RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17283
(635 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 392 bits (1010), Expect = e-127
Identities = 142/216 (65%), Positives = 169/216 (78%), Gaps = 8/216 (3%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
L WD +AW++TVKTCAYTNHTVLPEALERWPV L+E LLPRH+QIIY IN
Sbjct: 348 LDWD--------KAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRF 399
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRD 487
L V A FP D+DR+RRMSL+EE KR+NMAHL I GSHAVNGVA IHSEI+K IF+D
Sbjct: 400 LNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKD 459
Query: 488 FYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAF 547
FYEL P KFQNKTNGITPRRWL+LCNP LA++IAE+IGE++I L+QL +L Y D AF
Sbjct: 460 FYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAF 519
Query: 548 QREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
R+V KVKQENK+K A Y+E+EY + +N S+FD+Q
Sbjct: 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQ 555
Score = 322 bits (827), Expect = e-100
Identities = 124/178 (69%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L+ N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQDIIRRF++
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKS 302
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
SK ++ FD FP+KVAIQLNDTHPSLAIPELMRVLVD+E L+WDKAW++TVKTCA
Sbjct: 303 SKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCA 362
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQ-VKRIHEYKRQLLNALHII 223
YTNHTVLPEALERWPV L+E LLPRH+QIIY IN L V L + ++
Sbjct: 363 YTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLV 420
Score = 314 bits (808), Expect = 4e-97
Identities = 108/204 (52%), Positives = 137/204 (67%), Gaps = 37/204 (18%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
QVKRIHEYKRQLLN LH+ITLYNRIKK P PRT+MIGGKAAPGY+ AK IIKLI +
Sbjct: 555 QVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITA 614
Query: 265 VARVVNNDPDVGDKLKVVFL-------------------------------------LNG 287
+ VVN+DP VGD+L+V+FL LNG
Sbjct: 615 IGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNG 674
Query: 288 ALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI 347
ALTIGT+DGANVEMAEE G +N FIFGM V+ V+ L ++GY+A YY+ PEL+ +++Q+
Sbjct: 675 ALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQL 734
Query: 348 TNGFFSPENPDEFKDLSDILLKWD 371
++GFFSP+ PD FKD+ ++L+ D
Sbjct: 735 SSGFFSPKQPDLFKDIVNMLMHHD 758
Score = 112 bits (282), Expect = 7e-26
Identities = 41/50 (82%), Positives = 43/50 (86%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDSMATLGL+AYGYGIRYE+GIF QKI G Q EE DDWLRY N
Sbjct: 127 RLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGN 176
Score = 90.3 bits (225), Expect = 7e-19
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPSYEKLP 626
+N +W M I NIA+SGKFSSDRTI +YAREIWGVEPS ++LP
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLP 824
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 386 bits (993), Expect = e-124
Identities = 89/279 (31%), Positives = 124/279 (44%), Gaps = 65/279 (23%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN---------- 51
RLAACFLDS T GYG+ Y +G+F Q G Q E+PD W
Sbjct: 118 RLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQ 177
Query: 52 -----DGDYIQA------------------------------------------VLDRNL 64
D +A +++R
Sbjct: 178 LVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWKAEPWEEFDYDAFNAQRFTDAIIERER 237
