Query psy17284
Match_columns 286
No_of_seqs 272 out of 1607
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04300 GT1_Glycogen_Phosphory 100.0 2.3E-57 4.9E-62 465.6 14.2 219 46-285 407-652 (797)
2 TIGR02093 P_ylase glycogen/sta 100.0 3.2E-57 7E-62 463.2 14.0 217 46-285 404-649 (794)
3 PRK14985 maltodextrin phosphor 100.0 1.3E-56 2.8E-61 458.4 11.9 214 46-285 406-651 (798)
4 PRK14986 glycogen phosphorylas 100.0 2.8E-56 6.1E-61 457.3 14.1 219 46-285 420-665 (815)
5 PF00343 Phosphorylase: Carboh 100.0 1.7E-56 3.7E-61 453.9 7.6 192 75-285 368-566 (713)
6 KOG2099|consensus 100.0 8.6E-55 1.9E-59 425.6 11.6 161 2-162 654-832 (843)
7 TIGR02093 P_ylase glycogen/sta 100.0 1.9E-54 4.2E-59 442.9 12.2 157 2-158 618-793 (794)
8 PRK14985 maltodextrin phosphor 100.0 7.4E-54 1.6E-58 438.2 12.4 158 2-159 620-796 (798)
9 cd04300 GT1_Glycogen_Phosphory 100.0 8.2E-54 1.8E-58 439.4 12.2 157 2-158 621-796 (797)
10 PRK14986 glycogen phosphorylas 100.0 4.1E-53 8.9E-58 434.0 12.7 158 2-159 634-810 (815)
11 KOG2099|consensus 100.0 2.2E-53 4.7E-58 415.7 7.0 219 46-285 440-685 (843)
12 PF00343 Phosphorylase: Carboh 100.0 1.1E-51 2.3E-56 418.9 6.2 158 2-159 535-711 (713)
13 COG0058 GlgP Glucan phosphoryl 100.0 8.4E-51 1.8E-55 413.1 11.8 203 59-285 372-600 (750)
14 COG0058 GlgP Glucan phosphoryl 100.0 2.5E-46 5.5E-51 380.5 8.5 157 2-158 569-747 (750)
15 cd04299 GT1_Glycogen_Phosphory 100.0 1.6E-41 3.5E-46 350.4 12.9 182 73-285 388-590 (778)
16 TIGR02094 more_P_ylases alpha- 100.0 2.1E-37 4.6E-42 313.6 12.1 186 73-285 299-501 (601)
17 cd04299 GT1_Glycogen_Phosphory 99.9 2.9E-25 6.3E-30 230.0 4.8 121 2-157 559-688 (778)
18 TIGR02094 more_P_ylases alpha- 99.9 1.1E-22 2.4E-27 206.5 4.3 121 2-157 470-599 (601)
19 cd03791 GT1_Glycogen_synthase_ 98.1 4.9E-06 1.1E-10 81.4 6.7 110 151-284 282-391 (476)
20 TIGR02095 glgA glycogen/starch 97.7 7.3E-05 1.6E-09 73.7 6.9 110 151-284 277-386 (473)
21 PRK00654 glgA glycogen synthas 97.5 0.00018 4E-09 71.0 6.7 107 153-284 271-377 (466)
22 PRK14098 glycogen synthase; Pr 97.2 0.0009 2E-08 67.0 7.1 111 150-284 292-402 (489)
23 PRK14099 glycogen synthase; Pr 96.8 0.0028 6E-08 63.5 6.9 110 151-284 281-390 (485)
24 COG0297 GlgA Glycogen synthase 96.0 0.012 2.5E-07 59.4 6.0 108 153-284 282-389 (487)
25 PLN02316 synthase/transferase 95.8 0.016 3.4E-07 63.2 6.2 114 151-284 827-940 (1036)
26 cd03791 GT1_Glycogen_synthase_ 95.4 0.018 4E-07 56.3 4.7 46 5-52 366-411 (476)
27 PLN02939 transferase, transfer 94.8 0.062 1.3E-06 58.2 6.8 113 151-284 764-877 (977)
28 cd03805 GT1_ALG2_like This fam 93.6 0.31 6.6E-06 45.8 8.1 105 163-279 209-315 (392)
29 PRK00654 glgA glycogen synthas 91.8 0.3 6.5E-06 48.3 5.6 45 5-51 352-396 (466)
30 TIGR02095 glgA glycogen/starch 91.6 0.29 6.2E-06 48.3 5.2 46 5-52 361-406 (473)
31 cd03792 GT1_Trehalose_phosphor 91.0 1.2 2.6E-05 42.0 8.6 100 161-277 186-287 (372)
32 PRK14098 glycogen synthase; Pr 90.2 0.38 8.2E-06 48.3 4.6 56 4-61 376-433 (489)
33 PF00534 Glycos_transf_1: Glyc 89.7 0.15 3.3E-06 42.3 1.1 101 160-281 10-110 (172)
34 TIGR02149 glgA_Coryne glycogen 89.3 0.71 1.5E-05 43.3 5.4 98 163-280 199-297 (388)
35 cd03821 GT1_Bme6_like This fam 88.7 0.67 1.5E-05 41.6 4.7 100 162-281 200-299 (375)
36 cd03795 GT1_like_4 This family 87.2 0.76 1.6E-05 41.9 4.1 92 164-279 190-281 (357)
37 TIGR02470 sucr_synth sucrose s 87.2 3.1 6.6E-05 44.6 9.0 112 155-279 540-659 (784)
38 cd01635 Glycosyltransferase_GT 87.1 1 2.2E-05 37.8 4.5 90 170-281 109-199 (229)
39 TIGR03449 mycothiol_MshA UDP-N 86.6 1.6 3.5E-05 41.4 6.1 100 163-279 217-318 (405)
40 cd03788 GT1_TPS Trehalose-6-Ph 83.8 6.8 0.00015 39.0 9.3 105 162-271 261-370 (460)
41 KOG2074|consensus 82.4 2.2 4.8E-05 43.2 5.1 166 3-232 138-321 (548)
42 PRK14099 glycogen synthase; Pr 81.4 3.2 6.9E-05 41.7 6.0 47 3-51 363-409 (485)
43 PLN00142 sucrose synthase 81.3 6.2 0.00013 42.5 8.3 108 158-279 566-682 (815)
44 cd03809 GT1_mtfB_like This fam 80.8 3.4 7.3E-05 37.4 5.4 95 163-278 193-287 (365)
45 PRK15484 lipopolysaccharide 1, 80.4 6.6 0.00014 37.6 7.6 94 163-270 191-285 (380)
46 PF00534 Glycos_transf_1: Glyc 80.4 1.6 3.6E-05 36.0 3.0 55 6-64 89-143 (172)
47 cd03819 GT1_WavL_like This fam 79.8 4.4 9.4E-05 37.0 5.9 98 163-279 183-280 (355)
48 cd03822 GT1_ecORF704_like This 79.1 6.8 0.00015 35.4 6.9 93 163-270 183-276 (366)
49 cd03800 GT1_Sucrose_synthase T 78.9 3.8 8.3E-05 38.0 5.3 100 163-279 218-318 (398)
50 cd03808 GT1_cap1E_like This fa 78.7 2.4 5.1E-05 37.7 3.6 95 164-281 187-281 (359)
51 cd03796 GT1_PIG-A_like This fa 77.9 3.3 7.2E-05 39.6 4.7 95 163-279 191-285 (398)
52 cd03806 GT1_ALG11_like This fa 76.3 10 0.00022 37.0 7.7 95 164-271 236-334 (419)
53 cd03812 GT1_CapH_like This fam 75.9 5 0.00011 36.7 5.0 94 162-279 189-282 (358)
54 cd03818 GT1_ExpC_like This fam 73.2 4.9 0.00011 38.3 4.4 96 163-271 209-310 (396)
55 cd03813 GT1_like_3 This family 71.9 7.9 0.00017 38.4 5.7 95 163-278 291-385 (475)
56 cd03807 GT1_WbnK_like This fam 69.5 7 0.00015 34.8 4.3 94 163-279 191-284 (365)
57 cd03811 GT1_WabH_like This fam 69.5 6.7 0.00014 34.6 4.2 94 163-280 187-280 (353)
58 cd04962 GT1_like_5 This family 68.2 7.5 0.00016 35.8 4.4 90 165-279 197-286 (371)
59 cd03801 GT1_YqgM_like This fam 67.6 10 0.00022 33.4 4.9 37 243-281 257-293 (374)
60 PLN02949 transferase, transfer 67.3 22 0.00048 35.6 7.8 94 166-270 269-363 (463)
61 cd03794 GT1_wbuB_like This fam 67.3 10 0.00023 33.9 5.0 88 163-272 218-305 (394)
62 cd03817 GT1_UGDG_like This fam 66.5 11 0.00024 33.7 5.0 95 163-279 200-294 (374)
63 TIGR02472 sucr_P_syn_N sucrose 65.7 14 0.0003 36.1 5.9 103 163-278 246-355 (439)
64 cd03801 GT1_YqgM_like This fam 65.3 7.9 0.00017 34.1 3.8 55 6-64 272-326 (374)
65 PLN02939 transferase, transfer 64.2 14 0.0003 40.6 6.0 47 4-52 851-897 (977)
66 cd04949 GT1_gtfA_like This fam 64.0 11 0.00023 35.2 4.6 52 6-61 275-327 (372)
67 TIGR02400 trehalose_OtsA alpha 63.3 38 0.00082 33.9 8.5 102 165-271 259-365 (456)
68 cd03795 GT1_like_4 This family 62.9 9.7 0.00021 34.6 4.0 57 6-63 260-316 (357)
69 PRK15427 colanic acid biosynth 61.8 22 0.00048 34.5 6.5 55 6-62 295-353 (406)
70 cd03800 GT1_Sucrose_synthase T 61.5 22 0.00048 32.9 6.2 52 6-61 299-350 (398)
71 cd03798 GT1_wlbH_like This fam 60.4 27 0.00058 30.9 6.3 94 164-279 201-294 (377)
72 TIGR03449 mycothiol_MshA UDP-N 60.1 28 0.00062 32.9 6.8 53 6-62 299-351 (405)
73 cd05844 GT1_like_7 Glycosyltra 57.9 29 0.00062 31.9 6.2 94 166-279 189-286 (367)
74 cd03821 GT1_Bme6_like This fam 56.9 13 0.00028 33.2 3.6 55 6-65 278-332 (375)
75 PRK10307 putative glycosyl tra 56.8 26 0.00057 33.4 6.0 90 164-277 228-317 (412)
76 cd03804 GT1_wbaZ_like This fam 56.7 13 0.00028 34.4 3.8 82 166-280 196-277 (351)
77 cd03799 GT1_amsK_like This is 56.5 14 0.0003 33.5 3.8 88 164-271 178-265 (355)
78 TIGR03088 stp2 sugar transfera 56.3 17 0.00037 33.9 4.5 93 164-279 193-288 (374)
79 PHA01633 putative glycosyl tra 55.2 34 0.00073 33.0 6.4 90 163-281 146-241 (335)
80 cd03808 GT1_cap1E_like This fa 55.0 15 0.00033 32.4 3.8 54 6-63 260-313 (359)
81 cd03823 GT1_ExpE7_like This fa 54.7 27 0.00059 31.1 5.4 82 163-269 189-270 (359)
82 cd03804 GT1_wbaZ_like This fam 54.5 14 0.00031 34.1 3.7 52 6-62 258-309 (351)
83 cd03813 GT1_like_3 This family 53.6 23 0.00051 35.0 5.2 45 6-52 367-411 (475)
84 PLN02316 synthase/transferase 53.0 29 0.00064 38.5 6.1 47 4-52 914-960 (1036)
85 PRK15427 colanic acid biosynth 52.4 38 0.00083 32.9 6.4 95 165-279 222-320 (406)
86 cd03811 GT1_WabH_like This fam 51.4 15 0.00032 32.4 3.0 56 6-65 260-315 (353)
87 cd03825 GT1_wcfI_like This fam 50.7 19 0.00041 32.7 3.8 35 243-279 245-280 (365)
88 COG5159 RPN6 26S proteasome re 49.2 8.2 0.00018 37.2 1.1 69 28-118 264-332 (421)
89 cd03799 GT1_amsK_like This is 47.3 22 0.00048 32.1 3.6 61 6-68 252-317 (355)
90 cd03802 GT1_AviGT4_like This f 45.9 21 0.00046 32.1 3.3 59 6-68 240-298 (335)
91 TIGR03088 stp2 sugar transfera 45.0 23 0.00051 33.0 3.5 53 6-62 269-321 (374)
92 cd03818 GT1_ExpC_like This fam 43.2 55 0.0012 31.1 5.8 53 6-62 297-349 (396)
93 cd03793 GT1_Glycogen_synthase_ 43.1 2.1E+02 0.0046 30.0 10.2 32 239-271 445-484 (590)
94 cd03807 GT1_WbnK_like This fam 43.1 25 0.00054 31.2 3.2 51 6-62 265-315 (365)
95 cd03805 GT1_ALG2_like This fam 42.4 32 0.00069 32.1 4.0 59 6-68 296-354 (392)
96 TIGR02149 glgA_Coryne glycogen 41.4 19 0.00041 33.6 2.3 53 6-62 277-329 (388)
97 PRK15484 lipopolysaccharide 1, 40.8 31 0.00068 33.0 3.7 53 6-61 273-325 (380)
98 cd03820 GT1_amsD_like This fam 40.7 73 0.0016 27.9 5.8 91 164-278 177-267 (348)
99 cd04955 GT1_like_6 This family 40.3 51 0.0011 29.9 4.9 82 167-270 195-276 (363)
100 cd03817 GT1_UGDG_like This fam 39.5 27 0.00058 31.2 2.8 55 6-64 275-329 (374)
101 PLN00142 sucrose synthase 39.1 1E+02 0.0023 33.5 7.5 50 9-62 666-715 (815)
102 cd04962 GT1_like_5 This family 38.0 38 0.00082 31.1 3.7 53 6-62 267-319 (371)
103 cd03825 GT1_wcfI_like This fam 37.9 32 0.00069 31.2 3.1 53 6-62 261-313 (365)
104 cd03822 GT1_ecORF704_like This 37.2 1.2E+02 0.0026 27.1 6.8 54 6-62 264-317 (366)
105 cd06226 M14_CPT_like Peptidase 36.3 83 0.0018 29.8 5.7 78 200-279 41-143 (293)
106 PHA01630 putative group 1 glyc 35.7 26 0.00056 33.3 2.2 54 6-63 206-259 (331)
107 cd03814 GT1_like_2 This family 35.7 69 0.0015 28.6 4.9 79 165-270 197-275 (364)
108 KOG4409|consensus 34.9 27 0.00059 34.2 2.2 99 149-262 261-361 (365)
109 TIGR02470 sucr_synth sucrose s 34.7 1.1E+02 0.0023 33.2 6.8 48 10-61 644-691 (784)
110 PLN02275 transferase, transfer 34.7 36 0.00077 32.4 3.0 59 6-68 303-363 (371)
111 PTZ00235 DNA polymerase epsilo 34.5 95 0.0021 29.6 5.7 70 180-250 42-118 (291)
112 cd06246 M14_CPB2 Peptidase M14 33.8 70 0.0015 30.3 4.8 80 199-280 51-152 (300)
113 KOG3111|consensus 33.2 42 0.00092 30.4 3.0 96 62-170 17-128 (224)
114 cd03798 GT1_wlbH_like This fam 32.7 30 0.00064 30.6 2.0 52 6-61 275-326 (377)
115 PLN02871 UDP-sulfoquinovose:DA 32.6 1.2E+02 0.0027 29.6 6.5 55 6-62 328-383 (465)
116 cd03796 GT1_PIG-A_like This fa 32.6 39 0.00084 32.2 2.9 44 6-51 266-309 (398)
117 cd03820 GT1_amsD_like This fam 32.5 1.2E+02 0.0026 26.5 5.8 53 6-62 249-302 (348)
118 TIGR02398 gluc_glyc_Psyn gluco 32.2 3.3E+02 0.0072 27.7 9.6 103 165-271 285-391 (487)
119 cd03802 GT1_AviGT4_like This f 32.0 90 0.0019 28.0 5.1 91 164-279 170-260 (335)
120 cd03859 M14_CPT Peptidase M14- 31.9 91 0.002 29.2 5.2 72 199-271 52-149 (295)
121 PF13692 Glyco_trans_1_4: Glyc 30.8 61 0.0013 25.3 3.4 80 165-274 2-82 (135)
122 TIGR02468 sucrsPsyn_pln sucros 30.6 1.5E+02 0.0031 33.3 7.1 47 11-61 573-619 (1050)
123 PF14459 Prok-E2_C: Prokaryoti 30.3 3.2E+02 0.0068 22.6 7.3 71 185-266 16-92 (131)
124 cd05844 GT1_like_7 Glycosyltra 30.3 59 0.0013 29.8 3.6 55 6-62 261-319 (367)
125 COG3562 KpsS Capsule polysacch 30.2 76 0.0016 31.2 4.3 78 164-253 236-313 (403)
126 TIGR02472 sucr_P_syn_N sucrose 30.1 1.4E+02 0.003 29.1 6.4 48 11-62 342-389 (439)
127 cd03809 GT1_mtfB_like This fam 30.0 1.1E+02 0.0025 27.3 5.4 43 6-50 269-311 (365)
128 PF00246 Peptidase_M14: Zinc c 30.0 1.5E+02 0.0032 27.1 6.2 78 199-279 44-138 (279)
129 cd03871 M14_CPB Peptidase M14 30.0 83 0.0018 29.8 4.6 79 199-279 51-151 (300)
130 cd06238 Peptidase_M14-like_1_1 29.6 40 0.00086 31.6 2.3 80 171-257 21-105 (271)
131 PRK14501 putative bifunctional 28.9 2.8E+02 0.0062 29.3 8.8 103 164-271 264-371 (726)
132 cd03870 M14_CPA Peptidase M14 28.3 1.1E+02 0.0024 29.0 5.1 79 200-280 52-152 (301)
133 PLN03063 alpha,alpha-trehalose 27.8 2.7E+02 0.0059 30.1 8.5 101 167-271 281-385 (797)
134 PF05159 Capsule_synth: Capsul 27.7 12 0.00027 34.0 -1.4 60 203-276 156-215 (269)
135 TIGR02468 sucrsPsyn_pln sucros 27.3 1.8E+02 0.0039 32.7 7.1 103 162-277 476-585 (1050)
136 TIGR02918 accessory Sec system 26.0 60 0.0013 32.8 3.1 54 6-63 389-443 (500)
137 cd03816 GT1_ALG1_like This fam 25.9 2E+02 0.0042 27.9 6.5 80 167-266 234-319 (415)
138 cd03794 GT1_wbuB_like This fam 25.4 84 0.0018 28.0 3.6 55 6-62 291-348 (394)
139 PRK15179 Vi polysaccharide bio 24.7 73 0.0016 33.9 3.5 54 6-63 588-641 (694)
140 cd03812 GT1_CapH_like This fam 24.5 70 0.0015 29.0 3.0 45 6-52 263-307 (358)
141 PRK15490 Vi polysaccharide bio 24.0 1.2E+02 0.0026 31.7 4.7 94 160-277 393-486 (578)
142 cd03816 GT1_ALG1_like This fam 22.6 82 0.0018 30.5 3.2 61 6-69 311-372 (415)
143 PRK15179 Vi polysaccharide bio 22.5 1.7E+02 0.0036 31.2 5.6 88 165-277 517-605 (694)
144 cd04951 GT1_WbdM_like This fam 22.3 1.3E+02 0.0029 27.1 4.3 90 164-277 187-276 (360)
145 cd04946 GT1_AmsK_like This fam 21.5 1.2E+02 0.0025 29.4 4.0 44 18-63 317-360 (407)
146 cd06248 M14_CPA_CPB_like Pepti 21.0 2.1E+02 0.0045 27.1 5.5 79 200-280 53-153 (304)
147 PF11288 DUF3089: Protein of u 20.7 1.4E+02 0.0031 26.9 4.1 44 203-254 95-138 (207)
148 PF07367 FB_lectin: Fungal fru 20.6 30 0.00066 29.4 -0.2 9 273-281 45-53 (140)
149 PRK10125 putative glycosyl tra 20.6 75 0.0016 31.0 2.5 54 6-64 303-356 (405)
150 COG3877 Uncharacterized protei 20.2 76 0.0016 26.0 2.0 32 71-102 82-113 (122)
No 1
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=2.3e-57 Score=465.63 Aligned_cols=219 Identities=41% Similarity=0.534 Sum_probs=183.2
Q ss_pred eehhhhhhcCccEEEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhc-CCC
Q psy17284 46 NVEMAEEMGNDNIFIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITN-GFF 100 (286)
Q Consensus 46 nvEi~e~vg~eN~fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~-G~f 100 (286)
-|.|+..+ .+.++++++|++||++ |++||+|.. +||+|++.++..++ +|.
T Consensus 407 ~v~Ma~LA-----i~~S~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~ 481 (797)
T cd04300 407 QVRMAHLA-----IVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWV 481 (797)
T ss_pred EEehHHHH-----HhcCcchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhh
Confidence 47777776 7889999999999974 899999986 89999999998877 544
Q ss_pred CCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHHHHhcCCcchhHHHHHhhccCCCCCCCCcccccccCCCCcccc
Q psy17284 101 SPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVESSFPETGQ 180 (286)
Q Consensus 101 ~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~ 180 (286)
.+++..+.|-. + ..|.-++ .+-|..+..... ++.+|+++.+|+.++|++|||+|||||||||||
T Consensus 482 --~d~~~l~~l~~-~-~~D~~f~-----~~l~~~K~~nK~-------~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq 545 (797)
T cd04300 482 --TDLDQLKKLEP-F-ADDPAFL-----KEFRAIKQANKE-------RLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQ 545 (797)
T ss_pred --hChHHHHHHHh-c-CCCHHHH-----HHHHHHHHHHHH-------HHHHHHHHHhCCccCCCccEEEEeeechhhhhh
Confidence 45655544422 1 1111111 222333322211 167999999999999999999999999999999
Q ss_pred chhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhh
Q psy17284 181 KFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258 (286)
Q Consensus 181 ~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l 258 (286)
+||+||++.+|.+.+.+ ...+|+||||||||||+|..||+|||+|++++++|||||+++++|||||||||+|++|++|
T Consensus 546 ~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~i 625 (797)
T cd04300 546 LLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKI 625 (797)
T ss_pred hhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHh
Confidence 99999999999887653 3458999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCccCcccccccC
Q psy17284 259 IPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 259 ~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+||||||+|||++|+||||||||||||
T Consensus 626 ipaaDvseqis~ag~EASGTsnMK~~l 652 (797)
T cd04300 626 IPAADLSEQISTAGKEASGTGNMKFML 652 (797)
T ss_pred hhhhhhhhhCCCCCccccCCchhhHHh
Confidence 999999999999999999999999998
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=3.2e-57 Score=463.24 Aligned_cols=217 Identities=41% Similarity=0.541 Sum_probs=182.6
Q ss_pred eehhhhhhcCccEEEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhc-CCC
Q psy17284 46 NVEMAEEMGNDNIFIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITN-GFF 100 (286)
Q Consensus 46 nvEi~e~vg~eN~fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~-G~f 100 (286)
.|.|+..+ .+.++++++|++||++ |++||+|.. +||+|+++++..++ +|.
T Consensus 404 ~v~Ma~LA-----i~~S~~vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~ 478 (794)
T TIGR02093 404 RVRMANLA-----IVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWL 478 (794)
T ss_pred EEehHHHH-----HHhhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhh
Confidence 57777776 7889999999999974 899999986 89999999998876 544
Q ss_pred CCCChhhHHHHHHHHhcC--CCCeeeccCCchHHHHHHHHHHhcCCcchhHHHHHhhccCCCCCCCCcccccccCCCCcc
Q psy17284 101 SPENPDEFKDLSDILLKW--DRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVESSFPET 178 (286)
Q Consensus 101 ~~~d~~~f~~Lyd~L~~~--D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~eY~~~~tG~~~~~~~~~~~~~rR~~~YK 178 (286)
.|++..+ .|... |+-+. .+-|.-+..+ +. ++.+|+++.+|+.++|++|||+|||||||||
T Consensus 479 --~d~~~l~----~l~~~~~D~~f~-----~~l~~vK~~n--K~-----~L~~~i~~~~g~~ldp~slfdvq~KR~heYK 540 (794)
T TIGR02093 479 --TDLDLLK----KLEPYADDSEFL-----EEFRQVKQAN--KQ-----RLAAYIKEHTGVEVDPNSIFDVQVKRLHEYK 540 (794)
T ss_pred --hcHHHHH----HHHhcCCcHHHH-----HHHHHHHHHH--HH-----HHHHHHHHhcCCccCccccchhhheechhhh
Confidence 3555433 33321 11111 2233333322 11 1679999999999999999999999999999
Q ss_pred ccchhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhh
Q psy17284 179 GQKFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAE 256 (286)
Q Consensus 179 R~~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~ 256 (286)
||+||+||++.+|.+.+.+ ...+|+||||||||||+|..||+|||+|+++|++||+||+++++|||||||||+|++|+
T Consensus 541 Rq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe 620 (794)
T TIGR02093 541 RQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAE 620 (794)
T ss_pred HHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCCChHHHH
Confidence 9999999999999877654 23479999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCCCccCcccccccC
Q psy17284 257 LIIPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 257 ~l~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+|+||||||+|||++|+||||||||||||
T Consensus 621 ~iipaaDvseqistag~EASGTsnMK~al 649 (794)
T TIGR02093 621 LIIPAADLSEQISTAGKEASGTGNMKFML 649 (794)
T ss_pred HhhhhhhhhhhCCCCCccccCcchhHHHh
Confidence 99999999999999999999999999998
No 3
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=1.3e-56 Score=458.40 Aligned_cols=214 Identities=37% Similarity=0.517 Sum_probs=179.4
Q ss_pred eehhhhhhcCccEEEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhc-CCC
Q psy17284 46 NVEMAEEMGNDNIFIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITN-GFF 100 (286)
Q Consensus 46 nvEi~e~vg~eN~fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~-G~f 100 (286)
.|.|+..+ .+.++++++|+++|++ |++||+|.. +||+|+++++..++ +|.
