RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17283
(635 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 387 bits (998), Expect = e-125
Identities = 129/216 (59%), Positives = 164/216 (75%), Gaps = 8/216 (3%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
L WD +AWDIT KT AYTNHT+LPEALE+WPV L E LLPRH++IIY IN
Sbjct: 328 LDWD--------EAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRF 379
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRD 487
L+ V AK+P D DR+RRMS+IEE G+K+V MAHL+IVGSH+VNGVA +HSE++K +F+D
Sbjct: 380 LEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKD 439
Query: 488 FYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAF 547
FYEL PEKF NKTNGITPRRWLL NP L+ +I E IG+DW+ L+QL +L+ +A DPAF
Sbjct: 440 FYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAF 499
Query: 548 QREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+E +KQ NK +LA YI+K ++V+ S+FD+Q
Sbjct: 500 LKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQ 535
Score = 315 bits (811), Expect = 2e-97
Identities = 118/204 (57%), Positives = 135/204 (66%), Gaps = 37/204 (18%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
QVKRIHEYKRQLLN LHII LYNRIK+NP PRT + GGKAAPGYY AK IIKLI +
Sbjct: 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINA 594
Query: 265 VARVVNNDPDVGDKLKVVFL-------------------------------------LNG 287
VA VVNNDPDVGDKLKVVFL LNG
Sbjct: 595 VADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNG 654
Query: 288 ALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI 347
ALTIGTLDGANVE+AEE+G +NIFIFG+T ++VE L+ GY YY A+PEL+ V+DQI
Sbjct: 655 ALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVLDQI 714
Query: 348 TNGFFSPENPDEFKDLSDILLKWD 371
+GFFSP +P EF+ L D LL +
Sbjct: 715 ASGFFSPGDPGEFRPLVDSLLNGN 738
Score = 309 bits (794), Expect = 5e-95
Identities = 107/178 (60%), Positives = 131/178 (73%), Gaps = 9/178 (5%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L N GDYI+AV ++N AENIS+VLYPND+ GKELRLKQ+YF +A+LQDIIRRF+
Sbjct: 231 LDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK- 289
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
K +FP+KVAIQLNDTHP+LAIPELMR+LVD EGL+WD+AWDIT KT A
Sbjct: 290 -------KTHGPLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFA 342
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHL-QVKRIHEYKRQLLNALHII 223
YTNHT+LPEALE+WPV L E LLPRH++IIY IN L +V+ + + + II
Sbjct: 343 YTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSII 400
Score = 115 bits (290), Expect = 1e-26
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDS+ATLGL YGYGIRYEYG+F QKI +G Q E PD+WLRY N
Sbjct: 111 RLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGN 160
Score = 78.3 bits (194), Expect = 6e-15
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGV 618
++Q +W +I+NIA SGKFSSDRTI EYA +IW V
Sbjct: 762 RDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 341 bits (877), Expect = e-108
Identities = 128/216 (59%), Positives = 163/216 (75%), Gaps = 8/216 (3%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
L WD +AW+IT KT AYTNHTVLPEALE+WPV L+E LLPRH+QIIY IN
Sbjct: 242 LSWD--------EAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERF 293
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRD 487
L+ V K+P D D++RRMS+I+E KRV MAHL+IVGSHAVNGVA +HS+++K D+F D
Sbjct: 294 LKLVWEKWPGDEDKLRRMSIIDEGAGKRVRMAHLAIVGSHAVNGVAALHSDLVKKDLFPD 353
Query: 488 FYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAF 547
F+EL P KFQNKTNGITPRRWLL NP LA +I + +G++W+ LEQL +L+ +A DPAF
Sbjct: 354 FHELWPNKFQNKTNGITPRRWLLQANPGLAAIITKSLGDEWVTDLEQLIKLEPFADDPAF 413
Query: 548 QREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
E ++KQ NK +LA+YIEKE + VN ++FD+Q
Sbjct: 414 IEEWAEIKQANKQRLAEYIEKETGVVVNPNALFDVQ 449
