qe~ 90 (635)
||.|+|..++.....+|+||++|||+|++++||+|||+|||
T Consensus 197 ~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~~~~~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEy 276 (798)
T PRK14985 197 AFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQY 276 (798)
T ss_pred CEEEEEEeccccccCCCCCceEEEEEeEcCCCCccCHHHcCCcchhhccccchhhcchhceecCCCCCcchHHHHHHHHH
Confidence 56788888999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecc
Q psy17283 91 FMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNH 170 (635)
Q Consensus 91 ~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~H 170 (635)
||||||+|||||+|++. | .+++.+|++++|||||||||+++|||||+|+|++|++|++||++|+++|+||||
T Consensus 277 fl~sa~vqdilr~~~~~--~------~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnH 348 (798)
T PRK14985 277 FQCACSVADILRRHHLA--G------RKLHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNH 348 (798)
T ss_pred HHHHHHHHHHHHHHHhc--C------CChhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecC
Confidence 99999999999999863 2 258899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCHHHHHhhhhhhHHHHHhhccccc----------------------------------------------
Q psy17283 171 TVLPEALERWPVTLMENLLPRHMQIIYHINFLHL---------------------------------------------- 204 (635)
Q Consensus 171 T~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~---------------------------------------------- 204 (635)
||+|||||+||+++++++||||++||++||.+|+
T Consensus 349 T~lpealE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~ 428 (798)
T PRK14985 349 TLMPEALECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHS 428 (798)
T ss_pred CCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHh
Confidence 9999999999999999999999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 429 eil~~~~f~df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~ 508 (798)
T PRK14985 429 DLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQA 508 (798)
T ss_pred chhHHhhhhhhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHH
Q psy17283 205 -------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKII 259 (635)
Q Consensus 205 -------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iI 259 (635)
|||||||||||+||+|+|++||.+|+++|+..++|+||||||||||+|.+||+||
T Consensus 509 nK~~L~~~i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iI 588 (798)
T PRK14985 509 NKVRLAEFVKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNII 588 (798)
T ss_pred HHHHHHHHHHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeeccccCccHHHH
Q psy17283 260 KLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLDGANVEMA 302 (635)
Q Consensus 260 k~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlDG~~~E~~ 302 (635)
|+|+++|++|||||.++++|||||| ||||||||||||||+|++
T Consensus 589 klI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~ 668 (798)
T PRK14985 589 FAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA 668 (798)
T ss_pred HHHHHHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHH
Confidence 9999999999999999999999999 999999999999999999
Q ss_pred HhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhc-CCCCCCC
Q psy17283 303 EEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDSENPI 376 (635)
Q Consensus 303 ~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~-~D~~~~L 376 (635)
++||++|+|+||.+++||.++++.||+|+++|+.+|+|++|+|+|.+|+|+++.|+.|++|+++|+. +|+|+.|
T Consensus 669 e~vG~eN~f~fG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~vl 743 (798)
T PRK14985 669 EQVGEENIFIFGHTVEQVKALLAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQGGDPYLVL 743 (798)
T ss_pred HHhCcCcEEEeCCCHHHHHHHHHcCCChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhCCCeeEee
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 6887666
No 6
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=5.6e-122 Score=1048.06 Aligned_cols=367 Identities=70% Similarity=1.154 Sum_probs=354.4
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||||+||||+|+|++|+|+|.||+|+..
T Consensus 111 rLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~ 190 (797)
T cd04300 111 RLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVEHYEDGGRLRV 190 (797)
T ss_pred hhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCCCceEecCCcEEEEEECCEEEEeecCCccee
Confidence 999999999999999999999999999999999999999999999653
Q ss_pred -------------------------------------------ccCCchhhhhhhhhhhcccccccCCCCCCCCcchhhh
Q psy17283 50 -------------------------------------------VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRL 86 (635)
Q Consensus 50 -------------------------------------------~~~g~~~~~~~~~~~~e~it~~LY~~d~~~~g~~lRl 86 (635)
||.|+|..++.....+++||++|||+||+++|++|||
T Consensus 191 ~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL 270 (797)
T cd04300 191 RWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRL 270 (797)
T ss_pred eecCcceEEeeecceeecCCCCCceEEEEEEEeeCCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHH
Confidence 4678888999999999999999999999999999999
Q ss_pred hhhHHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccc
Q psy17283 87 KQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166 (635)
Q Consensus 87 ~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~ 166 (635)
+|||||||||+|||||+|++.. + +++.+|++++|||||||||+++|||||+|+|++|++|++||++|+++|+
T Consensus 271 ~Qeyfl~sag~qdilr~~~~~~-~-------~~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~ 342 (797)
T cd04300 271 KQQYFFVSASLQDIIRRFKKTH-G-------PLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFA 342 (797)
T ss_pred HHHHHHhhhHHHHHHHHHHHhC-C-------ChhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhee
Confidence 9999999999999999998764 2 5889999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCCHHHHHhhhhhhHHHHHhhccccc------------------------------------------
Q psy17283 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL------------------------------------------ 204 (635)
Q Consensus 167 ~t~HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~~------------------------------------------ 204 (635)
||||||+|||||+||+++++++||||++||++||.+|+
T Consensus 343 yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~v~Ma~LAi~~S~~vN 422 (797)
T cd04300 343 YTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVN 422 (797)
T ss_pred eecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcccccCCCCEEehHHHHHhcCcchh
Confidence 99999999999999999999999999999999998775
Q ss_pred --------------------------------------------------------------------------------
Q psy17283 205 -------------------------------------------------------------------------------- 204 (635)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (635)
T Consensus 423 GVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~ 502 (797)
T cd04300 423 GVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKE 502 (797)
T ss_pred hhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHH
Confidence
Q ss_pred --------------------------------cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCC
Q psy17283 205 --------------------------------QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGY 252 (635)
Q Consensus 205 --------------------------------~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y 252 (635)
|||||||||||+||+|++++||.+|+++|+.+++|+||||||||||+|
T Consensus 503 l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y 582 (797)
T cd04300 503 FRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGY 582 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCc
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeecccc
Q psy17283 253 YTAKKIIKLICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLD 295 (635)
Q Consensus 253 ~~ak~iIk~I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlD 295 (635)
.+||+|||+|+++|++|||||.++++|||||| |||||||||||
T Consensus 583 ~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlD 662 (797)
T cd04300 583 YMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLD 662 (797)
T ss_pred HHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeeccc
Confidence 99999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhc-CCCCC
Q psy17283 296 GANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDSEN 374 (635)
Q Consensus 296 G~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~-~D~~~ 374 (635)
|||+|++++||+||+|+||.+++||.++++.||+|.++|+.+|+|++|+|+|.+|+|+++.|+.|++|+++|+. +|+|+
T Consensus 663 GanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~ 742 (797)
T cd04300 663 GANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNGNDEYL 742 (797)
T ss_pred chhHHHHHHhCcCcEEEeCCCHHHHHHHHHcCCChHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHccCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 68876
Q ss_pred CC
Q psy17283 375 PI 376 (635)
Q Consensus 375 ~L 376 (635)
.|
T Consensus 743 vl 744 (797)
T cd04300 743 VL 744 (797)
T ss_pred ee
Confidence 66
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-102 Score=879.16 Aligned_cols=342 Identities=58% Similarity=0.917 Sum_probs=311.8
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEeeCCeeeccCcchhhh--------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY-------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~~g~Q~e~~~~wl~~-------------------------------- 49 (635)
||||||||||||||+|++||||+|+||||+|++.||||+|.|+.|+..
T Consensus 119 rLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~~~~~~lrlW 198 (750)
T COG0058 119 RLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYDNRVVTLRLW 198 (750)
T ss_pred HHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEeccCcEEEEEEE
Confidence 899999999999999999999999999999998899999999999863
Q ss_pred -ccCCchhhhhhhhhhh------cccccccCCCCCCCCcchhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccC
Q psy17283 50 -VNDGDYIQAVLDRNLA------ENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKF 122 (635)
Q Consensus 50 -~~~g~~~~~~~~~~~~------e~it~~LY~~d~~~~g~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~ 122 (635)
.+.|+.+..+++++.. ++||++|||+|| +++||+|||||||||+|+|++++..+. + +++
T Consensus 199 ~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~-~-------~~~-- 264 (750)
T COG0058 199 QAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEH-H-------DLD-- 264 (750)
T ss_pred EEecCccceEeecCCCcccchhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhcc-c-------ccc--
Confidence 3567766677766665 669999999998 899999999999999999999843222 1 243
Q ss_pred CCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecccccccccccCCHHHHHhhhhhhHHHHHhhccc
Q psy17283 123 PEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFL 202 (635)
Q Consensus 123 p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~ 202 (635)
..+.|||||||++++||+||+|+|++|++|++||++|+++++||||||+|||||+||+++++++||||++|+++||.+
T Consensus 265 --~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~ 342 (750)
T COG0058 265 --VLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINAR 342 (750)
T ss_pred --chhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhh
Confidence 455679999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc------------------------------------------------------------------------------
Q psy17283 203 HL------------------------------------------------------------------------------ 204 (635)
Q Consensus 203 ~~------------------------------------------------------------------------------ 204 (635)
|+
T Consensus 343 ~l~~~~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n 422 (750)
T COG0058 343 FLPEVRLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPAN 422 (750)
T ss_pred hhHHHHhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCCcCCchhhhhhh
Confidence 65
Q ss_pred ---------------------------------------------------------------------cccccccccch
Q psy17283 205 ---------------------------------------------------------------------QVKRIHEYKRQ 215 (635)
Q Consensus 205 ---------------------------------------------------------------------~~rR~heYKRq 215 (635)
|||||||||||
T Consensus 423 ~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq 502 (750)
T COG0058 423 PGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQ 502 (750)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhh
Confidence 99999999999
Q ss_pred hhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCcceEEEE-----------
Q psy17283 216 LLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFL----------- 284 (635)
Q Consensus 216 ~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~lkvvfl----------- 284 (635)
+||+++++++|..|++|+. +|+++||||||||+|+.||+|||+|+++|+++|| ++||||+
T Consensus 503 ~Lnl~~i~~ly~~i~~d~~---prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~------~lkVvFl~nYdvslA~~i 573 (750)
T COG0058 503 LLNLLDIERLYRILKEDWV---PRVQIIFAGKAHPADYAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLAELL 573 (750)
T ss_pred HHhHhhHHHHHHHHhcCCC---CceEEEEeccCCCcchHHHHHHHHHHHHHHhhcc------cceEEEeCCCChhHHHhh
Confidence 9999999999999998542 4455599999999999999999999999999988 8999999
Q ss_pred --------------------------ecCceeeccccCccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCc-ccccCC
Q psy17283 285 --------------------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAP-SYYNAN 337 (635)
Q Consensus 285 --------------------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~-~~Y~~~ 337 (635)
|||+||||||||||+|++++||++|||+||.+.+++..+++++|++. .+|+.+
T Consensus 574 ipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v~~~~~~~~~~~~~y~~~~ 653 (750)
T COG0058 574 IPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELE 653 (750)
T ss_pred cccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhHHHHHhcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988 777889
Q ss_pred hhHHHHHHhhhcCCCCCCCchhhHHHHHHhh
Q psy17283 338 PELKLVVDQITNGFFSPENPDEFKDLSDILL 368 (635)
Q Consensus 338 ~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll 368 (635)
++++.+++++.+|.|+++.++.|+.++++|.
T Consensus 654 ~~v~~~~~~~~~~~~~p~~~~~~~~~~~sl~ 684 (750)
T COG0058 654 NEVKPVLDEIIDGRFSPGWKSRFKNLIDSLL 684 (750)
T ss_pred HHHHHHHHHHhcccCCcccHHHHHHHHHHhh
Confidence 9999999999999999888888888877765
No 8
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.9e-69 Score=622.31 Aligned_cols=323 Identities=26% Similarity=0.393 Sum_probs=282.6
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEee-CCeeeccCcchhhh-------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIK-NGEQTEEPDDWLRY------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~-~g~Q~e~~~~wl~~------------------------------- 49 (635)
||||||||||||||+|++||||+|+||||+|+|+ ||||+|.|+.|...