T Consensus 406 ~v~Ma~LA-----i~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~~W~ 480 (798)
T PRK14985 406 QVRMANLC-----VVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWA 480 (798)
T ss_pred eeehHHHH-----HHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCcchh
Confidence 35555554 6778888888888865 899999975 89999999998876 444
Q ss_pred CCCChhhHHHHHHHHhcCCCCeeeccCC-ch----HHHHHHHHHHhcCCcchhHHHHHhhccCCCCCCCCcccccccCCC
Q psy17284 101 SPENPDEFKDLSDILLKWDRPGAIPLKG-PV----PTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVESSF 175 (286)
Q Consensus 101 ~~~d~~~f~~Lyd~L~~~D~ylvlaY~d-~~----~W~k~~i~IA~~g~FSSDi~eY~~~~tG~~~~~~~~~~~~~rR~~ 175 (286)
.+++..+.| .. |.+ ++ -|.-+..+ +. ++.+|+++.+|..++|++|||+||||||
T Consensus 481 --~d~~~l~~l----~~--------~~~D~~f~~~~~~vK~~n--K~-----~L~~~i~~~~g~~ldp~slfdvq~kR~h 539 (798)
T PRK14985 481 --NDLDQLINL----EK--------YADDAAFRQQYREIKQAN--KV-----RLAEFVKQRTGIEINPQAIFDVQIKRLH 539 (798)
T ss_pred --hChHHHHHh----hc--------cCCcHHHHHHHHHHHHHH--HH-----HHHHHHHHHhCCccCchhcchhhHhhhh
Confidence 345444333 22 222 22 14433333 11 1779999999999999999999999999
Q ss_pred CccccchhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChh
Q psy17284 176 PETGQKFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVT 253 (286)
Q Consensus 176 ~YKR~~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~ 253 (286)
|||||+||+||++.+|.+.+.+ ...+|+||||||||||+|..||+|||+|++++++||+||+++++|||||||||+|+
T Consensus 540 eYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~Vs 619 (798)
T PRK14985 540 EYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVS 619 (798)
T ss_pred hhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCCChH
Confidence 9999999999999999877653 23589999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccCCCCCCCccCcccccccC
Q psy17284 254 LAELIIPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 254 ~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+|++|+||||||+|||++|+||||||||||||
T Consensus 620 lAe~lipaaDvseqis~ag~EASGTsnMK~am 651 (798)
T PRK14985 620 AAELLIPAADISEQISTAGKEASGTGNMKLAL 651 (798)
T ss_pred HHHHHhhhhhhhhhCCCCCccccCcchhHHHh
Confidence 99999999999999999999999999999998
No 4
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=2.8e-56 Score=457.32 Aligned_cols=219 Identities=37% Similarity=0.475 Sum_probs=181.7
Q ss_pred eehhhhhhcCccEEEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhc-CCC
Q psy17284 46 NVEMAEEMGNDNIFIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITN-GFF 100 (286)
Q Consensus 46 nvEi~e~vg~eN~fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~-G~f 100 (286)
-|.|+..+ .+.++++++|+++|++ |++||+|.. +||+|+++++..++ +|.
T Consensus 420 ~v~Ma~LA-----l~~S~~vNGVS~lH~evl~~~~f~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~ 494 (815)
T PRK14986 420 RVRMAWLA-----VVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWR 494 (815)
T ss_pred EEeeHHHH-----hhccchhhHHHHHHHHHHHHHHHHHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhh
Confidence 46666655 7788999999998864 899999986 89999999998876 544
Q ss_pred CCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHHHHhcCCcchhHHHHHhhccCCCCCCCCcccccccCCCCcccc
Q psy17284 101 SPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVESSFPETGQ 180 (286)
Q Consensus 101 ~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~ 180 (286)
.+++..+.|- .+. .|+-+. .+-|..+... +. ++.+|+++.+|..++|++|||+|||||||||||
T Consensus 495 --~d~~~l~~l~-~~~-~d~~f~-----~~l~~vk~~n--K~-----~L~~~i~~~~g~~ldp~sLfd~qakR~heYKRq 558 (815)
T PRK14986 495 --TDLSQLSELK-QHC-DYPMVN-----HAVRQAKLEN--KK-----RLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQ 558 (815)
T ss_pred --hChHHHHHHH-hhc-cCHHHH-----HHHHHHHHHH--HH-----HHHHHHHHHhCCccCcccceeeeehhhhhhhhh
Confidence 3555544442 111 111111 2234444333 11 177899999999999999999999999999999
Q ss_pred chhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhh
Q psy17284 181 KFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258 (286)
Q Consensus 181 ~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l 258 (286)
+||+|+++.++.+.+.+ ...+|+||||||||||+|..||+|||+|++++++|||||+++++|||||||||+|++|++|
T Consensus 559 ~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~l 638 (815)
T PRK14986 559 LMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLI 638 (815)
T ss_pred hHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHh
Confidence 99999999999877543 2348999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCccCcccccccC
Q psy17284 259 IPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 259 ~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+||||||+|||++|+||||||||||||
T Consensus 639 ipg~Dv~eqis~ag~EASGTsnMK~al 665 (815)
T PRK14986 639 IPAADLSEQISLAGTEASGTSNMKFAL 665 (815)
T ss_pred hhhhhhhhhCCCCCccccCcchhhHHh
Confidence 999999999999999999999999998
No 5
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.7e-56 Score=453.88 Aligned_cols=192 Identities=32% Similarity=0.427 Sum_probs=143.8
Q ss_pred CCCCCcccc-CChhHHHHHHHHhc-CCCCCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHH---HHhcCCcchhH
Q psy17284 75 GYDAPSYYN-ANPELKLVVDQITN-GFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLR---WASSGRWPVTF 149 (286)
Q Consensus 75 gy~p~~~~~-~np~L~~vlD~i~~-G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~---IA~~g~FSSDi 149 (286)
|+|+|+|.. +||+|.++++..++ +|. .|++..+.| .. |.+...|.+.... ..+. .+
T Consensus 368 GVh~rrWl~~~nP~L~~L~~~~iG~~W~--~d~~~l~~l----~~--------~~dd~~~~~~~~~vK~~~K~-----rl 428 (713)
T PF00343_consen 368 GVHPRRWLSQANPELSELITEYIGDDWR--TDLEQLEKL----EK--------FADDEEFQEELREVKQENKE-----RL 428 (713)
T ss_dssp -B-TCCCCCCTSHHHHHHHHHHHTSGGG--CSGGGGGGG----GG--------GCCSHHHHHHHHHHHHHHHH-----HH
T ss_pred CccCcccccccCHHHHHHHHHHhccccc--cCHHHHHHH----HH--------hhCchHHHHHHHHHHHHHHH-----HH
Confidence 899999987 89999999997766 454 355544333 21 3333333222222 1111 17
Q ss_pred HHHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHH
Q psy17284 150 MEHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICS 227 (286)
Q Consensus 150 ~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~ 227 (286)
.+|+++.+|+.|+|++|||+|||||||||||+||+|+++.++.+.+.. ...+||||||||||||+|.+||+|||+|++
T Consensus 429 ~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~ 508 (713)
T PF00343_consen 429 AEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINN 508 (713)
T ss_dssp HHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999876653 467999999999999999999999999999
Q ss_pred HHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccccccC
Q psy17284 228 VARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 228 ~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+|++||+||+++++|||||||||||++|++|+||||||+|||++|+||||||||||||
T Consensus 509 va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~ 566 (713)
T PF00343_consen 509 VAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAM 566 (713)
T ss_dssp HHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHH
T ss_pred HHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhc
Confidence 9999999999999999999999999999999999999999999999999999999997
No 6
>KOG2099|consensus
Probab=100.00 E-value=8.6e-55 Score=425.59 Aligned_cols=161 Identities=58% Similarity=0.851 Sum_probs=156.7
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+||||+|+||||||||+||||||||||||||||||||||||||||+|++|+||+||||+++|+|++|+++||+...+
T Consensus 654 ~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm~eE~GeeN~FiFG~~~e~V~~L~k~gy~a~~~ 733 (843)
T KOG2099|consen 654 LAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEAGEENFFIFGMRVEDVEALRKKGYNAQEY 733 (843)
T ss_pred hhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHHHHHcCcccEEEecccHHHHHHHHhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcCCCCeeec---------------cCCchHHHHHHHH-HHhcCCc
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRPGAIP---------------LKGPVPTTQLVLR-WASSGRW 145 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~F 145 (286)
|+.+|+|++|+++|.+|+|+|.+|+.|+++.+.|..+|+|++.+ |+|+++|.+|++. ||.+|+|
T Consensus 734 ~~~~P~l~~v~~~i~sG~Fsp~~pd~fkd~~~~l~~hD~f~V~~Df~sYi~~q~kVd~~y~nqk~W~~msi~niA~sgkF 813 (843)
T KOG2099|consen 734 YDPLPELKQVIDQIESGFFSPKNPDEFKDIVNMLMYHDYFLVFADFEAYIKCQEKVDQLYRNQKEWLKMSILNIAGSGKF 813 (843)
T ss_pred CCCCchHHHHHHHHhcCccCCCCchHHHHHHHhhhccceEEeeCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999987 9999999999999 9999999
Q ss_pred chh--HHHHHhhccCCCCC
Q psy17284 146 PVT--FMEHFRGSSHRDIS 162 (286)
Q Consensus 146 SSD--i~eY~~~~tG~~~~ 162 (286)
||| +.||+++.+|++-.
T Consensus 814 SSDRtI~eYa~eIWnvep~ 832 (843)
T KOG2099|consen 814 SSDRTIAEYAREIWNVEPS 832 (843)
T ss_pred CccchHHHHHHHhcCCCcc
Confidence 999 99999999975543
No 7
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=1.9e-54 Score=442.85 Aligned_cols=157 Identities=57% Similarity=0.827 Sum_probs=153.3
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+|+|||||||||||||+||||||||||||||||||||||||||||+|+||+||+|+||++++||.+++++||+|+++
T Consensus 618 lAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~Y~~~~~ 697 (794)
T TIGR02093 618 LAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREY 697 (794)
T ss_pred HHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHHHHHHHcCCCchhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhc-CCCCeeec---------------cCCchHHHHHHHH-HHhcCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDRPGAIP---------------LKGPVPTTQLVLR-WASSGR 144 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~-~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~ 144 (286)
|+.||+|++++|+|.+|+|++++++.|++||++|+. +|+|++++ |+|+++|++|++. ||++|+
T Consensus 698 y~~~~~l~~~~d~i~~g~f~~~~~~~f~~l~~~l~~~~D~y~vl~Df~sY~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~ 777 (794)
T TIGR02093 698 YEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNHGDPFFVLADFAAYVDAQERVDALYRDQLEWTKKSILNIANSGK 777 (794)
T ss_pred ccCCHHHHHHHHHHhcCCCCCCCchHHHHHHHHHccCCCeeeeeccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999986 69999998 9999999999999 999999
Q ss_pred cchh--HHHHHhhccC
Q psy17284 145 WPVT--FMEHFRGSSH 158 (286)
Q Consensus 145 FSSD--i~eY~~~~tG 158 (286)
|||| +++|+++.++
T Consensus 778 FSsDRtI~eYa~~IW~ 793 (794)
T TIGR02093 778 FSSDRTIREYAKEIWH 793 (794)
T ss_pred cCCchhHHHHHHHhhC
Confidence 9999 9999999875
No 8
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=7.4e-54 Score=438.17 Aligned_cols=158 Identities=43% Similarity=0.607 Sum_probs=153.9
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+|+|||||||||||||+||||||||||||||||||||||||||||+++||+||+|+||++++||.+++++||+|+++
T Consensus 620 lAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ev~~~~~~~y~~~~~ 699 (798)
T PRK14985 620 AAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLAKGYDPVKW 699 (798)
T ss_pred HHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHHHHHHHHcCCChhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhc-CCCCeeec---------------cCCchHHHHHHHH-HHhcCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDRPGAIP---------------LKGPVPTTQLVLR-WASSGR 144 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~-~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~ 144 (286)
|+.||+|++|+|+|.+|+|++++++.|++||++|+. +|+|++++ |.|+++|++|++. ||++|+
T Consensus 700 y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~vl~Df~sY~~~q~~v~~~y~d~~~W~~~~i~Nia~~G~ 779 (798)
T PRK14985 700 RKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQGGDPYLVLADFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGM 779 (798)
T ss_pred ccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhCCCeeEeeccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999976 69999998 9999999999999 999999
Q ss_pred cchh--HHHHHhhccCC
Q psy17284 145 WPVT--FMEHFRGSSHR 159 (286)
Q Consensus 145 FSSD--i~eY~~~~tG~ 159 (286)
|||| +++|+++.++.
T Consensus 780 FSsDRtI~eYa~~IW~~ 796 (798)
T PRK14985 780 FSSDRSIRDYQARIWQA 796 (798)
T ss_pred cCcHHHHHHHHHHhhCC
Confidence 9999 99999998863
No 9
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=8.2e-54 Score=439.42 Aligned_cols=157 Identities=55% Similarity=0.821 Sum_probs=153.4
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+|||||||||||||||+||||||||||||||||||||||||||||+++||+||+|+||++++||.+++++||+|+++
T Consensus 621 lAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~y~~~~~ 700 (797)
T cd04300 621 LAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADY 700 (797)
T ss_pred HHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHHHHHHHcCCChHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhc-CCCCeeec---------------cCCchHHHHHHHH-HHhcCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDRPGAIP---------------LKGPVPTTQLVLR-WASSGR 144 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~-~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~ 144 (286)
|+.||+|++|+|+|.+|.|++++++.|++||++|+. +|+|++++ |.|+++|++|++. ||++|+
T Consensus 701 y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~ 780 (797)
T cd04300 701 YEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNGNDEYLVLADFESYVDAQEKVDALYRDQEEWARKSILNIARSGK 780 (797)
T ss_pred ccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHccCCCeeEeeccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999987 69999998 9999999999999 999999
Q ss_pred cchh--HHHHHhhccC
Q psy17284 145 WPVT--FMEHFRGSSH 158 (286)
Q Consensus 145 FSSD--i~eY~~~~tG 158 (286)
|||| ++||+++.++
T Consensus 781 FSsDRtI~eYa~~IW~ 796 (797)
T cd04300 781 FSSDRTIREYAEDIWN 796 (797)
T ss_pred cCCcccHHHHHHHhhC
Confidence 9999 9999999875
No 10
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=4.1e-53 Score=434.01 Aligned_cols=158 Identities=51% Similarity=0.740 Sum_probs=154.1
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+|+|||||||||||||+||||||||||||||||||||+|||||||+++||+||+|+||++++||.+++++||+|+++
T Consensus 634 lAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev~~~~~~~Y~~~~~ 713 (815)
T PRK14986 634 LAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPREY 713 (815)
T ss_pred HHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHHHHHHHcCCChhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhc-CCCCeeec---------------cCCchHHHHHHHH-HHhcCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK-WDRPGAIP---------------LKGPVPTTQLVLR-WASSGR 144 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~-~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~ 144 (286)
|+.||+|++++|+|.+|+|++++++.|++||+.|+. +|+|++++ |+|+++|++|++. ||++|+
T Consensus 714 y~~~~~l~~~~d~i~~g~f~~~~~~~f~~i~~~l~~~~D~y~vl~Df~sY~~aq~~v~~~y~d~~~W~~~~i~Nia~~G~ 793 (815)
T PRK14986 714 YEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYRNQEEWTRKAMLNIANMGY 793 (815)
T ss_pred ccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHhccCCCeeEeeccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999899999999999986 69999998 9999999999999 999999
Q ss_pred cchh--HHHHHhhccCC
Q psy17284 145 WPVT--FMEHFRGSSHR 159 (286)
Q Consensus 145 FSSD--i~eY~~~~tG~ 159 (286)
|||| +++|+++.+++
T Consensus 794 FSsDRtI~~Ya~~IW~~ 810 (815)
T PRK14986 794 FSSDRTIKEYADEIWHI 810 (815)
T ss_pred cCCchhHHHHHHHhhCC
Confidence 9999 99999999864
No 11
>KOG2099|consensus
Probab=100.00 E-value=2.2e-53 Score=415.75 Aligned_cols=219 Identities=41% Similarity=0.535 Sum_probs=182.7
Q ss_pred eehhhhhhcCccEEEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhcCCCC
Q psy17284 46 NVEMAEEMGNDNIFIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITNGFFS 101 (286)
Q Consensus 46 nvEi~e~vg~eN~fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~G~f~ 101 (286)
.|.|+..+ .+.+|++++|+++|++ |++||+|+. +||.|.+++..-++..+-
T Consensus 440 ~i~MA~L~-----ivgsHaVNGVa~iHSeilK~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ige~~i 514 (843)
T KOG2099|consen 440 RINMAHLC-----IVGSHAVNGVAEIHSEILKQSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLADLITEKIGEEWI 514 (843)
T ss_pred eeeeeeee-----eecccccccHHHHHHHHHHHHHHHHHHHhChHHhccccCCcCHHHHHHhcCchHHHHHHHHhhhHhh
Confidence 45555443 8889999999999976 899999988 999999999877664332
Q ss_pred CCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHH-HHhcCCcchhHHHHHhhccCCCCCCCCcccccccCCCCcccc
Q psy17284 102 PENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLR-WASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVESSFPETGQ 180 (286)
Q Consensus 102 ~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~-IA~~g~FSSDi~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~ 180 (286)
.|.+.+..|-.-. +|.- =+..|.+-... .-+ +.+|.++.+|++|+|++|||+||||+||||||
T Consensus 515 -~dl~~l~~L~~~a--~d~~------f~~~~a~vK~~NKlk-------~a~~le~e~~v~inp~smFDiqVKRIHEYKRQ 578 (843)
T KOG2099|consen 515 -TDLDQLTKLRKFA--DDEE------FQREWAKVKQENKLK-------LAAYLEKEYGVKINPSSMFDIQVKRIHEYKRQ 578 (843)
T ss_pred -hhHHHHHHHHHhc--ccHH------HHHHHHHHHHhhHHH-------HHHHHHHHhCcccCcchhhhhhHHHHHHHHHH
Confidence 2344433331111 1211 13455554433 111 67899999999999999999999999999999
Q ss_pred chhhHHhhHHHHHHhhc--CCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhh
Q psy17284 181 KFAALITIFLIEERTAK--GKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258 (286)
Q Consensus 181 ~l~~l~~i~~~~~~~~~--~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l 258 (286)
+|||||+|++|.+.+++ ...+||++||||||+|+|++||.|||+|+.++.++||||.+.++|||||||||+|++|+++
T Consensus 579 llN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~i 658 (843)
T KOG2099|consen 579 LLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAVADVVNNDPEVGDRLKVIFLENYRVSLAEKI 658 (843)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHHHHHhcCChhhhheeEEEEecCcccchhhhc
Confidence 99999999999987654 3458999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCccCcccccccC
Q psy17284 259 IPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 259 ~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
+||+|+++|||++|+||||||||||+|
T Consensus 659 IPasdLSe~ISTAGtEASGT~NMKF~l 685 (843)
T KOG2099|consen 659 IPASDLSEQISTAGTEASGTGNMKFML 685 (843)
T ss_pred cchHHHHHHhhhccccccCCCcceEEe
Confidence 999999999999999999999999997
No 12
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.1e-51 Score=418.92 Aligned_cols=158 Identities=44% Similarity=0.685 Sum_probs=143.4
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+||+|+||||||+||||+|+||||||||||||||+|||||+|||||||.++||+||+|+||++++||.+++++||+|+++
T Consensus 535 lA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev~~~~~~gY~~~~~ 614 (713)
T PF00343_consen 535 LAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEVEELRKNGYNPREY 614 (713)
T ss_dssp HHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT-HHHHH
T ss_pred HHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHHHHHHhcCCCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHH-hcCCCCeeec---------------cCCchHHHHHHHH-HHhcCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDIL-LKWDRPGAIP---------------LKGPVPTTQLVLR-WASSGR 144 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L-~~~D~ylvla---------------Y~d~~~W~k~~i~-IA~~g~ 144 (286)
|+.||+|++|+|+|.+|.|++++++.|++||+++ ..+|+|++++ |.|+++|++|++. ||++|+
T Consensus 615 y~~~~~l~~vld~i~~g~f~~~~~~~f~~i~~~~~~~~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W~~~~i~Nia~~g~ 694 (713)
T PF00343_consen 615 YENDPELKRVLDQIISGFFSPGDPDEFKPIYDSLLMYNDEYLVLADFESYVEAQEKVDKAYRDPKKWNKMSILNIARSGK 694 (713)
T ss_dssp HHHSHHHHHHHHHHHHTTTTTTSTTTTHHHHHHCHHHTTTT-HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCGGG
T ss_pred cccCHHHHHHHHHHhcCCCCCCCchhHHHHHhCcCCCCCcchhhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998999999999994 5679999998 9999999999999 999999
Q ss_pred cchh--HHHHHhhccCC
Q psy17284 145 WPVT--FMEHFRGSSHR 159 (286)
Q Consensus 145 FSSD--i~eY~~~~tG~ 159 (286)
|||| +++|+++.+++
T Consensus 695 FssDrtI~~Ya~~IW~~ 711 (713)
T PF00343_consen 695 FSSDRTIREYAEDIWNV 711 (713)
T ss_dssp GBHHHHHHHHHHHTTTS
T ss_pred CCchHHHHHHHHHhhCC
Confidence 9999 99999998864
No 13
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-51 Score=413.14 Aligned_cols=203 Identities=35% Similarity=0.420 Sum_probs=160.1
Q ss_pred EEecCCHHHHHHHHHc-----------------------CCCCCcccc-CChhHHHHHHHHhcCCCCCCChhhHHHHHHH
Q psy17284 59 FIFGMTVDQVEELKKK-----------------------GYDAPSYYN-ANPELKLVVDQITNGFFSPENPDEFKDLSDI 114 (286)
Q Consensus 59 fiFG~~~~eV~~l~~~-----------------------gy~p~~~~~-~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~ 114 (286)
+..+++++.|++||.+ |++||+|.. +||+|...++.-++..+. .+.+. .+.
T Consensus 372 l~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~~ig~~W~-~~~~~----l~~ 446 (750)
T COG0058 372 LVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIGDEWL-NDLDI----LDE 446 (750)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCCcCCchhhhhhhHHHHHHHhhhhhhhhh-hhhhh----hhH
Confidence 7778889999999976 899999987 889998888865543221 12222 122
Q ss_pred HhcCCCCeeeccCCchHHHHHHHHHHhcCCcchh--HHHHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHH
Q psy17284 115 LLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVT--FMEHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIE 192 (286)
Q Consensus 115 L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSD--i~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~ 192 (286)
|+. |.+.+.-.++...+ ++... +.+|.++.+|..++|++|||+|||||||||||+||+++++.++.
T Consensus 447 l~~--------~a~~~~~~e~i~~i----K~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~ 514 (750)
T COG0058 447 LLW--------FADDKAFRELIAEI----KRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYR 514 (750)
T ss_pred HHH--------hhhhHHHHHHHHHH----HHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHHHHHH
Confidence 221 11111111111110 00001 66888889999999999999999999999999999999998887
Q ss_pred HHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCC
Q psy17284 193 ERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAG 272 (286)
Q Consensus 193 ~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~ 272 (286)
..++ +..+|+||||||||||+|+.||+|||+|+++|+++|| ++||||||||||++|++|+||||||+|||++|
T Consensus 515 ~i~~-d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~------~lkVvFl~nYdvslA~~iipa~Dvweqis~a~ 587 (750)
T COG0058 515 ILKE-DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPTAG 587 (750)
T ss_pred HHhc-CCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcc------cceEEEeCCCChhHHHhhcccccccccCCCCC
Confidence 6543 4556777799999999999999999999999999987 78999999999999999999999999999999
Q ss_pred CCccCcccccccC
Q psy17284 273 TEASGTGNMKFMI 285 (286)
Q Consensus 273 ~EAsGTs~MK~~~ 285 (286)
+||||||||||||
T Consensus 588 ~EASGTsnMK~al 600 (750)
T COG0058 588 KEASGTSNMKAAL 600 (750)
T ss_pred ccccCcCcchHHh
Confidence 9999999999998
No 14
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=380.45 Aligned_cols=157 Identities=48% Similarity=0.645 Sum_probs=150.3
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCC-c
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAP-S 80 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~-~ 80 (286)
+||+|||||||||||||||+||||||||||||||+|||||||||||||+|+||++|+|+||++++||.+++++||.|+ .