Score = 273 bits (701), Expect = 2e-82
Identities = 108/154 (70%), Positives = 124/154 (80%), Gaps = 8/154 (5%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L NDGDY+ AV D+N AENISRVLYPNDN F GKELRLKQ+YF+ +ATLQDIIRRF+
Sbjct: 145 LADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEGKELRLKQQYFLVSATLQDIIRRFKK 204
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
S +FP+KVAIQLNDTHP+LAIPELMR+L+D EGL WD+AW+IT KT A
Sbjct: 205 SHKS--------LSEFPDKVAIQLNDTHPTLAIPELMRILIDEEGLSWDEAWEITTKTFA 256
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
YTNHTVLPEALE+WPV L+E LLPRH+QIIY IN
Sbjct: 257 YTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEIN 290
Score = 270 bits (692), Expect = 3e-81
Identities = 114/200 (57%), Positives = 135/200 (67%), Gaps = 37/200 (18%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
QVKRIHEYKRQLLN LH+I YNRIK++P PR ++ GGKAAPGYY AK+IIKLI S
Sbjct: 449 QVKRIHEYKRQLLNVLHVIYRYNRIKEDPPKDVVPRVVIFGGKAAPGYYMAKRIIKLINS 508
Query: 265 VARVVNNDPDVGDKLKVVFL-------------------------------------LNG 287
VA VVNNDP VGDKLKVVFL LNG
Sbjct: 509 VADVVNNDPAVGDKLKVVFLPNYRVSLAEKIIPASDISEQISTAGTEASGTSNMKFALNG 568
Query: 288 ALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI 347
ALTIGTLDGANVE+AEE+G +NIFIFG+T ++VE L+KKGY + YY +P L+ V+DQI
Sbjct: 569 ALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQI 628
Query: 348 TNGFFSPENPDEFKDLSDIL 367
+GFFSPE+PD F+D+ D L
Sbjct: 629 ISGFFSPEDPDRFRDILDSL 648
Score = 104 bits (261), Expect = 3e-23
Identities = 39/50 (78%), Positives = 42/50 (84%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDS+ATLGL AYGYGIRYEYG+F QKI +G Q E PDDWL Y N
Sbjct: 28 RLAACFLDSLATLGLPAYGYGIRYEYGMFEQKIVDGWQVELPDDWLEYGN 77
Score = 72.8 bits (179), Expect = 3e-13
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 30/131 (22%)
Query: 520 IAEKIGEDWI----IHLEQLAQLKQ--------YAKDPAFQR-------EVFKVKQENKM 560
IAE++GE+ I + E++ L++ Y KDP ++ F + ++
Sbjct: 582 IAEEVGEENIFIFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRF 641
Query: 561 K-LAQYIEKEYHIKVNA--ASIFDMQ--------NQTKWLEMAIMNIASSGKFSSDRTIT 609
+ + ++ + V A S D Q ++ W + +I+NIA+SGKFSSDRTI
Sbjct: 642 RDILDSLQGGDYYLVFADFPSYVDAQKRVDELYKDREAWTKKSILNIANSGKFSSDRTIK 701
Query: 610 EYAREIWGVEP 620
EYA+ IWG+EP
Sbjct: 702 EYAKRIWGIEP 712
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 333 bits (857), Expect = e-104
Identities = 118/204 (57%), Positives = 153/204 (75%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AWDIT KT AYTNHT+LPEALE+WPV L + LLPRH++IIY IN L + AK P D
Sbjct: 329 EAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDE 388
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNK 499
++RRMS+IEE KRV MA+L+IVGSH+VNGVA +H+E++K D+ +DFYEL PEKF NK
Sbjct: 389 AKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNK 448
Query: 500 TNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENK 559
TNGITPRRWL L NP L+ ++ E IG+DW+ L+ L +L+ YA D F E +VKQ NK
Sbjct: 449 TNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANK 508
Query: 560 MKLAQYIEKEYHIKVNAASIFDMQ 583
+LA YI++ ++V+ SIFD+Q
Sbjct: 509 QRLAAYIKEHTGVEVDPNSIFDVQ 532
Score = 277 bits (710), Expect = 4e-83
Identities = 128/276 (46%), Positives = 161/276 (58%), Gaps = 47/276 (17%)
Query: 137 LAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMEN------LLP 190
LA P L +L + G +W D+ K Y + E LE + N +
Sbjct: 460 LANPGLSALLTETIGDDWLTDLDLLKKLEPYADD---SEFLEEFRQVKQANKQRLAAYIK 516
Query: 191 RHMQIIYHINFLH-LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAA 249
H + N + +QVKR+HEYKRQLLN LH+I LYNRIK++P PRT++ GGKAA
Sbjct: 517 EHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAA 576
Query: 250 PGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFL------------------------- 284
PGY+ AK IIKLI SVA VVNNDP VGDKLKVVF+
