BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17284
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 653 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 713 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 770
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 583 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 642
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 643 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 683
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 654 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 713
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 714 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 771
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 584 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 643
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 644 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 684
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 653 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 713 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 770
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 583 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 642
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 643 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 683
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 653 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 713 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 770
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 583 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 642
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 643 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 683
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 655 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 714
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 715 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 772
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 585 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 644
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 645 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 685
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 631 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 690
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 691 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 748
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 561 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 620
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 621 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 661
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 654 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 713
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 714 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 771
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 584 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 643
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 644 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 684
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 180 bits (457), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPA DLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N+FIFG
Sbjct: 656 AEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFG 715
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M +D V L KKGY+A YY A PELKLV+DQI NGFFSP+ PD FKD+ ++L DR
Sbjct: 716 MRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDR 773
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ ++ K + RT++IGGKAAPGY+ AK IIKLI SVA VVNNDP VG KLKV
Sbjct: 586 VITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKV 645
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPA DLSEQISTAGTEASGTGNMKFM+
Sbjct: 646 IFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFML 686
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 701
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 702 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 649
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 650 DLSEQISTAGTEASGTGNMKFML 672
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 701
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 702 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 649
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 650 DLSEQISTAGTEASGTGNMKFML 672
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 644 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 703
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 704 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 761
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 592 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 651
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 652 DLSEQISTAGTEASGTGNMKFML 674
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 701
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 702 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 649
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 650 DLSEQISTAGTEASGTGNMKFML 672
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 661 DLSEQISTAGTEASGTGNMKFML 683
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 661 DLSEQISTAGTEASGTGNMKFML 683
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGK APGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKPAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 661 DLSEQISTAGTEASGTGNMKFML 683
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 661 DLSEQISTAGTEASGTGNMKFML 683
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 661 DLSEQISTAGTEASGTGNMKFML 683
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 641 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 700
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 701 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 758
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 589 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 648
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNMKFM+
Sbjct: 649 DLSEQISTAGTEASGTGNMKFML 671
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 654 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 713
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V++L ++GY+A YY+ PEL+ V++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 714 MRVEDVDKLDQRGYNAQEYYDRIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 771
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 83/101 (82%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
+IT++ +R + RT+MIGGKAAPGY+ AK II+L+ ++ VVN+DP VGD+L+V
Sbjct: 584 VITLYNRIKREPNKFFVPRTVMIGGKAAPGYHMAKMIIRLVTAIGDVVNHDPAVGDRLRV 643
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
+FLENYRV+LAE +IPAADLSEQISTAGTEASGTGNM FM+
Sbjct: 644 IFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFML 684
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 99/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 642 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 701
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 702 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 649
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNM FM+
Sbjct: 650 DLSEQISTAGTEASGTGNMXFML 672
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 99/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNM FM+
Sbjct: 661 DLSEQISTAGTEASGTGNMXFML 683
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 99/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 652 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 711