T Consensus 569 lA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v~~~~~~~~~~~~~ 648 (750)
T COG0058 569 LAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNAL 648 (750)
T ss_pred HHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhHHHHHhcccccHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998888 7
Q ss_pred cccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhc--C-CCCeeec---------------cCCchHHHHHHHH-HHh
Q psy17284 81 YYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK--W-DRPGAIP---------------LKGPVPTTQLVLR-WAS 141 (286)
Q Consensus 81 ~~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~--~-D~ylvla---------------Y~d~~~W~k~~i~-IA~ 141 (286)
||+.+++++.+++++++|.|+|++.+.|++++++|.. + |+|++++ |++++.|.++++. +|.
T Consensus 649 y~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~sl~~~~~~dr~~~~yd~~~Y~~aq~~~~~~~~~~~~W~~~~i~nia~ 728 (750)
T COG0058 649 YYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDALYRDQEAWTKKAILNIAN 728 (750)
T ss_pred HHHHhHHHHHHHHHHhcccCCcccHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 8889999999999999999999999999999999985 3 8888887 9999999999999 999
Q ss_pred cCCcchh--HHHHHhhccC
Q psy17284 142 SGRWPVT--FMEHFRGSSH 158 (286)
Q Consensus 142 ~g~FSSD--i~eY~~~~tG 158 (286)
+|+|||| +++|+.+.++
T Consensus 729 ~g~fssDrtI~~Y~~~Iw~ 747 (750)
T COG0058 729 SGLFSSDRTIREYAGEIWH 747 (750)
T ss_pred cCCCCchhHHHHHHHHhhc
Confidence 9999999 9999998775
No 15
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.6e-41 Score=350.38 Aligned_cols=182 Identities=20% Similarity=0.288 Sum_probs=142.7
Q ss_pred HcCCCCCccccCChhHHHHHHHHhc-CCCCCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHHHHhcCCcchhHHH
Q psy17284 73 KKGYDAPSYYNANPELKLVVDQITN-GFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFME 151 (286)
Q Consensus 73 ~~gy~p~~~~~~np~L~~vlD~i~~-G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~e 151 (286)
++|++++.|. +|++.+.++...+ +|.. +.++ ..+...+. . ..|.+.|..+.....+ +.+
T Consensus 388 TNGVh~~~W~--~P~~~~l~~~~~g~~w~~--~~~~-~~~~~~~~-~-------i~d~~lw~~K~~~K~~-------L~~ 447 (778)
T cd04299 388 TNGVHVPTWV--APEMRELYDRYLGGDWRE--RPTD-PELWEAVD-D-------IPDEELWEVRQQLRRR-------LIE 447 (778)
T ss_pred eCCcchhhhc--CHHHHHHHHHhcCcchhh--ccch-HHHHhhhc-C-------CCcHHHHHHHHHHHHH-------HHH
Confidence 5688888885 7999998876544 3432 1111 11111111 1 3456778766655111 334
Q ss_pred HHhhc-----------------cCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhh---cCCccceEEEEeecC
Q psy17284 152 HFRGS-----------------SHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTA---KGKWHTRTIMIGGKA 211 (286)
Q Consensus 152 Y~~~~-----------------tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~---~~~~~p~~~i~~GKa 211 (286)
++++. .+..++|++||++||||||+|||++| |+++++|+. +++.+|+||||||||
T Consensus 448 ~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~L-----il~dl~rl~~il~~~~~pvQ~IfaGKA 522 (778)
T cd04299 448 FVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATL-----LLRDPERLKRLLNDPERPVQFIFAGKA 522 (778)
T ss_pred HHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHH-----HHHHHHHHHHHhhCCCCCeEEEEEEec
Confidence 44332 36779999999999999999999998 666666653 355689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccccccC
Q psy17284 212 APGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 212 ~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
||+|+.||++||+|+++++ ||++.+ ||||+|||||++|++|++|||||||||++|+||||||||||+|
T Consensus 523 hP~d~~gK~iIk~i~~~a~----~p~~~~--kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~ 590 (778)
T cd04299 523 HPADEPGKELIQEIVEFSR----RPEFRG--RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAAL 590 (778)
T ss_pred CccchHHHHHHHHHHHHHh----CcCCCC--cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHH
Confidence 9999999999999999998 999999 9999999999999999999999999999999999999999987
No 16
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=2.1e-37 Score=313.62 Aligned_cols=186 Identities=19% Similarity=0.262 Sum_probs=141.7
Q ss_pred HcCCCCCccccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHHHHhcCCcchhHHHH
Q psy17284 73 KKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEH 152 (286)
Q Consensus 73 ~~gy~p~~~~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~eY 152 (286)
.+|++++.|. +|.++.+.+......+. .+.++.+.+ ..+ |. ..+.+-|..+... +.- +.+|
T Consensus 299 tNGId~~~W~--~~~~~~l~~~y~~~~w~-~~~~~~~~~-~~~---~~-----~~~~~l~~~K~~~--K~~-----L~~~ 359 (601)
T TIGR02094 299 TNGVHNPTWV--APELRDLYERYLGENWR-ELLADEELW-EAI---DD-----IPDEELWEVHLKL--KAR-----LIDY 359 (601)
T ss_pred eCCccccccC--CHHHHHHHHHhCCcchh-ccchhhhhh-hhc---cc-----ccHHHHHHHHHHH--HHH-----HHHH
Confidence 4588888884 77887777765442221 233332211 111 11 2344456555444 111 6677
Q ss_pred HhhccCCC-----------------CCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCC
Q psy17284 153 FRGSSHRD-----------------ISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGY 215 (286)
Q Consensus 153 ~~~~tG~~-----------------~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d 215 (286)
+++.+|.. ++|++++++||||||+||||+| +|+++.++.+.+ +++..|+||||+|||||+|
T Consensus 360 v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dL-il~~i~~l~~i~-~~~~~pvq~V~~Gka~p~d 437 (601)
T TIGR02094 360 IRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLARIL-NNPERPVQIVFAGKAHPAD 437 (601)
T ss_pred HHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHH-HHHHHHHHHHHh-hCCCCCeEEEEEEecCccc
Confidence 77766655 9999999999999999999998 555554444332 3455899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccccccC
Q psy17284 216 YTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285 (286)
Q Consensus 216 ~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~~ 285 (286)
..||++|++|+++++ +|++.+ ||+|++|||+++|++|++|||||||||++|+||||||+|||++
T Consensus 438 ~~gk~~i~~i~~la~----~~~~~~--kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~ 501 (601)
T TIGR02094 438 GEGKEIIQRIVEFSK----RPEFRG--RIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAM 501 (601)
T ss_pred chHHHHHHHHHHHHh----cccCCC--CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHH
Confidence 999999999999999 899998 9999999999999999999999999999999999999999986
No 17
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.91 E-value=2.9e-25 Score=230.01 Aligned_cols=121 Identities=25% Similarity=0.278 Sum_probs=101.3
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+|++|+||||||+|+|++|+|||||||||+||||+|++||+||||.|.++ ..|.|.||.... |.
T Consensus 559 lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~---g~nGwaig~~~~---------~~---- 622 (778)
T cd04299 559 LARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD---GENGWAIGDGDE---------YE---- 622 (778)
T ss_pred HHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC---CCCceEeCCCcc---------cc----
Confidence 68999999999999999999999999999999999999999999999984 589999998642 11
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcCCCCeeeccCC-----chHHHHHHHH-HHhcC-Ccchh--HHHH
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKG-----PVPTTQLVLR-WASSG-RWPVT--FMEH 152 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d-----~~~W~k~~i~-IA~~g-~FSSD--i~eY 152 (286)
+++. .|..+.++||+.|+.. ..+++|.. +++|.+|+.+ |+..+ .||++ +++|
T Consensus 623 ---~~~~--------------~d~~da~~Ly~~Le~~--i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY 683 (778)
T cd04299 623 ---DDEY--------------QDAEEAEALYDLLENE--VIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREY 683 (778)
T ss_pred ---Chhh--------------cchhhHHHHHHHHHHH--HHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 2111 2456678999999754 44466764 8899999999 87655 99999 9999
Q ss_pred Hhhcc
Q psy17284 153 FRGSS 157 (286)
Q Consensus 153 ~~~~t 157 (286)
+++.|
T Consensus 684 ~~~~Y 688 (778)
T cd04299 684 VERFY 688 (778)
T ss_pred HHHhH
Confidence 99977
No 18
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.86 E-value=1.1e-22 Score=206.53 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=95.4
Q ss_pred cccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 2 ~ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+|++|+||||||+|||++|+||||||+|||||||+|++||+||||+|..+ ..|.|.||......
T Consensus 470 lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~---~~nGf~f~~~~~~~------------- 533 (601)
T TIGR02094 470 LARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD---GDNGWAIGDGEEYD------------- 533 (601)
T ss_pred HHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC---CCcEEEECCCcccc-------------
Confidence 68999999999999999999999999999999999999999999999874 57999999754211
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcCCCCeeeccCC-----chHHHHHHHH-HHhcC-Ccchh--HHHH
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKG-----PVPTTQLVLR-WASSG-RWPVT--FMEH 152 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d-----~~~W~k~~i~-IA~~g-~FSSD--i~eY 152 (286)
+++ ..|..+.++||+.|+.. ...++|.+ ++.|.+++.+ |+..+ .||.+ +++|
T Consensus 534 ---~~~--------------~~d~~da~~l~~~L~~a--i~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y 594 (601)
T TIGR02094 534 ---DEE--------------EQDRLDAEALYDLLENE--VIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREY 594 (601)
T ss_pred ---ccc--------------cccCCCHHHHHHHHHHH--HHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 110 02344556778877532 11334554 6679999999 77654 99999 9999
Q ss_pred Hhhcc
Q psy17284 153 FRGSS 157 (286)
Q Consensus 153 ~~~~t 157 (286)
++.+|
T Consensus 595 ~~~yy 599 (601)
T TIGR02094 595 VDKFY 599 (601)
T ss_pred HHHhC
Confidence 99876
No 19
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.12 E-value=4.9e-06 Score=81.40 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=82.3
Q ss_pred HHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy17284 151 EHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVAR 230 (286)
Q Consensus 151 eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~ 230 (286)
+..++..|...+++.++.+++-|+.++|+..+ +..-.+++.+ .+.+|++.|+.++ .+.+.+.++++
T Consensus 282 ~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~---~~~~lvi~G~g~~------~~~~~~~~~~~ 347 (476)
T cd03791 282 AALQEELGLPVDPDAPLFGFVGRLTEQKGIDL-----LLEALPELLE---LGGQLVILGSGDP------EYEEALRELAA 347 (476)
T ss_pred HHHHHHcCCCcCCCCCEEEEEeeccccccHHH-----HHHHHHHHHH---cCcEEEEEecCCH------HHHHHHHHHHH
Confidence 33455667666899999999999999999886 5444444432 2389999998754 23345555555
Q ss_pred HHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 231 VVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 231 ~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
...+ +|+|+..|+-.+++.+.++||++++.|+ +|+||.+.|.|+
T Consensus 348 ~~~~--------~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAm 391 (476)
T cd03791 348 RYPG--------RVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCGLTQMYAM 391 (476)
T ss_pred hCCC--------cEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCcHHHHHHh
Confidence 4322 5999999998899999999999999776 799999988765
No 20
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.71 E-value=7.3e-05 Score=73.67 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=80.5
Q ss_pred HHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy17284 151 EHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVAR 230 (286)
Q Consensus 151 eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~ 230 (286)
+..++..|...+++.++.+++-|+.++|+..+ +..-.+++.+ .++++++.|+.+|. .-+.+.++++
T Consensus 277 ~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~---~~~~lvi~G~g~~~------~~~~l~~~~~ 342 (473)
T TIGR02095 277 EALQEELGLPVDDDVPLFGVISRLTQQKGVDL-----LLAALPELLE---LGGQLVVLGTGDPE------LEEALRELAE 342 (473)
T ss_pred HHHHHHcCCCccCCCCEEEEEecCccccChHH-----HHHHHHHHHH---cCcEEEEECCCCHH------HHHHHHHHHH
Confidence 33455667666678999999999999999886 4444444432 23899999987643 2244445555
Q ss_pred HHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 231 VVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 231 ~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
..++ +|+|+..|+-+.+..++++||+++..|+ +|.+|.+-|.|+
T Consensus 343 ~~~~--------~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAm 386 (473)
T TIGR02095 343 RYPG--------NVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQLYAM 386 (473)
T ss_pred HCCC--------cEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHHHHH
Confidence 4322 5899999999999999999999999876 699998877654
No 21
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.52 E-value=0.00018 Score=71.04 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=75.5
Q ss_pred HhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHH
Q psy17284 153 FRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVV 232 (286)
Q Consensus 153 ~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~ 232 (286)
.++..|.. +++.++.+++-|+.++|+..+ +..-.+++.+ .+.++++.|...|. +.+.+.++++.+
T Consensus 271 l~~~~gl~-~~~~~~i~~vGRl~~~KG~~~-----li~a~~~l~~---~~~~lvivG~g~~~------~~~~l~~l~~~~ 335 (466)
T PRK00654 271 LQERFGLP-DDDAPLFAMVSRLTEQKGLDL-----VLEALPELLE---QGGQLVLLGTGDPE------LEEAFRALAARY 335 (466)
T ss_pred HHHHhCCC-CCCCcEEEEeeccccccChHH-----HHHHHHHHHh---cCCEEEEEecCcHH------HHHHHHHHHHHC
Confidence 34455543 347888999999999999986 4443444322 25789998975432 334455555543
Q ss_pred cCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 233 NNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 233 ~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
+ + +|+|+..|+-++++.++++||+++..|+ +|.+|.+-|-|+
T Consensus 336 ~------~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAm 377 (466)
T PRK00654 336 P------G--KVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYAL 377 (466)
T ss_pred C------C--cEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHH
Confidence 2 1 5788888988888999999999999887 799998877664
No 22
>PRK14098 glycogen synthase; Provisional
Probab=97.17 E-value=0.0009 Score=67.04 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=80.4
Q ss_pred HHHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHH
Q psy17284 150 MEHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVA 229 (286)
Q Consensus 150 ~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~ 229 (286)
++..++..|...+++.+..+++-|+.++|...+ +..-..++.+ .+.++|+.|.. +. ..-+.+.+++
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~-----li~a~~~l~~---~~~~lvivG~G---~~---~~~~~l~~l~ 357 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVIINFDDFQGAEL-----LAESLEKLVE---LDIQLVICGSG---DK---EYEKRFQDFA 357 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEeccccccCcHHH-----HHHHHHHHHh---cCcEEEEEeCC---CH---HHHHHHHHHH
Confidence 345555677777889999999999999999886 3333333322 25899999963 22 2334555555
Q ss_pred HHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 230 RVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 230 ~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
+...+ +|.|+..|+-..+..++++||+.+..|+ .|+||.+-|-|+
T Consensus 358 ~~~~~--------~V~~~g~~~~~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAm 402 (489)
T PRK14098 358 EEHPE--------QVSVQTEFTDAFFHLAIAGLDMLLMPGK--IESCGMLQMFAM 402 (489)
T ss_pred HHCCC--------CEEEEEecCHHHHHHHHHhCCEEEeCCC--CCCchHHHHHHH
Confidence 54322 6999999999999999999999998876 799998865543
No 23
>PRK14099 glycogen synthase; Provisional
Probab=96.81 E-value=0.0028 Score=63.51 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=75.1
Q ss_pred HHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy17284 151 EHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVAR 230 (286)
Q Consensus 151 eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~ 230 (286)
+..++..|...+++.+..+++-|+.++|...+ +..-..++.+ .+.++|+.|.. +. .+-+.+.++++
T Consensus 281 ~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~-----Li~A~~~l~~---~~~~lvivG~G---~~---~~~~~l~~l~~ 346 (485)
T PRK14099 281 AALQARFGLDPDPDALLLGVISRLSWQKGLDL-----LLEALPTLLG---EGAQLALLGSG---DA---ELEARFRAAAQ 346 (485)
T ss_pred HHHHHHcCCCcccCCcEEEEEecCCccccHHH-----HHHHHHHHHh---cCcEEEEEecC---CH---HHHHHHHHHHH
Confidence 34455667666788999999999999999875 3333333321 24678888763 22 23334444554
Q ss_pred HHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 231 VVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 231 ~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
... + +++++-.|+-.+++.+..+||+.+..|+ +|.||.+-|-|+
T Consensus 347 ~~~------~--~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~fGl~~lEAm 390 (485)
T PRK14099 347 AYP------G--QIGVVIGYDEALAHLIQAGADALLVPSR--FEPCGLTQLCAL 390 (485)
T ss_pred HCC------C--CEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCCcHHHHHHH
Confidence 322 2 4666667898999999899999999776 799999877654
No 24
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.012 Score=59.41 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=82.2
Q ss_pred HhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHH
Q psy17284 153 FRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVV 232 (286)
Q Consensus 153 ~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~ 232 (286)
+.+..|.+.+.+.+..+.+=|++++|--+| +..-++.+-+.. .|+|+=|++-|..+. .+..+++.+
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl-----~~~~i~~~l~~~---~~~vilG~gd~~le~------~~~~la~~~ 347 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDL-----LLEAIDELLEQG---WQLVLLGTGDPELEE------ALRALASRH 347 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhH-----HHHHHHHHHHhC---ceEEEEecCcHHHHH------HHHHHHHhc
Confidence 444568888899999999999999999886 443333322222 789999999665544 456677765
Q ss_pred cCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 233 NNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 233 ~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
++ ++.....|+..+|+.+..|+|+|+--|+ +|.||-+-|-++
T Consensus 348 ~~--------~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ql~am 389 (487)
T COG0297 348 PG--------RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQLYAM 389 (487)
T ss_pred Cc--------eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHHHHHH
Confidence 44 7999999999999999999999996554 799998876543
No 25
>PLN02316 synthase/transferase
Probab=95.83 E-value=0.016 Score=63.24 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=76.6
Q ss_pred HHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy17284 151 EHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVAR 230 (286)
Q Consensus 151 eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~ 230 (286)
+..++..|.. .++.++.++|=|+++.|...+ |..-..++. ..+.+||+.|-. |.. .+-+.+.++++
T Consensus 827 ~~Lr~~lGL~-~~d~plVg~VGRL~~qKGvdl-----Li~Al~~ll---~~~~qlVIvG~G-pd~----~~e~~l~~La~ 892 (1036)
T PLN02316 827 EALQQRLGLK-QADLPLVGIITRLTHQKGIHL-----IKHAIWRTL---ERNGQVVLLGSA-PDP----RIQNDFVNLAN 892 (1036)
T ss_pred HHHHHHhCCC-cccCeEEEEEeccccccCHHH-----HHHHHHHHh---hcCcEEEEEeCC-CCH----HHHHHHHHHHH
Confidence 3345555654 357889999999999999876 333333321 135788888864 432 22344455555
Q ss_pred HHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 231 VVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 231 ~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
.+.. ...+ +|.|.-.|+-.++..+++|||+.+--|+ .|.||-+-|-|+
T Consensus 893 ~Lg~--~~~~--rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAM 940 (1036)
T PLN02316 893 QLHS--SHHD--RARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAM 940 (1036)
T ss_pred HhCc--cCCC--eEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHH
Confidence 4321 1123 6888888999999999999999998876 799998876654
No 26
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.43 E-value=0.018 Score=56.28 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=40.0
Q ss_pred ccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 5 LIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 5 ~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
.++.+||+...-|. .|.+|.+.|.+|.+|.+.|.|.-|...|+..+
T Consensus 366 ~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~ 411 (476)
T cd03791 366 LIYAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVID 411 (476)
T ss_pred HHHHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeC
Confidence 46789999998776 69999999999999999999999988776644
No 27
>PLN02939 transferase, transferring glycosyl groups
Probab=94.85 E-value=0.062 Score=58.17 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=77.3
Q ss_pred HHHhhccCCCCC-CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHH
Q psy17284 151 EHFRGSSHRDIS-TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVA 229 (286)
Q Consensus 151 eY~~~~tG~~~~-~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~ 229 (286)
...++..|..-+ ++.++.++|-|+++.|...+ +..-..++.. ...+||+.|.. |.. .+.+.+.+++
T Consensus 764 ~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDl-----LleA~~~Ll~---~dvqLVIvGdG-p~~----~~e~eL~~La 830 (977)
T PLN02939 764 AALRKQLGLSSADASQPLVGCITRLVPQKGVHL-----IRHAIYKTAE---LGGQFVLLGSS-PVP----HIQREFEGIA 830 (977)
T ss_pred HHHHHHhCCCcccccceEEEEeecCCcccChHH-----HHHHHHHHhh---cCCEEEEEeCC-CcH----HHHHHHHHHH
Confidence 334556665543 67889999999999999986 3332333221 24688888864 211 2334455666
Q ss_pred HHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCccccccc
Q psy17284 230 RVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFM 284 (286)
Q Consensus 230 ~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~MK~~ 284 (286)
+.+.. .+ +|.|+-.|+=.++..+++|||+.+..|+ +|.||-+-|-|+
T Consensus 831 ~~l~l----~d--rV~FlG~~de~lah~IYAaADIFLmPSr--~EPfGLvqLEAM 877 (977)
T PLN02939 831 DQFQS----NN--NIRLILKYDEALSHSIYAASDMFIIPSM--FEPCGLTQMIAM 877 (977)
T ss_pred HHcCC----CC--eEEEEeccCHHHHHHHHHhCCEEEECCC--ccCCcHHHHHHH
Confidence 65432 22 6999999998889999999999999887 699997766543
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=93.59 E-value=0.31 Score=45.79 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=68.7
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCC--ccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGK--WHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD 240 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~--~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~ 240 (286)
++..+.+.+-|+.+.|++.+ +..-.+++.+.. ..+..+++.|...+.........+.+.++++.. ..+.+
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~-----ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~---~~l~~ 280 (392)
T cd03805 209 SGKKTFLSINRFERKKNIAL-----AIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEEL---LLLED 280 (392)
T ss_pred CCceEEEEEeeecccCChHH-----HHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHh---cCCCc
Confidence 34556677888888999875 333334433211 136788999988776666656666666666641 12333
Q ss_pred ceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 241 KLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 241 ~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+....-.....++.++|+.+..|. .|..|.+
T Consensus 281 --~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~ 315 (392)
T cd03805 281 --QVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIV 315 (392)
T ss_pred --eEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCch
Confidence 6999988776666778899999998765 4655553
No 29
>PRK00654 glgA glycogen synthase; Provisional
Probab=91.79 E-value=0.3 Score=48.29 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=38.6
Q ss_pred ccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhh
Q psy17284 5 LIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAE 51 (286)
Q Consensus 5 ~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e 51 (286)
.++.+||+...-|. .|.+|.+-|-+|..|.+.|.|.-|..-|+..
T Consensus 352 ~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~ 396 (466)
T PRK00654 352 RIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPIVRRTGGLADTVI 396 (466)
T ss_pred HHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEEEeCCCCccceee
Confidence 46789999999888 7999999999999999999998777666543
No 30
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=91.65 E-value=0.29 Score=48.29 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=39.6
Q ss_pred ccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 5 LIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 5 ~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
.++.+||+...-|. .|.+|.+-|.+|..|.+.|.|..|..-|+.+.