T Consensus 110 ~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~~~~G~~~~v~v~l~g~~v~~rvw 189 (778)
T cd04299 110 ILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDADGEPVRVSVELPGRTVYARVW 189 (778)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEecCCCCeEEEEEeeCCCceEEEEE
Confidence 7999999999999999999999999999999998 99999999998553
Q ss_pred -ccCCchhhhhhhhhhhcc------cccccCCCCCCCCcchhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccC
Q psy17283 50 -VNDGDYIQAVLDRNLAEN------ISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKF 122 (635)
Q Consensus 50 -~~~g~~~~~~~~~~~~e~------it~~LY~~d~~~~g~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~ 122 (635)
.++|+++.+++|++..+| ||++||++| +++||+||||||+||++ +++++ | +
T Consensus 190 ~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~-~Lr~l-----g--------~--- 247 (778)
T cd04299 190 KAQVGRVPLYLLDTDIPENSPDDRGITDRLYGGD-----QETRIQQEILLGIGGVR-ALRAL-----G--------I--- 247 (778)
T ss_pred EEEcCCCCEEEecCCccccchhhcccccCCCCCc-----HHHHHHHHHHHHHHHHH-HHHHh-----C--------C---
Confidence 356888999999987544 999999998 89999999999999998 66764 2 2
Q ss_pred CCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecccccccccccCCHHHHHhhhhhhH---------
Q psy17283 123 PEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHM--------- 193 (635)
Q Consensus 123 p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~HT~~~e~~e~~~~~l~~~~lpr~~--------- 193 (635)
++.++|+||+||||+++|+||+|++++|++|++||++|+.+++||||||+|+|||+||.+++++++|+|+
T Consensus 248 -~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~~ 326 (778)
T cd04299 248 -KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRDR 326 (778)
T ss_pred -CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHHH
Confidence 4689999999999999999999999889999999999999999999999999999999999988765310
Q ss_pred --------------------------------------------------------HHHHhhccccc-------------
Q psy17283 194 --------------------------------------------------------QIIYHINFLHL------------- 204 (635)
Q Consensus 194 --------------------------------------------------------~ii~~~n~~~~------------- 204 (635)
.|..+||+++.
T Consensus 327 ~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~ 406 (778)
T cd04299 327 FLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYD 406 (778)
T ss_pred HhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHH
Confidence 14566777655
Q ss_pred ----------------------------------------------------------------------------cccc
Q psy17283 205 ----------------------------------------------------------------------------QVKR 208 (635)
Q Consensus 205 ----------------------------------------------------------------------------~~rR 208 (635)
||||
T Consensus 407 ~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarR 486 (778)
T cd04299 407 RYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARR 486 (778)
T ss_pred HhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeec
Confidence 8999
Q ss_pred cccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCcceEEEE----
Q psy17283 209 IHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFL---- 284 (635)
Q Consensus 209 ~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~lkvvfl---- 284 (635)
||+|||++| +|++++||.+|+++|. .|+||||||||||+|..||++||+|+++++ ||.+.+ ||||+
T Consensus 487 fa~YKR~~L-il~dl~rl~~il~~~~---~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~----~p~~~~--kVvfle~Yd 556 (778)
T cd04299 487 FATYKRATL-LLRDPERLKRLLNDPE---RPVQFIFAGKAHPADEPGKELIQEIVEFSR----RPEFRG--RIVFLEDYD 556 (778)
T ss_pred chhhhhHHH-HHHHHHHHHHHhhCCC---CCeEEEEEEecCccchHHHHHHHHHHHHHh----CcCCCC--cEEEEcCCC
Confidence 999999999 9999999999999986 799999999999999999999999999997 799998 99999
Q ss_pred ---------------------------------ecCceeeccccCccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCc
Q psy17283 285 ---------------------------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAP 331 (635)
Q Consensus 285 ---------------------------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~ 331 (635)
|||+||+||+||||.|+++ +.|||+||..........++..++.
T Consensus 557 ~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~---g~nGwaig~~~~~~~~~~~d~~da~ 633 (778)
T cd04299 557 MALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD---GENGWAIGDGDEYEDDEYQDAEEAE 633 (778)
T ss_pred HHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC---CCCceEeCCCccccChhhcchhhHH
Confidence 9999999999999999996 8999999985433333345567788
Q ss_pred ccccCChhHHHHHHhhhcCCCC---CCCchhhHHHHHH
Q psy17283 332 SYYNANPELKLVVDQITNGFFS---PENPDEFKDLSDI 366 (635)
Q Consensus 332 ~~Y~~~~~l~~vld~L~dG~fs---~~~pe~fr~L~~~ 366 (635)
++|+.++. +|.+.+|. .+.|..|..+|..
T Consensus 634 ~Ly~~Le~------~i~p~yy~r~~~g~p~~W~~~~k~ 665 (778)
T cd04299 634 ALYDLLEN------EVIPLFYDRDEGGYPPGWVAMMKH 665 (778)
T ss_pred HHHHHHHH------HHHHHHhcCCCCCCCHHHHHHHHH
Confidence 88875554 67777775 3458889988774
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=9.5e-65 Score=573.87 Aligned_cols=318 Identities=25% Similarity=0.399 Sum_probs=275.3
Q ss_pred CccccchhhhhhcCCCeEEEeeccCCCceeEEee-CCeeeccCcchhhh-------------------------------
Q psy17283 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIK-NGEQTEEPDDWLRY------------------------------- 49 (635)
Q Consensus 2 rLA~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~i~-~g~Q~e~~~~wl~~------------------------------- 49 (635)
||||||||||||||+|++||||+|+||||+|+|+ ||+|+|.|++|+..
T Consensus 23 ~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~~~~g~~~~~~v~i~g~~~~~rlw 102 (601)
T TIGR02094 23 VLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVLDTDGKWLKISVRIRGRDVYAKVW 102 (601)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEecCCCCeEEEEEecCCcEEEEEEE
Confidence 8999999999999999999999999999999998 99999999999643
Q ss_pred -ccCCchhhhhhhhhhhc------ccccccCCCCCCCCcchhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccC
Q psy17283 50 -VNDGDYIQAVLDRNLAE------NISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKF 122 (635)
Q Consensus 50 -~~~g~~~~~~~~~~~~e------~it~~LY~~d~~~~g~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~ 122 (635)
...|+++.+++|++.++ +||++|||+| +++|++||+|||+||++ .+++. | +
T Consensus 103 ~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~l~-~l~~l-----~--------~--- 160 (601)
T TIGR02094 103 RVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGGVR-ALRAL-----G--------I--- 160 (601)
T ss_pred EEEeCCCCEEEecCCCcccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHHHH-HHHHc-----C--------C---
Confidence 24678888899888644 4999999999 89999999999999998 55542 2 1
Q ss_pred CCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecccccccccccCCHHHHHhhhhhhHHHHHhhccc
Q psy17283 123 PEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFL 202 (635)
Q Consensus 123 p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~ 202 (635)
++.++|+||+|||++++||||+++ +++++|++||++|+.+++|||||++|+|+|+||.+++.++||+...+
T Consensus 161 -~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~------- 231 (601)
T TIGR02094 161 -DPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAAN------- 231 (601)
T ss_pred -CceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhH-------
Confidence 679999999999999999999998 77999999999999999999999999999999999999988862211
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCcceEE
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVV 282 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~lkvv 282 (635)
T Consensus 232 -------------------------------------------------------------------------------- 231 (601)
T TIGR02094 232 -------------------------------------------------------------------------------- 231 (601)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCceeeccccCccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHH
Q psy17283 283 FLLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKD 362 (635)
Q Consensus 283 fl~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~ 362 (635)
+|++.+
T Consensus 232 ------------------------------~gl~~~-------------------------------------------- 237 (601)
T TIGR02094 232 ------------------------------LGLPRE-------------------------------------------- 237 (601)
T ss_pred ------------------------------hCCCHH--------------------------------------------
Confidence 011100
Q ss_pred HHHHhhcCCCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q psy17283 363 LSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRM 442 (635)
Q Consensus 363 L~~~Ll~~D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~ 442 (635)
.+
T Consensus 238 ------------------------------------------------------------------------------~~ 239 (601)
T TIGR02094 238 ------------------------------------------------------------------------------QL 239 (601)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HhccccccCCCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCc---cceeccCccccccccccChhHHHH
Q psy17283 443 RRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEK---FQNKTNGITPRRWLLLCNPSLADV 519 (635)
Q Consensus 443 ~~l~ii~~~~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~k---i~~iTNGVh~rrWl~~~np~l~~L 519 (635)
..+++...+..++|||+++|+++|++|||||++|+++++ +||+++|+++|.+ |++||||||+++|. +|.++.|
T Consensus 240 ~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~-~l~~~l~~~~~~~~~~i~gItNGId~~~W~---~~~~~~l 315 (601)
T TIGR02094 240 LALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPIGYVTNGVHNPTWV---APELRDL 315 (601)
T ss_pred HhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHH-HHHHhhhhhcccccCCccceeCCccccccC---CHHHHHH
Confidence 011111001135799999999999999999999999998 9999999999998 99999999999998 9999999
Q ss_pred HHhHhCchhhhChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------cCCCcceec
Q psy17283 520 IAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIK-----------------VNAASIFDM 582 (635)
Q Consensus 520 ~~~~ig~~W~~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~-----------------i~p~slfDv 582 (635)
+++|+|++|.+++++++.|+++ +.+++++||+.|++||.+|+++|++++|+. +||+++|++
T Consensus 316 ~~~y~~~~w~~~~~~~~~~~~~--~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig 393 (601)
T TIGR02094 316 YERYLGENWRELLADEELWEAI--DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIG 393 (601)
T ss_pred HHHhCCcchhccchhhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEE
Confidence 9999999999999999999988 458999999999999999999999999988 999999999
Q ss_pred cchhHH
Q psy17283 583 QNQTKW 588 (635)
Q Consensus 583 q~~~~W 588 (635)
+.++--
T Consensus 394 ~v~Rl~ 399 (601)
T TIGR02094 394 FARRFA 399 (601)
T ss_pred EEEcch
Confidence 977433
No 10
>KOG2099|consensus
Probab=100.00 E-value=6.4e-65 Score=545.41 Aligned_cols=291 Identities=56% Similarity=0.916 Sum_probs=260.4
Q ss_pred cCceeecc--ccCccHHHHHhhc-CcceeecCCchhhHHH-HHHcCCCC----cccccCChhHHHHHHhhhcCCCCCCCc
Q psy17283 286 NGALTIGT--LDGANVEMAEEMG-NDNIFIFGMTVDQVEE-LKKKGYDA----PSYYNANPELKLVVDQITNGFFSPENP 357 (635)
Q Consensus 286 NG~l~l~t--lDG~~~E~~~~vG-~eN~~~fG~~~~ev~~-l~~~gy~~----~~~Y~~~~~l~~vld~L~dG~fs~~~p 357 (635)
|-|-++++ +.|.|..-.++.. .+-.|+...+.+++.. .+...+.+ +.-++..|+ +|..||+|+|++.++|
T Consensus 271 ~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~~~~~~~FPd--kVAiQlNDTHPtLaIp 348 (843)
T KOG2099|consen 271 NLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPVRTNFEEFPD--KVAIQLNDTHPTLAIP 348 (843)
T ss_pred HhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCcccccccchhhCcH--hheeeccCCCccccHH
Confidence 33334443 3444444333332 4567888888888754 33333432 234566787 7889999999999999
Q ss_pred hhhHHHHHHhhcCCCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy17283 358 DEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPN 437 (635)
Q Consensus 358 e~fr~L~~~Ll~~D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~ 437 (635)
|++|-|+|. ++|+|++||++|.+||+|||||++|||+|+||++||+++||||++|||+||.+|++.+.+.||.
T Consensus 349 ELmRiLvD~-------e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleIIy~In~~~l~~i~~~fp~ 421 (843)
T KOG2099|consen 349 ELMRILVDL-------EGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEIIYEINQRFLQTVAAKFPG 421 (843)
T ss_pred HHHHHHHhc-------ccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999886 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhccccccC-CCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceeccCccccccccccChhH
Q psy17283 438 DLDRMRRMSLIEED-GDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSL 516 (635)
Q Consensus 438 d~~~~~~l~ii~~~-~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNGVh~rrWl~~~np~l 516 (635)
|.+++.+||++|++ +.+++|||+||+++||.||||++||++++|+++|+||+++||+||+|+|||||||||+.+|||.|
T Consensus 422 D~drlrrmsiiee~~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~L 501 (843)
T KOG2099|consen 422 DVDRLRRMSIIEENSPEKRINMAHLCIVGSHAVNGVAEIHSEILKQSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGL 501 (843)
T ss_pred cHHHHhhhhhhhcCCccceeeeeeeeeecccccccHHHHHHHHHHHHHHHHHHHhChHHhccccCCcCHHHHHHhcCchH
Confidence 99999999999876 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCchhhhChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceeccch
Q psy17283 517 ADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQ 585 (635)
Q Consensus 517 ~~L~~~~ig~~W~~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDvq~~ 585 (635)
++||.++||++|.+|+++|.+|++|++|+.|..++.++|++||.+|++||++.+|+.++|+||||+|..