Query: 65 AENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFPE 124
+I RVLYPND + GK+LR++Q+YF +A+LQ +I+ F E
Sbjct: 238 VSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHL--------AHHKDLSNFAE 289
Query: 125 KVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTL 184
++QLNDTHP LAIPELMR+L+D + W+++W I KT AYTNHTVL EALE+W +
Sbjct: 290 FHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQI 349
Query: 185 MENLLPRHMQIIYHINFLHLQVKRIHEYKRQLLNALHII 223
+ L R +II I+ + + +N + I
Sbjct: 350 FQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPI 388
Score = 370 bits (953), Expect = e-118
Identities = 83/217 (38%), Positives = 128/217 (58%), Gaps = 13/217 (5%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
+ W+ ++W I KT AYTNHTVL EALE+W + + L R +II I+
Sbjct: 317 MGWE--------ESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRD 487
A D + + RM+ I+ V+MA ++ ++++NGVA +H+EIIK + D
Sbjct: 369 RLER-AADGLDEETINRMAPIQH---GTVHMAWIACYAAYSINGVAALHTEIIKAETLAD 424
Query: 488 FYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIG-EDWIIHLEQLAQLKQYAKDPA 546
+Y L PEKF NKTNG+TPRRWL + NP L+D++ G +DW+ L++L +L+ YA D +
Sbjct: 425 WYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKS 484
Query: 547 FQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
E+ +K NK A++I + I+++ SIFD+Q
Sbjct: 485 VLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQ 521
Score = 307 bits (789), Expect = 1e-94
Identities = 81/210 (38%), Positives = 114/210 (54%), Gaps = 38/210 (18%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
Q+KR+HEYKRQL+NAL+++ LY RIK++ RT++ G KAAPGY AK IIKLI S
Sbjct: 521 QIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINS 580
Query: 265 VARVVNNDPDVGDKLKVVFL-------------------------------------LNG 287
+A +VNNDP+V LKVVF+ +NG
Sbjct: 581 IADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNG 640
Query: 288 ALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI 347
ALT+GT+DGANVE+ + +G +N +IFG V+++ L ++ Y Y P LK +D +
Sbjct: 641 ALTLGTMDGANVEIVDSVGEENAYIFGARVEELPAL-RESYKPYELYETVPGLKRALDAL 699
Query: 348 TNGFFSPENPDEFKDLSDILLKWDSENPID 377
NG + N F DL L+ ++ D
Sbjct: 700 DNGTLNDNNSGLFYDLKHSLIHGYGKDASD 729
Score = 84.5 bits (210), Expect = 4e-17
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 582 MQNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEPS 621
+ W MA +NI SG+FSSDRTI +YA EIW +EP+
Sbjct: 752 ASDPLGWARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 382 bits (984), Expect = e-123
Identities = 93/216 (43%), Positives = 145/216 (67%), Gaps = 11/216 (5%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
+ WD AW IT KT AYTNHT++PEALERW V L++ LLPRHMQII IN
Sbjct: 327 MSWD--------DAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFRD 487
V +P D +++++ + K+V+MA+L +VG AVNGVA +HS+++ D+F +
Sbjct: 379 KTLVEKTWPGDEKVWAKLAVVHD---KQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPE 435
Query: 488 FYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAF 547
+++L P KF N TNGITPRRW+ CNP+LA ++ + + ++W L+QL L+++A D F
Sbjct: 436 YHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKF 495
Query: 548 QREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQ 583
+++ ++KQ NK++LA++++ I++N +IFD+Q
Sbjct: 496 RQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQ 531
Score = 316 bits (812), Expect = 7e-98