Sbjct: 577 PGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAG 636
Query: 285 ------------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPS 332
LNGALTIGTLDGANVE+ EE+G +NIFIFG+TV++VE L++KGY+
Sbjct: 637 KEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPRE 696
Query: 333 YYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 368
YY A+PELK V+D I++G FSP +P F+ L D LL
Sbjct: 697 YYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLL 732
Score = 269 bits (691), Expect = 2e-80
Identities = 102/180 (56%), Positives = 128/180 (71%), Gaps = 11/180 (6%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L N GDY +AV ++N AENISRVLYPND+ + GKELRLKQ+YF +A+LQDIIRR
Sbjct: 228 LDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRH-- 285
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
++ FP+KVAIQLNDTHP+LAIPELMR+L+D EG++WD+AWDIT KT A
Sbjct: 286 ------LETHPDLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFA 339
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHIN--FLHLQVKRIHEYKRQLLNALHIIT 224
YTNHT+LPEALE+WPV L + LLPRH++IIY IN FL ++ + + II
Sbjct: 340 YTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFL-AELAAKGPGDEAKIRRMSIIE 398
Score = 101 bits (253), Expect = 3e-22
Identities = 39/50 (78%), Positives = 42/50 (84%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDS+ATLGL A GYGIRYEYG+F QKI +G Q E PDDWLRY N
Sbjct: 108 RLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGN 157
Score = 68.4 bits (168), Expect = 6e-12
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 581 DMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGV 618
++Q +W + +I+NIA+SGKFSSDRTI EYA+EIW V
Sbjct: 757 LYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 253 bits (649), Expect = 1e-74
Identities = 115/261 (44%), Positives = 139/261 (53%), Gaps = 56/261 (21%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRY------VNDGD- 54
RLA CFLDS A LGL GYG+RY YG F Q +G Q E PD+WL+Y + D +
Sbjct: 119 RLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEG 178
Query: 55 --YIQAVL------------------------------DRNLAENISRVLYPNDNNFGGK 82
Y V ++N A NI+RVLYP D+ K
Sbjct: 179 VPYDVPVPGYDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS----K 234
Query: 83 ELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPEL 142
ELRLKQEYF+ +A +QDI+ R D + LNDTHP+LAIPEL
Sbjct: 235 ELRLKQEYFLGSAGVQDILARGHLEHH--------DLDVLADH----LNDTHPALAIPEL 282
Query: 143 MRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFL 202
MR+L+D EGL WD+AW+I KT YTNHT LPEALE WPV L + LLPRH+QIIY IN
Sbjct: 283 MRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINAR 342
Query: 203 HLQVKRIHEYKRQLLNALHII 223
L R+ Y L+ I
Sbjct: 343 FLPEVRL-LYLGDLIRRGSPI 362
Score = 242 bits (620), Expect = 1e-70
Identities = 104/203 (51%), Positives = 135/203 (66%), Gaps = 7/203 (3%)
Query: 381 AWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDLD 440
AW+I KT YTNHT LPEALE WPV L + LLPRH+QIIY IN L V + D
Sbjct: 297 AWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEVRLLYLGD-- 354
Query: 441 RMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKT 500
+RR S IEE VNMA L++VGSH+VNGV+ +HSE+ K F DF+ L PEK N T
Sbjct: 355 LIRRGSPIEE-----VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVT 409
Query: 501 NGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKM 560
NGITPRRWL NP LAD++ EKIG++W+ L+ L +L +A D AF+ + ++K+ENK
Sbjct: 410 NGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKK 469
Query: 561 KLAQYIEKEYHIKVNAASIFDMQ 583
+LA+ I I+V+ ++FD Q
Sbjct: 470 RLAEEIADRTGIEVDPNALFDGQ 492
Score = 200 bits (510), Expect = 3e-55
Identities = 89/203 (43%), Positives = 111/203 (54%), Gaps = 49/203 (24%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMI-GGKAAPGYYTAKKIIKLIC 263
Q +RIHEYKRQLLN L I LY +K++ PR +I GKA P Y AK+IIKLI