T Consensus 361 ~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~ 406 (473)
T TIGR02095 361 LIYAGADFILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVD 406 (473)
T ss_pred HHHHhCCEEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEec
Confidence 46789999998877 69999999999999999999988887776543
No 31
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=91.02 E-value=1.2 Score=42.04 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=60.6
Q ss_pred CCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17284 161 ISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD 240 (286)
Q Consensus 161 ~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~ 240 (286)
+.++..+.+++=|+...|.+.+ +..-...+... ....+++++|..-+.+...+++.+.+.+... ..+
T Consensus 186 ~~~~~~~i~~vgrl~~~Kg~~~-----ll~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~-------~~~ 252 (372)
T cd03792 186 IDPERPYITQVSRFDPWKDPFG-----VIDAYRKVKER-VPDPQLVLVGSGATDDPEGWIVYEEVLEYAE-------GDP 252 (372)
T ss_pred CCCCCcEEEEEeccccccCcHH-----HHHHHHHHHhh-CCCCEEEEEeCCCCCCchhHHHHHHHHHHhC-------CCC
Confidence 4567778888999999999986 33222222221 1246788888775554444555444443211 222
Q ss_pred ceeEEEEcCC--ChhhhhhhcccccccccCCCCCCCccC
Q psy17284 241 KLKVVFLENY--RVTLAELIIPAADLSEQISTAGTEASG 277 (286)
Q Consensus 241 ~~~vvfl~nY--~~~~a~~l~~~~Dv~~~~p~~~~EAsG 277 (286)
+|.|+... +-.....+++++|+....|+ .|..|
T Consensus 253 --~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g 287 (372)
T cd03792 253 --DIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFG 287 (372)
T ss_pred --CeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCC
Confidence 47777665 44556678999999887655 45433
No 32
>PRK14098 glycogen synthase; Provisional
Probab=90.19 E-value=0.38 Score=48.34 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=43.7
Q ss_pred cccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhc--CccEEEe
Q psy17284 4 ELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMG--NDNIFIF 61 (286)
Q Consensus 4 e~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg--~eN~fiF 61 (286)
..++.+||+...-|. .|.+|.+-|-+|..|.+.|.|.-|...|...++. ..|.|+|
T Consensus 376 ~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~ 433 (489)
T PRK14098 376 HLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIF 433 (489)
T ss_pred HHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEe
Confidence 357789999988776 7999999999999999999998888777664432 2355555
No 33
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=89.69 E-value=0.15 Score=42.35 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=61.3
Q ss_pred CCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 160 DISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 160 ~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
....+..+.+++-|+..+|+..+ ++.-..++.........+++.| .....+.+..++... + +.
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~-----li~a~~~l~~~~~~~~~l~i~G----~~~~~~~~~~~~~~~----~----~~ 72 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDL-----LIEAFKKLKEKKNPNYKLVIVG----DGEYKKELKNLIEKL----N----LK 72 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHH-----HHHHHHHHHHHHHTTEEEEEES----HCCHHHHHHHHHHHT----T----CG
T ss_pred CCCCCCeEEEEEecCccccCHHH-----HHHHHHHHHhhcCCCeEEEEEc----ccccccccccccccc----c----cc
Confidence 44678889999999999999986 3333333322123467899999 111222222222222 1 12
Q ss_pred CceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 240 DKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 240 ~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
. +|.|+....-.--..++..||+.+++++. |..|++-+
T Consensus 73 ~--~i~~~~~~~~~~l~~~~~~~di~v~~s~~--e~~~~~~~ 110 (172)
T PF00534_consen 73 E--NIIFLGYVPDDELDELYKSSDIFVSPSRN--EGFGLSLL 110 (172)
T ss_dssp T--TEEEEESHSHHHHHHHHHHTSEEEE-BSS--BSS-HHHH
T ss_pred c--cccccccccccccccccccceeccccccc--cccccccc
Confidence 2 48888777655566777889999999887 77776543
No 34
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=89.28 E-value=0.71 Score=43.27 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=57.0
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|+.++|...+ +..-.+++. .+.++++.|.....+....++.+++..+... .+
T Consensus 199 ~~~~~i~~~Grl~~~Kg~~~-----li~a~~~l~----~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~-------~~-- 260 (388)
T TIGR02149 199 RSRPYILFVGRITRQKGVPH-----LLDAVHYIP----KDVQVVLCAGAPDTPEVAEEVRQAVALLDRN-------RT-- 260 (388)
T ss_pred CCceEEEEEcccccccCHHH-----HHHHHHHHh----hcCcEEEEeCCCCcHHHHHHHHHHHHHhccc-------cC--
Confidence 34456778889999999875 333333332 1345666554433333333344443333221 11
Q ss_pred eEEEEcC-CChhhhhhhcccccccccCCCCCCCccCccc
Q psy17284 243 KVVFLEN-YRVTLAELIIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 243 ~vvfl~n-Y~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
+|+|+.. ++-.....++.+||+.+..+. .|..|.+-
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~ 297 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVN 297 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHH
Confidence 3787765 566667888899999998765 47666553
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=88.72 E-value=0.67 Score=41.61 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 162 STSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 162 ~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
.++....+++=|+.+.|+..+ +..-..++... ..+.++++.|+..+.+....+.+ .+..+ +.+
T Consensus 200 ~~~~~~i~~~G~~~~~K~~~~-----li~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~------~~~~~----~~~- 262 (375)
T cd03821 200 LPDKRIILFLGRLHPKKGLDL-----LIEAFAKLAER-FPDWHLVIAGPDEGGYRAELKQI------AAALG----LED- 262 (375)
T ss_pred CCCCcEEEEEeCcchhcCHHH-----HHHHHHHhhhh-cCCeEEEEECCCCcchHHHHHHH------HHhcC----ccc-
Confidence 345567778889999999875 33333333221 24578999998766554433222 22111 222
Q ss_pred eeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 242 LKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 242 ~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
+|.|+...+-+--..++..||+..+.+.. |..|++-+
T Consensus 263 -~v~~~g~~~~~~~~~~~~~adv~v~ps~~--e~~~~~~~ 299 (375)
T cd03821 263 -RVTFTGMLYGEDKAAALADADLFVLPSHS--ENFGIVVA 299 (375)
T ss_pred -eEEEcCCCChHHHHHHHhhCCEEEecccc--CCCCcHHH
Confidence 57787766655556677889999887775 76666543
No 36
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.25 E-value=0.76 Score=41.89 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++-|+.++|++.. +..-.+.+. +..+++.|.. | ....+.+++ +.. .... +
T Consensus 190 ~~~~i~~~G~~~~~K~~~~-----li~a~~~l~-----~~~l~i~G~g-~---~~~~~~~~~----~~~----~~~~--~ 245 (357)
T cd03795 190 GRPFFLFVGRLVYYKGLDV-----LLEAAAALP-----DAPLVIVGEG-P---LEAELEALA----AAL----GLLD--R 245 (357)
T ss_pred CCcEEEEecccccccCHHH-----HHHHHHhcc-----CcEEEEEeCC-h---hHHHHHHHH----Hhc----CCcc--e
Confidence 4567788999999999875 433333332 6888888864 2 122232322 211 1122 5
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
|.|++..+=.....+++.||+-...+....|..|.+
T Consensus 246 V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~ 281 (357)
T cd03795 246 VRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIV 281 (357)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchH
Confidence 999998886666678899999998877667877754
No 37
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=87.17 E-value=3.1 Score=44.65 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=67.9
Q ss_pred hccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCC---CCHHHHHHHHHHHHHHHH
Q psy17284 155 GSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAP---GYYTAKKIIKLICSVARV 231 (286)
Q Consensus 155 ~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P---~d~~~k~~i~~i~~~~~~ 231 (286)
+..|...+|+..+.+++=|+.+.|.... +..-..+++........+|.||...+ .|...+..++.+.++++.
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~-----LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~ 614 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTG-----LVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQ 614 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHH-----HHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHH
Confidence 3446556889999999999999999875 22222222211222344566766543 345566678888888885
Q ss_pred HcCCcCCCCceeEEEEcCC--Chh---hhhhhcccccccccCCCCCCCccCcc
Q psy17284 232 VNNDPDVGDKLKVVFLENY--RVT---LAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 232 ~~~d~~~~~~~~vvfl~nY--~~~---~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
.. +.+ +|.|+--. ... +.+.+..++||..+.|+ .|+.|-+
T Consensus 615 ~g----L~g--~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLv 659 (784)
T TIGR02470 615 YQ----LHG--QIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLT 659 (784)
T ss_pred hC----CCC--eEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHH
Confidence 42 555 67775421 122 33334446789888875 6877744
No 38
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.08 E-value=1 Score=37.77 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=59.2
Q ss_pred cccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcC
Q psy17284 170 QVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLEN 249 (286)
Q Consensus 170 ~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~n 249 (286)
++-|+..+|+..+ +....+++.+ .....++++.|+.++.+...+.+ .... ..+ +|.|++.
T Consensus 109 ~~g~~~~~k~~~~-----~~~a~~~l~~-~~~~~~~~i~G~~~~~~~~~~~~----~~~~--------~~~--~v~~~~~ 168 (229)
T cd01635 109 FVGRLAPEKGLDD-----LIEAFALLKE-RGPDLKLVIAGDGPEREYLEELL----AALL--------LLD--RVIFLGG 168 (229)
T ss_pred EEEeecccCCHHH-----HHHHHHHHHH-hCCCeEEEEEeCCCChHHHHHHH----HhcC--------Ccc--cEEEeCC
Confidence 7778889998875 4333333322 12468999999998877665541 1111 112 5888988
Q ss_pred C-ChhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 250 Y-RVTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 250 Y-~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
+ .-+..+.+..+||+.+..|+. |++|++-+
T Consensus 169 ~~~~~~~~~~~~~~di~l~~~~~--e~~~~~~~ 199 (229)
T cd01635 169 LDPEELLALLLAAADVFVLPSLR--EGFGLVVL 199 (229)
T ss_pred CCcHHHHHHHhhcCCEEEecccc--cCcChHHH
Confidence 7 566777788889999998775 46665543
No 39
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=86.55 E-value=1.6 Score=41.42 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHh-hcCCccceEEEEeecCCCCC-HHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERT-AKGKWHTRTIMIGGKAAPGY-YTAKKIIKLICSVARVVNNDPDVGD 240 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~-~~~~~~p~~~i~~GKa~P~d-~~~k~~i~~i~~~~~~~~~d~~~~~ 240 (286)
++....+++=|+..+|...+ +..-.+++ +..+.....+++.|.+.+.- ..-.++. ++++.++ +.+
T Consensus 217 ~~~~~i~~~G~l~~~K~~~~-----li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~----~~~~~~~----l~~ 283 (405)
T TIGR03449 217 LDTKVVAFVGRIQPLKAPDV-----LLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALI----ELAAELG----IAD 283 (405)
T ss_pred CCCcEEEEecCCCcccCHHH-----HHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHH----HHHHHcC----CCc
Confidence 34566788889999999775 33333333 22233347888888654322 2222233 3333221 223
Q ss_pred ceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 241 KLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 241 ~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+..-.-+-...++++||+....++ .|..|++
T Consensus 284 --~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~ 318 (405)
T TIGR03449 284 --RVRFLPPRPPEELVHVYRAADVVAVPSY--NESFGLV 318 (405)
T ss_pred --eEEECCCCCHHHHHHHHHhCCEEEECCC--CCCcChH
Confidence 5888775555566678999999987765 4655554
No 40
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.78 E-value=6.8 Score=38.97 Aligned_cols=105 Identities=11% Similarity=-0.072 Sum_probs=62.8
Q ss_pred CCCCcccccccCCCCccccchhhHHhhHHHHHHh-hcCCc--cceEEEEeecCCCCC-HHHHHHHHHHHHHHHHHcCCcC
Q psy17284 162 STSTSSSGQVESSFPETGQKFAALITIFLIEERT-AKGKW--HTRTIMIGGKAAPGY-YTAKKIIKLICSVARVVNNDPD 237 (286)
Q Consensus 162 ~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~-~~~~~--~p~~~i~~GKa~P~d-~~~k~~i~~i~~~~~~~~~d~~ 237 (286)
.++..+.+++=|+...|.... +..-.+++ +..+. ..+++++.|-..-++ ..-.++.+.+.+++..+|..-.
T Consensus 261 ~~~~~~il~vgRl~~~Kgi~~-----ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g 335 (460)
T cd03788 261 LGGRKLIVGVDRLDYSKGIPE-----RLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFG 335 (460)
T ss_pred cCCCEEEEEecCccccCCHHH-----HHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccC
Confidence 345667888999999999875 32222332 22222 124555444433222 3445677888888877764211
Q ss_pred CCCceeEEEEcCC-ChhhhhhhcccccccccCCCC
Q psy17284 238 VGDKLKVVFLENY-RVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 238 ~~~~~~vvfl~nY-~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
..+.-.|+|+..+ +-+--..++++||+.+.+|.+
T Consensus 336 ~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~ 370 (460)
T cd03788 336 TLDWTPVRYLYRSLPREELAALYRAADVALVTPLR 370 (460)
T ss_pred CCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccc
Confidence 1112348887643 666666788999999988764
No 41
>KOG2074|consensus
Probab=82.40 E-value=2.2 Score=43.20 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=99.7
Q ss_pred cccccccccccc-ccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCcc
Q psy17284 3 AELIIPAADLSE-QISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSY 81 (286)
Q Consensus 3 ae~iipa~Dis~-qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~ 81 (286)
+..++|+.+.|. .+..-++|||+||+-|.-.+++.. +| |.-..+.+|..-+-++.|-+.++-+.
T Consensus 138 ~s~~ls~eeFWStrl~ll~~~a~~tS~QqvGi~~a~L-s~-------IkP~t~~~N~v~~NLt~eiI~~IF~~------- 202 (548)
T KOG2074|consen 138 VSKVLSPEEFWSTRLNLLRADASSTSNQQVGIYNAVL-ST-------IKPQTDGCNGVKVNLTSEIIEQIFET------- 202 (548)
T ss_pred HhcCCCHHHHHHHHhhhhhhhhcccchhhcChhHHHh-hc-------cccccCCCCceeeecCHHHHHHHHHh-------
Confidence 345677778775 466778999999999998888642 22 11222457999999999888766443
Q ss_pred ccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcCCCCeeeccCCchHHHHHHHHHHhcCCcchhHHHHHhhccCCCC
Q psy17284 82 YNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDI 161 (286)
Q Consensus 82 ~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~D~ylvlaY~d~~~W~k~~i~IA~~g~FSSDi~eY~~~~tG~~~ 161 (286)
-|.++.... ...++ .+..++-|+|--. | .|+.+..|..+
T Consensus 203 ---yPaVkk~y~--------------------e~VP~------nmtE~eFWtrFFq---------S---~yf~r~R~~~i 241 (548)
T KOG2074|consen 203 ---YPAVKKKYA--------------------ENVPH------NMTEKEFWTRFFQ---------S---HYFHRLRGNTI 241 (548)
T ss_pred ---ChHHHHHHH--------------------hhCCc------cccchhHHHHHHH---------H---HHHHHHhcccC
Confidence 455554422 22221 1455666776532 2 55666666677
Q ss_pred CCCCcccccccCCC----C--------ccccchhhHHhhHHHHHHhh----cCCccceEEEEeecCCCCCHHHHH-HHHH
Q psy17284 162 STSTSSSGQVESSF----P--------ETGQKFAALITIFLIEERTA----KGKWHTRTIMIGGKAAPGYYTAKK-IIKL 224 (286)
Q Consensus 162 ~~~~~~~~~~rR~~----~--------YKR~~l~~l~~i~~~~~~~~----~~~~~p~~~i~~GKa~P~d~~~k~-~i~~ 224 (286)
.|..+++.-+++-- + -|+++| |++.+. ....+|-..-++++.-|....+|. +||.
T Consensus 242 ~p~D~~ae~~~~~l~~eeel~k~~~e~i~~~ll--------DLd~~~d~p~~~g~~i~~~~~~~~~~~~~~~~~~~liK~ 313 (548)
T KOG2074|consen 242 SPKDPSAECADIDLFPEEELTKMVDEKIKNPLL--------DLDANDDKPLDEGYGISSVPSASNSESQNDNSKAALIKR 313 (548)
T ss_pred CCCCchHHHHHhhcchHHHHHHHHHHhhhcccc--------ccccCCCcccccccCcccCCCCCcccccccchhhHHHHH
Confidence 77777776665430 0 112222 222211 011223334567777777777765 5999
Q ss_pred HHHHHHHH
Q psy17284 225 ICSVARVV 232 (286)
Q Consensus 225 i~~~~~~~ 232 (286)
+|++|.++
T Consensus 314 ~N~lSe~v 321 (548)
T KOG2074|consen 314 FNRLSEKV 321 (548)
T ss_pred HhHHHHHH
Confidence 99999865
No 42
>PRK14099 glycogen synthase; Provisional
Probab=81.41 E-value=3.2 Score=41.67 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=35.9
Q ss_pred ccccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhh
Q psy17284 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAE 51 (286)
Q Consensus 3 ae~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e 51 (286)
++.+..+||+-..-|. .|.+|.+-|-+|.-|.+-|.|.-|.-.|+..
T Consensus 363 ~~~~~a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~ 409 (485)
T PRK14099 363 AHLIQAGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTVV 409 (485)
T ss_pred HHHHHhcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccceee
Confidence 3344567999998777 6999999999999997666676666555443
No 43
>PLN00142 sucrose synthase
Probab=81.29 E-value=6.2 Score=42.53 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=62.7
Q ss_pred CCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEE-eecCCCC---CHHHHHHHHHHHHHHHHHc
Q psy17284 158 HRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMI-GGKAAPG---YYTAKKIIKLICSVARVVN 233 (286)
Q Consensus 158 G~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~-~GKa~P~---d~~~k~~i~~i~~~~~~~~ 233 (286)
|..-+++..+.+.+=|+.++|.... +..-..++.+.. ....+++ ||...|. +...+..++.+.++++.+
T Consensus 566 g~l~~~~kpvIl~VGRL~~~KGid~-----LIeA~a~l~~l~-~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~l- 638 (815)
T PLN00142 566 GYLKDRKKPIIFSMARLDRVKNLTG-----LVEWYGKNKRLR-ELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKY- 638 (815)
T ss_pred CCccCCCCcEEEEEecCcccCCHHH-----HHHHHHHHHHhC-CCcEEEEEECCccccccccHHHHHHHHHHHHHHHHc-
Confidence 4334677888999999999999875 322222222211 1244544 5432332 334445566677777743
Q ss_pred CCcCCCCceeEEEEcC---CC--hhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 234 NDPDVGDKLKVVFLEN---YR--VTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 234 ~d~~~~~~~~vvfl~n---Y~--~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
.+.+ +|.|+.. +. -.+.+.+..++|+..+.|+ .|+.|.+
T Consensus 639 ---gL~~--~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLv 682 (815)
T PLN00142 639 ---NLKG--QFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLT 682 (815)
T ss_pred ---CCCC--cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHH
Confidence 3555 5777642 21 2344545557899988765 5777754
No 44
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=80.77 E-value=3.4 Score=37.37 Aligned_cols=95 Identities=17% Similarity=0.022 Sum_probs=58.9
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++-|+..+|+..+ +..-...+.... .++++++.|...+.+..-...+ +.. ...+
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~-----~l~~~~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~-------~~~----~~~~-- 253 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLER-----LLEAFARLPAKG-PDPKLVIVGKRGWLNEELLARL-------REL----GLGD-- 253 (365)
T ss_pred CCCCeEEEeCCCccccCHHH-----HHHHHHHHHHhc-CCCCEEEecCCccccHHHHHHH-------HHc----CCCC--
Confidence 34567788899999999775 333333332211 1578888887766666544433 111 1222
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGT 278 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGT 278 (286)
+|.|+...+-.....++..||+.+..++ .|..|.
T Consensus 254 ~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~~~ 287 (365)
T cd03809 254 RVRFLGYVSDEELAALYRGARAFVFPSL--YEGFGL 287 (365)
T ss_pred eEEECCCCChhHHHHHHhhhhhhcccch--hccCCC
Confidence 5888877766667788899999887654 354443
No 45
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=80.44 E-value=6.6 Score=37.60 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=57.1
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCC-CHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPG-YYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~-d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
++....+++=|+..+|.... +..-..++.+ ...+..+++.|..... +..-..+.+.+.++++.++.
T Consensus 191 ~~~~~il~~Grl~~~Kg~~~-----Li~A~~~l~~-~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~------- 257 (380)
T PRK15484 191 PDETVLLYAGRISPDKGILL-----LMQAFEKLAT-AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGD------- 257 (380)
T ss_pred CCCeEEEEeccCccccCHHH-----HHHHHHHHHH-hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCC-------
Confidence 35566777889999999875 3333333321 1224677777754322 22223455666666665432
Q ss_pred eeEEEEcCCChhhhhhhcccccccccCCC
Q psy17284 242 LKVVFLENYRVTLAELIIPAADLSEQIST 270 (286)
Q Consensus 242 ~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~ 270 (286)
+|.|+..-.-+....++++||+....|.
T Consensus 258 -~v~~~G~~~~~~l~~~~~~aDv~v~pS~ 285 (380)
T PRK15484 258 -RCIMLGGQPPEKMHNYYPLADLVVVPSQ 285 (380)
T ss_pred -cEEEeCCCCHHHHHHHHHhCCEEEeCCC
Confidence 5888876655566678899999987653
No 46
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=80.38 E-value=1.6 Score=36.00 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=42.7
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 64 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~ 64 (286)
++-.||+.-+.|+. |..|++-+-+|..|.+.|.|..|.+-|+.++ ..|.++|-..
T Consensus 89 ~~~~~di~v~~s~~--e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~--~~~g~~~~~~ 143 (172)
T PF00534_consen 89 LYKSSDIFVSPSRN--EGFGLSLLEAMACGCPVIASDIGGNNEIIND--GVNGFLFDPN 143 (172)
T ss_dssp HHHHTSEEEE-BSS--BSS-HHHHHHHHTT-EEEEESSTHHHHHSGT--TTSEEEESTT
T ss_pred ccccceeccccccc--cccccccccccccccceeeccccCCceeecc--ccceEEeCCC
Confidence 45568999888888 9999999999999999999999999898876 3367776433
No 47
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=79.84 E-value=4.4 Score=37.00 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=57.7
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|+...|++.. +..-...+... ..+..+++.|.--+.+..-+.+.+++.+.. +.+
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~-----li~~~~~l~~~-~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~--------~~~-- 246 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEV-----FIEALARLKKD-DPDVHLLIVGDAQGRRFYYAELLELIKRLG--------LQD-- 246 (355)
T ss_pred CCceEEEEeeccccccCHHH-----HHHHHHHHHhc-CCCeEEEEEECCcccchHHHHHHHHHHHcC--------Ccc--
Confidence 34556777888888998875 33333333221 346889999987665544444444433322 122
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+.. .+--..++.+||+.+..+. ..|..|++
T Consensus 247 ~v~~~g~--~~~~~~~l~~ad~~i~ps~-~~e~~~~~ 280 (355)
T cd03819 247 RVTFVGH--CSDMPAAYALADIVVSAST-EPEAFGRT 280 (355)
T ss_pred eEEEcCC--cccHHHHHHhCCEEEecCC-CCCCCchH
Confidence 4777766 3333466788999887763 35655543
No 48
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=79.06 E-value=6.8 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=55.0
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|++++|...+ +..-.+++.+. ..+.++++.|.-++....-+.... +..+.. .+.+
T Consensus 183 ~~~~~i~~~G~~~~~K~~~~-----ll~a~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~---~~i~~~----~~~~-- 247 (366)
T cd03822 183 DGRPVLLTFGLLRPYKGLEL-----LLEALPLLVAK-HPDVRLLVAGETHPDLERYRGEAY---ALAERL----GLAD-- 247 (366)
T ss_pred CCCeEEEEEeeccCCCCHHH-----HHHHHHHHHhh-CCCeEEEEeccCccchhhhhhhhH---hHHHhc----CCCC--
Confidence 34556777889999998764 33333333221 246789999987776544322100 112211 1222
Q ss_pred eEEEEcC-CChhhhhhhcccccccccCCC
Q psy17284 243 KVVFLEN-YRVTLAELIIPAADLSEQIST 270 (286)
Q Consensus 243 ~vvfl~n-Y~~~~a~~l~~~~Dv~~~~p~ 270 (286)
+|.|++. .+-+....+++.||+....++
T Consensus 248 ~v~~~~~~~~~~~~~~~~~~ad~~v~ps~ 276 (366)
T cd03822 248 RVIFINRYLPDEELPELFSAADVVVLPYR 276 (366)
T ss_pred cEEEecCcCCHHHHHHHHhhcCEEEeccc
Confidence 6899988 555566678889999886544
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=78.88 E-value=3.8 Score=38.02 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=54.6
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeec-CCCCCHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGK-AAPGYYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GK-a~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
++....+++=|+..+|...+ +..-...+... ..+.++++.|. ..+.......- +..+.+..+ +.+
T Consensus 218 ~~~~~i~~~gr~~~~k~~~~-----ll~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~---~~~~~~~~~----~~~- 283 (398)
T cd03800 218 PDKPRILAVGRLDPRKGIDT-----LIRAYAELPEL-RERANLVIVGGPRDDILAMDEEE---LRELARELG----VID- 283 (398)
T ss_pred CCCcEEEEEcccccccCHHH-----HHHHHHHHHHh-CCCeEEEEEECCCCcchhhhhHH---HHHHHHhcC----CCc-
Confidence 34556677888888888764 33323333221 22456655554 33322222222 333333221 122
Q ss_pred eeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 242 LKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 242 ~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|++-.+-+....+++.||+.+..+. .|..|.+
T Consensus 284 -~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~ 318 (398)
T cd03800 284 -RVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLT 318 (398)
T ss_pred -eEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcH
Confidence 5888887777667777888999887665 3555543
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=78.70 E-value=2.4 Score=37.69 Aligned_cols=95 Identities=15% Similarity=-0.000 Sum_probs=58.1
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++=|+..+|+..+ +..-.+.+.. ...+.++++.|...+.+...+. ++... +. .. +
T Consensus 187 ~~~~i~~~G~~~~~k~~~~-----li~~~~~l~~-~~~~~~l~i~G~~~~~~~~~~~---~~~~~----~~----~~--~ 247 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDE-----LLEAARILKA-KGPNVRLLLVGDGDEENPAAIL---EIEKL----GL----EG--R 247 (359)
T ss_pred CCcEEEEEeccccccCHHH-----HHHHHHHHHh-cCCCeEEEEEcCCCcchhhHHH---HHHhc----CC----cc--e
Confidence 4566777888888998775 4333333322 1235889999998877665544 11111 11 11 5
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
|.|+.. .+-...++..||+.+..+.. |..|++-+
T Consensus 248 v~~~g~--~~~~~~~~~~adi~i~ps~~--e~~~~~~~ 281 (359)
T cd03808 248 VEFLGF--RDDVPELLAAADVFVLPSYR--EGLPRVLL 281 (359)
T ss_pred EEEeec--cccHHHHHHhccEEEecCcc--cCcchHHH
Confidence 777665 44455678889998876654 76665543
No 51
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=77.94 E-value=3.3 Score=39.56 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|+.+.|++.+ +..-...+.+ ...+.+++++|.. |. +..+ .++.+.. .+.+
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~-----li~a~~~l~~-~~~~~~l~i~G~g-~~----~~~l---~~~~~~~----~l~~-- 250 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDL-----LVGIIPEICK-KHPNVRFIIGGDG-PK----RILL---EEMREKY----NLQD-- 250 (398)
T ss_pred CCceEEEEEeccchhcCHHH-----HHHHHHHHHh-hCCCEEEEEEeCC-ch----HHHH---HHHHHHh----CCCC--
Confidence 45667788889999999875 2222222221 1235788888863 32 2222 2222221 1233
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+...+-+-...+++++|+.+..|+ .|..|.+
T Consensus 251 ~v~~~G~~~~~~~~~~l~~ad~~v~pS~--~E~~g~~ 285 (398)
T cd03796 251 RVELLGAVPHERVRDVLVQGHIFLNTSL--TEAFCIA 285 (398)
T ss_pred eEEEeCCCCHHHHHHHHHhCCEEEeCCh--hhccCHH
Confidence 6888876666667778899999998876 4776654
No 52
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=76.26 E-value=10 Score=36.98 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=57.4
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhh-cCCc---cceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTA-KGKW---HTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~-~~~~---~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
+....+.+=|+...|+..+ +.+-...+. ..+. .+..++++|.....+. ....+.+.++++.++ +.