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 9/178 (5%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L NDGD+++A AE +++VLYPNDN F GK+LRL Q+YF CA ++ DI+RR
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHH- 288
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
+ + IQLNDTHP++AIPEL+RVL+D + WD AW IT KT A
Sbjct: 289 -------LAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFA 341
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQ-VKRIHEYKRQLLNALHII 223
YTNHT++PEALERW V L++ LLPRHMQII IN V++ ++ L ++
Sbjct: 342 YTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVV 399
Score = 311 bits (799), Expect = 4e-96
Identities = 89/202 (44%), Positives = 115/202 (56%), Gaps = 37/202 (18%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
Q+KR+HEYKRQ LN LHI+ LY I++NP+ PR + G KAAPGYY AK II I
Sbjct: 531 QIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINK 590
Query: 265 VARVVNNDPDVGDKLKVVFL-------------------------------------LNG 287
VA V+NNDP VGDKLKVVFL LNG
Sbjct: 591 VADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNG 650
Query: 288 ALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI 347
ALT+GTLDGANVE+AE++G +NIFIFG TV+QV+ + KGYD + + L V+ ++
Sbjct: 651 ALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKEL 710
Query: 348 TNGFFSPENPDEFKDLSDILLK 369
+G +S + F + + K
Sbjct: 711 ESGKYSDGDKHAFDQMLHSIGK 732
Score = 114 bits (288), Expect = 1e-26
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACFLDSMAT+G SA GYG+ Y+YG+F Q +G+Q E PDDW R
Sbjct: 117 RLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNY 166
Score = 82.2 bits (204), Expect = 2e-16
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 583 QNQTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVE 619
++Q W AI+N A G FSSDR+I +Y IW +
Sbjct: 759 RDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAK 795
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 368 bits (948), Expect = e-117
Identities = 105/227 (46%), Positives = 150/227 (66%), Gaps = 19/227 (8%)
Query: 368 LKWDSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLH 427
L W +AWDI KT AYTNHTV+ EALE+WP L +LLPRH++IIY IN+
Sbjct: 387 LDWH--------EAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFF 438
Query: 428 LQNVLAKFPNDLDRMRRMSLIEEDG-DKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIFR 486
L++V KFP D+D + R+S+IEE+ ++++ MA L+IVGSH VNGV +HSE+IK IF+
Sbjct: 439 LEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFK 498
Query: 487 DFYEL-TPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIG---EDWIIHLEQLAQLKQYA 542
DF + P KF N TNGITPRRWL NPSLA +I+E + E++++ + +L QL++Y
Sbjct: 499 DFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYV 558
Query: 543 KDPAFQREVFKVKQENKMKLAQYIEKEY------HIKVNAASIFDMQ 583
+D F ++ +VK NK++L I+KE + + ++FDMQ
Sbjct: 559 EDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQ 605
Score = 316 bits (812), Expect = 3e-97
Identities = 98/178 (55%), Positives = 125/178 (70%), Gaps = 9/178 (5%)
Query: 47 LRYVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQDIIRRFRT 106
L N+GDY +V + AE+I+ VLYPNDN GKELRLKQ+YF CAA+L DI+RRF+
Sbjct: 290 LNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK- 348
Query: 107 SKSVAEIKDKSAFDKFPEKVAIQLNDTHPSLAIPELMRVLVDVEGLEWDKAWDITVKTCA 166
K K + +FP++VAIQLNDTHP+LAI EL RVLVD+E L+W +AWDI KT A
Sbjct: 349 -------KSKRPWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFA 401
Query: 167 YTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQ-VKRIHEYKRQLLNALHII 223