Sbjct: 492 QARRIHEYKRQLLNLLDIERLYRILKEDW----VPRVQIIFAGKAHPADYAAKEIIKLIN 547
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NN KLKVVFL LN
Sbjct: 548 DVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALN 601
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPS-YYNANPELKLVVD 345
GALT+GTLDGANVE+ E +G +N +IFG TV++V+ L+ GYD + YY E+K V+D
Sbjct: 602 GALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLD 661
Query: 346 QITNGFFSPENPDEFKDLSDILL 368
+I +G FSP FK+L D LL
Sbjct: 662 EIIDGRFSPGWKSRFKNLIDSLL 684
Score = 63.1 bits (154), Expect = 3e-10
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 565 YIEKEY---HIKVNAASIFDMQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEP 620
Y K Y +V+A ++Q W + AI+NIA+SG FSSDRTI EYA EIW + P
Sbjct: 696 YDFKAYVPAQEEVDA----LYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHIGP 750
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 232 bits (593), Expect = 2e-66
Identities = 95/221 (42%), Positives = 146/221 (66%), Gaps = 11/221 (4%)
Query: 363 LSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYH 422
L + L WD AW IT KT AYTNHT++PEALE W L+++LLPRHMQII
Sbjct: 325 LDEHQLSWD--------DAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKE 376
Query: 423 INFLHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKH 482
IN V +P D +++++ DK+V MA+L +V AVNGVA +HS+++
Sbjct: 377 INTRFKTLVEKTWPGDKKVWAKLAVVH---DKQVRMANLCVVSGFAVNGVAALHSDLVVK 433
Query: 483 DIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYA 542
D+F ++++L P KF N TNGITPRRW+ CNP+LA ++ + + ++W L+QL L++YA
Sbjct: 434 DLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYA 493
Query: 543 KDPAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
D AF+++ ++KQ NK++LA+++++ I++N +IFD+Q
Sbjct: 494 DDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQ 534
Score = 213 bits (545), Expect = 7e-60
Identities = 90/203 (44%), Positives = 116/203 (57%), Gaps = 37/203 (18%)
Query: 204 LQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLIC 263
+Q+KR+HEYKRQ LN LHI+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 533 VQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAIN 592
Query: 264 SVARVVNNDPDVGDKLKVVFL-------------------------------------LN 286
VA V+NNDP VGDKLKVVFL LN
Sbjct: 593 KVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALN 652
Query: 287 GALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQ 346
GALT+GTLDGANVE+AE++G +NIFIFG TV+QV+ L KGYD + + L V+ +
Sbjct: 653 GALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLAKGYDPVKWRKKDKVLDAVLKE 712
Query: 347 ITNGFFSPENPDEFKDLSDILLK 369
+ +G +S + F + L +
Sbjct: 713 LESGKYSDGDKHAFDQMLHSLKQ 735
Score = 191 bits (487), Expect = 6e-52
Identities = 80/151 (52%), Positives = 105/151 (69%), Gaps = 10/151 (6%)
Query: 51 NDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRR-FRTSKS 109
NDGD+++A AE +++VLYPNDN+ GK+LRL Q+YF CA ++ DI+RR +
Sbjct: 237 NDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRK 296
Query: 110 VAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTN 169
+ E+ P+ IQLNDTHP++AIPEL+RVL+D L WD AW IT KT AYTN
Sbjct: 297 LHEL---------PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTN 347
Query: 170 HTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
HT++PEALE W L+++LLPRHMQII IN
Sbjct: 348 HTLMPEALECWDEKLVKSLLPRHMQIIKEIN 378
Score = 83.9 bits (208), Expect = 9e-17
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLR 48
RLAACFLDSMAT+G A GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 117 RLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 163
Score = 44.7 bits (106), Expect = 1e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIW 616
++Q W AI+N A G FSSDR+I +Y IW
Sbjct: 761 RDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 226 bits (578), Expect = 3e-64