T Consensus 236 ~~~~il~vgr~~~~K~~~~-----li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~--~~~~~~L~~~~~~l~----l~ 304 (419)
T cd03806 236 RENQILSIAQFRPEKNHPL-----QLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDD--EKRVEDLKLLAKELG----LE 304 (419)
T ss_pred CCcEEEEEEeecCCCCHHH-----HHHHHHHHHHhCcccccCceEEEEEcCCCCccc--HHHHHHHHHHHHHhC----CC
Confidence 3456777889999999875 333222222 2222 2466777776432221 224444555555432 33
Q ss_pred CceeEEEEcCCChhhhhhhcccccccccCCCC
Q psy17284 240 DKLKVVFLENYRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 240 ~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
+ +|.|+.+-+-+.-..+++.||+.+++|..
T Consensus 305 ~--~V~f~g~v~~~~l~~~l~~adv~v~~s~~ 334 (419)
T cd03806 305 D--KVEFVVNAPFEELLEELSTASIGLHTMWN 334 (419)
T ss_pred C--eEEEecCCCHHHHHHHHHhCeEEEECCcc
Confidence 3 69999876666667888999999887764
No 53
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=75.91 E-value=5 Score=36.67 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=55.3
Q ss_pred CCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 162 STSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 162 ~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
.++....+++=|+..+|+..+ +..-...+.+. ..+.++++.|..... . .+.+.++..+ +.+
T Consensus 189 ~~~~~~i~~vGr~~~~Kg~~~-----li~a~~~l~~~-~~~~~l~ivG~g~~~----~----~~~~~~~~~~----~~~- 249 (358)
T cd03812 189 LEDKFVIGHVGRFSEQKNHEF-----LIEIFAELLKK-NPNAKLLLVGDGELE----E----EIKKKVKELG----LED- 249 (358)
T ss_pred CCCCEEEEEEeccccccChHH-----HHHHHHHHHHh-CCCeEEEEEeCCchH----H----HHHHHHHhcC----CCC-
Confidence 356677888999999999875 43333333321 235788888854321 1 2222233221 222
Q ss_pred eeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 242 LKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 242 ~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+.- .+-...++..||+..+.|+ .|..|.+
T Consensus 250 -~v~~~g~--~~~~~~~~~~adi~v~ps~--~E~~~~~ 282 (358)
T cd03812 250 -KVIFLGV--RNDVPELLQAMDVFLFPSL--YEGLPLV 282 (358)
T ss_pred -cEEEecc--cCCHHHHHHhcCEEEeccc--ccCCCHH
Confidence 4666654 4445567899999998876 3665544
No 54
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=73.17 E-value=4.9 Score=38.34 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=53.3
Q ss_pred CCCcccccccC-CCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHH----HH-HHHHHHHHHHHHHcCCc
Q psy17284 163 TSTSSSGQVES-SFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYT----AK-KIIKLICSVARVVNNDP 236 (286)
Q Consensus 163 ~~~~~~~~~rR-~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~----~k-~~i~~i~~~~~~~~~d~ 236 (286)
++....+++=| +.++|...+ +..-..++.+. ..+..+++.|...|.|.. +. ..-+++.+++..+..
T Consensus 209 ~~~~~i~~vgR~l~~~Kg~~~-----ll~a~~~l~~~-~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 280 (396)
T cd03818 209 PGDEVITFVARNLEPYRGFHV-----FMRALPRLLRA-RPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDL-- 280 (396)
T ss_pred CCCeEEEEECCCcccccCHHH-----HHHHHHHHHHH-CCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCc--
Confidence 34445666665 888888765 33333333221 234678888875554321 11 111223333332111
Q ss_pred CCCCceeEEEEcCCChhhhhhhcccccccccCCCC
Q psy17284 237 DVGDKLKVVFLENYRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 237 ~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
+ +|.|+....-.....+++.+|+....+++
T Consensus 281 ---~--~V~f~G~v~~~~~~~~l~~adv~v~~s~~ 310 (396)
T cd03818 281 ---S--RVHFLGRVPYDQYLALLQVSDVHVYLTYP 310 (396)
T ss_pred ---c--eEEEeCCCCHHHHHHHHHhCcEEEEcCcc
Confidence 1 68999876655666778999999877663
No 55
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=71.86 E-value=7.9 Score=38.37 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=56.1
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++.+..+++=|+..+|.... +..-...+.+. ...+.+++.|.........+ .+.++++.++ +.+
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~~-~p~~~l~IvG~g~~~~~~~~----e~~~li~~l~----l~~-- 354 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKT-----FIRAAAIVRKK-IPDAEGWVIGPTDEDPEYAE----ECRELVESLG----LED-- 354 (475)
T ss_pred CCCcEEEEEeccccccCHHH-----HHHHHHHHHHh-CCCeEEEEECCCCcChHHHH----HHHHHHHHhC----CCC--
Confidence 45667888999999999764 33333333221 23578888886543333333 3344444322 222
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGT 278 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGT 278 (286)
+|.|+. ...+. .+++.+|+...+|. .|+.|+
T Consensus 355 ~V~f~G--~~~v~-~~l~~aDv~vlpS~--~Eg~p~ 385 (475)
T cd03813 355 NVKFTG--FQNVK-EYLPKLDVLVLTSI--SEGQPL 385 (475)
T ss_pred eEEEcC--CccHH-HHHHhCCEEEeCch--hhcCCh
Confidence 588887 33444 45689999998876 365554
No 56
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=69.47 E-value=7 Score=34.81 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++..+.+++=|+..+|+... +..-.+.+.+. ..+..+++.|+....+. -+...+ +.. .+.+
T Consensus 191 ~~~~~i~~~G~~~~~K~~~~-----li~a~~~l~~~-~~~~~l~i~G~~~~~~~-~~~~~~------~~~----~~~~-- 251 (365)
T cd03807 191 EDTFLIGIVARLHPQKDHAT-----LLRAAALLLKK-FPNARLLLVGDGPDRAN-LELLAL------KEL----GLED-- 251 (365)
T ss_pred CCCeEEEEecccchhcCHHH-----HHHHHHHHHHh-CCCeEEEEecCCcchhH-HHHHHH------Hhc----CCCc--
Confidence 34456678888889998764 33333333221 33578999998654332 222222 111 1222
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
.|.|+.. ++-...+++.||+-++.+.. |..|++
T Consensus 252 ~v~~~g~--~~~~~~~~~~adi~v~ps~~--e~~~~~ 284 (365)
T cd03807 252 KVILLGE--RSDVPALLNALDVFVLSSLS--EGFPNV 284 (365)
T ss_pred eEEEccc--cccHHHHHHhCCEEEeCCcc--ccCCcH
Confidence 4666653 23345678899998876554 665554
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=69.46 E-value=6.7 Score=34.57 Aligned_cols=94 Identities=19% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|+.+.|+..+ +..-.+.+... ..++++++.|.....+. +.+. .+.++ ..+
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~-----~i~~~~~l~~~-~~~~~l~i~G~~~~~~~----~~~~----~~~~~----~~~-- 246 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDT-----LIRAFALLRKE-GPDARLVILGDGPLREE----LEAL----AKELG----LAD-- 246 (353)
T ss_pred CCceEEEEEecchhhcChHH-----HHHHHHHhhhc-CCCceEEEEcCCccHHH----HHHH----HHhcC----CCc--
Confidence 34456677778888888764 33333333222 24678888886543322 1122 22221 122
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCccc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
+|.|+... +-...++..||+.+..+.. |..|++-
T Consensus 247 ~v~~~g~~--~~~~~~~~~~d~~i~ps~~--e~~~~~~ 280 (353)
T cd03811 247 RVHFLGFQ--SNPYPYLKAADLFVLSSRY--EGFPNVL 280 (353)
T ss_pred cEEEeccc--CCHHHHHHhCCEEEeCccc--CCCCcHH
Confidence 46666543 3345678899999876653 6666653
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.23 E-value=7.5 Score=35.82 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=50.2
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeE
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~v 244 (286)
....+.+=|+.++|+... +..-.+++.. ..|.++++.|.. |.. +.+. +..+..+ +.+ +|
T Consensus 197 ~~~il~~g~l~~~K~~~~-----li~a~~~l~~--~~~~~l~i~G~g-~~~---~~~~----~~~~~~~----~~~--~v 255 (371)
T cd04962 197 EKVLIHISNFRPVKRIDD-----VIRIFAKVRK--EVPARLLLVGDG-PER---SPAE----RLARELG----LQD--DV 255 (371)
T ss_pred CeEEEEecccccccCHHH-----HHHHHHHHHh--cCCceEEEEcCC-cCH---HHHH----HHHHHcC----CCc--eE
Confidence 344556778888888764 3222233322 246788888864 221 2222 2223221 223 57
Q ss_pred EEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 245 vfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
.|+... +-...++..||+....+. +|+.|.+
T Consensus 256 ~~~g~~--~~~~~~~~~~d~~v~ps~--~E~~~~~ 286 (371)
T cd04962 256 LFLGKQ--DHVEELLSIADLFLLPSE--KESFGLA 286 (371)
T ss_pred EEecCc--ccHHHHHHhcCEEEeCCC--cCCCccH
Confidence 777743 334566889999888764 5665543
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=67.55 E-value=10 Score=33.42 Aligned_cols=37 Identities=24% Similarity=0.073 Sum_probs=26.8
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
+|.|++...-.-...++..||+.++.+.. |+.|++-+
T Consensus 257 ~v~~~g~~~~~~~~~~~~~~di~i~~~~~--~~~~~~~~ 293 (374)
T cd03801 257 RVTFLGFVPDEDLPALYAAADVFVLPSLY--EGFGLVLL 293 (374)
T ss_pred ceEEEeccChhhHHHHHHhcCEEEecchh--ccccchHH
Confidence 58888877656667778889999987665 66665443
No 60
>PLN02949 transferase, transferring glycosyl groups
Probab=67.33 E-value=22 Score=35.57 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=51.0
Q ss_pred cccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeec-CCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeE
Q psy17284 166 SSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGK-AAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244 (286)
Q Consensus 166 ~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GK-a~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~v 244 (286)
...+.+=|+.+.|+..+ ++..+....+++.. ...+..++++|. ..+.|.. ..+.+.++++.. .+.+ +|
T Consensus 269 ~~il~vGR~~~~Kg~~l-lI~A~~~l~~~~~~-~~~~~~LvIvG~~~~~~~~~---~~~eL~~la~~l----~L~~--~V 337 (463)
T PLN02949 269 PYIISVAQFRPEKAHAL-QLEAFALALEKLDA-DVPRPKLQFVGSCRNKEDEE---RLQKLKDRAKEL----GLDG--DV 337 (463)
T ss_pred CEEEEEEeeeccCCHHH-HHHHHHHHHHhccc-cCCCcEEEEEeCCCCcccHH---HHHHHHHHHHHc----CCCC--cE
Confidence 34556778999999886 22222111111211 112345555554 3444432 223334444432 2333 59
Q ss_pred EEEcCCChhhhhhhcccccccccCCC
Q psy17284 245 VFLENYRVTLAELIIPAADLSEQIST 270 (286)
Q Consensus 245 vfl~nY~~~~a~~l~~~~Dv~~~~p~ 270 (286)
.|+.+-.-+.-..++..||+.+++|.
T Consensus 338 ~f~g~v~~~el~~ll~~a~~~v~~s~ 363 (463)
T PLN02949 338 EFHKNVSYRDLVRLLGGAVAGLHSMI 363 (463)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCc
Confidence 99988765666667788899887664
No 61
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=67.26 E-value=10 Score=33.91 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++=|+..+|...+ +..-.+++.+. .+.++++.|.....+ .+.+++ .. ....
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~-----l~~~~~~l~~~--~~~~l~i~G~~~~~~----~~~~~~----~~----~~~~--- 275 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDT-----LLEAAALLKDR--PDIRFLIVGDGPEKE----ELKELA----KA----LGLD--- 275 (394)
T ss_pred CCcEEEEEecCcccccCHHH-----HHHHHHHHhhc--CCeEEEEeCCcccHH----HHHHHH----HH----cCCC---
Confidence 34556777888888888765 33333333322 467888888643321 111111 11 1112
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCC
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAG 272 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~ 272 (286)
.|.|++..+-+....+++.||+-...+...
T Consensus 276 ~v~~~g~~~~~~~~~~~~~~di~i~~~~~~ 305 (394)
T cd03794 276 NVTFLGRVPKEELPELLAAADVGLVPLKPG 305 (394)
T ss_pred cEEEeCCCChHHHHHHHHhhCeeEEeccCc
Confidence 489998666666677889999998776654
No 62
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=66.54 E-value=11 Score=33.74 Aligned_cols=95 Identities=22% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
++....+++-|+..+|+... +..-.+++... ..+.++++.|... ..+.+.+++ +..+ ..+
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~-----l~~~~~~~~~~-~~~~~l~i~G~~~----~~~~~~~~~----~~~~----~~~-- 259 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDF-----LIRAFARLLKE-EPDVKLVIVGDGP----EREELEELA----RELG----LAD-- 259 (374)
T ss_pred CCCeEEEEEeeeecccCHHH-----HHHHHHHHHHh-CCCeEEEEEeCCc----hHHHHHHHH----HHcC----CCC--
Confidence 44566778888888888764 33333333221 2457888888642 122222222 2221 112
Q ss_pred eEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|++..+-+....+++.||+.++.+. .|..|++
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~ 294 (374)
T cd03817 260 RVIFTGFVPREELPDYYKAADLFVFAST--TETQGLV 294 (374)
T ss_pred cEEEeccCChHHHHHHHHHcCEEEeccc--ccCcChH
Confidence 5888888776667778889999987764 3555443
No 63
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=65.75 E-value=14 Score=36.10 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecC-CCCCH--HHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKA-APGYY--TAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa-~P~d~--~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
|+..+.+++=|+.+.|.+.+ +..-..++......+..++++|.. ..... ..++..+.+.++++.+ .+.
T Consensus 246 ~~~~~i~~vGrl~~~Kg~~~-----li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~----~l~ 316 (439)
T TIGR02472 246 PEKPPILAISRPDRRKNIPS-----LVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRY----DLY 316 (439)
T ss_pred cCCcEEEEEcCCcccCCHHH-----HHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHc----CCC
Confidence 44556778889999999875 322222211111123334455642 22111 2233444455555532 244
Q ss_pred CceeEEEEcCCChhhhhhhcccc----cccccCCCCCCCccCc
Q psy17284 240 DKLKVVFLENYRVTLAELIIPAA----DLSEQISTAGTEASGT 278 (286)
Q Consensus 240 ~~~~vvfl~nY~~~~a~~l~~~~----Dv~~~~p~~~~EAsGT 278 (286)
+ +|.|+....-+.-..+++++ |+....|+ .|+.|.
T Consensus 317 ~--~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~ 355 (439)
T TIGR02472 317 G--KVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGL 355 (439)
T ss_pred c--eEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCccc
Confidence 4 67787654433334445544 88766554 465543
No 64
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=65.33 E-value=7.9 Score=34.11 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=43.5
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 64 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~ 64 (286)
++-.||+--..++. |..|+.-+-++..|...|+|..|..-|+.+. .++.+++...
T Consensus 272 ~~~~~di~i~~~~~--~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~--~~~g~~~~~~ 326 (374)
T cd03801 272 LYAAADVFVLPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVED--GETGLLVPPG 326 (374)
T ss_pred HHHhcCEEEecchh--ccccchHHHHHHcCCcEEEeCCCChhHHhcC--CcceEEeCCC
Confidence 44567887776666 8999999999999999999998888887764 5666776555
No 65
>PLN02939 transferase, transferring glycosyl groups
Probab=64.23 E-value=14 Score=40.62 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=39.7
Q ss_pred cccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 4 ELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 4 e~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
..++.+||+-..-|. .|.+|-+-|-+|--|.+.|.|.-|.-.|...+
T Consensus 851 h~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d 897 (977)
T PLN02939 851 HSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFD 897 (977)
T ss_pred HHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeec
Confidence 357899999998887 69999999999999999999988876665543
No 66
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=64.02 E-value=11 Score=35.19 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=38.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCC-ceehhhhhhcCccEEEe
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDG-ANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DG-anvEi~e~vg~eN~fiF 61 (286)
++..||+.-..|. .|.-|.+-+-+|..|.+.|+|.-| ..-|+.+. .+|.+++
T Consensus 275 ~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~--~~~G~lv 327 (372)
T cd04949 275 VYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIED--GENGYLV 327 (372)
T ss_pred HHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHccc--CCCceEe
Confidence 4667888888887 588899999999999999999755 34454432 3455554
No 67
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=63.27 E-value=38 Score=33.90 Aligned_cols=102 Identities=12% Similarity=-0.015 Sum_probs=58.8
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHH-hhcCCc--cceEEEE-eecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEER-TAKGKW--HTRTIMI-GGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD 240 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~-~~~~~~--~p~~~i~-~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~ 240 (286)
..+.+.|=|++.-|.... ++.-.++ +++.+. ..+++|. ||-..-....-.++-+++.+++..||..-..-+
T Consensus 259 ~~vIl~VgRLd~~KGi~~-----ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~ 333 (456)
T TIGR02400 259 RKLIIGVDRLDYSKGLPE-----RLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLD 333 (456)
T ss_pred CeEEEEccccccccCHHH-----HHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346677889999998765 3333333 233332 1344554 433222223335677778888777775211122
Q ss_pred ceeEEEEcC-CChhhhhhhcccccccccCCCC
Q psy17284 241 KLKVVFLEN-YRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 241 ~~~vvfl~n-Y~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
...|+|+.. .+-+--..+..++||.+-+|.+
T Consensus 334 ~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~ 365 (456)
T TIGR02400 334 WTPIRYLNRSYDREELMALYRAADVGLVTPLR 365 (456)
T ss_pred CccEEEEcCCCCHHHHHHHHHhCcEEEECccc
Confidence 234777764 3455556678999999988764
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.94 E-value=9.7 Score=34.55 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=45.4
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~ 63 (286)
++..||+--..|+...|..|.+-+-+|..|...|+|..|..-|..+. .++|.+++..
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~-~~~~g~~~~~ 316 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL-HGVTGLVVPP 316 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh-CCCceEEeCC
Confidence 45678888887877789999988899999999999998887776654 3567777654
No 69
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=61.79 E-value=22 Score=34.50 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=42.8
Q ss_pred cccccccccccccCc----ccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAG----TEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag----~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+--.-|..+ .|..|..-|=+|.-|...|+|..|...|+.+. ++|.+++.
T Consensus 295 ~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~--~~~G~lv~ 353 (406)
T PRK15427 295 MLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEA--DKSGWLVP 353 (406)
T ss_pred HHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcC--CCceEEeC
Confidence 466788888777654 58888888999999999999998888777654 45666653
No 70
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=61.45 E-value=22 Score=32.90 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=39.0
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEe
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiF 61 (286)
++.+||+-..-|. .|..|..-+-+|..|.+.|++..|..-|+.++ .++.+++
T Consensus 299 ~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~--~~~g~~~ 350 (398)
T cd03800 299 LYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVD--GVTGLLV 350 (398)
T ss_pred HHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccC--CCCeEEe
Confidence 4567888766554 58899999999999999999998887776543 2355555
No 71
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=60.45 E-value=27 Score=30.94 Aligned_cols=94 Identities=19% Similarity=0.106 Sum_probs=53.5
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++-|+..+|.... +..-.+.+... ..+..+++.|...+.+ .+.+++ +. ....+ .
T Consensus 201 ~~~~i~~~g~~~~~k~~~~-----li~~~~~~~~~-~~~~~l~i~g~~~~~~----~~~~~~----~~----~~~~~--~ 260 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDY-----LIEALARLLKK-RPDVHLVIVGDGPLRE----ALEALA----AE----LGLED--R 260 (377)
T ss_pred CceEEEEeccCccccCHHH-----HHHHHHHHHhc-CCCeEEEEEcCCcchH----HHHHHH----Hh----cCCcc--e
Confidence 4455677778888777654 33333333222 3467888888754422 222222 21 11222 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
|.|++..+=.....++..||+.+..+.. |..|++
T Consensus 261 v~~~g~~~~~~~~~~~~~ad~~i~~~~~--~~~~~~ 294 (377)
T cd03798 261 VTFLGAVPHEEVPAYYAAADVFVLPSLR--EGFGLV 294 (377)
T ss_pred EEEeCCCCHHHHHHHHHhcCeeecchhh--ccCChH
Confidence 7777766655566778889999876665 555554
No 72
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=60.08 E-value=28 Score=32.86 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=41.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+.-..|. .|..|+.-+-+|.-|...|+|..|...|+.++ ..|.|++.
T Consensus 299 ~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~--~~~g~~~~ 351 (405)
T TIGR03449 299 VYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVAD--GETGLLVD 351 (405)
T ss_pred HHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhcc--CCceEECC
Confidence 5678888777665 58889999999999999999999987776653 35566653
No 73
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=57.88 E-value=29 Score=31.88 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred cccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEE
Q psy17284 166 SSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVV 245 (286)
Q Consensus 166 ~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vv 245 (286)
...+++=|+..+|.... +..-...+.+. ..+..++++|.- | -+ ..+.++++..+ +.+ +|.
T Consensus 189 ~~i~~~G~~~~~K~~~~-----li~a~~~l~~~-~~~~~l~ivG~g-~----~~---~~~~~~~~~~~----~~~--~v~ 248 (367)
T cd05844 189 PRILFVGRFVEKKGPLL-----LLEAFARLARR-VPEVRLVIIGDG-P----LL---AALEALARALG----LGG--RVT 248 (367)
T ss_pred cEEEEEEeeccccChHH-----HHHHHHHHHHh-CCCeEEEEEeCc-h----HH---HHHHHHHHHcC----CCC--eEE
Confidence 35566778888888764 33333333211 235788888851 1 11 23333444321 122 588
Q ss_pred EEcCCChhhhhhhcccccccccCCCCC----CCccCcc
Q psy17284 246 FLENYRVTLAELIIPAADLSEQISTAG----TEASGTG 279 (286)
Q Consensus 246 fl~nY~~~~a~~l~~~~Dv~~~~p~~~----~EAsGTs 279 (286)
|+...+-..-..+++.+|+....+... .|+.|++
T Consensus 249 ~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~ 286 (367)
T cd05844 249 FLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVV 286 (367)
T ss_pred ECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchH
Confidence 888876666667889999987655432 3555543
No 74
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=56.89 E-value=13 Score=33.22 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=42.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCH
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTV 65 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~ 65 (286)
++..||+.-..|.. |..|++-+-+|..|...|+|..|...|+... ++.++.....