T Consensus 502 adlI~e~ige~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~NKlk~a~~le~e~~v~inp~smFDiqVK 570 (843)
T KOG2099|consen 502 ADLITEKIGEEWITDLDQLTKLRKFADDEEFQREWAKVKQENKLKLAAYLEKEYGVKINPSSMFDIQVK 570 (843)
T ss_pred HHHHHHHhhhHhhhhHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHHHHHHhCcccCcchhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999954
No 11
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=5.4e-62 Score=554.33 Aligned_cols=263 Identities=48% Similarity=0.792 Sum_probs=241.8
Q ss_pred eecCC-chhhH-HHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcCCCCCCCChHHHHHHhhhc
Q psy17283 311 FIFGM-TVDQV-EELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDSENPIDSLQAWDITVKT 388 (635)
Q Consensus 311 ~~fG~-~~~ev-~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~~~~L~~~~A~~iv~~~ 388 (635)
++||. +..++ ..+++.+. + .+..| .+++.||++||++...||++|.+++. ++++|++||++|+++
T Consensus 271 yfl~~aglqdiir~~~~~~~-~---l~~l~--~~~~ihlNDtHpalai~ElmR~L~d~-------~gl~wd~Aw~iv~~~ 337 (794)
T TIGR02093 271 YFFVSASLQDIIRRHLETHP-D---LSDFP--KKVAIQLNDTHPALAIPELMRLLIDE-------EGMDWDEAWDITTKT 337 (794)
T ss_pred HHhhhhHHHHHHHHHHHhCC-C---hhhCC--cceEEEecCCchHHHHHHHHHHHHHh-------cCCCHHHHHHHHHhh
Confidence 55664 44554 34444332 1 23334 36788999999999999999998886 579999999999999
Q ss_pred cccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhcch
Q psy17283 389 CAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHA 468 (635)
Q Consensus 389 ~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S~~ 468 (635)
|+||||||||||||+||++||+++||||++||++||++|+..++..+|.|.+++.+|++|+++++++|+||+||+++||+
T Consensus 338 ~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~ 417 (794)
T TIGR02093 338 FAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHS 417 (794)
T ss_pred eecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988766789999999999999
Q ss_pred hHhHHHHhHhhhhhhhhhhhhccCCCccceeccCccccccccccChhHHHHHHhHhCchhhhChhHHHHHHhhhCChHhH
Q psy17283 469 VNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQ 548 (635)
Q Consensus 469 vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNGVh~rrWl~~~np~l~~L~~~~ig~~W~~~~~~l~~l~~~~~d~~~~ 548 (635)
|||||+||++|+|++||++|+++||++|+|||||||+|||+.+|||+|++|++++||++|.+|++.+++|+++++|+.|.
T Consensus 418 vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~ 497 (794)
T TIGR02093 418 VNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFL 497 (794)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceeccchh
Q psy17283 549 REVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQT 586 (635)
Q Consensus 549 ~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDvq~~~ 586 (635)
++||++|++||++|++||++++|+.+||++|||+|.++
T Consensus 498 ~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR 535 (794)
T TIGR02093 498 EEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKR 535 (794)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCccccchhhhee
Confidence 99999999999999999999999999999999999764
No 12
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.4e-61 Score=552.84 Aligned_cols=273 Identities=50% Similarity=0.848 Sum_probs=245.7
Q ss_pred ccCccHHHHHhhcCcceeecCC-chhhH-HHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcCC
Q psy17283 294 LDGANVEMAEEMGNDNIFIFGM-TVDQV-EELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWD 371 (635)
Q Consensus 294 lDG~~~E~~~~vG~eN~~~fG~-~~~ev-~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D 371 (635)
..|....+.++ ++||. +..++ ..+++.+.+- +..| +.++.||++||++...||++|.+++.
T Consensus 263 ~~Gk~lRL~Qe------yfl~sag~qdilr~~~~~~~~~----~~l~--~~~~ihlNDtHpalai~ElmR~L~d~----- 325 (797)
T cd04300 263 EEGKELRLKQQ------YFFVSASLQDIIRRFKKTHGPL----SEFP--DKVAIQLNDTHPALAIPELMRILVDE----- 325 (797)
T ss_pred hhHHHHHHHHH------HHHhhhHHHHHHHHHHHhCCCh----hhCC--CceEEEecCCcHHHHHHHHHHHHHHh-----
Confidence 33444445555 56664 55554 4555543221 2333 36788999999999999999998876
Q ss_pred CCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccC
Q psy17283 372 SENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEED 451 (635)
Q Consensus 372 ~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~ 451 (635)
++++|++||++|+++|+||||||||||||+||++||+++||||++||++||.+|++.+...+|.|.+++.+||+++++
T Consensus 326 --~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l~ii~~~ 403 (797)
T cd04300 326 --EGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEG 403 (797)
T ss_pred --cCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcccccC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceeccCccccccccccChhHHHHHHhHhCchhhhC
Q psy17283 452 GDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIH 531 (635)
Q Consensus 452 ~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNGVh~rrWl~~~np~l~~L~~~~ig~~W~~~ 531 (635)
++++||||+||+++||+|||||+||++|+|+.+|++|+++||++|+|||||||+|||+.+|||+|++|++++||++|.+|
T Consensus 404 ~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d 483 (797)
T cd04300 404 GEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTD 483 (797)
T ss_pred CCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhC
Confidence 66789999999999999999999999999955599999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceeccch
Q psy17283 532 LEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQ 585 (635)
Q Consensus 532 ~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDvq~~ 585 (635)
+++++.|+++.+|+.|.++||++|+++|++|++||++++|+.+||++|||+|.+
T Consensus 484 ~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~K 537 (797)
T cd04300 484 LDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQVK 537 (797)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEee
Confidence 999999999999999999999999999999999999999999999999999976
No 13
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=5.7e-61 Score=547.07 Aligned_cols=275 Identities=36% Similarity=0.634 Sum_probs=245.5
Q ss_pred ccccCccHHHHHhhcCcceeecCC-chhhHH-HHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhc
Q psy17283 292 GTLDGANVEMAEEMGNDNIFIFGM-TVDQVE-ELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK 369 (635)
Q Consensus 292 ~tlDG~~~E~~~~vG~eN~~~fG~-~~~ev~-~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~ 369 (635)
+++.|....+.++ ++||. +..++. ...+. +.+ .+..| .+++.||++||++...||++|.+++.
T Consensus 274 ~~y~Gk~lRLkQE------yfl~~agv~di~r~~~~~-~~~---l~~l~--~~v~ihlNDtHpa~~i~ElmR~L~d~--- 338 (815)
T PRK14986 274 STYSGRELRLRQE------YFLVSATVQDILSRHYQL-HKT---YDNLA--DKIAIHLNDTHPVLSIPELMRLLIDE--- 338 (815)
T ss_pred CCcccHHHHHHHH------HHhhhHHHHHHHHHHHHh-CCC---HhhCC--cccEEEecCCcHHHHHHHHHHHHHHh---
Confidence 4455555666665 66675 444442 22332 222 12222 25788999999999999999998876
Q ss_pred CCCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccc
Q psy17283 370 WDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIE 449 (635)
Q Consensus 370 ~D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~ 449 (635)
++++|++||++|+++|+||||||||||||+||++||+++||||++||++||.+|++.+...+|.|.+++.+|+||+
T Consensus 339 ----~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~~~~~~~~~~~~~sii~ 414 (815)
T PRK14986 339 ----HKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIID 414 (815)
T ss_pred ----cCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHHhCCCcHHHHhhhhccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceeccCccccccccccChhHHHHHHhHhCchhh
Q psy17283 450 EDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWI 529 (635)
Q Consensus 450 ~~~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNGVh~rrWl~~~np~l~~L~~~~ig~~W~ 529 (635)
++++++||||+||+++||+|||||+||++|++++||++|+++||++|.+||||||+|||+.+|||+|++|++++||++|.
T Consensus 415 ~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~ 494 (815)
T PRK14986 415 ESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWR 494 (815)
T ss_pred cCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhh
Confidence 76556899999999999999999999999997799999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceeccch
Q psy17283 530 IHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQ 585 (635)
Q Consensus 530 ~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDvq~~ 585 (635)
+|+++++.|+++++|+.|.++||++|+++|.+|++||++++|+.+||++|||+|.+
T Consensus 495 ~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~qak 550 (815)
T PRK14986 495 TDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIK 550 (815)
T ss_pred hChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeeeeh
Confidence 99999999999999999999999999999999999999999999999999999843
No 14
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=7.5e-61 Score=544.23 Aligned_cols=236 Identities=40% Similarity=0.697 Sum_probs=227.5
Q ss_pred HHHHHhhhcCCCCCCCchhhHHHHHHhhcCCCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHH
Q psy17283 341 KLVVDQITNGFFSPENPDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQII 420 (635)
Q Consensus 341 ~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii 420 (635)
..++.||++||++...||++|.+++. ++++|++||++|+++|+||||||||||||+||++||+++||||++||
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~-------~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii 374 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDE-------HQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQII 374 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHH
Confidence 36788999999999999999998875 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceec
Q psy17283 421 YHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500 (635)
Q Consensus 421 ~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iT 500 (635)
++||.+|+..+...+|.|.+++.+|+||++ ++||||+||+++||+|||||+||++|++++||++|+++||++|+|||
T Consensus 375 ~~in~~fl~~~~~~~~~d~~~~~~~sii~~---~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvT 451 (798)
T PRK14985 375 KEINTRFKTLVEKTWPGDKKVWAKLAVVHD---KQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVT 451 (798)
T ss_pred HHHHHHHHHHHHHhCCCcHHHhhhhhhccC---CeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcC
Confidence 999999999999999999999999999975 48999999999999999999999998777999999999999999999
Q ss_pred cCccccccccccChhHHHHHHhHhCchhhhChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcce
Q psy17283 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIF 580 (635)
Q Consensus 501 NGVh~rrWl~~~np~l~~L~~~~ig~~W~~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slf 580 (635)
||||+|||+.+|||+|++|++++||++|.+|++.++.|+++++|+.|.++||++|+++|.+|++||++++|+.+||++||
T Consensus 452 NGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slf 531 (798)
T PRK14985 452 NGITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIF 531 (798)
T ss_pred CCcCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchh
Q psy17283 581 DMQNQT 586 (635)
Q Consensus 581 Dvq~~~ 586 (635)
|+|.++
T Consensus 532 dvq~kR 537 (798)
T PRK14985 532 DVQIKR 537 (798)
T ss_pred hhhHhh
Confidence 999663
No 15
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.8e-60 Score=536.94 Aligned_cols=276 Identities=43% Similarity=0.752 Sum_probs=234.7
Q ss_pred ccccCccHHHHHhhcCcceeecCCchhhHH-HHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcC
Q psy17283 292 GTLDGANVEMAEEMGNDNIFIFGMTVDQVE-ELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKW 370 (635)
Q Consensus 292 ~tlDG~~~E~~~~vG~eN~~~fG~~~~ev~-~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~ 370 (635)
+|.-|--....++ .|..-.+.+++. ..++.+.+- ...|+ +++.||++||++...||++|.+|+.
T Consensus 175 ~~~~Gk~LRLkQq-----yf~vsa~lqdiir~~~~~~~~~----~~~~~--~~~ihlNdtHpa~ai~ElmR~L~de---- 239 (713)
T PF00343_consen 175 STEEGKELRLKQQ-----YFFVSASLQDIIRRFKKSHGDL----REFPD--KVVIHLNDTHPAFAIPELMRILMDE---- 239 (713)
T ss_dssp SSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCCG----GGHHH--HEEEEEESSTTTTHHHHHHHHHHHT----
T ss_pred ccccchhhhhhhH-----hhhhhhHHHHHHHHHHHhCCCh----HHCCc--ceEEeecCCccHHHHHHHHHHHHHH----
Confidence 3344444444444 355556777764 444444333 23444 6888999999999999999998875
Q ss_pred CCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhcccccc
Q psy17283 371 DSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEE 450 (635)
Q Consensus 371 D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~ 450 (635)
++|+|++||++|+++|+||||||||||||+||++||+++||||++||++||++|+..+...+|.|.+++.+|+++++
T Consensus 240 ---~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~~ 316 (713)
T PF00343_consen 240 ---EGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIEE 316 (713)
T ss_dssp ---T---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEET
T ss_pred ---cCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhcccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceeccCccccccccccChhHHHHHHhHhCchhhh
Q psy17283 451 DGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWII 530 (635)
Q Consensus 451 ~~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNGVh~rrWl~~~np~l~~L~~~~ig~~W~~ 530 (635)
++++.||||+||+++|++|||||+|||+|+|+.+|++||++||+||+|||||||+|||+..|||+|++|++++||++|.+
T Consensus 317 ~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~ 396 (713)
T PF00343_consen 317 GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRT 396 (713)
T ss_dssp SSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGC
T ss_pred cchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhcccccc
Confidence 88899999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceeccch
Q psy17283 531 HLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQ 585 (635)
Q Consensus 531 ~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDvq~~ 585 (635)
|++.+++|.++.+|+.+.++++++|+++|.+|++|+++++|+.+||++|||+|.+
T Consensus 397 d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~r 451 (713)
T PF00343_consen 397 DLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQAR 451 (713)
T ss_dssp SGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES
T ss_pred CHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999843
No 16
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=466.18 Aligned_cols=230 Identities=47% Similarity=0.729 Sum_probs=217.8
Q ss_pred HHHhhhcCCCCCCCchhhHHHHHHhhcCCCCCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHH
Q psy17283 343 VVDQITNGFFSPENPDEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYH 422 (635)
Q Consensus 343 vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~ 422 (635)
..++||+||++...||++|.+++. ++++|++||++|+++|+||||||||||||+||++||+++||+|++||++
T Consensus 266 ~~~~lNdtHpa~~i~ElmRll~d~-------~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~ 338 (750)
T COG0058 266 LADHLNDTHPALAIPELMRLLIDE-------EGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYE 338 (750)
T ss_pred hhhhhcCCChhHhHHHHHHHHHHH-------hcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHH
Confidence 455799999999999999998776 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCccceeccC
Q psy17283 423 INFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNG 502 (635)
Q Consensus 423 in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~ki~~iTNG 502 (635)
||++|+.+++...++| ++.+++++++ |+||+||+++|++|||||+||++|+|+..|++|++++|++|+|||||
T Consensus 339 in~~~l~~~~~~~~~~--~~~~~~~i~~-----v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNG 411 (750)
T COG0058 339 INARFLPEVRLLYLGD--LIRRGSPIEE-----VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNG 411 (750)
T ss_pred HHhhhhHHHHhhcccc--ccccCCcccc-----eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCC
Confidence 9999999999999888 7888888854 99999999999999999999999999444566668999999999999
Q ss_pred ccccccccccChhHHHHHHhHhCchhhhChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceec
Q psy17283 503 ITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDM 582 (635)
Q Consensus 503 Vh~rrWl~~~np~l~~L~~~~ig~~W~~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~g~~i~p~slfDv 582 (635)
||+|||+..|||+|++++++.+|..|..+++.+..+..+++++.+.+.++++|.++|++|+++++.++|+.+||++|||+
T Consensus 412 It~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~ 491 (750)
T COG0058 412 ITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDG 491 (750)
T ss_pred cCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q psy17283 583 QNQT 586 (635)
Q Consensus 583 q~~~ 586 (635)
|.++
T Consensus 492 ~~kR 495 (750)
T COG0058 492 QARR 495 (750)
T ss_pred eehh
Confidence 9774
No 17
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=7e-40 Score=377.86 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=212.6
Q ss_pred cccCccHHHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcCCC
Q psy17283 293 TLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDS 372 (635)
Q Consensus 293 tlDG~~~E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~ 372 (635)
.|+|.+-+.+.. .+ ++||.. .+..+++.|++|. +.++++||.+...+|++|.+++.