Identities = 119/295 (40%), Positives = 151/295 (51%), Gaps = 51/295 (17%)
Query: 122 FPEKVAIQLNDTHP----SLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEAL 177
FP + N P +LA P L VL + G W D++ + H P
Sbjct: 457 FPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRT--DLS-QLSELKQHCDYPMVN 513
Query: 178 ERWPVTLMENLLPRHMQIIYHIN-------FLHLQVKRIHEYKRQLLNALHIITLYNRIK 230
+EN I +N +Q+KRIHEYKRQL+N LH+IT YNRIK
Sbjct: 514 HAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIK 573
Query: 231 KNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFL------ 284
+P K+ PR + GKAA YY AK II LI VA+V+NNDP +GDKLKVVF+
Sbjct: 574 ADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVS 633
Query: 285 -------------------------------LNGALTIGTLDGANVEMAEEMGNDNIFIF 313
LNGALTIGTLDGANVEM E +G +NIFIF
Sbjct: 634 LAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIF 693
Query: 314 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 368
G T ++VE L+++GY YY + EL V+ QI +G FSPE P ++DL D L+
Sbjct: 694 GNTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLI 748
Score = 226 bits (577), Expect = 4e-64
Identities = 92/211 (43%), Positives = 139/211 (65%)
Query: 373 ENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVL 432
E+ A+++ + +YTNHT++ EALE WPV ++ +LPRH+QII+ IN L+ +
Sbjct: 338 EHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQ 397
Query: 433 AKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELT 492
++PND D + R S+I+E +RV MA L++V SH VNGV+ +HS ++ +F DF ++
Sbjct: 398 EQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIF 457
Query: 493 PEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVF 552
P +F N TNG+TPRRWL L NPSL+ V+ E IG W L QL++LKQ+ P V
Sbjct: 458 PGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVR 517
Query: 553 KVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+ K ENK +LA+YI ++ ++ VN ++FD+Q
Sbjct: 518 QAKLENKKRLAEYIAQQLNVVVNPKALFDVQ 548
Score = 190 bits (483), Expect = 2e-51
Identities = 76/151 (50%), Positives = 109/151 (72%), Gaps = 10/151 (6%)
Query: 51 NDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDII-RRFRTSKS 109
N GDY AV D+N +EN+SRVLYP+D+ + G+ELRL+QEYF+ +AT+QDI+ R ++ K+
Sbjct: 248 NQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLHKT 307
Query: 110 VAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTN 169
+D +K+AI LNDTHP L+IPELMR+L+D WD A+++ + +YTN
Sbjct: 308 ---------YDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTN 358
Query: 170 HTVLPEALERWPVTLMENLLPRHMQIIYHIN 200
HT++ EALE WPV ++ +LPRH+QII+ IN
Sbjct: 359 HTLMSEALETWPVDMLGKILPRHLQIIFEIN 389
Score = 88.4 bits (219), Expect = 3e-18
Identities = 35/50 (70%), Positives = 38/50 (76%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDS+ATLGL GYGIRY+YG+F Q I NG Q E PD WL Y N
Sbjct: 128 RLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGN 177
Score = 55.6 bits (134), Expect = 6e-08
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEP 620
+NQ +W A++NIA+ G FSSDRTI EYA EIW ++P
Sbjct: 775 RNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDP 812
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 65.8 bits (161), Expect = 3e-11
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 24/192 (12%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+AW+ K+ +T HT +P + +P LM ++ L + +LA L
Sbjct: 192 EAWEAVRKSSLFTTHTPVPAGHDVFPEDLMR----KYFGDYAANLGLPREQLLA-----L 242
Query: 440 DRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEK---F 496
R D + NM L++ S NGV+ +H E+ + +++ Y E+
Sbjct: 243 GREN------PDDPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPI 295
Query: 497 QNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQ 556
TNG+ W P L D+ +GE+W L + A D E+++V