T Consensus 278 ~~~~adv~v~ps~~--e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~---~~~~~~~~~~ 332 (375)
T cd03821 278 ALADADLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY---GCGWVVDDDV 332 (375)
T ss_pred HHhhCCEEEecccc--CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc---CceEEeCCCh
Confidence 45678888777765 9999999999999999999998887776653 5555554443
No 75
>PRK10307 putative glycosyl transferase; Provisional
Probab=56.82 E-value=26 Score=33.42 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++=|+.++|.... +..-.+++.+ ..+..+++.|.- |. + ..+.+.++..+ +. +
T Consensus 228 ~~~~i~~~G~l~~~kg~~~-----li~a~~~l~~--~~~~~l~ivG~g-~~----~---~~l~~~~~~~~----l~---~ 285 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLEL-----VIDAARRLRD--RPDLIFVICGQG-GG----K---ARLEKMAQCRG----LP---N 285 (412)
T ss_pred CCEEEEEcCccccccCHHH-----HHHHHHHhcc--CCCeEEEEECCC-hh----H---HHHHHHHHHcC----CC---c
Confidence 3456667788888887764 3222333322 234788888842 21 1 22333333221 11 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccC
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASG 277 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsG 277 (286)
|.|+....-+....++++||+.+..++ .|+.|
T Consensus 286 v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e~~~ 317 (412)
T PRK10307 286 VHFLPLQPYDRLPALLKMADCHLLPQK--AGAAD 317 (412)
T ss_pred eEEeCCCCHHHHHHHHHhcCEeEEeec--cCccc
Confidence 888876666677788999999887554 25544
No 76
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=56.66 E-value=13 Score=34.36 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=52.9
Q ss_pred cccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEE
Q psy17284 166 SSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVV 245 (286)
Q Consensus 166 ~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vv 245 (286)
.+.+++=|+..+|++.. +..-.+++ |..+++.|.-.. ++.++. . . .+ +|.
T Consensus 196 ~~il~~G~~~~~K~~~~-----li~a~~~~------~~~l~ivG~g~~-----~~~l~~-----~-~------~~--~V~ 245 (351)
T cd03804 196 DYYLSVGRLVPYKRIDL-----AIEAFNKL------GKRLVVIGDGPE-----LDRLRA-----K-A------GP--NVT 245 (351)
T ss_pred CEEEEEEcCccccChHH-----HHHHHHHC------CCcEEEEECChh-----HHHHHh-----h-c------CC--CEE
Confidence 35667889999999875 33333332 266888885321 122222 1 1 11 599
Q ss_pred EEcCCChhhhhhhcccccccccCCCCCCCccCccc
Q psy17284 246 FLENYRVTLAELIIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 246 fl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
|+..-+-+-...++.+||+.+..+. |..|++-
T Consensus 246 ~~g~~~~~~~~~~~~~ad~~v~ps~---e~~g~~~ 277 (351)
T cd03804 246 FLGRVSDEELRDLYARARAFLFPAE---EDFGIVP 277 (351)
T ss_pred EecCCCHHHHHHHHHhCCEEEECCc---CCCCchH
Confidence 9998777777889999999997765 6666653
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=56.51 E-value=14 Score=33.50 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++=|+..+|+..+ +..-.+++... ..+.++++.|...+.+ .+-+ ..+.++ ..+ .
T Consensus 178 ~~~~i~~~g~~~~~k~~~~-----l~~~~~~l~~~-~~~~~l~i~G~~~~~~----~~~~----~~~~~~----~~~--~ 237 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDY-----LLEALALLKDR-GIDFRLDIVGDGPLRD----ELEA----LIAELG----LED--R 237 (355)
T ss_pred CCeEEEEEeeeccccCHHH-----HHHHHHHHhhc-CCCeEEEEEECCccHH----HHHH----HHHHcC----CCC--e
Confidence 3455677888888888775 44444444322 2467888888654332 2222 222211 122 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCC
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
|.|....+-.-...++..||+.+..+..
T Consensus 238 v~~~g~~~~~~l~~~~~~adi~l~~s~~ 265 (355)
T cd03799 238 VTLLGAKSQEEVRELLRAADLFVLPSVT 265 (355)
T ss_pred EEECCcCChHHHHHHHHhCCEEEeccee
Confidence 8888777666677788899998887665
No 78
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=56.32 E-value=17 Score=33.92 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=50.6
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHh-hcCC--ccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERT-AKGK--WHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGD 240 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~-~~~~--~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~ 240 (286)
+....+.+=|+.+.|.+.+ +..-...+ ...+ ..+.++++.|. .|. -+.+.+++ +.. .+.+
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~-----li~a~~~l~~~~~~~~~~~~l~i~G~-g~~---~~~~~~~~----~~~----~~~~ 255 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPT-----LVRAFALLVRQLPEGAERLRLVIVGD-GPA---RGACEQMV----RAA----GLAH 255 (374)
T ss_pred CCeEEEEEecCCcccCHHH-----HHHHHHHHHHhCcccccceEEEEecC-Cch---HHHHHHHH----HHc----CCcc
Confidence 3556777889999999875 32222222 2222 23578888884 221 12232232 321 1222
Q ss_pred ceeEEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 241 KLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 241 ~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
.|++..+ ..--..+++++|+....|+ .|..|.+
T Consensus 256 ---~v~~~g~-~~~~~~~~~~adi~v~pS~--~Eg~~~~ 288 (374)
T TIGR03088 256 ---LVWLPGE-RDDVPALMQALDLFVLPSL--AEGISNT 288 (374)
T ss_pred ---eEEEcCC-cCCHHHHHHhcCEEEeccc--cccCchH
Confidence 3444443 2334566789999887765 5766654
No 79
>PHA01633 putative glycosyl transferase group 1
Probab=55.20 E-value=34 Score=33.00 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhh-cCCc--cceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTA-KGKW--HTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~-~~~~--~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
|+.+..+.+-|++++|.+.+ +..-.+++. ..+. ...++++.|. . .+ +. ..+.
T Consensus 146 ~~~~~i~~vGRl~~~KG~~~-----LI~A~~~L~~~~p~~~~~i~l~ivG~--------~----~~----~~----l~l~ 200 (335)
T PHA01633 146 PDTIKFGIVSGLTKRKNMDL-----MLQVFNELNTKYPDIAKKIHFFVISH--------K----QF----TQ----LEVP 200 (335)
T ss_pred CCCeEEEEEeCCccccCHHH-----HHHHHHHHHHhCCCccccEEEEEEcH--------H----HH----HH----cCCC
Confidence 46667788999999999986 333333333 2222 1356666662 1 11 11 1133
Q ss_pred CceeEEEEcCCC---hhhhhhhcccccccccCCCCCCCccCcccc
Q psy17284 240 DKLKVVFLENYR---VTLAELIIPAADLSEQISTAGTEASGTGNM 281 (286)
Q Consensus 240 ~~~~vvfl~nY~---~~~a~~l~~~~Dv~~~~p~~~~EAsGTs~M 281 (286)
+ +|.|+-.++ -+-...+++++|+.+..|+ +|+.|-.-+
T Consensus 201 ~--~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlL 241 (335)
T PHA01633 201 A--NVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVL 241 (335)
T ss_pred C--cEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHH
Confidence 3 577775332 2334567899999998876 588776533
No 80
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=55.00 E-value=15 Score=32.39 Aligned_cols=54 Identities=22% Similarity=0.059 Sum_probs=41.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~ 63 (286)
++..||+--..|.. |..|++-+-+|..|.+.|.|..|..-|+.++ .+|.+++..
T Consensus 260 ~~~~adi~i~ps~~--e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~--~~~g~~~~~ 313 (359)
T cd03808 260 LLAAADVFVLPSYR--EGLPRVLLEAMAMGRPVIATDVPGCREAVID--GVNGFLVPP 313 (359)
T ss_pred HHHhccEEEecCcc--cCcchHHHHHHHcCCCEEEecCCCchhhhhc--CcceEEECC
Confidence 45678887665544 9999999999999999999988888777654 456676654
No 81
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=54.69 E-value=27 Score=31.12 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCce
Q psy17284 163 TSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKL 242 (286)
Q Consensus 163 ~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~ 242 (286)
.+....+++=|+.++|+..+ +..-...+.+ ....+++.|.....+..-+.. . . ..
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~-----li~~~~~l~~---~~~~l~i~G~~~~~~~~~~~~--------~-~------~~-- 243 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDL-----LLEAFKRLPR---GDIELVIVGNGLELEEESYEL--------E-G------DP-- 243 (359)
T ss_pred CCceEEEEEecCccccCHHH-----HHHHHHHHHh---cCcEEEEEcCchhhhHHHHhh--------c-C------CC--
Confidence 44556677889999998775 3333333322 457788888765554432221 1 1 11
Q ss_pred eEEEEcCCChhhhhhhcccccccccCC
Q psy17284 243 KVVFLENYRVTLAELIIPAADLSEQIS 269 (286)
Q Consensus 243 ~vvfl~nY~~~~a~~l~~~~Dv~~~~p 269 (286)
+|.|+..++-.....+++.+|+....+
T Consensus 244 ~v~~~g~~~~~~~~~~~~~ad~~i~ps 270 (359)
T cd03823 244 RVEFLGAYPQEEIDDFYAEIDVLVVPS 270 (359)
T ss_pred eEEEeCCCCHHHHHHHHHhCCEEEEcC
Confidence 588888887777778899999988654
No 82
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=54.50 E-value=14 Score=34.07 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=41.5
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++-+||+....|. |..|....-+|..|...|+|..|...|+.++ .++.+++.
T Consensus 258 ~~~~ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~--~~~G~~~~ 309 (351)
T cd03804 258 LYARARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVID--GVTGILFE 309 (351)
T ss_pred HHHhCCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeC--CCCEEEeC
Confidence 4567898876665 8999999999999999999999988887654 35666663
No 83
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=53.61 E-value=23 Score=35.01 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=38.2
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
+++++|+--..|. .|+.|..-+-+|.-|.+.|+|.-|..-|+.+.
T Consensus 367 ~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~ 411 (475)
T cd03813 367 YLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEG 411 (475)
T ss_pred HHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcC
Confidence 4678898877765 68999999999999999999998888777765
No 84
>PLN02316 synthase/transferase
Probab=53.01 E-value=29 Score=38.52 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=40.5
Q ss_pred cccccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 4 ELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 4 e~iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
..++.+||+-.--|. .|.||-+-|-+|--|.+-|.|.-|-..|...+
T Consensus 914 h~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d 960 (1036)
T PLN02316 914 HLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFD 960 (1036)
T ss_pred HHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhccc
Confidence 367899999887776 79999999999999999999988888776654
No 85
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=52.36 E-value=38 Score=32.87 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=54.5
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeE
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~v 244 (286)
.+..+++=|+.++|.... +..-..++.+. ..+..+++.|.- . .-.++- +..+..+ +.+ +|
T Consensus 222 ~~~il~vGrl~~~Kg~~~-----ll~a~~~l~~~-~~~~~l~ivG~G---~-~~~~l~----~~~~~~~----l~~--~V 281 (406)
T PRK15427 222 PLEIISVARLTEKKGLHV-----AIEACRQLKEQ-GVAFRYRILGIG---P-WERRLR----TLIEQYQ----LED--VV 281 (406)
T ss_pred CeEEEEEeCcchhcCHHH-----HHHHHHHHHhh-CCCEEEEEEECc---h-hHHHHH----HHHHHcC----CCC--eE
Confidence 345677889999999875 33333343321 235778777742 1 112233 3333221 233 57
Q ss_pred EEEcCCChhhhhhhcccccccccCCCCC----CCccCcc
Q psy17284 245 VFLENYRVTLAELIIPAADLSEQISTAG----TEASGTG 279 (286)
Q Consensus 245 vfl~nY~~~~a~~l~~~~Dv~~~~p~~~----~EAsGTs 279 (286)
.|+.-.+-+--..+++.||+....+..+ +|..|..
T Consensus 282 ~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~ 320 (406)
T PRK15427 282 EMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVA 320 (406)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHH
Confidence 7766554445567889999999877653 4655543
No 86
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=51.36 E-value=15 Score=32.38 Aligned_cols=56 Identities=21% Similarity=0.102 Sum_probs=42.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCH
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTV 65 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~ 65 (286)
++-.||+.-.-|.. |..|++-+-+|.-|.+.|+|..|..-|+.+. ..|.+++....
T Consensus 260 ~~~~~d~~i~ps~~--e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~--~~~g~~~~~~~ 315 (353)
T cd03811 260 YLKAADLFVLSSRY--EGFPNVLLEAMALGTPVVATDCPGPREILED--GENGLLVPVGD 315 (353)
T ss_pred HHHhCCEEEeCccc--CCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--CCceEEECCCC
Confidence 44567887766553 8999999999999999999999977776654 45777765443
No 87
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=50.75 E-value=19 Score=32.73 Aligned_cols=35 Identities=26% Similarity=0.130 Sum_probs=24.2
Q ss_pred eEEEEcCCC-hhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 243 KVVFLENYR-VTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 243 ~vvfl~nY~-~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
+|.|+...+ -..-..++..||+.+..+. .|..|.+
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~ 280 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNT 280 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHH
Confidence 477777665 4445567889999988665 5766654
No 88
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.24 E-value=8.2 Score=37.18 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=51.3
Q ss_pred chhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHHHHHHcCCCCCccccCChhHHHHHHHHhcCCCCCCChhh
Q psy17284 28 NMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDE 107 (286)
Q Consensus 28 nMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~~l~~~gy~p~~~~~~np~L~~vlD~i~~G~f~~~d~~~ 107 (286)
-.|..|||--|+-|+||.-|+...+| ++.+.-|+.-+.+..|++--+++.++.|. .+.
T Consensus 264 evk~vl~~K~t~~~y~~r~I~am~av-------------------aea~~NRsL~df~~aL~qY~~el~~D~~i---RsH 321 (421)
T COG5159 264 EVKAVLRNKNTLKHYDDRMIRAMLAV-------------------AEAFGNRSLKDFSDALAQYSDELHQDSFI---RSH 321 (421)
T ss_pred HHHHHHccchhHhhhhhhhHHHHHHH-------------------HHHhCCCcHhhHHHHHHHhhHHhccCHHH---HHH
Confidence 35889999999999999999877664 22344455555567777777777776663 678
Q ss_pred HHHHHHHHhcC
Q psy17284 108 FKDLSDILLKW 118 (286)
Q Consensus 108 f~~Lyd~L~~~ 118 (286)
|+.|||.|+..
T Consensus 322 l~~LYD~LLe~ 332 (421)
T COG5159 322 LQYLYDVLLEK 332 (421)
T ss_pred HHHHHHHHHHh
Confidence 99999999853
No 89
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=47.32 E-value=22 Score=32.13 Aligned_cols=61 Identities=21% Similarity=0.140 Sum_probs=43.9
Q ss_pred cccccccccccccCc----ccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC-CHHHH
Q psy17284 6 IIPAADLSEQISTAG----TEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM-TVDQV 68 (286)
Q Consensus 6 iipa~Dis~qis~ag----~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~-~~~eV 68 (286)
++..||+....|..+ .|..|++-+-+|.-|...|+|..|+.-|+.+. .+|.+++.. +++++
T Consensus 252 ~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~--~~~g~~~~~~~~~~l 317 (355)
T cd03799 252 LLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVED--GETGLLVPPGDPEAL 317 (355)
T ss_pred HHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhC--CCceEEeCCCCHHHH
Confidence 345678877665542 37888888999999999999999988777764 346777654 44443
No 90
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=45.86 E-value=21 Score=32.13 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=46.2
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHH
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQV 68 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV 68 (286)
++.++|+....|. ..|..|.+-+=+|--|...|+|.-|..-|+.+. +.|.+++.. .+++
T Consensus 240 ~~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~--~~~g~l~~~-~~~l 298 (335)
T cd03802 240 LLGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED--GVTGFLVDS-VEEL 298 (335)
T ss_pred HHHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeC--CCcEEEeCC-HHHH
Confidence 4667888776554 468999999999999999999999988887764 458888876 4444
No 91
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=44.99 E-value=23 Score=32.99 Aligned_cols=53 Identities=23% Similarity=0.183 Sum_probs=42.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.++|+--.-|. .|..|..-+=+|..|.+.|+|.-|..-|+.++ .++.++|.
T Consensus 269 ~~~~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~--~~~g~~~~ 321 (374)
T TIGR03088 269 LMQALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQH--GVTGALVP 321 (374)
T ss_pred HHHhcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcC--CCceEEeC
Confidence 4678898766665 69999999999999999999998888887764 45666664
No 92
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=43.25 E-value=55 Score=31.07 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=39.2
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+....|. .|..|.+-+-+|.-|...|+|..|..-|+.+. .+|.+++.
T Consensus 297 ~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~--~~~G~lv~ 349 (396)
T cd03818 297 LLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITD--GENGLLVD 349 (396)
T ss_pred HHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhccc--CCceEEcC
Confidence 3457788776665 46677778899999999999998887777653 35666653
No 93
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=43.11 E-value=2.1e+02 Score=30.00 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCceeEEEEcCC--------ChhhhhhhcccccccccCCCC
Q psy17284 239 GDKLKVVFLENY--------RVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 239 ~~~~~vvfl~nY--------~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
.+++||||.|.| ++. -..++.|||+....|+.
T Consensus 445 ~drVkvif~P~~L~~~~~~~g~~-y~E~~~g~dl~v~PS~y 484 (590)
T cd03793 445 EDRVKVVFHPEFLSSTNPLLGLD-YEEFVRGCHLGVFPSYY 484 (590)
T ss_pred CCeEEEEEcccccCCCCCcCCcc-hHHHhhhceEEEecccc
Confidence 578999999998 443 34568999998776643
No 94
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=43.10 E-value=25 Score=31.24 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=39.5
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++..||+--..|.. |..|++-+-+|.-|.+.|+|..|..-|+.++ +.+++.
T Consensus 265 ~~~~adi~v~ps~~--e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~----~g~~~~ 315 (365)
T cd03807 265 LLNALDVFVLSSLS--EGFPNVLLEAMACGLPVVATDVGDNAELVGD----TGFLVP 315 (365)
T ss_pred HHHhCCEEEeCCcc--ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc----CCEEeC
Confidence 45678887766665 8899999999999999999998887776643 555554
No 95
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=42.38 E-value=32 Score=32.11 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=42.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHH
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQV 68 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV 68 (286)
++-+||+....|. .|.-|.+-+-+|..|...|+|.-|...|+... ..|.+++....+++
T Consensus 296 ~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~--~~~g~~~~~~~~~~ 354 (392)
T cd03805 296 LLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVD--GETGFLCEPTPEEF 354 (392)
T ss_pred HHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhcc--CCceEEeCCCHHHH
Confidence 4567788766554 58889999999999999999988877776543 34666665444433
No 96
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=41.40 E-value=19 Score=33.57 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=42.1
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+-...|. .|..|.+.+-+|.-|.+.|+|..|...|+.+. .+|.+++-
T Consensus 277 ~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~--~~~G~~~~ 329 (388)
T TIGR02149 277 LLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVD--GETGFLVP 329 (388)
T ss_pred HHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC--CCceEEcC
Confidence 4567888776664 58899999999999999999999988887764 45666664
No 97
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=40.84 E-value=31 Score=32.95 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=40.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEe
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiF 61 (286)
++.+||+--.-|.. .|.-|..-+=+|.-|..+|+|.-|...|+.++ ++|.|++
T Consensus 273 ~~~~aDv~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~--~~~G~~l 325 (380)
T PRK15484 273 YYPLADLVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLE--GITGYHL 325 (380)
T ss_pred HHHhCCEEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhccc--CCceEEE
Confidence 46678887755532 37778888889999999999999998888764 4566643
No 98
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=40.68 E-value=73 Score=27.86 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=49.2
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+....+++=|+...|+... +..-.+.+.+ .....++++.|.....+. + .+..+..+ +.. +
T Consensus 177 ~~~~i~~~g~~~~~K~~~~-----l~~~~~~l~~-~~~~~~l~i~G~~~~~~~----~----~~~~~~~~----~~~--~ 236 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDL-----LIEAWAKIAK-KHPDWKLRIVGDGPEREA----L----EALIKELG----LED--R 236 (348)
T ss_pred CCcEEEEEEeeccccCHHH-----HHHHHHHHHh-cCCCeEEEEEeCCCCHHH----H----HHHHHHcC----CCC--e
Confidence 3455667778888888774 3333333322 233568888886543221 1 12222222 122 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccCc
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASGT 278 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGT 278 (286)
|.|... .+-...++..||+-+..+.. |..|+
T Consensus 237 v~~~g~--~~~~~~~~~~ad~~i~ps~~--e~~~~ 267 (348)
T cd03820 237 VILLGF--TKNIEEYYAKASIFVLTSRF--EGFPM 267 (348)
T ss_pred EEEcCC--cchHHHHHHhCCEEEeCccc--cccCH
Confidence 555554 44556677889998876543 54443
No 99
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.25 E-value=51 Score=29.91 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=43.1
Q ss_pred ccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEE
Q psy17284 167 SSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVF 246 (286)
Q Consensus 167 ~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvf 246 (286)
+.+.+=|+.++|+..+ +..-...+. . ...+++.|.........+.+.+ ... ..+ +|.|
T Consensus 195 ~i~~~G~~~~~Kg~~~-----li~a~~~l~---~-~~~l~ivG~~~~~~~~~~~~~~----~~~-------~~~--~V~~ 252 (363)
T cd04955 195 YYLLVGRIVPENNIDD-----LIEAFSKSN---S-GKKLVIVGNADHNTPYGKLLKE----KAA-------ADP--RIIF 252 (363)
T ss_pred EEEEEecccccCCHHH-----HHHHHHhhc---c-CceEEEEcCCCCcchHHHHHHH----HhC-------CCC--cEEE
Confidence 3456778888888764 333232321 1 5678888877544433322221 111 122 4778
Q ss_pred EcCCChhhhhhhcccccccccCCC
Q psy17284 247 LENYRVTLAELIIPAADLSEQIST 270 (286)
Q Consensus 247 l~nY~~~~a~~l~~~~Dv~~~~p~ 270 (286)
+.-..=.-...++..+|+....|.
T Consensus 253 ~g~~~~~~~~~~~~~ad~~v~ps~ 276 (363)
T cd04955 253 VGPIYDQELLELLRYAALFYLHGH 276 (363)
T ss_pred ccccChHHHHHHHHhCCEEEeCCc
Confidence 765433334455566777765544
No 100
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=39.47 E-value=27 Score=31.24 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=41.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 64 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~ 64 (286)
++..||+-...|. .|..|++-+-+|.-|...|+|..|+.-|+.++ .+|.+++...
T Consensus 275 ~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~--~~~g~~~~~~ 329 (374)
T cd03817 275 YYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVAD--GENGFLFPPG 329 (374)
T ss_pred HHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheec--CceeEEeCCC
Confidence 4456788766554 57788888888999999999999998787764 3677777544
No 101
>PLN00142 sucrose synthase
Probab=39.06 E-value=1e+02 Score=33.46 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=40.1
Q ss_pred ccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 9 AADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 9 a~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++|+--+-|. .|+.|..-+=+|--|..+|+|..|..-|+.++ .+|.|++.
T Consensus 666 aaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~d--G~tG~LV~ 715 (815)
T PLN00142 666 TKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVD--GVSGFHID 715 (815)
T ss_pred hCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--CCcEEEeC
Confidence 4577666554 79999999999999999999999998887765 45666654
No 102
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.01 E-value=38 Score=31.12 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=41.1
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+.-..|+ .|..|.+-+-+|..|.+.|+|..|..-|+.++ ..|.|++-
T Consensus 267 ~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~--~~~G~~~~ 319 (371)
T cd04962 267 LLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKH--GETGFLVD 319 (371)
T ss_pred HHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcC--CCceEEcC
Confidence 4567888877775 79999999999999999999988877666653 34666653
No 103
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=37.85 E-value=32 Score=31.23 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=42.0
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+-...|. .|..|.+-+-+|..|.+.|+|..|...|+.+. .++.|++.
T Consensus 261 ~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~--~~~g~~~~ 313 (365)
T cd03825 261 IYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDH--GVTGYLAK 313 (365)
T ss_pred HHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeC--CCceEEeC
Confidence 4667888776555 69999999999999999999999988887754 34666654
No 104
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=37.15 E-value=1.2e+02 Score=27.15 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=32.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++..||+--.-|+...+.-|..-+-+|.-|...|.|..|. .|.... ..+.+++.