T Consensus 218 ~LYg~D~~~Rl~--Qe--~~Lg~a--gl~~Lr~lg~~pd------------ViH~ND~Haal~~lE~~R~ll~~------ 273 (778)
T cd04299 218 RLYGGDQETRIQ--QE--ILLGIG--GVRALRALGIKPT------------VYHMNEGHAAFLGLERIRELMAE------ 273 (778)
T ss_pred CCCCCcHHHHHH--HH--HHHHHH--HHHHHHHhCCCCe------------EEEeCCCcHHHHHHHHHHHHHHH------
Confidence 467666665531 11 566655 3445566666543 23689999998888888887654
Q ss_pred CCCCChHHHHHHhhhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhcccccc-C
Q psy17283 373 ENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEE-D 451 (635)
Q Consensus 373 ~~~L~~~~A~~iv~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~-~ 451 (635)
.+++|++|+++|+.+|+||||||+|+|||+||.+|++++||+|++ .+|++.+.+..+|+... +
T Consensus 274 -~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~---------------~lgl~~~~~~~lg~e~~~~ 337 (778)
T cd04299 274 -GGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYAR---------------ELGLSRDRFLALGRENPGD 337 (778)
T ss_pred -cCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHH---------------HcCCCHHHHhhhccccccC
Confidence 258999999999999999999999999999999999999998753 47889999999999753 2
Q ss_pred CCCeeehhhhchhhcchhHhHHHHhHhhhhhhhhhhhhccCCCc---cceeccCccccccccccChhHHHHHHhHhCchh
Q psy17283 452 GDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEK---FQNKTNGITPRRWLLLCNPSLADVIAEKIGEDW 528 (635)
Q Consensus 452 ~~~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~~~~~~~p~k---i~~iTNGVh~rrWl~~~np~l~~L~~~~ig~~W 528 (635)
..+.|||+++|+++|++|||||+|||+|+| +||+++|+.+|.+ |++||||||++||+ ||++.+|+++++|++|
T Consensus 338 ~~~~~nM~~laL~~S~~vNgVS~lHg~vsr-~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~---~P~~~~l~~~~~g~~w 413 (778)
T cd04299 338 DPEPFNMAVLALRLAQRANGVSRLHGEVSR-EMFAGLWPGFPVEEVPIGHVTNGVHVPTWV---APEMRELYDRYLGGDW 413 (778)
T ss_pred ccCceeHHHHHHHhcCeeeeecHHHHHHHH-HHhhhhhccCCcccCceeceeCCcchhhhc---CHHHHHHHHHhcCcch
Confidence 346899999999999999999999999998 8999999998887 99999999999998 9999999999999999
Q ss_pred hhChhHHHHHHhhhCChHhHHHHHHHHHHHHHHHHHHHHHHh-----------------CCCcCCCcceeccchhHHH
Q psy17283 529 IIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEY-----------------HIKVNAASIFDMQNQTKWL 589 (635)
Q Consensus 529 ~~~~~~l~~l~~~~~d~~~~~el~~~k~~~K~~Li~~i~~~~-----------------g~~i~p~slfDvq~~~~W~ 589 (635)
.++++....|+...+ ++++++|++|+++|.+|+++|++++ +..+||+++++.+.++-=+
T Consensus 414 ~~~~~~~~~~~~~~~--i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~ 489 (778)
T cd04299 414 RERPTDPELWEAVDD--IPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARRFAT 489 (778)
T ss_pred hhccchHHHHhhhcC--CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeecchh
Confidence 999999889987765 5789999999999999999999887 5569999999988765444
No 18
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.92 E-value=2.2e-25 Score=253.46 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=157.9
Q ss_pred eeEEeCCcchhhhHHHHHHHhHHhh-CCCHHHHHHHhhcccceecccccccccccCCHHH-----HHhhhhhhHH-----
Q psy17283 126 VAIQLNDTHPSLAIPELMRVLVDVE-GLEWDKAWDITVKTCAYTNHTVLPEALERWPVTL-----MENLLPRHMQ----- 194 (635)
Q Consensus 126 ~~~~lNd~Hpal~i~el~r~l~d~~-g~~w~~a~~~~~~~~~~t~HT~~~e~~e~~~~~l-----~~~~lpr~~~----- 194 (635)
+...||++|+..|.++-++.|.+.+ +.+|.+..+..+.-..+ .+...+.+ |.... +.+.+.++..
T Consensus 295 i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~--~~~~~~~l--~~~K~~~K~~L~~~v~~~~~~~~~~ 370 (601)
T TIGR02094 295 IGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAI--DDIPDEEL--WEVHLKLKARLIDYIRRRLRERWLR 370 (601)
T ss_pred ccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhc--ccccHHHH--HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 7888999999999999999999888 66787533221111111 11111111 12111 1111111111
Q ss_pred ----------HHHhhccccc---cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHH
Q psy17283 195 ----------IIYHINFLHL---QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKL 261 (635)
Q Consensus 195 ----------ii~~~n~~~~---~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~ 261 (635)
..-.+|+..+ ||||||+||||+| +|++++||.+|++||. .|+||||+|||||+|.+||++|++
T Consensus 371 ~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dL-il~~i~~l~~i~~~~~---~pvq~V~~Gka~p~d~~gk~~i~~ 446 (601)
T TIGR02094 371 RGADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLARILNNPE---RPVQIVFAGKAHPADGEGKEIIQR 446 (601)
T ss_pred ccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHH-HHHHHHHHHHHhhCCC---CCeEEEEEEecCcccchHHHHHHH
Confidence 1111333222 9999999999999 9999999999999986 799999999999999999999999
Q ss_pred HHHHHHHHcCCcCcCCcceEEEE-------------------------------------ecCceeeccccCccHHHHHh
Q psy17283 262 ICSVARVVNNDPDVGDKLKVVFL-------------------------------------LNGALTIGTLDGANVEMAEE 304 (635)
Q Consensus 262 I~~~a~~innd~~i~~~lkvvfl-------------------------------------~NG~l~l~tlDG~~~E~~~~ 304 (635)
|+++++ ||.+.+ ||+|+ +||+|++||+||||.|..+
T Consensus 447 i~~la~----~~~~~~--kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~- 519 (601)
T TIGR02094 447 IVEFSK----RPEFRG--RIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD- 519 (601)
T ss_pred HHHHHh----cccCCC--CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-
Confidence 999997 688888 89998 9999999999999999985
Q ss_pred hcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCC---CCCchhhHHHHHHhhc
Q psy17283 305 MGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFS---PENPDEFKDLSDILLK 369 (635)
Q Consensus 305 vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs---~~~pe~fr~L~~~Ll~ 369 (635)
+.|||+||.+........++.+++.++|+..++ .|.+.++. .+.|..|..++..=|.
T Consensus 520 --~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~------ai~~~yy~~~~~~~p~~W~~~~k~am~ 579 (601)
T TIGR02094 520 --GDNGWAIGDGEEYDDEEEQDRLDAEALYDLLEN------EVIPLYYDRDEKGIPADWVEMMKESIA 579 (601)
T ss_pred --CCcEEEECCCccccccccccCCCHHHHHHHHHH------HHHHHHhcCCcccCcHHHHHHHHHHHh
Confidence 689999997544433334566888888775443 34444543 2337889998886554
No 19
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.11 E-value=0.0081 Score=66.76 Aligned_cols=141 Identities=16% Similarity=0.046 Sum_probs=74.5
Q ss_pred cchhhhhhcCCCeEEEeeccCCCceeEE--eeCCeeeccCcchhhh------ccCCchhhhhhhhhhhcccccccCCCCC
Q psy17283 6 CFLDSMATLGLSAYGYGIRYEYGIFAQK--IKNGEQTEEPDDWLRY------VNDGDYIQAVLDRNLAENISRVLYPNDN 77 (635)
Q Consensus 6 ~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~--i~~g~Q~e~~~~wl~~------~~~g~~~~~~~~~~~~e~it~~LY~~d~ 77 (635)
+--++++.+|..+..++.+|..+.-+.. ...-.+...+..+... ...+.+..++++.....+= ..+| ++
T Consensus 24 ~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~l~~~~~~~~-~~~~-~~- 100 (476)
T cd03791 24 ALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDR-PGLY-DD- 100 (476)
T ss_pred HHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCCceEEEEcChHHcCC-CCCC-Cc-
Confidence 3446788999999999999987642110 0000000001010000 2344555555554443321 1122 11
Q ss_pred CCCcchhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHH
Q psy17283 78 NFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKA 157 (635)
Q Consensus 78 ~~~g~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a 157 (635)
...+-..+..+..+|+.|++. ++++. . ..+.++|.||.|++++...+-+...+ ..
T Consensus 101 ~~~~~~~~~~~~~~f~~~~~~-~l~~~---------------~--~~pDviH~hd~~t~~~~~~l~~~~~~---~~---- 155 (476)
T cd03791 101 SGYDYEDNAERFALFSRAALE-LLRRL---------------G--WKPDIIHCHDWHTGLVPALLKEKYAD---PF---- 155 (476)
T ss_pred cCCCCccHHHHHHHHHHHHHH-HHHhc---------------C--CCCcEEEECchHHHHHHHHHHHhhcc---cc----
Confidence 111122345557889998886 66542 1 15589999999998877655432211 00
Q ss_pred HHHhhcccceecccccccc
Q psy17283 158 WDITVKTCAYTNHTVLPEA 176 (635)
Q Consensus 158 ~~~~~~~~~~t~HT~~~e~ 176 (635)
..+..++||.|+....+
T Consensus 156 --~~~~~~v~tiH~~~~~g 172 (476)
T cd03791 156 --FKNIKTVFTIHNLAYQG 172 (476)
T ss_pred --CCCCCEEEEeCCCCCCC
Confidence 12456899999876554
No 20
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.49 E-value=0.012 Score=65.73 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=58.3
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCc-CCc-----
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDV-GDK----- 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i-~~~----- 278 (635)
++-|+.++|...+ ++..+.++ ++. +.++++.|+..|.+. +.+.++++..++...+ .+.
T Consensus 296 ~vGrl~~~Kg~~~-li~a~~~l---~~~------~~~lvi~G~g~~~~~------~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 296 VISRLTQQKGVDL-LLAALPEL---LEL------GGQLVVLGTGDPELE------EALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred EEecCccccChHH-HHHHHHHH---HHc------CcEEEEECCCCHHHH------HHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 8899999999988 77766655 322 378999998764322 2233333332211111 111
Q ss_pred ---ceE--EEE----------------ecCceeeccccCccHHHHHhh----cCcceeecCCc
Q psy17283 279 ---LKV--VFL----------------LNGALTIGTLDGANVEMAEEM----GNDNIFIFGMT 316 (635)
Q Consensus 279 ---lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~v----G~eN~~~fG~~ 316 (635)
+.. +|+ ..|.+.++|-.|+..|...+- .+.|||+|...