Sbjct: 296 GYVTNGVHNPTW---VAPELRDLYERYLGENWRELLA--DEELWEAIDDIPDEELWEVHL 350
Query: 557 ENKMKLAQYIEK 568
+ K +L YI +
Sbjct: 351 KLKARLIDYIRR 362
Score = 53.5 bits (129), Expect = 2e-07
Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 67/225 (29%)
Query: 3 LAACFLDSMATLGLSAYGYGIRYEYGIFAQKI-KNGEQTEEPDDWLRYVNDGDY---IQA 58
LA L S + LGL G+ Y+ G F Q++ ++G Q E Y N+ I+
Sbjct: 24 LAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQE------AYPNNDFESLPIEK 77
Query: 59 VLDRNLAE-------------------NISRV-LYPNDNNF----------------GGK 82
VLD + + RV LY D N G K
Sbjct: 78 VLDTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDK 137
Query: 83 ELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAI-QLNDTHPSLAIPE 141
E+R+ QE + ++ A + LN+ H + E
Sbjct: 138 EMRIAQEIVLGIGGVR-------------------ALRALGIDPDVYHLNEGHAAFVTLE 178
Query: 142 LMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLME 186
+R L+ +GL +++AW+ K+ +T HT +P + +P LM
Sbjct: 179 RIRELIA-QGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMR 222
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 46.8 bits (112), Expect = 3e-05
Identities = 39/193 (20%), Positives = 79/193 (40%), Gaps = 29/193 (15%)
Query: 380 QAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNVLAKFPNDL 439
+A + + +T HT +P +R+P L+E + L L
Sbjct: 280 EALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPY--------AREL---------GL 322
Query: 440 DRMRRMSLIEEDGDKRV---NMAHLSIVGSHAVNGVAFIHSEIIKHDIFRDFY-ELTPEK 495
R R ++L E+ NMA L++ + NGV+ +H E+ + +F + E+
Sbjct: 323 SRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSRE-MFAGLWPGFPVEE 381
Query: 496 --FQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFK 553
+ TNG+ W+ P + ++ +G DW + P E+++
Sbjct: 382 VPIGHVTNGVHVPTWV---APEMRELYDRYLGGDWRERPTDPELWEAVDDIPD--EELWE 436
Query: 554 VKQENKMKLAQYI 566
V+Q+ + +L +++
Sbjct: 437 VRQQLRRRLIEFV 449
Score = 41.4 bits (98), Expect = 0.001
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 64/213 (30%)
Query: 14 LGLSAYGYGIRYEYGIFAQKI-KNGEQTE----------------EPD-DWLR-YVNDGD 54
LGL G G+ Y G F Q++ +G Q E + D + +R V
Sbjct: 122 LGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDADGEPVRVSVELPG 181
Query: 55 YIQAV--------------LDRNLAEN------ISRVLYPNDNNFGGKELRLKQEYFMCA 94
LD ++ EN I+ LY G +E R++QE +
Sbjct: 182 RTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYG-----GDQETRIQQEILL-- 234
Query: 95 ATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAI-QLNDTHPSLAIPELMRVLVDVEGLE 153
+ ++ A K + +N+ H + E +R L+ GL
Sbjct: 235 --------------GIGGVR---ALRALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLS 277
Query: 154 WDKAWDITVKTCAYTNHTVLPEALERWPVTLME 186
+D+A + + +T HT +P +R+P L+E
Sbjct: 278 FDEALEAVRASTVFTTHTPVPAGHDRFPPDLVE 310
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 35.3 bits (81), Expect = 0.069
Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 43/169 (25%)
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQVKRIHEYKRQ--LLNALHIIT 224
T H V LE P + + + V R+ K L+ A ++
Sbjct: 80 LTVHGVNRSLLEGVP---------LSLLALSIGLADKVFVGRLAPEKGLDDLIEAFALL- 129
Query: 225 LYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKL--ICSVARVVNNDPDVGDKLKV- 281
K + ++I G Y + + L + V + DP+ L +
Sbjct: 130 ---------KERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLA 180
Query: 282 ---VFLL----------------NGALTIGTLDGANVEMAEEMGNDNIF 311
VF+L G I T G E+ E+ +
Sbjct: 181 AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 34.7 bits (80), Expect = 0.11
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 391 YTNHTVLPEALERWPVTLMENLLPRHM-QIIYHINFLHLQNVL 432
+ +HTVL + LE++P L E+ + +++ QI+ I F H N++
Sbjct: 81 FVDHTVLDD-LEKYPNGLDESRVRKYLFQILRGIEFCHSHNII 122
>gnl|CDD|224811 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
modification, protein turnover, chaperones].