YTNHTV+ EALE+WP L +LLPRH++IIY IN+ L+ V + LL+ + II
Sbjct: 402 YTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISII 459
Score = 284 bits (730), Expect = 2e-85
Identities = 83/211 (39%), Positives = 103/211 (48%), Gaps = 50/211 (23%)
Query: 205 QVKRIHEYKRQLLNALHIITLYNRIKK---------NPKGKFTPRTIMIGGKAAPGYYTA 255
QVKRIHEYKRQ LN II Y +K K+ + + GGK+APGYY A
Sbjct: 605 QVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMA 664
Query: 256 KKIIKLICSVARVVNNDPDVGDKLKVVFL------------------------------- 284
K IIKLI VA +VNND + LKVVF+
Sbjct: 665 KLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGT 724
Query: 285 ------LNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKK-GYDAPSYYNAN 337
+NG L IGT+DGANVE+ E+G DN+F+FG + VEEL+ Y
Sbjct: 725 SNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLP--- 781
Query: 338 PELKLVVDQITNGFFSPENPDEFKDLSDILL 368
L V+ I +G FSPENP+EFK L D +
Sbjct: 782 SSLDSVLSYIESGQFSPENPNEFKPLVDSIK 812
Score = 114 bits (289), Expect = 9e-27
Identities = 35/50 (70%), Positives = 40/50 (80%)
Query: 2 RLAACFLDSMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVN 51
RLAACF+DSMAT G+ A+GYG+RYEYGIFAQKI +G Q E PD WL N
Sbjct: 168 RLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGN 217
Score = 81.1 bits (201), Expect = 5e-16
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 585 QTKWLEMAIMNIASSGKFSSDRTITEYAREIWGVEP 620
+++WL+ +++++A+ G FSSDR I EY+ IW VEP
Sbjct: 842 RSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEP 877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 4e-09
Identities = 91/659 (13%), Positives = 180/659 (27%), Gaps = 238/659 (36%)
Query: 83 ELRLKQEYFMCAATLQDIIRRFRTSKSVAEIKD--KSAFDKFPEKVAIQLNDTHPSLAIP 140
+ + + L F + +++D KS K E++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTL 65
Query: 141 ELMRVLVD----------VEGLEWDKAWDITVKTCAYTNHTVLPEALERWPVTLMENLLP 190
L L+ E L + + ++ P + R + + L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMS----PIKTEQRQPSMMTRMYIEQRDRL-- 119
Query: 191 RHMQIIYHIN--FLHLQVKRIHEYKRQLLNALH------IITLYNRIKKNPKGKFTPRTI 242
Y+ N F V R+ Y +L AL + + G
Sbjct: 120 ------YNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLID--------G------- 157
Query: 243 MIG-GKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV-VFLLNGALTIGTLDGAN-- 298
++G GK + V V K+ +F LN + +
Sbjct: 158 VLGSGKTW-----------VALDVCL----SYKVQCKMDFKIFWLN----LKNCNSPETV 198
Query: 299 VEMAEEM----------GNDNIFIFGMTVDQVEELKKKGYDAPSYYNA--------NPEL 340
+EM +++ +D+ + + ++ ++ + Y N N +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 341 ----------------KLVVDQITNG---------FFSPENPDEFKDLSDILLKWDSENP 375
K V D ++ PDE K L LLK+ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKY-LDCR 314
Query: 376 IDSL--QAWDITVKTCAYTNHTVLPEALERWPVTL------------------MENLLPR 415
L + + + ++ E++ T + L P
Sbjct: 315 PQDLPREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 416 HMQIIYHINFLHLQNVLAKFPND-----------------------LDRMRRMSLIEEDG 452
+ ++ L+ FP ++++ + SL+E+
Sbjct: 370 EYRKMFD--------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 453 DKRVNMAH-LSIVGSHAVNGVAFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWLLL 511
+ + + + +H I+ H Y + P+ F + + + P
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDH------YNI-PKTFDS--DDLIP------ 466
Query: 512 CNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLAQYIEKEYH 571
P L IG H L ++ + F R VF