T Consensus 360 ~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~ 422 (473)
T TIGR02095 360 HLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY 422 (473)
T ss_pred HHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC
Confidence 000 333 889999999888888877651 12899998753
No 21
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.50 E-value=0.043 Score=61.02 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=64.3
Q ss_pred hhccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhh
Q psy17283 386 VKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVG 465 (635)
Q Consensus 386 ~~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~ 465 (635)
+..++||.|++.+.| .|+...+..... ..+....+.. ......++|...++..
T Consensus 158 ~~~~v~tiH~~~~~g--~~~~~~~~~~~~-----------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~ 210 (476)
T cd03791 158 NIKTVFTIHNLAYQG--VFPLEALEDLGL-----------------------PWEELFHIDG--LEFYGQVNFLKAGIVY 210 (476)
T ss_pred CCCEEEEeCCCCCCC--CCCHHHHHHcCC-----------------------Cccchhhhcc--cccCCcccHHHHHHHh
Confidence 456999999998887 466555543221 0000001111 1124679999999999
Q ss_pred cchhHhHHHHhHhhhhhhh----hhhhhccCCCccceeccCccccccccc
Q psy17283 466 SHAVNGVAFIHSEIIKHDI----FRDFYELTPEKFQNKTNGITPRRWLLL 511 (635)
Q Consensus 466 S~~vNGVS~LH~ev~k~~m----f~~~~~~~p~ki~~iTNGVh~rrWl~~ 511 (635)
|..++.||.-+.+.+++.. +..+.+..+.++..|+|||+...|-..
T Consensus 211 ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~ 260 (476)
T cd03791 211 ADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPA 260 (476)
T ss_pred cCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCcc
Confidence 9999999998887775321 111223345789999999999999533
No 22
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.28 E-value=0.39 Score=53.89 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=55.5
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcC-cCCc-----
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPD-VGDK----- 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~-i~~~----- 278 (635)
++-|+.++|...+ ++..+.++ ++. +.++++.|...|.+ .+.+.++++..+.... +.++
T Consensus 287 ~vGRl~~~KG~~~-li~a~~~l---~~~------~~~lvivG~g~~~~------~~~l~~l~~~~~~~v~~~~g~~~~~~ 350 (466)
T PRK00654 287 MVSRLTEQKGLDL-VLEALPEL---LEQ------GGQLVLLGTGDPEL------EEAFRALAARYPGKVGVQIGYDEALA 350 (466)
T ss_pred EeeccccccChHH-HHHHHHHH---Hhc------CCEEEEEecCcHHH------HHHHHHHHHHCCCcEEEEEeCCHHHH
Confidence 8899999999998 77766554 221 35788888754322 1222333333221100 0111
Q ss_pred ---ceE--EEE----------------ecCceeeccccCccHHHHHhh----cCcceeecCCc
Q psy17283 279 ---LKV--VFL----------------LNGALTIGTLDGANVEMAEEM----GNDNIFIFGMT 316 (635)
Q Consensus 279 ---lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~v----G~eN~~~fG~~ 316 (635)
++. +|+ ..|.+.+.|--|+-.|...+- +++|||+|...
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~ 413 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF 413 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC
Confidence 111 333 789989999888877766541 12799999753
No 23
>PRK14098 glycogen synthase; Provisional
Probab=94.23 E-value=0.4 Score=54.45 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=54.5
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc------
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK------ 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~------ 278 (635)
++-|+.++|...+ ++..+.++ ++ .+.++|+.|...+. .-..+.++++...+-..+.+.
T Consensus 312 ~vgRl~~~KG~d~-li~a~~~l---~~------~~~~lvivG~G~~~------~~~~l~~l~~~~~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 312 VIINFDDFQGAEL-LAESLEKL---VE------LDIQLVICGSGDKE------YEKRFQDFAEEHPEQVSVQTEFTDAFF 375 (489)
T ss_pred EeccccccCcHHH-HHHHHHHH---Hh------cCcEEEEEeCCCHH------HHHHHHHHHHHCCCCEEEEEecCHHHH
Confidence 6778889998888 77766654 22 14688888864221 222333333332111111110
Q ss_pred ---ceE--EEE----------------ecCceeeccccCccHHHHHhhc--CcceeecCC
Q psy17283 279 ---LKV--VFL----------------LNGALTIGTLDGANVEMAEEMG--NDNIFIFGM 315 (635)
Q Consensus 279 ---lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG--~eN~~~fG~ 315 (635)
+.. +|+ ..|.+-++|--|+..|...++. +.|||+|..
T Consensus 376 ~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~ 435 (489)
T PRK14098 376 HLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHD 435 (489)
T ss_pred HHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCC
Confidence 000 333 6898888888888887765432 468999864
No 24
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.25 E-value=1.3 Score=42.25 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=93.0
Q ss_pred CceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHhhcccceecccccccccccCCHHHHHhhhhhhHHHHHhhcccc
Q psy17283 124 EKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 203 (635)
Q Consensus 124 ~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~~~~~~~t~HT~~~e~~e~~~~~l~~~~lpr~~~ii~~~n~~~ 203 (635)
++..+++++..++.+.+ +.. .........++.|.+.+.....+....+...+.. ...
T Consensus 51 ~~D~i~~~~~~~~~~~~-~~~-------------~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~---------~~~ 107 (229)
T cd01635 51 KPDVVHAHGYYPAPLAL-LLA-------------ARLLGIPLVLTVHGVNRSLLEGVPLSLLALSIGL---------ADK 107 (229)
T ss_pred CCCEEEEcCCCcHHHHH-HHH-------------HhhCCCCEEEEEcCccHhhcccCcHHHHHHHHhh---------cce
Confidence 55788899988887765 111 1124667799999999998877776443322221 122
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHH--HHcC---CcCcCCc
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVAR--VVNN---DPDVGDK 278 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~--~inn---d~~i~~~ 278 (635)
.++-|+..+|...+ ++..+.+..+ .. .+.++++.|+..+.+...+.+.++-. ..+ .+.. +..+..+
T Consensus 108 ~~~g~~~~~k~~~~-~~~a~~~l~~--~~-----~~~~~~i~G~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 178 (229)
T cd01635 108 VFVGRLAPEKGLDD-LIEAFALLKE--RG-----PDLKLVIAGDGPEREYLEELLAALLL-LDRVIFLGGLDPEELLALL 178 (229)
T ss_pred EEEEeecccCCHHH-HHHHHHHHHH--hC-----CCeEEEEEeCCCChHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHH
Confidence 27889999998887 5555555422 11 35799999999887766653211100 000 0000 0111111
Q ss_pred ce--EEEE----------------ecCceeeccccCccHHHHHhhcCcceeec
Q psy17283 279 LK--VVFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIF 313 (635)
Q Consensus 279 lk--vvfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~f 313 (635)
++ -+++ ..|.+.++|-+|+..|..++ +++||+|
T Consensus 179 ~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~--~~~g~~~ 229 (229)
T cd01635 179 LAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVED--GLTGLLV 229 (229)
T ss_pred hhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEEEC--CCceEEC
Confidence 11 1222 77999999999998887554 6777764
No 25
>PRK14098 glycogen synthase; Provisional
Probab=89.94 E-value=0.47 Score=53.90 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=61.7
Q ss_pred hccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhc
Q psy17283 387 KTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGS 466 (635)
Q Consensus 387 ~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S 466 (635)
--++||.|+...-| .||...+..++|..+ +..+.. ..+.+|+...+++.|
T Consensus 172 ~~~V~TiHn~~~qg--~~~~~~~~~~~~~~~------------------------~~~~~~----~~~~~n~lk~~i~~a 221 (489)
T PRK14098 172 IKTVLTIHNVYRQG--VLPFKVFQKLLPEEV------------------------CSGLHR----EGDEVNMLYTGVEHA 221 (489)
T ss_pred CCEEEEcCCCcccC--CCCHHHHHHhCCHHh------------------------hhhhhh----cCCcccHHHHHHHhc
Confidence 35899999987666 477776665554311 001100 135689999999999
Q ss_pred chhHhHHHHhHhhhhhhhh-----hhhhccCCCccceeccCccccccc
Q psy17283 467 HAVNGVAFIHSEIIKHDIF-----RDFYELTPEKFQNKTNGITPRRWL 509 (635)
Q Consensus 467 ~~vNGVS~LH~ev~k~~mf-----~~~~~~~p~ki~~iTNGVh~rrWl 509 (635)
..|+.||.-..+-+++... +......+.++.-|.|||+...|-
T Consensus 222 d~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~ 269 (489)
T PRK14098 222 DLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWN 269 (489)
T ss_pred CcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccC
Confidence 9999999977766552211 111112367899999999999993
No 26
>PRK00654 glgA glycogen synthase; Provisional
Probab=89.74 E-value=0.24 Score=55.52 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred CeeehhhhchhhcchhHhHHHHhHhhhhhhhhh----hhhccCCCccceeccCcccccccc
Q psy17283 454 KRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFR----DFYELTPEKFQNKTNGITPRRWLL 510 (635)
Q Consensus 454 ~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~----~~~~~~p~ki~~iTNGVh~rrWl~ 510 (635)
..+++...+++.|..+++||.-+.+-+++..|. ......+.|+.-|.|||+...|-.
T Consensus 186 ~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p 246 (466)
T PRK00654 186 GQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNP 246 (466)
T ss_pred CcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCC
Confidence 458888899999999999999887766534432 123345678999999999999953
No 27
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=88.42 E-value=0.34 Score=54.20 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=60.5
Q ss_pred hccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhc
Q psy17283 387 KTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGS 466 (635)
Q Consensus 387 ~~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S 466 (635)
..++||.|++...| .||.+.+.. + +.+.+.+.. ...+ ..+.++|...++..|
T Consensus 155 ~~~v~TiH~~~~~g--~~~~~~~~~-~----------------------~~~~~~~~~-~~~~--~~~~~~~~k~~~~~a 206 (473)
T TIGR02095 155 IKTVFTIHNLAYQG--VFPADDFSE-L----------------------GLPPEYFHM-EGLE--FYGRVNFLKGGIVYA 206 (473)
T ss_pred CCEEEEcCCCccCC--cCCHHHHHH-c----------------------CCChHHcCc-hhhh--cCCchHHHHHHHHhC
Confidence 45799999987766 466655542 1 112111110 1111 124789999999999
Q ss_pred chhHhHHHHhHhhhhhhhhh----hhhccCCCccceeccCccccccc
Q psy17283 467 HAVNGVAFIHSEIIKHDIFR----DFYELTPEKFQNKTNGITPRRWL 509 (635)
Q Consensus 467 ~~vNGVS~LH~ev~k~~mf~----~~~~~~p~ki~~iTNGVh~rrWl 509 (635)
..++.||.-+.+-+.+..+. ......+.++..|.|||+..+|-
T Consensus 207 d~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~ 253 (473)
T TIGR02095 207 DRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWN 253 (473)
T ss_pred CcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccC
Confidence 99999999877665422111 11122467899999999999994
No 28
>PRK14099 glycogen synthase; Provisional
Probab=87.36 E-value=0.94 Score=51.41 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=41.0
Q ss_pred CeeehhhhchhhcchhHhHHHHhHhhhhhhhhh-----hhhccCCCccceeccCccccccc
Q psy17283 454 KRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFR-----DFYELTPEKFQNKTNGITPRRWL 509 (635)
Q Consensus 454 ~~~~Ma~Lal~~S~~vNGVS~LH~ev~k~~mf~-----~~~~~~p~ki~~iTNGVh~rrWl 509 (635)
+.++|...+++.|..++.||.-..+-++ +.+. ...+..+.++.-|.|||+...|-
T Consensus 198 ~~~~~~k~~i~~ad~vitVS~~~a~ei~-~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~ 257 (485)
T PRK14099 198 GGIGYLKAGLQLADRITTVSPTYALEIQ-GPEAGMGLDGLLRQRADRLSGILNGIDTAVWN 257 (485)
T ss_pred CCccHHHHHHHhcCeeeecChhHHHHHh-cccCCcChHHHHHhhCCCeEEEecCCchhhcc
Confidence 4568888899999999999997776554 3211 12233467799999999999993
No 29
>PLN02316 synthase/transferase
Probab=79.02 E-value=41 Score=42.02 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=58.3
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCc----CCcc-
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDV----GDKL- 279 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i----~~~l- 279 (635)
++-|+++.|-..+ ++..+.++.+ .+.++|+.|.. |....-..+-++..++.........+ .+.+
T Consensus 845 ~VGRL~~qKGvdl-Li~Al~~ll~---------~~~qlVIvG~G-pd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~la 913 (1036)
T PLN02316 845 IITRLTHQKGIHL-IKHAIWRTLE---------RNGQVVLLGSA-PDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLS 913 (1036)
T ss_pred EEeccccccCHHH-HHHHHHHHhh---------cCcEEEEEeCC-CCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHH
Confidence 8899999999988 7777665522 13577777754 33222333444443332111110100 1101
Q ss_pred ----eE--EEE----------------ecCceeeccccCccHHHHHhh----------c-CcceeecCC
Q psy17283 280 ----KV--VFL----------------LNGALTIGTLDGANVEMAEEM----------G-NDNIFIFGM 315 (635)
Q Consensus 280 ----kv--vfl----------------~NG~l~l~tlDG~~~E~~~~v----------G-~eN~~~fG~ 315 (635)
.. +|+ ..|.+-+.|--|+-.|...+. | +.|||+|..