Length = 318
Score = 31.4 bits (72), Expect = 1.2
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 24/103 (23%)
Query: 424 NFLHLQNVLAKFPNDLDRMRRM----SLIEEDGDKRVNMAHLSIVGSHAVNGV------- 472
+ + + + L +++ I E G KR+N SI+ + A NGV
Sbjct: 134 EYEVFEEFIREILEKLLGIKKEWSTREFIYELG-KRLNDDESSILYTAAKNGVPIFCPAI 192
Query: 473 --------AFIHSEIIKH----DIFRDFYELTPEKFQNKTNGI 503
+ H E DI D +EL F + G
Sbjct: 193 TDSSIGDMLWFHREEQGSDLKIDIVEDVHELNDIVFNAEKTGA 235
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1.
This CD includes a diverse group of monomeric plant
terpene cyclases (Tspa-Tspf) that convert the acyclic
isoprenoid diphosphates, geranyl diphosphate (GPP),
farnesyl diphosphate (FPP), or geranylgeranyl
diphosphate (GGPP) into cyclic monoterpenes, diterpenes,
or sesquiterpenes, respectively; a few form acyclic
species. Terpnoid cyclases are soluble enzymes localized
to the cytosol (sesquiterpene synthases) or plastids
(mono- and diterpene synthases). All monoterpene and
diterpene synthases have restrict substrate specificity,
however, some sesquiterpene synthases can accept both
FPP and GPP. The catalytic site consists of a large
central cavity formed by mostly antiparallel alpha
helices with two aspartate-rich regions located on
opposite walls. These residues mediate binding of prenyl
diphosphates, via bridging Mg2+ ions (K+ preferred by
gymnosperm cyclases), inducing conformational changes
such that an N-terminal region forms a cap over the
catalytic core. Loss of diphosphate from the
enzyme-bound substrate (GPP, FPP, or GGPP) results in an
allylic carbocation that electrophilically attacks a
double bond further down the terpene chain to effect the
first ring closure. Unlike monoterpene, sesquiterene,
and macrocyclic diterpenes synthases, which undergo
substrate ionization by diphosphate ester scission,
Tpsc-like diterpene synthases catalyze cyclization
reactions by an initial protonation step producing a
copalyl diphosphate intermediate. These enzymes lack the
aspartate-rich sequences mentioned above. Most diterpene
synthases have an N-terminal, internal element (approx
210 aa) whose function is unknown.
Length = 542
Score = 31.4 bits (72), Expect = 1.5
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 173 LPEALERWPVTLMENLLPRHMQIIYH 198
EA+ERW ++ ++ LP +M+I++
Sbjct: 312 FTEAVERWDISAIDQ-LPEYMKIVFK 336
Score = 31.4 bits (72), Expect = 1.5
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 397 LPEALERWPVTLMENLLPRHMQIIYH 422
EA+ERW ++ ++ LP +M+I++
Sbjct: 312 FTEAVERWDISAIDQ-LPEYMKIVFK 336
>gnl|CDD|225509 COG2961, ComJ, Protein involved in catabolism of external DNA
[General function prediction only].
Length = 279
Score = 30.7 bits (70), Expect = 2.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 86 LKQEYFMCAATLQDIIRRFRTSKSVA---EIKDKSAFDKFPEK 125
LK EY L + +RF T + A IKD+ +F
Sbjct: 168 LKDEYQRVVEALAEAYKRFATG-TYAIWYPIKDRRQIRRFLRA 209
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding
domain. It has been suggested that this gene family be
designated tps (for terpene synthase). It has been split
into six subgroups on the basis of phylogeny, called
tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi-
aristolochene synthase, and (+)-delta-cadinene synthase.
tpsb includes (-)-limonene synthase. tpsc includes
kaurene synthase A. tpsd includes taxadiene synthase,
pinene synthase, and myrcene synthase. tpse includes
kaurene synthase B. tpsf includes linalool synthase.