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~--~~~g~~~~ 317 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLD--GGTGLLVP 317 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeee--CCCcEEEc
Confidence 4566777655444332244444556788999999998887 443322 34555554
No 105
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=36.35 E-value=83 Score=29.77 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=51.8
Q ss_pred ccceEEEEeecCCCCCHHHHH-HHHHHHHHHHHHcCCcCC---CCceeEEEEcCCChhhhhhh-----------------
Q psy17284 200 WHTRTIMIGGKAAPGYYTAKK-IIKLICSVARVVNNDPDV---GDKLKVVFLENYRVTLAELI----------------- 258 (286)
Q Consensus 200 ~~p~~~i~~GKa~P~d~~~k~-~i~~i~~~~~~~~~d~~~---~~~~~vvfl~nY~~~~a~~l----------------- 258 (286)
.+|..+|.| --|+....|-+ .+.+|..+......||.+ -++..++|||..|..=.+..
T Consensus 41 ~kp~v~i~~-~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~~lL~~~~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~ 119 (293)
T cd06226 41 PKPVFFIMG-AIHAREYTTAELVLRFAEDLLEGYGTDADATWLLDYHEIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSN 119 (293)
T ss_pred CCCEEEEEC-CcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhcCeEEEEecccCCcceeeccCcceeccCCCCCCCC
Confidence 466666666 57888877765 456777776655556643 34578999988766543321
Q ss_pred ----cccccccccCCCCCCCccCcc
Q psy17284 259 ----IPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 259 ----~~~~Dv~~~~p~~~~EAsGTs 279 (286)
..|+|+--|-|+ .|+..|+|
T Consensus 120 ~~~n~~GVDLNRNf~~-~w~~~~~~ 143 (293)
T cd06226 120 CSGSSYGVDLNRNYSF-GWGGAGAS 143 (293)
T ss_pred ccccccccccccCCCC-cCCcCCCC
Confidence 259999999986 67666654
No 106
>PHA01630 putative group 1 glycosyl transferase
Probab=35.72 E-value=26 Score=33.33 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=45.2
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~ 63 (286)
++.+||+.-..|. .|.-|..-.=+|.-|...|+|..|..-|+.++ ++|.|++..
T Consensus 206 ~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~--~~ng~lv~~ 259 (331)
T PHA01630 206 LFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLS--NLDVYWIKS 259 (331)
T ss_pred HHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccC--CCceEEeee
Confidence 4678999988887 49999999999999999999999998887664 678888643
No 107
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.68 E-value=69 Score=28.64 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=44.3
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeE
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~v 244 (286)
....+++=|+..+|+... +..-.+.+... .+..+++.|.. |.. ..++ . . .. +|
T Consensus 197 ~~~i~~~G~~~~~k~~~~-----~i~~~~~l~~~--~~~~l~i~G~~-~~~----~~~~------~-~------~~--~v 249 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEA-----LLDADLPLRRR--PPVRLVIVGDG-PAR----ARLE------A-R------YP--NV 249 (364)
T ss_pred CeEEEEEeccccccCHHH-----HHHHHHHhhhc--CCceEEEEeCC-chH----HHHh------c-c------CC--cE
Confidence 344566777777777653 22222232221 35677777742 211 1111 1 1 11 47
Q ss_pred EEEcCCChhhhhhhcccccccccCCC
Q psy17284 245 VFLENYRVTLAELIIPAADLSEQIST 270 (286)
Q Consensus 245 vfl~nY~~~~a~~l~~~~Dv~~~~p~ 270 (286)
.|+.-........++..||+.+..+.
T Consensus 250 ~~~g~~~~~~~~~~~~~~d~~l~~s~ 275 (364)
T cd03814 250 HFLGFLDGEELAAAYASADVFVFPSR 275 (364)
T ss_pred EEEeccCHHHHHHHHHhCCEEEECcc
Confidence 88876666777788899999886543
No 108
>KOG4409|consensus
Probab=34.89 E-value=27 Score=34.19 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHhhccCCCCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhc-CCccceEEEEeecCCCCCHHHHHHHHHH-H
Q psy17284 149 FMEHFRGSSHRDISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAK-GKWHTRTIMIGGKAAPGYYTAKKIIKLI-C 226 (286)
Q Consensus 149 i~eY~~~~tG~~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~-~~~~p~~~i~~GKa~P~d~~~k~~i~~i-~ 226 (286)
+.+|+-..-...=+.+..|-.--.|.-.=|||.+ +|+.. ++..|++||+|.+.=-.+..|.++-+.. .
T Consensus 261 l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~----------~r~~~l~~~~pv~fiyG~~dWmD~~~g~~~~~~~~~ 330 (365)
T KOG4409|consen 261 LHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMI----------QRLRELKKDVPVTFIYGDRDWMDKNAGLEVTKSLMK 330 (365)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHH----------HHHHhhccCCCEEEEecCcccccchhHHHHHHHhhc
Confidence 4555555332222334444444566666678864 44443 4578999999999999999999998875 2
Q ss_pred HHHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccc
Q psy17284 227 SVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAA 262 (286)
Q Consensus 227 ~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~ 262 (286)
+.++ .-++.+-..=||+.|++. ..+.++..|
T Consensus 331 ~~~~----~~~v~~aGHhvylDnp~~-Fn~~v~~~~ 361 (365)
T KOG4409|consen 331 EYVE----IIIVPGAGHHVYLDNPEF-FNQIVLEEC 361 (365)
T ss_pred ccce----EEEecCCCceeecCCHHH-HHHHHHHHH
Confidence 2222 333444456788888765 334444333
No 109
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=34.72 E-value=1.1e+02 Score=33.17 Aligned_cols=48 Identities=23% Similarity=0.170 Sum_probs=38.6
Q ss_pred cccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEe
Q psy17284 10 ADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 10 ~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiF 61 (286)
+||--+-|. .|+.|-.-+=+|--|..+|+|..|..-|+.++ ..|.|++
T Consensus 644 adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d--g~tGfLV 691 (784)
T TIGR02470 644 KGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD--GVSGFHI 691 (784)
T ss_pred CcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--CCcEEEe
Confidence 356655554 79999999999999999999999998887764 4566665
No 110
>PLN02275 transferase, transferring glycosyl groups
Probab=34.71 E-value=36 Score=32.41 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred ccccccccccc--ccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHH
Q psy17284 6 IIPAADLSEQI--STAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQV 68 (286)
Q Consensus 6 iipa~Dis~qi--s~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV 68 (286)
++.+||+.--. |.. .|.-|..-+-+|.-|...|+|..|..-|+.++ .+|.+++. .+++.
T Consensus 303 ~l~~aDv~v~~~~s~~-~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~--g~~G~lv~-~~~~l 363 (371)
T PLN02275 303 LLGSADLGVSLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIGELVKD--GKNGLLFS-SSSEL 363 (371)
T ss_pred HHHhCCEEEEeccccc-cccccHHHHHHHHCCCCEEEecCCChHHHccC--CCCeEEEC-CHHHH
Confidence 35677876421 222 25566677889999999999999988887765 67899987 44443
No 111
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=34.54 E-value=95 Score=29.62 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=45.9
Q ss_pred cchhhHHhhHHHHH-HhhcCCccceEEEEeec--CCC---CCHHHHHHHHHHHHHHH-HHcCCcCCCCceeEEEEcCC
Q psy17284 180 QKFAALITIFLIEE-RTAKGKWHTRTIMIGGK--AAP---GYYTAKKIIKLICSVAR-VVNNDPDVGDKLKVVFLENY 250 (286)
Q Consensus 180 ~~l~~l~~i~~~~~-~~~~~~~~p~~~i~~GK--a~P---~d~~~k~~i~~i~~~~~-~~~~d~~~~~~~~vvfl~nY 250 (286)
..|.+|.-+|.-.+ ..+ ....|..|||-|- .+| +........+.+.+++. .+.+-|.+...-+.||||.=
T Consensus 42 ~tl~~L~kvf~~y~~~~~-~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGp 118 (291)
T PTZ00235 42 YTFEVLDKMLSLYVNTYP-ENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGI 118 (291)
T ss_pred HHHHHHHHHHHHhhccCc-ccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCC
Confidence 34555555554221 111 1356999998885 333 33344556778888887 57788999999999999983
No 112
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=33.82 E-value=70 Score=30.29 Aligned_cols=80 Identities=8% Similarity=0.046 Sum_probs=51.7
Q ss_pred CccceEEEEeecCCCCCHHHHH-HHHHHHHHHHHHcCCcCCC---CceeEEEEcCCChhhhh------------------
Q psy17284 199 KWHTRTIMIGGKAAPGYYTAKK-IIKLICSVARVVNNDPDVG---DKLKVVFLENYRVTLAE------------------ 256 (286)
Q Consensus 199 ~~~p~~~i~~GKa~P~d~~~k~-~i~~i~~~~~~~~~d~~~~---~~~~vvfl~nY~~~~a~------------------ 256 (286)
..+|+++|.||- |+....+-+ ++.+|..+.....+||.+. ++..++|+|..|.+=-+
T Consensus 51 ~~k~~v~i~~gi-HarE~i~~~~~l~~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~ 129 (300)
T cd06246 51 TAKNAIWIDCGI-HAREWISPAFCLWFVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYAN 129 (300)
T ss_pred CCCCeEEEeccc-CccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCC
Confidence 346888888884 998876644 4455666655555555433 34678888876654211
Q ss_pred hhcccccccccCCCCCCCccCccc
Q psy17284 257 LIIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 257 ~l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
--..|+|+--|-|. .|+..|+|.
T Consensus 130 ~~~~GVDLNRNf~~-~w~~~g~s~ 152 (300)
T cd06246 130 SHCIGTDLNRNFDA-KWCCEGASS 152 (300)
T ss_pred CCccCccccccccc-ccCCCCCCC
Confidence 12579999999995 576666653
No 113
>KOG3111|consensus
Probab=33.25 E-value=42 Score=30.43 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHcCCCCCccccCChhHHHHHHHHhcCCCCCCChhhHHHHHHHHhcC---CCCeeec--cCCchHHHHHH
Q psy17284 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKW---DRPGAIP--LKGPVPTTQLV 136 (286)
Q Consensus 62 G~~~~eV~~l~~~gy~p~~~~~~np~L~~vlD~i~~G~f~~~d~~~f~~Lyd~L~~~---D~ylvla--Y~d~~~W~k~~ 136 (286)
+.-.+|+.++...|-+ |++-| +-+|.|-|+ -.--..+.++|+++ |.||-.. -.+|++|...+
T Consensus 17 anL~~e~~~~l~~Gad---wlHlD---------VMDg~FVpN-iT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~ 83 (224)
T KOG3111|consen 17 ANLAAECKKMLDAGAD---WLHLD---------VMDGHFVPN-ITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQM 83 (224)
T ss_pred HHHHHHHHHHHHcCCC---eEEEe---------eecccccCC-cccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHH
Confidence 3445777777777643 44432 235777653 23336678888765 7787777 88999999886
Q ss_pred HH-HHhcCCcchh-------HHHHHhh---ccCCCCCCCCccccc
Q psy17284 137 LR-WASSGRWPVT-------FMEHFRG---SSHRDISTSTSSSGQ 170 (286)
Q Consensus 137 i~-IA~~g~FSSD-------i~eY~~~---~tG~~~~~~~~~~~~ 170 (286)
.. =|..--|-.. +.+++++ .-|..|.|.+..+.-
T Consensus 84 a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~ 128 (224)
T KOG3111|consen 84 AKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDL 128 (224)
T ss_pred HhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHH
Confidence 65 2222233332 5566666 447888998876543
No 114
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=32.73 E-value=30 Score=30.63 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=39.4
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEe
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiF 61 (286)
++-.||+....|.. |..|+.-+-+|.-|...|+|..|+.-|+.++ ..+.|++
T Consensus 275 ~~~~ad~~i~~~~~--~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~--~~~g~~~ 326 (377)
T cd03798 275 YYAAADVFVLPSLR--EGFGLVLLEAMACGLPVVATDVGGIPEIITD--GENGLLV 326 (377)
T ss_pred HHHhcCeeecchhh--ccCChHHHHHHhcCCCEEEecCCChHHHhcC--CcceeEE
Confidence 34567887766665 8899999999999999999999988776653 2333444
No 115
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=32.61 E-value=1.2e+02 Score=29.64 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.1
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh-hcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE-MGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~-vg~eN~fiFG 62 (286)
++.++|+--.-|. .|..|..-+=+|.-|...|+|..|..-|+.++ ...+|.|+|.
T Consensus 328 ~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~ 383 (465)
T PLN02871 328 AYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYT 383 (465)
T ss_pred HHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeC
Confidence 5667888766554 68888888899999999999998887777653 1135666664
No 116
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=32.59 E-value=39 Score=32.23 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=37.9
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhh
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAE 51 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e 51 (286)
++.++|+-...|. .|..|.+-+=+|..|...|+|.-|..-|+.+
T Consensus 266 ~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~ 309 (398)
T cd03796 266 VLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLP 309 (398)
T ss_pred HHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhhee
Confidence 5678999887775 6999999999999999999999998877765
No 117
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=32.53 E-value=1.2e+02 Score=26.52 Aligned_cols=53 Identities=15% Similarity=-0.025 Sum_probs=35.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceeh-hhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVE-MAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvE-i~e~vg~eN~fiFG 62 (286)
++-.||+--.-|. .|..|++-+-+|..|...|+|..|...+ +.+. .++.+++-
T Consensus 249 ~~~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~--~~~g~~~~ 302 (348)
T cd03820 249 YYAKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPSEIIED--GVNGLLVP 302 (348)
T ss_pred HHHhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchHhhhcc--CcceEEeC
Confidence 4456777665554 3888999999999999999986555433 2221 23666653
No 118
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=32.16 E-value=3.3e+02 Score=27.73 Aligned_cols=103 Identities=11% Similarity=-0.079 Sum_probs=63.7
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHHhhcCCc--cceEEEEeecC-CCCCHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEERTAKGKW--HTRTIMIGGKA-APGYYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~--~p~~~i~~GKa-~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
.-+++.|=|+..=|--.. .+.-+.+.|+..+. ..+++|..|-+ -..-..-+++.+.+.+++..||..=...+.
T Consensus 285 ~kiIl~VDRLDy~KGI~~----kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~ 360 (487)
T TIGR02398 285 VKLILSAERVDYTKGILE----KLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGW 360 (487)
T ss_pred ceEEEEecccccccCHHH----HHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 445666777776666443 22223333343332 23556554444 333344477889999999999875333344
Q ss_pred eeEEEEcCC-ChhhhhhhcccccccccCCCC
Q psy17284 242 LKVVFLENY-RVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 242 ~~vvfl~nY-~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
..|+|+..+ .-+.--.+...|||.+-||.+
T Consensus 361 ~pv~~~~~~v~~~el~alYr~ADV~lvT~lr 391 (487)
T TIGR02398 361 TPLQFFTRSLPYEEVSAWFAMADVMWITPLR 391 (487)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCEEEECccc
Confidence 567777764 555556688999999999987
No 119
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=32.01 E-value=90 Score=28.00 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=51.3
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
.....+++=|+.+.|++.+ +....++ ....+++.|.....+...+ .+.+... +.+ +
T Consensus 170 ~~~~i~~~Gr~~~~Kg~~~-----li~~~~~------~~~~l~i~G~~~~~~~~~~----~~~~~~~-------~~~--~ 225 (335)
T cd03802 170 KGDYLLFLGRISPEKGPHL-----AIRAARR------AGIPLKLAGPVSDPDYFYR----EIAPELL-------DGP--D 225 (335)
T ss_pred CCCEEEEEEeeccccCHHH-----HHHHHHh------cCCeEEEEeCCCCHHHHHH----HHHHhcc-------cCC--c
Confidence 3445667778889999875 2222211 2367888887643322211 1111111 122 5
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccCcc
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
|.|+..-+=.-...+++++|+.++.+. ..|.+|.+
T Consensus 226 v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~ 260 (335)
T cd03802 226 IEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLV 260 (335)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchH
Confidence 888876543344567889999997654 34666654
No 120
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=31.87 E-value=91 Score=29.22 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred CccceEEEEeecCCCCCHHHHH-HHHHHHHHHHHHcCCcCC---CCceeEEEEcCCChhhhh------------------
Q psy17284 199 KWHTRTIMIGGKAAPGYYTAKK-IIKLICSVARVVNNDPDV---GDKLKVVFLENYRVTLAE------------------ 256 (286)
Q Consensus 199 ~~~p~~~i~~GKa~P~d~~~k~-~i~~i~~~~~~~~~d~~~---~~~~~vvfl~nY~~~~a~------------------ 256 (286)
..+|+.+|.|| -|+....|-. ++.++..+.....+||.+ -++..+++||--|..=.+
T Consensus 52 ~~kp~i~i~~~-iH~~E~~g~~~~l~~i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~ 130 (295)
T cd03859 52 ENKPEVLYTST-HHAREWLSLEMAIYLMHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDN 130 (295)
T ss_pred CCCCEEEEECC-cCccchhhHHHHHHHHHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCC
Confidence 35688888888 6999988855 456666676655555543 445678888875443222
Q ss_pred ----hhcccccccccCCCC
Q psy17284 257 ----LIIPAADLSEQISTA 271 (286)
Q Consensus 257 ----~l~~~~Dv~~~~p~~ 271 (286)
.-..|+|+--|-|..
T Consensus 131 ~~~~~~~~GvDLNRNf~~~ 149 (295)
T cd03859 131 SGDISSSDGVDLNRNYGYK 149 (295)
T ss_pred CCCcCcceeecCCCCCCcc
Confidence 134699999988854
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=30.75 E-value=61 Score=25.30 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=40.0
Q ss_pred CcccccccCCCCccccchhhHHhhHH-HHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFL-IEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~-~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
.++.+..-+++.+|.... +.. -.+++.+. ..+.++++.|...+ + ++ ++ . -+ +
T Consensus 2 ~~~i~~~g~~~~~k~~~~-----li~~~~~~l~~~-~p~~~l~i~G~~~~------~-l~---~~-~-~~---------~ 54 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEE-----LIEAALERLKEK-HPDIELIIIGNGPD------E-LK---RL-R-RP---------N 54 (135)
T ss_dssp -EEEE--S-SSGGGTHHH-----HHH-HHHHHHHH-STTEEEEEECESS-------H-HC---CH-H-HC---------T
T ss_pred cccccccccccccccccc-----hhhhHHHHHHHH-CcCEEEEEEeCCHH------H-HH---Hh-c-CC---------C
Confidence 356677778888888664 333 33333321 12488888888333 1 22 22 1 11 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCC
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTE 274 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~E 274 (286)
|.|++.. +-...++++||+-+. |.+..|
T Consensus 55 v~~~g~~--~e~~~~l~~~dv~l~-p~~~~~ 82 (135)
T PF13692_consen 55 VRFHGFV--EELPEILAAADVGLI-PSRFNE 82 (135)
T ss_dssp EEEE-S---HHHHHHHHC-SEEEE--BSS-S
T ss_pred EEEcCCH--HHHHHHHHhCCEEEE-EeeCCC
Confidence 8998887 345566888999995 444333
No 122
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=30.60 E-value=1.5e+02 Score=33.33 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=36.7
Q ss_pred ccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEe
Q psy17284 11 DLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61 (286)
Q Consensus 11 Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiF 61 (286)
||--+-|. .|.-|..-+=+|.-|...|+|..|...|+.+. .+|.+++
T Consensus 573 DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~--g~nGlLV 619 (1050)
T TIGR02468 573 GVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV--LDNGLLV 619 (1050)
T ss_pred CeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc--CCcEEEE
Confidence 45444343 69999999999999999999999998888764 4566665
No 123
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=30.33 E-value=3.2e+02 Score=22.64 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCC---CCcee---EEEEcCCChhhhhhh
Q psy17284 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDV---GDKLK---VVFLENYRVTLAELI 258 (286)
Q Consensus 185 l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~---~~~~~---vvfl~nY~~~~a~~l 258 (286)
|.|+.+.+.|| .|+..|. |.+..+|..-|..-++++.||-+=.+ .+-.- |+=-++-.++ .+.+
T Consensus 16 lDL~vRLlARL-----YP~l~il-----p~g~as~~~a~~l~~LA~sINp~I~i~r~G~s~~~clV~G~trp~~s-c~~f 84 (131)
T PF14459_consen 16 LDLVVRLLARL-----YPKLCIL-----PSGEASSFQAQNLQSLARSINPRIEIRRSGSSPMHCLVIGSTRPKIS-CPRF 84 (131)
T ss_pred HHHHHHHHHHh-----cceEEEe-----ecchhHHHHHHHHHHHHHhcCCCeEEEecCCCceEEEEecCCCCCcc-cceE
Confidence 45566666665 5777775 78899999999999999999876555 22221 2224666776 7778
Q ss_pred cccccccc
Q psy17284 259 IPAADLSE 266 (286)
Q Consensus 259 ~~~~Dv~~ 266 (286)
.=|+|=|.
T Consensus 85 FiGSdGW~ 92 (131)
T PF14459_consen 85 FIGSDGWI 92 (131)
T ss_pred EEcCCcee
Confidence 88999997
No 124
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=30.25 E-value=59 Score=29.79 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred cccccccccccccC---c-ccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTA---G-TEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~a---g-~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.++|+--..|.. | .|+.|+.-+=+|.=|...|+|..|.+.|+.++ .+|.++|.
T Consensus 261 ~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~--~~~g~~~~ 319 (367)
T cd05844 261 LMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVED--GETGLLVP 319 (367)
T ss_pred HHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheec--CCeeEEEC
Confidence 35677876554433 2 58899999999999999999999988887653 46777774
No 125
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=30.21 E-value=76 Score=31.22 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=57.4
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
....|.|+|=.-.|+-+-.-+.++|....++.+.. .-.|+ |-||-|-.=+..-+.|.+.+.++ .+++ |
T Consensus 236 Qv~~d~Qvr~h~~f~s~r~fi~~ilaSFa~hapa~----t~lii--khHpmdrg~idy~~~i~~~~~q~----~v~~--R 303 (403)
T COG3562 236 QVYEDSQVRIHCDFRSVRFFITEILASFAEHAPAG----TNLII--KHHPMDRGFIDYPRDIKRRFVQY----EVKG--R 303 (403)
T ss_pred heeecceeEEeccchhHHHHHHHHHHHHHhhCccc----cceEE--EeccccccchhhHHHHHHHHHHh----ccCc--e
Confidence 45567888877677777666778887777765332 22333 89999988899999999998865 4777 9
Q ss_pred EEEEcCCChh
Q psy17284 244 VVFLENYRVT 253 (286)
Q Consensus 244 vvfl~nY~~~ 253 (286)
|.|+.|-.+.
T Consensus 304 vlYvhd~~lp 313 (403)
T COG3562 304 VLYVHDVPLP 313 (403)
T ss_pred EEEecCCCch
Confidence 9999986653
No 126
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=30.05 E-value=1.4e+02 Score=29.09 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.9
Q ss_pred ccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 11 DLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 11 Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
|+--.-|. .|.-|..-+-+|.-|...|+|.-|...|+.++ .+|.|++-
T Consensus 342 Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~--~~~G~lv~ 389 (439)
T TIGR02472 342 GIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIAN--CRNGLLVD 389 (439)
T ss_pred CEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcC--CCcEEEeC
Confidence 56544444 69999999999999999999998888777753 45667663
No 127
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=30.04 E-value=1.1e+02 Score=27.26 Aligned_cols=43 Identities=21% Similarity=0.048 Sum_probs=33.8
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhh
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMA 50 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~ 50 (286)
++-+||+....|+ .|..|.+-+-+|.-|.+.|+|.-|+..|+.
T Consensus 269 ~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 311 (365)
T cd03809 269 LYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVA 311 (365)
T ss_pred HHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCcccee
Confidence 4567888776554 488888889999999999999888776654
No 128
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=30.03 E-value=1.5e+02 Score=27.09 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=45.6
Q ss_pred CccceEEEEeecCCCCCHHHHHH-HHHHHHHHHHHcCCcCCC---CceeEEEEcCCChhhh-------------hhhccc
Q psy17284 199 KWHTRTIMIGGKAAPGYYTAKKI-IKLICSVARVVNNDPDVG---DKLKVVFLENYRVTLA-------------ELIIPA 261 (286)
Q Consensus 199 ~~~p~~~i~~GKa~P~d~~~k~~-i~~i~~~~~~~~~d~~~~---~~~~vvfl~nY~~~~a-------------~~l~~~ 261 (286)
...|+++|.| --||....|-++ +.++..+.... +||.+. ++..++++|-.|..=. |.-..|
T Consensus 44 ~~k~~v~i~~-~~Hg~E~~g~~~~l~~~~~L~~~~-~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~G 121 (279)
T PF00246_consen 44 PGKPTVLIIA-GIHGNEWIGSEALLYLIEELLSGY-DDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANG 121 (279)
T ss_dssp TTSEEEEEEE--SSTT-THHHHHHHHHHHHHHHHT-TSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS
T ss_pred ccccceEEEe-cccccccCchHHHHHHHHHhhccc-cchhhhhhcccceEEEEeeecccceeeeeecccccccccccccc
Confidence 3456655555 579998888764 44555555532 355543 4568999998886333 334479
Q ss_pred ccccccCCCCCCCccCcc
Q psy17284 262 ADLSEQISTAGTEASGTG 279 (286)
Q Consensus 262 ~Dv~~~~p~~~~EAsGTs 279 (286)
+|+--|-|.. |.-+|+|
T Consensus 122 vDlNRnf~~~-w~~~~~~ 138 (279)
T PF00246_consen 122 VDLNRNFPYQ-WNEEGSS 138 (279)
T ss_dssp --GGGSSSSS-TTSSSSB
T ss_pred cccccccCcc-ccccccc
Confidence 9999998877 5444443
No 129
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=30.01 E-value=83 Score=29.83 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=51.4
Q ss_pred CccceEEEEeecCCCCCHHHHHHH-HHHHHHHHHHcCCcC---CCCceeEEEEcCCChhhhhh-----------------
Q psy17284 199 KWHTRTIMIGGKAAPGYYTAKKII-KLICSVARVVNNDPD---VGDKLKVVFLENYRVTLAEL----------------- 257 (286)
Q Consensus 199 ~~~p~~~i~~GKa~P~d~~~k~~i-~~i~~~~~~~~~d~~---~~~~~~vvfl~nY~~~~a~~----------------- 257 (286)
..+|.++|.|| -|.....+.++. .++.++.+....||. +-+...+++||-.|..=.+.