T Consensus 914 h~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~ 982 (1036)
T PLN02316 914 HLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDG 982 (1036)
T ss_pred HHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCC
Confidence 00 333 789888999999999987663 1 369999975
No 30
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=71.90 E-value=24 Score=37.65 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=65.1
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHH-Hc--CCcCcCCc---
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARV-VN--NDPDVGDK--- 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~-in--nd~~i~~~--- 278 (635)
++-|+.+.|.+.+ ++..+.++.+- .+ ...+..+++.|...+......+....+.++++. .+ +...+.|.
T Consensus 216 ~~grl~~~Kg~~~-ll~a~~~l~~~--~~--~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~ 290 (392)
T cd03805 216 SINRFERKKNIAL-AIEAFAILKDK--LA--EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISD 290 (392)
T ss_pred EEeeecccCChHH-HHHHHHHHHhh--cc--cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCCh
Confidence 7788999999988 77766665322 10 013578888887766544443444444444443 21 11122222
Q ss_pred ------c---eEEEE---------------ecCceeeccccCccHHHHHhhcCcceeecCCchhhH
Q psy17283 279 ------L---KVVFL---------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQV 320 (635)
Q Consensus 279 ------l---kvvfl---------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~~~ev 320 (635)
+ .++++ ..|.+.++|.-|+..|+..+ +.+|+++..+.+++
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~--~~~g~~~~~~~~~~ 354 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVD--GETGFLCEPTPEEF 354 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhcc--CCceEEeCCCHHHH
Confidence 1 12221 88999999988888887774 67888876554443
No 31
>PLN02939 transferase, transferring glycosyl groups
Probab=68.08 E-value=3.5 Score=50.47 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=63.2
Q ss_pred ccccccccccchhhccCChHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHhccccccCCCCeeehhhhchhhcc
Q psy17283 388 TCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSH 467 (635)
Q Consensus 388 ~~~fTtHTpvpeglE~f~~~L~~~~lpr~~~ii~~in~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~Lal~~S~ 467 (635)
.++||.|-..--| .||.+.+. .+|++.+.+.+....+....+.+|+--.|+..|.
T Consensus 641 ktVfTIHNl~yQG--~f~~~~l~-----------------------~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD 695 (977)
T PLN02939 641 RICFTCHNFEYQG--TAPASDLA-----------------------SCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSN 695 (977)
T ss_pred cEEEEeCCCcCCC--cCCHHHHH-----------------------HcCCCHHHccChhhhhhccCCchHHHHHHHHhCC
Confidence 4799999997666 55655443 1234443332111111112467899999999999
Q ss_pred hhHhHHHHhHhhhhhhhhh---hhhccCCCccceeccCccccccc
Q psy17283 468 AVNGVAFIHSEIIKHDIFR---DFYELTPEKFQNKTNGITPRRWL 509 (635)
Q Consensus 468 ~vNGVS~LH~ev~k~~mf~---~~~~~~p~ki~~iTNGVh~rrWl 509 (635)
.|+.||.-+.+-..+.-.. ......+.++.-|-|||+...|-
T Consensus 696 ~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wn 740 (977)
T PLN02939 696 IVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWN 740 (977)
T ss_pred eeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcC
Confidence 9999999777665532111 22345567899999999999994
No 32
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=54.66 E-value=71 Score=34.38 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=59.6
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCcCcCCc----
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAP-GYYTAKKIIKLICSVARVVNNDPDVGDK---- 278 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P-~y~~ak~iIk~I~~~a~~innd~~i~~~---- 278 (635)
+++-|+..+|...+ ++..+.++. ++.|+ ....++++|.+.+ +...-.++.+++.+.. +++...+.|+
T Consensus 223 ~~~G~l~~~K~~~~-li~a~~~l~--~~~~~---~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~--l~~~v~~~g~~~~~ 294 (405)
T TIGR03449 223 AFVGRIQPLKAPDV-LLRAVAELL--DRDPD---RNLRVIVVGGPSGSGLATPDALIELAAELG--IADRVRFLPPRPPE 294 (405)
T ss_pred EEecCCCcccCHHH-HHHHHHHHH--hhCCC---cceEEEEEeCCCCCcchHHHHHHHHHHHcC--CCceEEECCCCCHH
Confidence 38889999998877 555554442 33443 3467888886543 3122233444443321 1111222222
Q ss_pred -----ceE--EEE----------------ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 279 -----LKV--VFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 279 -----lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
++. +|+ .-|.+.++|-.|+..|+.++ +.+|+++-.
T Consensus 295 ~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~--~~~g~~~~~ 352 (405)
T TIGR03449 295 ELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVAD--GETGLLVDG 352 (405)
T ss_pred HHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhcc--CCceEECCC
Confidence 111 222 78999999999998888775 788888854
No 33
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=51.43 E-value=2.5e+02 Score=31.64 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=37.2
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCH-HHHHHHHHHHHHHHHHc
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYY-TAKKIIKLICSVARVVN 270 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~-~ak~iIk~I~~~a~~in 270 (635)
++-|+...|...+ ++....++ ++..|+... .++++..|.+.-++. .-.++.+.+.+++..+|
T Consensus 269 ~vgRl~~~Kgi~~-ll~A~~~l--l~~~p~~~~-~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in 331 (460)
T cd03788 269 GVDRLDYSKGIPE-RLLAFERL--LERYPEWRG-KVVLVQIAVPSRTDVPEYQELRREVEELVGRIN 331 (460)
T ss_pred EecCccccCCHHH-HHHHHHHH--HHhChhhcC-CEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999998877 66666655 344554211 245555554432332 33456677777777666
No 34
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=51.39 E-value=2.2e+02 Score=32.26 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=37.0
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCC-HHHHHHHHHHHHHHHHHcC
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGY-YTAKKIIKLICSVARVVNN 271 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y-~~ak~iIk~I~~~a~~inn 271 (635)
.+-|++.-|.... +|....++ +++.|+..- .+++|..|-+.-++ ..-.++-+.+.+++..||.
T Consensus 264 ~VgRLd~~KGi~~-ll~A~~~l--l~~~p~~~~-~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~ 327 (456)
T TIGR02400 264 GVDRLDYSKGLPE-RLLAFERF--LEEHPEWRG-KVVLVQIAVPSRGDVPEYQQLRRQVEELVGRING 327 (456)
T ss_pred EccccccccCHHH-HHHHHHHH--HHhCccccC-ceEEEEEecCCccCchHHHHHHHHHHHHHHHHHh
Confidence 6678888888777 77777666 455665321 24455444332222 2234567777777766664
No 35
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=48.24 E-value=70 Score=34.73 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=60.3
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCC-CCCHHHHHHHHHHHHHHHHHcCCcCcCCcce--
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAA-PGYYTAKKIIKLICSVARVVNNDPDVGDKLK-- 280 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~-P~y~~ak~iIk~I~~~a~~innd~~i~~~lk-- 280 (635)
+++-|+.++|.... ++..+.++. ++.| ...+++.|... +.+.......+.+.++++.++....+.|.+.
T Consensus 197 l~~Grl~~~Kg~~~-Li~A~~~l~--~~~p-----~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~ 268 (380)
T PRK15484 197 LYAGRISPDKGILL-LMQAFEKLA--TAHS-----NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPE 268 (380)
T ss_pred EEeccCccccCHHH-HHHHHHHHH--HhCC-----CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHH
Confidence 37889999999887 666555442 2333 35677766543 2221222344455555554433323333321
Q ss_pred -------E--EEE-----------------ecCceeeccccCccHHHHHhhcCcceeec
Q psy17283 281 -------V--VFL-----------------LNGALTIGTLDGANVEMAEEMGNDNIFIF 313 (635)
Q Consensus 281 -------v--vfl-----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~f 313 (635)
. ||+ .-|.+.++|--|+..|+.++ ++|||++
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~--~~~G~~l 325 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLE--GITGYHL 325 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhccc--CCceEEE
Confidence 0 333 67999999999999998876 7899855
No 36
>PLN00142 sucrose synthase
Probab=46.18 E-value=78 Score=38.65 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=62.9
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCC---CHHHHHHHHHHHHHHHHHcCCcC--cC-
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPG---YYTAKKIIKLICSVARVVNNDPD--VG- 276 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~---y~~ak~iIk~I~~~a~~innd~~--i~- 276 (635)
.+++=|+.++|.... ++....+..++..+ ...+|.||...|. +....+.++.+.++++..+-... +-
T Consensus 576 Il~VGRL~~~KGid~-LIeA~a~l~~l~~~------~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG 648 (815)
T PLN00142 576 IFSMARLDRVKNLTG-LVEWYGKNKRLREL------VNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIA 648 (815)
T ss_pred EEEEecCcccCCHHH-HHHHHHHHHHhCCC------cEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcC
Confidence 348999999999987 66665544332211 2334455542332 33333444555555554331111 11
Q ss_pred ---Cc---------c---eEEEE----------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 277 ---DK---------L---KVVFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 277 ---~~---------l---kvvfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
+. + .-||+ ..|.+.++|-.|+..|+..+ ++|||++-..
T Consensus 649 ~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~d--G~tG~LV~P~ 717 (815)
T PLN00142 649 AQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVD--GVSGFHIDPY 717 (815)
T ss_pred CcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--CCcEEEeCCC
Confidence 11 1 12666 78999999999999999886 8999998753
No 37
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.99 E-value=2.9e+02 Score=31.07 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=59.0
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCC------c
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD------K 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~------~ 278 (635)
++-|+.+.|.... ++..+..+ ++. .....+++.|.........+++-+++.++.- ++...+.| +
T Consensus 298 ~vGrl~~~Kg~~~-li~a~~~l---~~~----~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l--~~~V~f~G~~~v~~~ 367 (475)
T cd03813 298 LIGRVVPIKDIKT-FIRAAAIV---RKK----IPDAEGWVIGPTDEDPEYAEECRELVESLGL--EDNVKFTGFQNVKEY 367 (475)
T ss_pred EEeccccccCHHH-HHHHHHHH---HHh----CCCeEEEEECCCCcChHHHHHHHHHHHHhCC--CCeEEEcCCccHHHH
Confidence 8889999999877 65555444 322 1346788888654333444555555544331 11111222 1
Q ss_pred ---ceEEEE---------------ecCceeeccccCccHHHHHhhc----CcceeecCC
Q psy17283 279 ---LKVVFL---------------LNGALTIGTLDGANVEMAEEMG----NDNIFIFGM 315 (635)
Q Consensus 279 ---lkvvfl---------------~NG~l~l~tlDG~~~E~~~~vG----~eN~~~fG~ 315 (635)
..++.+ .-|.+.++|--|+..|+.++.+ +.+|+++-.
T Consensus 368 l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 368 LPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred HHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECC
Confidence 222222 8899999998898888877532 247777754
No 38
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=43.79 E-value=22 Score=36.60 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=68.5
Q ss_pred ccchhhhhhcCCCeEEEeeccCCCceeEE-----e-e-----CCeeeccCcchhhh----ccCCchhhhhhhhhhhcccc
Q psy17283 5 ACFLDSMATLGLSAYGYGIRYEYGIFAQK-----I-K-----NGEQTEEPDDWLRY----VNDGDYIQAVLDRNLAENIS 69 (635)
Q Consensus 5 ~~~l~s~a~l~~p~~g~gl~Y~~G~f~Q~-----i-~-----~g~Q~e~~~~wl~~----~~~g~~~~~~~~~~~~e~it 69 (635)
++.-++++.+|..+..+..+|.. +.... + . .| +++... |... ....++..++++...--.-.
T Consensus 23 ~~L~kaL~~~G~~V~Vi~P~y~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~~~~v~~~~~~~v~v~~i~~~~~f~r~ 99 (245)
T PF08323_consen 23 GSLPKALAKQGHDVRVIMPKYGF-IDEEYFQLEPVRRLSVPFGG-PVPVGV-WYEVRVYRYPVDGVPVYFIDNPEYFDRP 99 (245)
T ss_dssp HHHHHHHHHTT-EEEEEEE-THH-HHHHCTTEEEEEEES-STTC-EEEEE-----EEEEEEEETTEEEEEEESHHHHGSS
T ss_pred HHHHHHHHhcCCeEEEEEccchh-hhhhhhcceEEEEecccccc-cccccc-ceEEEEEEEEcCCccEEEecChhhcccc
Confidence 34457889999999999998833 22211 1 0 12 332222 2111 12334444444443322222
Q ss_pred cccCCCC-CCCCcchhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHH
Q psy17283 70 RVLYPND-NNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVD 148 (635)
Q Consensus 70 ~~LY~~d-~~~~g~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d 148 (635)
.+|++. ..+.....| -.+|+.|++. ++++. .. .+.++|.||-|++++.+.| |....