Sbjct: 467 --PYLDQYFYSHIGH----H---LKNIEHPERMTLF-RMVF------------------- 497
Query: 572 IKVNAASIFDMQNQTKWLEMAIMN--IASSGKFSSDRTITE---YAREIWGVEPSYEKL 625
D ++LE I + A + S T+ + Y I +P YE+L
Sbjct: 498 --------LDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 52.5 bits (125), Expect = 3e-07
Identities = 50/319 (15%), Positives = 88/319 (27%), Gaps = 106/319 (33%)
Query: 10 SMATLGLSAYGYGIRYEYGIFAQKIKNGEQTEEPDDWLRYVNDGDYIQAVLDRNLAENIS 69
+A +Y + ++ IF +KN P+ L + + +D N
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQK---LLYQIDPNWTSRSD 218
Query: 70 RVL-YPNDNNFGGKELR---LKQEYFMCAATLQD-----IIRRF----RT-----SKSVA 111
+ ELR + Y C L + F + K V
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 112 EI-------------------KDKSA--FDKF----PEKVAIQLNDTHP---SLAIPELM 143
+ D+ K+ P+ + ++ T+P S+ I E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESI 337
Query: 144 RVLVDVEGLEWD-------KAWDITVKTC-----------AYTNHTVLPE-------ALE 178
R + WD +++ + +V P L
Sbjct: 338 RDGLA----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 179 R-WP----------VTLMEN--LLPRHM-QIIYHINFLHLQVKRIHEYKRQLLN--ALH- 221
W V + L+ + + I ++L E K +L N ALH
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL------ELKVKLENEYALHR 447
Query: 222 -IITLYNRIKKNPKGKFTP 239
I+ YN K P
Sbjct: 448 SIVDHYNIPKTFDSDDLIP 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 79/526 (15%), Positives = 163/526 (30%), Gaps = 177/526 (33%)
Query: 133 THPSLAIPELMRVLVDVEGLEWDKA---WDITVKTCAYTNHTVLPEALERW-----PVTL 184
+H SL ++ V + A + K LPE E + P T
Sbjct: 12 SHGSL------EHVLLVPTASFFIASQLQEQFNKI--------LPEPTEGFAADDEPTTP 57
Query: 185 MENLLPRHMQIIYHI-------NFLHLQVKRIHEYKRQLL--NALHIITLYNRIKKNPKG 235
E L+ + + + + F + + E++ L N +H L ++ +
Sbjct: 58 AE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--ALAAKLLQENDT 114
Query: 236 KFTPRTIMIGGKAAPGYYTAKKIIK----------LICSVARVVNNDPDVGD-KLKVVFL 284
+I K Y TA+ + K L +V G+ +L +F
Sbjct: 115 TLVKTKELI--KN---YITARIMAKRPFDKKSNSALFRAVGE--------GNAQLVAIF- 160
Query: 285 LNG-ALTIGTLDGANVEMAE--EMGNDNI--FIFGMTVDQVEELKKKGYDAPSYYNA--- 336
G T + E+ + + + + I + + EL + DA +
Sbjct: 161 -GGQGNTDDYFE----ELRDLYQTYHVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQGLN 214
Query: 337 ------NPELK---------------LVVDQITN--------GFFSPENPDEFKDL---- 363
NP + V Q+ + GF P E +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF----TPGELRSYLKGA 270
Query: 364 ----SDILL--------KWDS--ENPIDSLQA--WDITVKTCAYTNHTVLPEALERWPVT 407
++ W+S + ++ + I V+ +T LP ++ +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLE 329
Query: 408 LMENLLPRHMQIIYHINFLHLQNVLAKFPNDLDRMRR--MSLIEEDGDKRVNMA------ 459
E + P M I ++ +Q+ + K + L ++ +SL+ +G K + ++
Sbjct: 330 NNEGV-PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVSGPPQSL 386
Query: 460 ---HLSIVGSHAVNG------------VAFI----------HS-------EIIKHDIFRD 487
+L++ + A +G + F HS ++I D+ ++
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 488 FYELTPEKFQ----NKTNGITPRRWLLLCNPSLADVIAEK-IGEDW 528
+ Q + +G R + + D I + W
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV--KW 490
Score = 46.6 bits (110), Expect = 3e-05
Identities = 49/305 (16%), Positives = 93/305 (30%), Gaps = 81/305 (26%)
Query: 207 KRIHEYKRQLL--NALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAKKIIKLICS 264
R + + + L I+ NP TI GG+ G + +I
Sbjct: 1647 NRADNHFKDTYGFSILDIV------INNPVNL----TIHFGGEK--GKRIRENYSAMIF- 1693