Length = 270
Score = 30.0 bits (68), Expect = 3.3
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 173 LPEALERWPVTLMENLLPRHMQIIYHI 199
+A+ERW ++ ++ LP +M+I++
Sbjct: 92 FTDAVERWDISAIDE-LPDYMKIVFKA 117
Score = 30.0 bits (68), Expect = 3.3
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 397 LPEALERWPVTLMENLLPRHMQIIYHI 423
+A+ERW ++ ++ LP +M+I++
Sbjct: 92 FTDAVERWDISAIDE-LPDYMKIVFKA 117
>gnl|CDD|163518 TIGR03806, chp_HNE_0200, conserved hypothetical protein, HNE_0200
family. The model TIGR03805 describes an
uncharacterized protein family that contains repeats
associated with the formation of a right-handed helical
stack of parallel beta strands, homologous to those
found in a number of carbohydrate-binding proteins and
sugar hydrolases. This model describes another
uncharacterized protein family, found in the same
species as TIGR03805 member proteins, usually as the
adjacent gene or in a fusion protein. An example is
HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes
two members of this family are with a single member of
TIGR03805. The function is unknown [Hypothetical
proteins, Conserved].
Length = 317
Score = 29.7 bits (67), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 133 THPSLAIPELMRVLVDVEGLEWDKAW 158
T P + +PEL R LV EGL + W
Sbjct: 288 TEPGVRMPELGRSLVHQEGLALIRQW 313
>gnl|CDD|150081 pfam09293, RNaseH_C, T4 RNase H, C terminal. Members of this
family are found in T4 RNaseH ribonuclease, and adopt a
SAM domain-like fold, consisting of a bundle of
four/five helices. These residues may have a role in
providing a docking site for other proteins or enzymes
in the replication fork.
Length = 122
Score = 28.5 bits (64), Expect = 4.8
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 12/45 (26%)
Query: 222 IITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICSVA 266
II YN K P+GK Y+ ++KL+ V
Sbjct: 88 IIEAYNTYKVPPRGKIYS------------YFVKNGLVKLLEKVN 120
>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
Length = 581
Score = 29.2 bits (65), Expect = 7.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 87 KQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVL 146
KQ Y +C RRFR + S A + K+ F+K+ E + + L R L
Sbjct: 3 KQTYKVCFC----FRRRFRYTASEAPREIKTIFEKYSENGV---------MTVDHLHRFL 49
Query: 147 VDVEGLEWDKA 157
+DV+ + DKA
Sbjct: 50 IDVQ--KQDKA 58
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 261
Score = 28.7 bits (65), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 285 LNGALTI--GTLDGANVEMAEEMGN 307
LNG T+ G L+ +NV + EE+ N
Sbjct: 208 LNGLGTLRQGFLETSNVNVVEELVN 232
>gnl|CDD|172826 PRK14350, ligA, NAD-dependent DNA ligase LigA; Provisional.
Length = 669
Score = 29.0 bits (65), Expect = 9.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 358 DEFKDLSDILLKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALE-RWP 405
DE DL ++ KWD E +DS +V+ Y + + LE ++P
Sbjct: 7 DEILDLKKLIRKWDKEYYVDSSP----SVEDFTYDKALLRLQELESKYP 51
>gnl|CDD|178221 PLN02611, PLN02611, glutamate--cysteine ligase.
Length = 482
Score = 28.9 bits (65), Expect = 9.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 584 NQTKWLEMAIMNIASSGKFSSDRTITEYAREIWG--VEPSYEKL 625
N+ +L A+ I +G ++R + Y + WG V+P +E+L
Sbjct: 439 NEEGFLN-ALAEIVRTGVTPAERLLELYEGK-WGRSVDPVFEEL 480
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,700,088
Number of extensions: 3405841
Number of successful extensions: 3129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3109
Number of HSP's successfully gapped: 69
Length of query: 635
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 532
Effective length of database: 6,369,140
Effective search space: 3388382480
Effective search space used: 3388382480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)