T Consensus 100 -~iY~~~~~~~~d~~~r---f~~fs~a~le-~~~~l---------------~~--~pDIIH~hDW~tal~p~~l-k~~~~ 156 (245)
T PF08323_consen 100 -GIYGDNGGDYPDNAER---FAFFSRAALE-LLKKL---------------GW--KPDIIHCHDWHTALAPLYL-KERYQ 156 (245)
T ss_dssp -SSSBSTSSBHTTHHHH---HHHHHHHHHH-HHCTC---------------T---S-SEEEEECGGGTTHHHHH-HHCCS
T ss_pred -ceeccCCCcchhHHHH---HHHHHHHHHH-HHHhh---------------CC--CCCEEEecCchHHHHHHHh-ccccc
Confidence 288652 111114455 5688888875 54431 11 4588899999999997665 43211
Q ss_pred hhCCCHHHHHHHhhcccceecccccccc
Q psy17283 149 VEGLEWDKAWDITVKTCAYTNHTVLPEA 176 (635)
Q Consensus 149 ~~g~~w~~a~~~~~~~~~~t~HT~~~e~ 176 (635)
.. ..+ -...++||.|...-.|
T Consensus 157 -~~----~~~--~~~~~v~TIHN~~yqg 177 (245)
T PF08323_consen 157 -QD----PFF--ANIPTVFTIHNLEYQG 177 (245)
T ss_dssp -S------------SEEEEEESSTT---
T ss_pred -cc----ccc--ccceeEEEEcccccCC
Confidence 01 111 2567799999865554
No 39
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=43.23 E-value=46 Score=35.34 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=57.9
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc----
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK---- 278 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~---- 278 (635)
++++-|+.++|...+ ++..+.++ .. +.++++.|..........++.+++..+...-++...+.++
T Consensus 204 i~~~Grl~~~Kg~~~-li~a~~~l---~~-------~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 204 ILFVGRITRQKGVPH-LLDAVHYI---PK-------DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred EEEEcccccccCHHH-HHHHHHHH---hh-------cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 348889999999887 66665544 21 2345555443333333334444444433211111112221
Q ss_pred -----ceE--EEE----------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 279 -----LKV--VFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 279 -----lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
+.. +|+ ..|.+.++|-.|+..|+.++ ++||+++-..
T Consensus 273 ~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~--~~~G~~~~~~ 331 (388)
T TIGR02149 273 ELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVD--GETGFLVPPD 331 (388)
T ss_pred HHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC--CCceEEcCCC
Confidence 111 333 78999999999998888875 7889998643
No 40
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=40.97 E-value=96 Score=37.75 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=65.5
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCC---CCHHHHHHHHHHHHHHHHHc--CCcCcCC
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAP---GYYTAKKIIKLICSVARVVN--NDPDVGD 277 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P---~y~~ak~iIk~I~~~a~~in--nd~~i~~ 277 (635)
.+++=|+.+-|.... ++....+..++.. ...-+|.||...+ .|...+..++.+.++++..+ +...+-|
T Consensus 553 Il~VGRL~~~KGid~-LIeA~~~l~~l~~------~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG 625 (784)
T TIGR02470 553 IFSMARLDRVKNLTG-LVECYGRSPKLRE------LVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIG 625 (784)
T ss_pred EEEEeCCCccCCHHH-HHHHHHHhHhhCC------CeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEcc
Confidence 348999999999877 5555544333322 2344566776542 24444455666666555543 1111111
Q ss_pred ----------cce------EEEE----------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 278 ----------KLK------VVFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 278 ----------~lk------vvfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
..+ -||+ .-|.+.++|-.|+-.|+..+ ++|||++-..
T Consensus 626 ~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d--g~tGfLVdp~ 694 (784)
T TIGR02470 626 AQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD--GVSGFHIDPY 694 (784)
T ss_pred CcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--CCcEEEeCCC
Confidence 111 2666 89999999999999998886 8999999643
No 41
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=34.33 E-value=2.1e+02 Score=28.76 Aligned_cols=99 Identities=17% Similarity=0.047 Sum_probs=59.6
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCC-----
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD----- 277 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~----- 277 (635)
++++-|+..+|+..+ ++..+....+ ++ .+.++++.|...+.+...+. ++..... .+...+.|
T Consensus 191 i~~~G~~~~~k~~~~-li~~~~~l~~--~~-----~~~~l~i~G~~~~~~~~~~~---~~~~~~~--~~~v~~~g~~~~~ 257 (359)
T cd03808 191 FLFVARLLKDKGIDE-LLEAARILKA--KG-----PNVRLLLVGDGDEENPAAIL---EIEKLGL--EGRVEFLGFRDDV 257 (359)
T ss_pred EEEEeccccccCHHH-HHHHHHHHHh--cC-----CCeEEEEEcCCCcchhhHHH---HHHhcCC--cceEEEeeccccH
Confidence 338889999998877 6665544422 12 35789999998877766543 1111110 00001111
Q ss_pred --c---ceEEEE---------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 278 --K---LKVVFL---------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 278 --~---lkvvfl---------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
+ ..+++. ..|.+.++|-.|+..|..++ +++|+++..+
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~--~~~g~~~~~~ 314 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVID--GVNGFLVPPG 314 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhhc--CcceEEECCC
Confidence 1 122222 88999999988888887775 7788888643
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.16 E-value=1.3e+02 Score=36.25 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=58.5
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc------
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK------ 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~------ 278 (635)
++-|+.+.|.+.+ ++.....+. ++.| ...+++.|.. | . -.++-+++.++. +.+...+-|.
T Consensus 522 ~VGRL~~~KG~~~-LI~A~a~l~--~~~p-----~~~LvIvG~G-~--~-~~~L~~l~~~lg--L~~~V~flG~~~dv~~ 587 (694)
T PRK15179 522 TVMRVDDNKRPFL-WVEAAQRFA--ASHP-----KVRFIMVGGG-P--L-LESVREFAQRLG--MGERILFTGLSRRVGY 587 (694)
T ss_pred EEEeCCccCCHHH-HHHHHHHHH--HHCc-----CeEEEEEccC-c--c-hHHHHHHHHHcC--CCCcEEEcCCcchHHH
Confidence 7889999999998 666665552 3343 3567777753 1 1 122333333321 1111222222
Q ss_pred -ceE--EEE----------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 279 -LKV--VFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 279 -lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
++. ||+ ..|.+.++|.-|+..|+..+ ++||+++..+
T Consensus 588 ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d--g~~GlLv~~~ 642 (694)
T PRK15179 588 WLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE--GVTGLTLPAD 642 (694)
T ss_pred HHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccC--CCCEEEeCCC
Confidence 111 333 88999999998999998876 8899998644
No 43
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=32.33 E-value=2e+02 Score=31.77 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=26.9
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCC
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAA 249 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~ 249 (635)
++=|+...|+..+ ++.....+.+ +.|+....+..++++|...
T Consensus 242 ~vgr~~~~K~~~~-li~A~~~l~~--~~~~~~~~~~~lvivG~~~ 283 (419)
T cd03806 242 SIAQFRPEKNHPL-QLRAFAKLLK--RLPEEIKEKIKLVLIGSCR 283 (419)
T ss_pred EEEeecCCCCHHH-HHHHHHHHHH--hCcccccCceEEEEEcCCC
Confidence 8889999999998 7777766643 2232111245677776643
No 44
>KOG2941|consensus
Probab=30.75 E-value=59 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHhhcCcceeecCCchhhHHHHHHcCCCCcccccCChhHHHHHHhhhcCCCCCCCchhhHHHHHHhhcCCCCCCCChH
Q psy17283 300 EMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDSENPIDSL 379 (635)
Q Consensus 300 E~~~~vG~eN~~~fG~~~~ev~~l~~~gy~~~~~Y~~~~~l~~vld~L~dG~fs~~~pe~fr~L~~~Ll~~D~~~~L~~~ 379 (635)
|..++ +|||++|+++.+-. +-+..+-.|++ +..+....+-..+++. ..+.|+
T Consensus 378 ELVkh--~eNGlvF~Ds~eLa---------------------~ql~~lf~~fp--~~a~~l~~lkkn~~e~---~e~RW~ 429 (444)
T KOG2941|consen 378 ELVKH--GENGLVFEDSEELA---------------------EQLQMLFKNFP--DNADELNQLKKNLREE---QELRWD 429 (444)
T ss_pred HHHhc--CCCceEeccHHHHH---------------------HHHHHHHhcCC--CCHHHHHHHHHhhHHH---HhhhHH
Confidence 67776 89999998763322 22334555655 4455556655555542 457899
Q ss_pred HHHHHhhh
Q psy17283 380 QAWDITVK 387 (635)
Q Consensus 380 ~A~~iv~~ 387 (635)
+-|+.|..
T Consensus 430 ~~W~~~~~ 437 (444)
T KOG2941|consen 430 ESWERTAL 437 (444)
T ss_pred HHHHHhhh
Confidence 99986654
No 45
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=30.60 E-value=97 Score=28.81 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=57.5
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc-----
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK----- 278 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~----- 278 (635)
+++-|+..+|+..+ ++..+.++.+=+ . .+..+++.|... ..+.+..++....- .+...+-+.
T Consensus 19 l~~g~~~~~K~~~~-li~a~~~l~~~~-~-----~~~~l~i~G~~~----~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 19 LFIGRLDPEKGIDL-LIEAFKKLKEKK-N-----PNYKLVIVGDGE----YKKELKNLIEKLNL--KENIIFLGYVPDDE 85 (172)
T ss_dssp EEESESSGGGTHHH-HHHHHHHHHHHH-H-----TTEEEEEESHCC----HHHHHHHHHHHTTC--GTTEEEEESHSHHH
T ss_pred EEEecCccccCHHH-HHHHHHHHHhhc-C-----CCeEEEEEcccc----cccccccccccccc--cccccccccccccc
Confidence 38899999999999 877777664321 2 357889999211 22223333332211 111111111
Q ss_pred -------ceEEEE---------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 279 -------LKVVFL---------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 279 -------lkvvfl---------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
..+++. ..|.+.|++..|...|+..+ +.||+++-..
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~--~~~g~~~~~~ 143 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND--GVNGFLFDPN 143 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT--TTSEEEESTT
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeecc--ccceEEeCCC
Confidence 112222 89999999998988888887 6688888543
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=29.31 E-value=1.3e+02 Score=32.58 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=24.2
Q ss_pred ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 285 LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 285 ~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
.-|.+.|+|-.|+..|+..+ ++||+++-.
T Consensus 322 A~G~PVIas~~~g~~e~i~~--~~~G~lv~~ 350 (396)
T cd03818 322 ACGCLVVGSDTAPVREVITD--GENGLLVDF 350 (396)
T ss_pred HCCCCEEEcCCCCchhhccc--CCceEEcCC
Confidence 68999999988988888775 789998864
No 47
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=28.53 E-value=1.8e+02 Score=29.64 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc----
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK---- 278 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~---- 278 (635)
++++-|+.+.|...+ ++..+.++.+- . .+.++++.|+..+.+......+ +.+... .+...+.|.
T Consensus 206 i~~~G~~~~~K~~~~-li~a~~~l~~~--~-----~~~~l~i~G~~~~~~~~~~~~~--~~~~~~--~~~v~~~g~~~~~ 273 (375)
T cd03821 206 ILFLGRLHPKKGLDL-LIEAFAKLAER--F-----PDWHLVIAGPDEGGYRAELKQI--AAALGL--EDRVTFTGMLYGE 273 (375)
T ss_pred EEEEeCcchhcCHHH-HHHHHHHhhhh--c-----CCeEEEEECCCCcchHHHHHHH--HHhcCc--cceEEEcCCCChH
Confidence 338889999999887 66666554321 2 3578999998766655443322 111110 000111111
Q ss_pred --------ceEEEE---------------ecCceeeccccCccHHHHHhhcCcceeecCCchhh
Q psy17283 279 --------LKVVFL---------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQ 319 (635)
Q Consensus 279 --------lkvvfl---------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~~~e 319 (635)
..++++ ..|.+.++|-.|+..|+..+ .++++...+.++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~---~~~~~~~~~~~~ 334 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY---GCGWVVDDDVDA 334 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc---CceEEeCCChHH
Confidence 122222 88999999988888777763 667776655433
No 48
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=28.11 E-value=2.2e+02 Score=29.35 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=62.7
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc------
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK------ 278 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~------ 278 (635)
++-|+...|.+.. ++..+..+ ++. ..+..+++.|...+.....+.+.+++.+... .+...+-|.