Query: 265 VARVVNNDPDVGDKLKVVFL-LNGALTIGTLDGANVEMAEEMGNDNIF----IFGMTVDQ 319
D K + +F +N T T + + F + M
Sbjct: 1694 -----ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SATQFTQPALTLMEKAA 1743
Query: 320 VEELKKKGY-DAPSY--------YNANPELKLVVDQITNGFFSPENPDEFKDLSDIL--- 367
E+LK KG A + Y A L S + L +++
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAA-----LAS---LADVMS------IESLVEVVFYR 1789
Query: 368 -LKWDSENPIDSLQAWDITVKTCAYTNHTVLP----EALERWPVTLMENLLPRHMQIIYH 422
+ P D L + + A V EAL+ ++E + R ++
Sbjct: 1790 GMTMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEALQY----VVERVGKRTGWLVEI 1843
Query: 423 INF--LHLQNVLAKFPNDLDRMRRMSLIEEDGDKRVNMAHLSIVGSHAVNGVAFIHSEII 480
+N+ + Q V A LD + +++ +++++ L + E +
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTV--TNVLNFIKLQKIDIIELQ---------KSL-SLEEV 1891
Query: 481 KHDIF 485
+ +F
Sbjct: 1892 EGHLF 1896
Score = 45.4 bits (107), Expect = 5e-05
Identities = 52/326 (15%), Positives = 89/326 (27%), Gaps = 109/326 (33%)
Query: 3 LAACFL------DSMATLGLSAYGY----GIR---------YEYGIFAQKIKNGEQTEEP 43
+ A + +S A G+R I ++N E P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 44 ------------DDWLRYVNDGDYIQAVLDRNLAENISRVLYPN-DNNF--GGKELRLKQ 88
D++ N + L IS V N N G
Sbjct: 338 MLSISNLTQEQVQDYVNKTN------SHLPAGKQVEISLV---NGAKNLVVSGP------ 382
Query: 89 EYFMCAATLQDIIRRFRTSKSVAEIKDKSAFDKFP---EKVAIQ---LNDT---HPSLAI 139
+L + R +K+ + D+S + P K+ L H L +
Sbjct: 383 -----PQSLYGLNLTLRKAKAPSG-LDQS---RIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 140 PELMRVLVDVE--GLEWD-KAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRHMQII 196
P + D+ + ++ K I V + + R L ++ R + I
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDL------R---VLSGSISERIVDCI 483
Query: 197 YHINFLHLQVKRIHEYKRQLLNALHIITLYNRIKKNPKGKFTPRTIMIGGKAAPGYYTAK 256
+ A HI+ F P GG + G T +
Sbjct: 484 IR--------LPVKWETTTQFKATHILD------------FGP-----GGASGLGVLTHR 518
Query: 257 KI----IKLICSVARVVNNDPDVGDK 278
+++I + +N D D G K
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 40.0 bits (93), Expect = 0.002
Identities = 41/267 (15%), Positives = 78/267 (29%), Gaps = 94/267 (35%)
Query: 330 APSYYNANPELKLVVDQITNGFFS--PENPDEFKDLSDILLKWDSENPIDSLQAWDITVK 387
S++ A+ +L+ +Q F PE + F + P ++ K
Sbjct: 24 TASFFIAS-QLQ---EQ----FNKILPEPTEGF---------AADDEPTTPA---ELVGK 63
Query: 388 TCAYTNHTVLPEALERWPVTLMENLLPRHMQIIYHINFLHLQNV---LAKFPNDLDR--M 442
Y + V P + ++ ++ L + +L ++ AK + D +
Sbjct: 64 FLGYVSSLVEPSKVGQFD-QVLNLCL-TE----FENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 443 RRMSLIE------EDGDKRVNMAHLSIVGSHAVNGVAFIHSEIIKHDIF----------- 485
+ LI+ + + S + G A + + IF
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA------IFGGQGNTDDYFE 171
Query: 486 --RDFYE----------------LTPEKFQNK------TNGITPRRWLLLCNPSLADVIA 521
RD Y+ L+ T G+ WL NPS
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE--NPSNTP--- 226
Query: 522 EKIGEDWIIH------LEQLAQLKQYA 542
+D+++ L + QL Y
Sbjct: 227 ---DKDYLLSIPISCPLIGVIQLAHYV 250
Score = 35.0 bits (80), Expect = 0.092
Identities = 53/390 (13%), Positives = 119/390 (30%), Gaps = 126/390 (32%)
Query: 311 FIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKW 370
F+ G VE K +D L L + + N + D+ + K
Sbjct: 64 FL-GYVSSLVEPSKVGQFD--------QVLNLCLTEFENCYLE------GNDIHALAAKL 108
Query: 371 DSENPIDSLQAWDITVKTCAYTNHTVLPEALERWPVTLMENLLPRH-------------- 416
EN ++ ++ +K T + ++ + L R
Sbjct: 109 LQENDTTLVKTKEL-IK-NYITARIMAKRPFDKKS----NSALFRAVGEGNAQLVAIFGG 162