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 712 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 769
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 600 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 659
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNM FM+
Sbjct: 660 DLSEQISTAGTEASGTGNMXFML 682
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 99/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 654 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 713
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 714 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 771
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 602 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 661
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNM FM+
Sbjct: 662 DLSEQISTAGTEASGTGNMXFML 684
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 99/118 (83%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNM FMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 653 AEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 712
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 713 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 770
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +IPAA
Sbjct: 601 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAA 660
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
DLSEQISTAGTEASGTGNM FM+
Sbjct: 661 DLSEQISTAGTEASGTGNMXFML 683
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 80/112 (71%), Gaps = 2/112 (1%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
KAE+IIPA+DLSE ISTAGTEASGT NMKF++NG L IGT+DGANVE+ E+G DN+F+F
Sbjct: 700 KAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLF 759
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSD 113
G + VEEL+ P + L V+ I +G FSPENP+EFK L D
Sbjct: 760 GNLSENVEELRYNHQYHPQ--DLPSSLDSVLSYIESGQFSPENPNEFKPLVD 809
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 67/87 (77%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
K+ + + GGK+APGYY AK IIKLI VA +VNND + LKVVF+ +Y V+ AE+I
Sbjct: 645 KYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEII 704
Query: 259 IPAADLSEQISTAGTEASGTGNMKFMI 285
IPA+DLSE ISTAGTEASGT NMKF++
Sbjct: 705 IPASDLSEHISTAGTEASGTSNMKFVM 731
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 618 AEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG 677
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDL 111
TV+QV+ + KGYD + + L V+ ++ +G +S + F +
Sbjct: 678 HTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQM 726
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 64/83 (77%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AE +IPAA
Sbjct: 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAA 625
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
D+SEQISTAG EASGTGNMK +
Sbjct: 626 DISEQISTAGKEASGTGNMKLAL 648
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 618 AEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG 677
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDL 111
TV+QV+ + KGYD + + L V+ ++ +G +S + F +
Sbjct: 678 HTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQM 726
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 64/83 (77%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AE +IPAA
Sbjct: 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAA 625
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
D+SEQISTAG EASGTGNMK +
Sbjct: 626 DISEQISTAGKEASGTGNMKLAL 648
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 618 AEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG 677
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDL 111
TV QV+ + KGYD + + L V+ ++ +G +S + F +
Sbjct: 678 HTVKQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQM 726
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 64/83 (77%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AE +IPAA
Sbjct: 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAA 625
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
D+SEQISTAG EASGTGNMK +
Sbjct: 626 DISEQISTAGKEASGTGNMKLAL 648
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 619 AEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG 678
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDL 111
TV QV+ + KGYD + + L V+ ++ +G +S + F +
Sbjct: 679 HTVKQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQM 727
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 64/83 (77%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AE +IPAA
Sbjct: 567 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAA 626
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
D+SEQISTAG EASGTGNMK +
Sbjct: 627 DISEQISTAGKEASGTGNMKLAL 649
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 68/83 (81%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262
RT++ G KAAPGY AK IIKLI S+A +VNNDP+V LKVVF+ENY V+ AE I+PA+
Sbjct: 556 RTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPAS 615
Query: 263 DLSEQISTAGTEASGTGNMKFMI 285
D+SEQISTAG EASGT NMKFM+
Sbjct: 616 DVSEQISTAGKEASGTSNMKFMM 638
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE I+PA+D+SEQISTAG EASGT NMKFM+NGALT+GT+DGANVE+ + +G +N +IFG
Sbjct: 608 AEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFG 667
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK 117
V+++ L ++ Y Y P LK +D + NG + N F DL L+
Sbjct: 668 ARVEELPAL-RESYKPYELYETVPGLKRALDALDNGTLNDNNSGLFYDLKHSLIH 721
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 94 QITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQ 134
+I + F NP++F+D D +++ +P AI + GP P TQ
Sbjct: 552 KIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGINGPNPKTQ 592
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 94 QITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQ 134
+I + F NP++F+D D +++ +P AI + GP P TQ
Sbjct: 549 KIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGINGPNPKTQ 589
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 11 DLSEQISTAGTEASGTGN-MKFMLNGALTIGTLDGANVEMAEEMGN-------------- 55
D E+ G+ S +K +L I LDG ++ ++G+
Sbjct: 38 DYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACESF 97
Query: 56 DNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDIL 115
I + + ++EL+K AP+ ++ +P + V D N PE ++ + +
Sbjct: 98 KEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDLEGNRVKGPEKEEKLRQAVKQV 157
Query: 116 LKWDRPGAIPLKG-PVPTTQLVL 137
LK D + PL P+P VL
Sbjct: 158 LKCDVTQSQPLGAVPLPPADCVL 180
>pdb|2EKC|A Chain A, Structural Study Of Project Id Aq_1548 From Aquifex
Aeolicus Vf5
pdb|2EKC|B Chain B, Structural Study Of Project Id Aq_1548 From Aquifex
Aeolicus Vf5
Length = 262
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 43 DGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAP----SYYNA------NPELKLVV 92
DG +++A E+ N F ++ E L+K+ D P +YYN +L
Sbjct: 60 DGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSR 119
Query: 93 DQITNGFFSPE-NPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLV 136
++ +GF P+ P+E ++L ++ K+ +PL P T + +
Sbjct: 120 EKGIDGFIVPDLPPEEAEELKAVMKKYVL-SFVPLGAPTSTRKRI 163
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 214 GYYTAKKIIK---LICSVARVVNNDPDVGDKL---KVVFLEN--YRVTLAELIIPAADLS 265
Y TAK +K LICS A N D D GDK+ + L++ + + AEL L
Sbjct: 61 NYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLC 120
Query: 266 EQISTAG 272
E+I +G
Sbjct: 121 EEIKESG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,287,403
Number of Sequences: 62578
Number of extensions: 334559
Number of successful extensions: 814
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 68
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)