T Consensus 190 ~~Gr~~~~Kg~~~-li~~~~~l---~~~----~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~--~~~v~~~g~~~~~~~ 259 (355)
T cd03819 190 LPGRLTRWKGQEV-FIEALARL---KKD----DPDVHLLIVGDAQGRRFYYAELLELIKRLGL--QDRVTFVGHCSDMPA 259 (355)
T ss_pred EeeccccccCHHH-HHHHHHHH---Hhc----CCCeEEEEEECCcccchHHHHHHHHHHHcCC--cceEEEcCCcccHHH
Confidence 8899999999988 66555544 332 1467899999877665555555555544321 111222222
Q ss_pred -ceE--EEE-----------------ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 279 -LKV--VFL-----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 279 -lkv--vfl-----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
++. +|+ ..|.+.++|-.|+..|...+ +.+|+++-.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~--~~~g~~~~~ 314 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVRP--GETGLLVPP 314 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhC--CCceEEeCC
Confidence 111 222 57899999988888888875 568888753
No 49
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=27.85 E-value=2.6e+02 Score=29.85 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=57.7
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCC------
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD------ 277 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~------ 277 (635)
+++-|+...|...+ ++..+..+.+. .| ..+++++|...+.+....++.+.+.+... +..+..+-+
T Consensus 194 ~~vgrl~~~Kg~~~-ll~a~~~l~~~--~~-----~~~l~i~G~g~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 264 (372)
T cd03792 194 TQVSRFDPWKDPFG-VIDAYRKVKER--VP-----DPQLVLVGSGATDDPEGWIVYEEVLEYAE-GDPDIHVLTLPPVSD 264 (372)
T ss_pred EEEeccccccCcHH-HHHHHHHHHhh--CC-----CCEEEEEeCCCCCCchhHHHHHHHHHHhC-CCCCeEEEecCCCCH
Confidence 38889999999988 76666555321 22 35777888765544333444444333221 111111211
Q ss_pred -----cceE--EEE----------------ecCceeeccccCccHHHHHhhcCcceeecC
Q psy17283 278 -----KLKV--VFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFG 314 (635)
Q Consensus 278 -----~lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG 314 (635)
+++. +|+ ..|.+.++|-.|+..|...+ +.+|+++.
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~--~~~g~~~~ 322 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIED--GETGFLVD 322 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhccc--CCceEEeC
Confidence 1111 333 77888999877777776654 77888775
No 50
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=26.54 E-value=1.8e+02 Score=30.76 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=58.5
Q ss_pred cccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCC-------
Q psy17283 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD------- 277 (635)
Q Consensus 205 ~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~------- 277 (635)
++-|+.+.|.+.+ ++..+..+. +..|+. ..+.++++.|.. |. -.++.+++.+..- .+...+.|
T Consensus 199 ~vGrl~~~Kg~~~-li~a~~~l~--~~~~~~-~~~~~l~i~G~g-~~---~~~~~~~~~~~~~--~~~v~~~g~~~~~~~ 268 (374)
T TIGR03088 199 TVGRLQAVKDQPT-LVRAFALLV--RQLPEG-AERLRLVIVGDG-PA---RGACEQMVRAAGL--AHLVWLPGERDDVPA 268 (374)
T ss_pred EEecCCcccCHHH-HHHHHHHHH--HhCccc-ccceEEEEecCC-ch---HHHHHHHHHHcCC--cceEEEcCCcCCHHH
Confidence 7889999999987 666665552 223321 135788888852 21 1333444433221 11111111
Q ss_pred cceE--EEE----------------ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 278 KLKV--VFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 278 ~lkv--vfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
+++. +|+ ..|.+.++|--|...|+.++ +.+|+++..
T Consensus 269 ~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~--~~~g~~~~~ 322 (374)
T TIGR03088 269 LMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQH--GVTGALVPP 322 (374)
T ss_pred HHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcC--CCceEEeCC
Confidence 1111 233 88999999999999998885 788998864
No 51
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=25.70 E-value=1.1e+02 Score=34.06 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.1
Q ss_pred ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 285 LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 285 ~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
.-|.+.++|--|+..|+..+ ++||+++-.
T Consensus 362 a~G~PvV~s~~gg~~eiv~~--~~~G~lv~~ 390 (439)
T TIGR02472 362 ACGLPIVATDDGGPRDIIAN--CRNGLLVDV 390 (439)
T ss_pred HhCCCEEEeCCCCcHHHhcC--CCcEEEeCC
Confidence 78999999999999998875 789999864
No 52
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.32 E-value=1.7e+02 Score=30.07 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=54.2
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCcCCc----
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK---- 278 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~ak~iIk~I~~~a~~innd~~i~~~---- 278 (635)
.+++-|+.++|+... ++..+..+. +..++++|..-.. ..+.+++..... .+...+.|.
T Consensus 194 i~~~G~~~~~K~~~~-li~a~~~l~-----------~~~l~i~G~g~~~----~~~~~~~~~~~~--~~~V~~~g~v~~~ 255 (357)
T cd03795 194 FLFVGRLVYYKGLDV-LLEAAAALP-----------DAPLVIVGEGPLE----AELEALAAALGL--LDRVRFLGRLDDE 255 (357)
T ss_pred EEEecccccccCHHH-HHHHHHhcc-----------CcEEEEEeCChhH----HHHHHHHHhcCC--cceEEEcCCCCHH
Confidence 339999999999887 666665542 5678888865322 223333322111 001111111
Q ss_pred --------ceEEEE-----------------ecCceeeccccCccHHHHHhhcCcceeecCCc
Q psy17283 279 --------LKVVFL-----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 316 (635)
Q Consensus 279 --------lkvvfl-----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~~ 316 (635)
..++++ ..|.+.|+|-.|+..|..++ .++||+++..+
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~-~~~~g~~~~~~ 317 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL-HGVTGLVVPPG 317 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh-CCCceEEeCCC
Confidence 111111 57888999888888776664 46788887643
No 53
>PRK14099 glycogen synthase; Provisional
Probab=23.62 E-value=1.1e+02 Score=34.89 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=43.0
Q ss_pred chhhhhhhHHHhhhHHHHHHHHHHhcccccccccccccccCCCceeEEeCCcchhhhHHHHHHHhHHhhCCCHHHHHHHh
Q psy17283 82 KELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDIT 161 (635)
Q Consensus 82 ~~lRl~Qe~~l~~~~~~~ii~~~~~~~~g~~~~~~~~~~~~p~~~~~~lNd~Hpal~i~el~r~l~d~~g~~w~~a~~~~ 161 (635)
...| -.||+.|++. +++... ..+ .+.++|.||.|++++.. +++.. . ..
T Consensus 110 ~~~r---f~~f~~a~~~-~~~~~~--------------~~~-~pDIiH~Hdw~~~l~~~-~l~~~----~--------~~ 157 (485)
T PRK14099 110 NAQR---FAALARAAAA-IGQGLV--------------PGF-VPDIVHAHDWQAGLAPA-YLHYS----G--------RP 157 (485)
T ss_pred HHHH---HHHHHHHHHH-HHhhhc--------------cCC-CCCEEEECCcHHHHHHH-HHHhC----C--------CC
Confidence 4456 5789998884 655321 111 45789999999998753 33310 0 01
Q ss_pred hcccceecccccccccccCCHHHHHh
Q psy17283 162 VKTCAYTNHTVLPEALERWPVTLMEN 187 (635)
Q Consensus 162 ~~~~~~t~HT~~~e~~e~~~~~l~~~ 187 (635)
+-.+++|.|...-.+ .|+...+..
T Consensus 158 ~~~~V~TiHn~~~qg--~~~~~~~~~ 181 (485)
T PRK14099 158 APGTVFTIHNLAFQG--QFPRELLGA 181 (485)
T ss_pred CCCEEEeCCCCCCCC--cCCHHHHHH
Confidence 234789999985433 355554443
No 54
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=22.33 E-value=2.3e+02 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=24.8
Q ss_pred ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 285 LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 285 ~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
.-|.+.|+|--|+..|+..+ ++||+++-.
T Consensus 332 a~G~PVIas~vgg~~e~i~~--~~~G~l~~~ 360 (407)
T cd04946 332 SFGIPVIATNVGGTPEIVDN--GGNGLLLSK 360 (407)
T ss_pred HcCCCEEeCCCCCcHHHhcC--CCcEEEeCC
Confidence 68999999999999998885 779998853
No 55
>PLN02949 transferase, transferring glycosyl groups
Probab=22.11 E-value=3.4e+02 Score=30.84 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred cccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEee-cCCCCCHHH-HHHHHHHHHHHHHHcCCcCcCCc--
Q psy17283 203 HLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGG-KAAPGYYTA-KKIIKLICSVARVVNNDPDVGDK-- 278 (635)
Q Consensus 203 ~~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaG-KA~P~y~~a-k~iIk~I~~~a~~innd~~i~~~-- 278 (635)
++.+=|+.+.|+..+ ++..+.++.+-.... ..+..++++| -..++|..- .++-+++.++. +.+...+.+.
T Consensus 271 il~vGR~~~~Kg~~l-lI~A~~~l~~~~~~~---~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~--L~~~V~f~g~v~ 344 (463)
T PLN02949 271 IISVAQFRPEKAHAL-QLEAFALALEKLDAD---VPRPKLQFVGSCRNKEDEERLQKLKDRAKELG--LDGDVEFHKNVS 344 (463)
T ss_pred EEEEEeeeccCCHHH-HHHHHHHHHHhcccc---CCCcEEEEEeCCCCcccHHHHHHHHHHHHHcC--CCCcEEEeCCCC
Confidence 348889999999999 888877764321110 1224454444 444555432 33434443321 1111222221
Q ss_pred -------ce--EEEE----------------ecCceeeccccCcc-HHHHH-hhcCcceeecC
Q psy17283 279 -------LK--VVFL----------------LNGALTIGTLDGAN-VEMAE-EMGNDNIFIFG 314 (635)
Q Consensus 279 -------lk--vvfl----------------~NG~l~l~tlDG~~-~E~~~-~vG~eN~~~fG 314 (635)
++ .+|+ ..|.+.+++-.|+- .|+.. +.+++|||++.
T Consensus 345 ~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~ 407 (463)
T PLN02949 345 YRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT 407 (463)
T ss_pred HHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC
Confidence 11 1233 57888888877653 34433 33467888874
No 56
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=21.92 E-value=6.8e+02 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 285 LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 285 ~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
.-|.+.|+|-.|+..|...+ ++||+++..
T Consensus 292 a~G~PvI~s~~~~~~e~i~~--~~~g~~~~~ 320 (367)
T cd05844 292 ASGVPVVATRHGGIPEAVED--GETGLLVPE 320 (367)
T ss_pred HcCCCEEEeCCCCchhheec--CCeeEEECC
Confidence 55777777777777776654 677777753
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.84 E-value=1.1e+02 Score=32.10 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=24.0
Q ss_pred ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 285 LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 285 ~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
..|.+.|+|-.|...|...+ +.|||++-.
T Consensus 292 a~g~PvI~s~~~~~~e~i~~--~~~G~~~~~ 320 (371)
T cd04962 292 ACGVPVVASNAGGIPEVVKH--GETGFLVDV 320 (371)
T ss_pred HcCCCEEEeCCCCchhhhcC--CCceEEcCC
Confidence 78999999988888888775 688888754
No 58
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=20.47 E-value=2.9e+02 Score=34.85 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=60.7
Q ss_pred ccccccccccchhhchhhHHHHHHHHHcCCCCCCCCeEEEEeecCCCCCHH-------HHHHHHHHHHHHHHHcCCcCcC
Q psy17283 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYT-------AKKIIKLICSVARVVNNDPDVG 276 (635)
Q Consensus 204 ~~~rR~heYKRq~Lnil~~~~ry~~i~~~~~~~~~p~~~IfaGKA~P~y~~-------ak~iIk~I~~~a~~innd~~i~ 276 (635)
+++-|+.+.|.... ++..+.++.++...+ ..++|.|+.... +.+ ..++.++|.++.- .+...+.
T Consensus 483 L~VGRL~p~KGi~~-LIeAf~~L~~l~~~~-----nL~LIiG~gdd~-d~l~~~~~~~l~~L~~li~~lgL--~g~V~Fl 553 (1050)
T TIGR02468 483 LALARPDPKKNITT-LVKAFGECRPLRELA-----NLTLIMGNRDDI-DEMSSGSSSVLTSVLKLIDKYDL--YGQVAYP 553 (1050)
T ss_pred EEEcCCccccCHHH-HHHHHHHhHhhccCC-----CEEEEEecCchh-hhhhccchHHHHHHHHHHHHhCC--CCeEEec
Confidence 38999999999988 777766665443333 234455542211 111 1233344333221 1111122
Q ss_pred C---------cce------EEEE----------------ecCceeeccccCccHHHHHhhcCcceeecCC
Q psy17283 277 D---------KLK------VVFL----------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGM 315 (635)
Q Consensus 277 ~---------~lk------vvfl----------------~NG~l~l~tlDG~~~E~~~~vG~eN~~~fG~ 315 (635)
| +++ -||+ .-|.+.++|-.|+..|+.++ ++||+++-.
T Consensus 554 G~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~--g~nGlLVdP 621 (1050)
T TIGR02468 554 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV--LDNGLLVDP 621 (1050)
T ss_pred CCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc--CCcEEEECC
Confidence 2 222 2666 89999999999999999886 899999875
Done!