Query: 417 ----------MQIIYHI------NFL-----HLQNVLAKFPNDLDRM--RRMSLIE--ED 451
++ +Y + + L L + D +++ + ++++E E+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLEN 221
Query: 452 GDKRVNMAHL-SIVGSHAVNGV-AFIHSEIIKHDIFRDFYELTPEKFQNKTNGITPRRWL 509
+ +L SI S + GV H + + TP + ++ G T
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAH-----YVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 510 LLCNPSLADVIAEKIGEDW---------------IIHLE-QLA--------QLKQYAKD- 544
L+ A IAE + W I + A + + + +
Sbjct: 277 LV----TAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 545 ----PAFQREVFKVKQENKMKLAQYIEKEYHIKVNAASIFDMQNQTKWLEMAIMNIASSG 600
P+ + + ++ Y+ K N+ K +E++++N
Sbjct: 331 NEGVPSPM---LSISNLTQEQVQDYVN-----KTNSHL-----PAGKQVEISLVN----- 372
Query: 601 KFSSDRT--ITEYAREIWGVEPSYEKLPAP 628
+ ++ + ++G+ + K AP
Sbjct: 373 ---GAKNLVVSGPPQSLYGLNLTLRKAKAP 399
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.083
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 522 EKIGEDWIIHLEQLAQLKQYAKD--PAF 547
EK + L+ A LK YA D PA
Sbjct: 18 EK---QALKKLQ--ASLKLYADDSAPAL 40
Score = 33.0 bits (74), Expect = 0.15
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 115 DKSAFDKFPEKVAIQLNDTHPSLAI 139
+K A K + + +D+ P+LAI
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 32.1 bits (73), Expect = 0.66
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 18/57 (31%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS--------------LADVIAEKIGEDWII 530
++ + P + NPS + +++AE + I+
Sbjct: 231 WQYPDSELDKL---KDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMIL 284
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 31.4 bits (72), Expect = 0.97
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
L + R L NP+
Sbjct: 165 AGLDLTGLEEA---FKAGARVFLFSNPN 189
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 30.6 bits (70), Expect = 1.6
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
++++PE+ + ITP+ + L+ PS
Sbjct: 149 FKVSPEQIRQA---ITPKTKLLVFNTPS 173
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 30.6 bits (70), Expect = 1.7
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
+ PE+ + ITPR + L++ +P+
Sbjct: 150 FVPDPERVRRA---ITPRTKALVVNSPN 174
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 30.2 bits (69), Expect = 2.5
Identities = 3/28 (10%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
++ + E+ + + + + +L+ +P+
Sbjct: 160 FQPSLEEVEGL---LVGKTKAVLINSPN 184
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 29.4 bits (67), Expect = 3.6
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
++ + + K IT R + + + NP+
Sbjct: 160 WQPDIDDIRKK---ITDRTKAIAVINPN 184
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 28.8 bits (64), Expect = 3.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 14 LGLSAYGYGIRYEYGIFAQKIKNGEQTEEP-----DDWLR 48
+GL YG G+ G + I N E++ E DD R
Sbjct: 147 VGL--YGNGVVTRSGAYVSAIANTEKSIEDNPEIEDDIFR 184
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex,
MBP 2 fold, ABC transporter fold, thermophilic protein;
HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Length = 409
Score = 29.3 bits (66), Expect = 4.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 328 YDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDIL 367
YD P+ + +P LK + N P P + LS+I+
Sbjct: 338 YDDPAVVSKSPHLKELRAVFENAVPRPIVP-YYPQLSEII 376
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 29.5 bits (67), Expect = 4.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 492 TPEKFQNKTNGITPR-RWLLLCNPS 515
P+ ++ I R + ++L NP
Sbjct: 163 IPQNLESF---INERTKGIVLSNPC 184
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 28.7 bits (64), Expect = 6.3
Identities = 4/49 (8%), Positives = 12/49 (24%), Gaps = 16/49 (32%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS------------LADVIAEKI 524
+ + N P ++ +P+ I + +
Sbjct: 182 WAGNAANYVNV---SNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMV 227
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 28.9 bits (65), Expect = 7.2
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 507 RWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLA-QY 565
L NP A I +K+ E + + ++ + A
Sbjct: 630 TAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKALAAALGQ 689
Query: 566 IEKEY 570
IEK++
Sbjct: 690 IEKQF 694
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.9 bits (63), Expect = 7.4
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 242 IMIGGKAAPGYYTAKKIIKLICSVARVVNNDPD----VGDKLKVVFLLNGALTIGTLDGA 297
++I G YY A+ ++ V ++N D + KLK + L A
Sbjct: 3 VIIIGGETTAYYLARSMLSRKYGV-VIINKDRELCEEFAKKLKATIIHGDGSHKEILRDA 61
Query: 298 NVEMAEEM----GND--NIFI 312
V + + D N+FI
Sbjct: 62 EVSKNDVVVILTPRDEVNLFI 82
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 28.9 bits (65), Expect = 7.6
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 507 RWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQYAKDPAFQREVFKVKQENKMKLA-QY 565
L NP A I +K+ E + + ++ + A
Sbjct: 979 TAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMASTGSTGSAIDENKQKALAAALGQ 1038
Query: 566 IEKEY 570
IEK++
Sbjct: 1039 IEKQF 1043
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 28.4 bits (64), Expect = 8.8
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
+E ++ + + + L++ NPS
Sbjct: 163 WEADLDEIRRL---KDDKTKLLIVTNPS 187
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 28.3 bits (63), Expect = 9.3
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
+E+ P + + P + L++ NP+
Sbjct: 230 WEIEPNEIEKL---KDPSIKALIVVNPT 254
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 28.0 bits (63), Expect = 9.7
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 489 YELTPEKFQNKTNGITPR-RWLLLCNPS 515
+E+ ++ + I + L++ NPS
Sbjct: 177 WEIDLKQLEYL---IDEKTACLIVNNPS 201
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.3 bits (64), Expect = 9.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 52 DGDYIQAVLDRN 63
DG + A LDRN
Sbjct: 336 DGKIVGAGLDRN 347
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 28.4 bits (64), Expect = 9.8
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 481 KHDIFRDFYELTPEKFQNKTNGITPRRWLLLCNPSLADVIAEKIGEDWIIHLEQLAQLKQ 540
++ + K+ K + + + K W+ H++ + QL+Q
Sbjct: 684 PDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSK----WMDHIDAMDQLRQ 739
Query: 541 ------YA-KDP--AFQREVFK 553
YA +P +Q E F
Sbjct: 740 GIHLRAYAQTNPLREYQMEGFA 761
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,298,388
Number of extensions: 651019
Number of successful extensions: 1583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 66
Length of query: 635
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 536
Effective length of database: 3,937,614
Effective search space: 2110561104
Effective search space used: 2110561104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)