T Consensus 51 ~~kp~v~i~~g-iHarE~i~~~~~l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~ 129 (300)
T cd03871 51 VNKPAIFMDCG-FHAREWISPAFCQWFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAG 129 (300)
T ss_pred CCCCeEEEecc-ccccccccHHHHHHHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCC
Confidence 34688888888 899998887754 344455544434442 33457799999876653221
Q ss_pred -hcccccccccCCCCCCCccCcc
Q psy17284 258 -IIPAADLSEQISTAGTEASGTG 279 (286)
Q Consensus 258 -l~~~~Dv~~~~p~~~~EAsGTs 279 (286)
-..|+|+--|-|. .|+-.|+|
T Consensus 130 ~~c~GVDLNRNf~~-~w~~~g~s 151 (300)
T cd03871 130 SSCIGTDPNRNFNA-GWCTVGAS 151 (300)
T ss_pred CCccccccCcCCCC-ccCCCCCC
Confidence 2369999999995 56555554
No 130
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=29.59 E-value=40 Score=31.59 Aligned_cols=80 Identities=6% Similarity=-0.080 Sum_probs=53.4
Q ss_pred ccCCCCccccchhhHHhhHHHHHHhh-cCCccceEEEEeecCCCCCHHHHH-HHHHHHHHHHHHcCCc---CCCCceeEE
Q psy17284 171 VESSFPETGQKFAALITIFLIEERTA-KGKWHTRTIMIGGKAAPGYYTAKK-IIKLICSVARVVNNDP---DVGDKLKVV 245 (286)
Q Consensus 171 ~rR~~~YKR~~l~~l~~i~~~~~~~~-~~~~~p~~~i~~GKa~P~d~~~k~-~i~~i~~~~~~~~~d~---~~~~~~~vv 245 (286)
.+|+.+||+|.+ -+.+.+... .....|..+.+.|--|+.-..|.+ .+.++.+++.. ++| .+.+++.|+
T Consensus 21 ~~~l~~~~~~~~-----~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~--~~~~~~~ll~~~~i~ 93 (271)
T cd06238 21 IARLDQIREDHL-----ALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAA--QGDEIEALLDNAVVL 93 (271)
T ss_pred HHhHHHHHHHHH-----HhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHc--CCHHHHHHHhcCEEE
Confidence 466778888864 222332111 123456677777888999999998 66888888763 344 356667899
Q ss_pred EEcCCChhhhhh
Q psy17284 246 FLENYRVTLAEL 257 (286)
Q Consensus 246 fl~nY~~~~a~~ 257 (286)
++|..|..=.++
T Consensus 94 i~P~~NPDG~~r 105 (271)
T cd06238 94 IDPMQNPDGRDR 105 (271)
T ss_pred EEeccCCCHHHH
Confidence 999999876554
No 131
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=28.89 E-value=2.8e+02 Score=29.31 Aligned_cols=103 Identities=11% Similarity=-0.034 Sum_probs=57.4
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHH-hhcCCc--cceEEEEeecCCCCC-HHHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEER-TAKGKW--HTRTIMIGGKAAPGY-YTAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~-~~~~~~--~p~~~i~~GKa~P~d-~~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
+..+.+.|=|+...|.... +++-.++ ++..+. ..+++|..|-..-.. ..-.++-+.+.++...||..=...
T Consensus 264 ~~~~il~VgRl~~~Kgi~~-----~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~ 338 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPR-----RLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTV 338 (726)
T ss_pred CCEEEEEecCcccccCHHH-----HHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3446777888888888764 3332232 232222 134555544221112 333566777778877777421111
Q ss_pred CceeEEEEcC-CChhhhhhhcccccccccCCCC
Q psy17284 240 DKLKVVFLEN-YRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 240 ~~~~vvfl~n-Y~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
+...|+|+.. .+-+--..+.+++||.+.+|.+
T Consensus 339 ~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~ 371 (726)
T PRK14501 339 DWTPIHYFYRSLPFEELVALYRAADVALVTPLR 371 (726)
T ss_pred CcceEEEEeCCCCHHHHHHHHHhccEEEecccc
Confidence 2234776654 4555555688999999988753
No 132
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=28.28 E-value=1.1e+02 Score=28.99 Aligned_cols=79 Identities=9% Similarity=0.074 Sum_probs=52.1
Q ss_pred ccceEEEEeecCCCCCHHHHHH-HHHHHHHHHHHcCCcCC---CCceeEEEEcCCChhhhh------------------h
Q psy17284 200 WHTRTIMIGGKAAPGYYTAKKI-IKLICSVARVVNNDPDV---GDKLKVVFLENYRVTLAE------------------L 257 (286)
Q Consensus 200 ~~p~~~i~~GKa~P~d~~~k~~-i~~i~~~~~~~~~d~~~---~~~~~vvfl~nY~~~~a~------------------~ 257 (286)
.+|+.+|.|| -|+....+.++ +.++..+......||.+ -++..+++||..|..=-+ -
T Consensus 52 ~kp~v~i~~g-iHarE~i~~~~~l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~ 130 (301)
T cd03870 52 NRPAIWIDAG-IHSREWITQATGVWFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGS 130 (301)
T ss_pred CCceEEEecc-ccccchhhHHHHHHHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCC
Confidence 5688777777 49998777654 45666666655445543 345678888887663221 1
Q ss_pred hcccccccccCCCCCCCccCccc
Q psy17284 258 IIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 258 l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
...|+|+--|-|. .|+-+|+|+
T Consensus 131 ~~~GVDLNRNf~~-~w~~~g~s~ 152 (301)
T cd03870 131 LCVGVDPNRNWDA-GFGGAGASS 152 (301)
T ss_pred CccccccccCCCc-ccCcCCCCC
Confidence 4689999999886 465556554
No 133
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.77 E-value=2.7e+02 Score=30.09 Aligned_cols=101 Identities=9% Similarity=-0.036 Sum_probs=51.8
Q ss_pred ccccccCCCCccccchhhHHhhHHHHHHhhcCCcc--ceEEE-EeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 167 SSGQVESSFPETGQKFAALITIFLIEERTAKGKWH--TRTIM-IGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 167 ~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~--p~~~i-~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+.+.|=|+..-|.-.+ +|--+...++..+.. .+++| +||-+.-....-.++-+.+.++...||..-..-+...
T Consensus 281 lIl~VgRLd~~KGi~~----lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~p 356 (797)
T PLN03063 281 VILGVDRLDMIKGIPQ----KYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVP 356 (797)
T ss_pred EEEEecccccccCHHH----HHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCce
Confidence 4455666666565443 222222223333322 35555 4543221112224466677777666765311123345
Q ss_pred EEEEcC-CChhhhhhhcccccccccCCCC
Q psy17284 244 VVFLEN-YRVTLAELIIPAADLSEQISTA 271 (286)
Q Consensus 244 vvfl~n-Y~~~~a~~l~~~~Dv~~~~p~~ 271 (286)
|+|+.. .+-+---.++.+|||.+.+|.+
T Consensus 357 v~~l~~~v~~~el~aly~~ADvfvvtSlr 385 (797)
T PLN03063 357 IHHLDCSVDFNYLCALYAITDVMLVTSLR 385 (797)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCccc
Confidence 777774 2334444678999999988754
No 134
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=27.69 E-value=12 Score=34.02 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=35.8
Q ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhhhhhhcccccccccCCCCCCCcc
Q psy17284 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEAS 276 (286)
Q Consensus 203 ~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAs 276 (286)
.++|+ |.||.+..+... +++..+.. ..+ ++++.+ ++++..+|-.+.=|...+|+.|+||.
T Consensus 156 ~~lvv--K~HP~~~~~~~~-~~~~~~~~-------~~~---~~~~~~-~~~~~~Ll~~s~~VvtinStvGlEAl 215 (269)
T PF05159_consen 156 AKLVV--KPHPDERGGNKY-SYLEELPN-------LPN---VVIIDD-DVNLYELLEQSDAVVTINSTVGLEAL 215 (269)
T ss_pred CEEEE--EECchhhCCCCh-hHhhhhhc-------CCC---eEEECC-CCCHHHHHHhCCEEEEECCHHHHHHH
Confidence 34444 999976554443 22222222 222 444433 45566777777778999999999984
No 135
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=27.33 E-value=1.8e+02 Score=32.65 Aligned_cols=103 Identities=9% Similarity=0.048 Sum_probs=50.4
Q ss_pred CCCCcccccccCCCCccccchhhHHhhHHHHHHhhc-CCccceEEEEeecCCCCCH--HHHHHHHHHHHHHHHHcCCcCC
Q psy17284 162 STSTSSSGQVESSFPETGQKFAALITIFLIEERTAK-GKWHTRTIMIGGKAAPGYY--TAKKIIKLICSVARVVNNDPDV 238 (286)
Q Consensus 162 ~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~-~~~~p~~~i~~GKa~P~d~--~~k~~i~~i~~~~~~~~~d~~~ 238 (286)
.|+..+.+++=|+.+.|.... +..-..++.. ......++|.|+....... ......+.+.++++.+ .+
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~-----LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l----gL 546 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITT-----LVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY----DL 546 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHH-----HHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh----CC
Confidence 456678899999999999875 3222222222 1112344555542211110 1123344455555532 34
Q ss_pred CCceeEEEEcCCChhhhhhhcccc----cccccCCCCCCCccC
Q psy17284 239 GDKLKVVFLENYRVTLAELIIPAA----DLSEQISTAGTEASG 277 (286)
Q Consensus 239 ~~~~~vvfl~nY~~~~a~~l~~~~----Dv~~~~p~~~~EAsG 277 (286)
.+ +|.|+.--.-+--..++..| ||..+.|+ .|.-|
T Consensus 547 ~g--~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFG 585 (1050)
T TIGR02468 547 YG--QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFG 585 (1050)
T ss_pred CC--eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCC
Confidence 55 67776432222222334433 68777655 35444
No 136
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=26.05 E-value=60 Score=32.84 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=44.4
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCC-ceehhhhhhcCccEEEecC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDG-ANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DG-anvEi~e~vg~eN~fiFG~ 63 (286)
++..+|+.-..|. .|+-|-+-|=+|-.|.+.|+|.-| ...|+.++ ++|.|++..
T Consensus 389 ~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~--g~nG~lv~~ 443 (500)
T TIGR02918 389 VYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIED--NKNGYLIPI 443 (500)
T ss_pred HHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccC--CCCEEEEeC
Confidence 4667888887775 799999999999999999999854 67787765 678998853
No 137
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=25.86 E-value=2e+02 Score=27.88 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=44.5
Q ss_pred ccccccCCCCccccchhhHHhhHHHHHHhhc----CC-ccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCc
Q psy17284 167 SSGQVESSFPETGQKFAALITIFLIEERTAK----GK-WHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK 241 (286)
Q Consensus 167 ~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~----~~-~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~ 241 (286)
+.+.+-|+.+.|.... +..-...+.. .. .....+++.|.. |. -.++.+++.++. +.
T Consensus 234 vi~~~grl~~~K~~~~-----li~A~~~l~~~~~~~~~~~~i~l~ivG~G-~~---~~~l~~~~~~~~--------l~-- 294 (415)
T cd03816 234 LLVSSTSWTPDEDFGI-----LLDALVAYEKSAATGPKLPKLLCIITGKG-PL---KEKYLERIKELK--------LK-- 294 (415)
T ss_pred EEEEeccccCCCCHHH-----HHHHHHHHHHhhcccccCCCEEEEEEecC-cc---HHHHHHHHHHcC--------CC--
Confidence 3444568888888764 3222233321 11 123788888863 21 223333333221 22
Q ss_pred eeEEEEcCC-Chhhhhhhcccccccc
Q psy17284 242 LKVVFLENY-RVTLAELIIPAADLSE 266 (286)
Q Consensus 242 ~~vvfl~nY-~~~~a~~l~~~~Dv~~ 266 (286)
.++|+..| .-+-...++++||+..
T Consensus 295 -~~~~~~g~~~~~~~~~~l~~aDv~v 319 (415)
T cd03816 295 -KVTIRTPWLSAEDYPKLLASADLGV 319 (415)
T ss_pred -cEEEEcCcCCHHHHHHHHHhCCEEE
Confidence 28888765 5666777999999986
No 138
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=25.40 E-value=84 Score=27.99 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=37.2
Q ss_pred cccccccccccccCcc---cCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEec
Q psy17284 6 IIPAADLSEQISTAGT---EASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62 (286)
Q Consensus 6 iipa~Dis~qis~ag~---EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG 62 (286)
++.+||+--..|..+. +.+++.-+-+|.-|...|+|..|..-|+..+ .++.+++.
T Consensus 291 ~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~--~~~g~~~~ 348 (394)
T cd03794 291 LLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE--AGAGLVVP 348 (394)
T ss_pred HHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc--CCcceEeC
Confidence 4567788776665542 2333335789999999999999988776654 14555554
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.71 E-value=73 Score=33.88 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=44.6
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~ 63 (286)
++.++|+.-..|. .|..|..-+-+|..|...|+|.-|..-|+.++ .+|.|++..
T Consensus 588 ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d--g~~GlLv~~ 641 (694)
T PRK15179 588 WLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE--GVTGLTLPA 641 (694)
T ss_pred HHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccC--CCCEEEeCC
Confidence 5678899888775 68888889999999999999998888787764 568888864
No 140
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=24.53 E-value=70 Score=29.03 Aligned_cols=45 Identities=13% Similarity=-0.102 Sum_probs=37.3
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhh
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEE 52 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~ 52 (286)
++-.||+--+.|. .|..|..-+-+|--|.+.|+|..|..-|+.+.
T Consensus 263 ~~~~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~ 307 (358)
T cd03812 263 LLQAMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD 307 (358)
T ss_pred HHHhcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc
Confidence 4567898888776 49999999999999999999998887666543
No 141
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.02 E-value=1.2e+02 Score=31.73 Aligned_cols=94 Identities=7% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCCCCCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCC
Q psy17284 160 DISTSTSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVG 239 (286)
Q Consensus 160 ~~~~~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~ 239 (286)
.+.++..+.+.+=|+++.|.+.. +|-...+.++..+ +..+++.| |..-++-++...+-...-++
T Consensus 393 ~l~~~~~vIg~VgRl~~~Kg~~~----LI~A~a~llk~~p--dirLvIVG-----dG~~~eeLk~la~elgL~d~----- 456 (578)
T PRK15490 393 KTQDADTTIGGVFRFVGDKNPFA----WIDFAARYLQHHP--ATRFVLVG-----DGDLRAEAQKRAEQLGILER----- 456 (578)
T ss_pred ccCCCCcEEEEEEEEehhcCHHH----HHHHHHHHHhHCC--CeEEEEEe-----CchhHHHHHHHHHHcCCCCc-----
Q ss_pred CceeEEEEcCCChhhhhhhcccccccccCCCCCCCccC
Q psy17284 240 DKLKVVFLENYRVTLAELIIPAADLSEQISTAGTEASG 277 (286)
Q Consensus 240 ~~~~vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsG 277 (286)
|.|+.. .+-...+++++||....|. +|..|
T Consensus 457 ----V~FlG~--~~Dv~~~LaaADVfVlPS~--~EGfp 486 (578)
T PRK15490 457 ----ILFVGA--SRDVGYWLQKMNVFILFSR--YEGLP 486 (578)
T ss_pred ----EEECCC--hhhHHHHHHhCCEEEEccc--ccCcc
No 142
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=22.55 E-value=82 Score=30.52 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=39.7
Q ss_pred cccccccccccccCc-ccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCCHHHHH
Q psy17284 6 IIPAADLSEQISTAG-TEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMTVDQVE 69 (286)
Q Consensus 6 iipa~Dis~qis~ag-~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~~~eV~ 69 (286)
++.+||+.--.+... .|.-+..-+-+|-=|...|+|.-|..-|+.++ .+|.++++ ++++++
T Consensus 311 ~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~--~~~G~lv~-d~~~la 372 (415)
T cd03816 311 LLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKH--GENGLVFG-DSEELA 372 (415)
T ss_pred HHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcC--CCCEEEEC-CHHHHH
Confidence 455788864211111 13334445677888999999998877787765 57889986 555553
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.46 E-value=1.7e+02 Score=31.22 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=49.1
Q ss_pred CcccccccCCCCccccchhhHHhhHHHHHHh-hcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 165 TSSSGQVESSFPETGQKFAALITIFLIEERT-AKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 165 ~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~-~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
.+..+++=|+.+.|++.+ +..-...+ +..+ ...+++.|.. | .. ..+.++++.++ +.+ +
T Consensus 517 ~~vIg~VGRL~~~KG~~~-----LI~A~a~l~~~~p--~~~LvIvG~G-~--~~-----~~L~~l~~~lg----L~~--~ 575 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFL-----WVEAAQRFAASHP--KVRFIMVGGG-P--LL-----ESVREFAQRLG----MGE--R 575 (694)
T ss_pred CeEEEEEEeCCccCCHHH-----HHHHHHHHHHHCc--CeEEEEEccC-c--ch-----HHHHHHHHHcC----CCC--c
Confidence 456778899999999985 22222222 2222 3678787753 1 11 22333444321 333 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccC
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASG 277 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsG 277 (286)
|.|+. |. +--..+++++|+....|+ +|..|
T Consensus 576 V~flG-~~-~dv~~ll~aaDv~VlpS~--~Egfp 605 (694)
T PRK15179 576 ILFTG-LS-RRVGYWLTQFNAFLLLSR--FEGLP 605 (694)
T ss_pred EEEcC-Cc-chHHHHHHhcCEEEeccc--cccch
Confidence 66644 43 334467899999988875 45443
No 144
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=22.28 E-value=1.3e+02 Score=27.09 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCcccccccCCCCccccchhhHHhhHHHHHHhhcCCccceEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCcee
Q psy17284 164 STSSSGQVESSFPETGQKFAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK 243 (286)
Q Consensus 164 ~~~~~~~~rR~~~YKR~~l~~l~~i~~~~~~~~~~~~~p~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~ 243 (286)
+..+.+.+=|+...|...+ +..-..++.+. ..+.+|++.|. .|. .+.+.+++ +..+ ..+ +
T Consensus 187 ~~~~~l~~g~~~~~kg~~~-----li~a~~~l~~~-~~~~~l~i~G~-g~~---~~~~~~~~----~~~~----~~~--~ 246 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPN-----LLKAFAKLLSD-YLDIKLLIAGD-GPL---RATLERLI----KALG----LSN--R 246 (360)
T ss_pred CCEEEEEEeeCchhcCcHH-----HHHHHHHHHhh-CCCeEEEEEcC-CCc---HHHHHHHH----HhcC----CCC--c
Confidence 3445556667777777664 33222332211 13578888884 221 12333333 2221 122 4
Q ss_pred EEEEcCCChhhhhhhcccccccccCCCCCCCccC
Q psy17284 244 VVFLENYRVTLAELIIPAADLSEQISTAGTEASG 277 (286)
Q Consensus 244 vvfl~nY~~~~a~~l~~~~Dv~~~~p~~~~EAsG 277 (286)
|.|+... +-...++.+||+.+..|.. |..|
T Consensus 247 v~~~g~~--~~~~~~~~~ad~~v~~s~~--e~~~ 276 (360)
T cd04951 247 VKLLGLR--DDIAAYYNAADLFVLSSAW--EGFG 276 (360)
T ss_pred EEEeccc--ccHHHHHHhhceEEecccc--cCCC
Confidence 7776532 3344578999998876553 5443
No 145
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=21.51 E-value=1.2e+02 Score=29.39 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=35.2
Q ss_pred cCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecC
Q psy17284 18 TAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGM 63 (286)
Q Consensus 18 ~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~ 63 (286)
+...|.-|.+-|-+|--|...|+|.-|...|+.++ .+|.+++..
T Consensus 317 ~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~--~~~G~l~~~ 360 (407)
T cd04946 317 LSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDN--GGNGLLLSK 360 (407)
T ss_pred CCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcC--CCcEEEeCC
Confidence 33578888889999999999999999998887764 457777743
No 146
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=21.03 E-value=2.1e+02 Score=27.07 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=49.5
Q ss_pred ccceEEEEeecCCCCCHHHHH-HHHHHHHHHHHHcCCcCC---CCceeEEEEcCCChhhhhh------------------
Q psy17284 200 WHTRTIMIGGKAAPGYYTAKK-IIKLICSVARVVNNDPDV---GDKLKVVFLENYRVTLAEL------------------ 257 (286)
Q Consensus 200 ~~p~~~i~~GKa~P~d~~~k~-~i~~i~~~~~~~~~d~~~---~~~~~vvfl~nY~~~~a~~------------------ 257 (286)
.+|+.+|.|| -|+.-..+-+ ++.++.++......||.+ .++..++++|..|..=.+.
T Consensus 53 ~k~~v~i~~g-iHarE~~~~~~~l~~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~ 131 (304)
T cd06248 53 SKPAIVIHGT-VHAREWISTMTVEYLAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGS 131 (304)
T ss_pred CCcEEEEECC-cCcCccccHHHHHHHHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCC
Confidence 4577777665 6888766655 455666676655445544 3456788998766643221
Q ss_pred hcccccccccCCCCCCCccCccc
Q psy17284 258 IIPAADLSEQISTAGTEASGTGN 280 (286)
Q Consensus 258 l~~~~Dv~~~~p~~~~EAsGTs~ 280 (286)
-..|+|+--|-|. .|+-.|+|.
T Consensus 132 ~~~GVDLNRNf~~-~w~~~g~s~ 153 (304)
T cd06248 132 SCVGTDLNRNWPY-KWDGGGSST 153 (304)
T ss_pred CceeecCCCCCCC-cccCCCCCC
Confidence 2368999999885 355445443
No 147
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=20.75 E-value=1.4e+02 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.519 Sum_probs=34.7
Q ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHHHcCCcCCCCceeEEEEcCCChhh
Q psy17284 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTL 254 (286)
Q Consensus 203 ~~~i~~GKa~P~d~~~k~~i~~i~~~~~~~~~d~~~~~~~~vvfl~nY~~~~ 254 (286)
|=||+||- .+.+..+++|+.+ .+..+| ++.+|=.+||..|.|+.
T Consensus 95 RPfILaGH----SQGs~~l~~LL~e---~~~~~p-l~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 95 RPFILAGH----SQGSMHLLRLLKE---EIAGDP-LRKRLVAAYLIGYPVTV 138 (207)
T ss_pred CCEEEEEe----ChHHHHHHHHHHH---HhcCch-HHhhhheeeecCccccH
Confidence 45888884 4677777777765 455688 99999999999999977
No 148
>PF07367 FB_lectin: Fungal fruit body lectin; InterPro: IPR009960 This family consists of several fungal fruit body lectin proteins. Fruit body lectins are thought to have insecticidal activity [] and may also function in capturing nematodes []. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The fold of lectin xcl is not related to any of several lectin folds, but but shows significant structural similarity to cytolysins [].; PDB: 3QDX_A 3QDT_B 3QDW_A 3QDY_A 3QDU_A 3QDS_A 3QDV_B 1XI0_A 1X99_B 1Y2X_C ....
Probab=20.59 E-value=30 Score=29.43 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=7.5
Q ss_pred CCccCcccc
Q psy17284 273 TEASGTGNM 281 (286)
Q Consensus 273 ~EAsGTs~M 281 (286)
+..||||||
T Consensus 45 mggSGTSG~ 53 (140)
T PF07367_consen 45 MGGSGTSGM 53 (140)
T ss_dssp ESSSSEEEE
T ss_pred ecCCCcceE
Confidence 568999998
No 149
>PRK10125 putative glycosyl transferase; Provisional
Probab=20.57 E-value=75 Score=30.99 Aligned_cols=54 Identities=13% Similarity=-0.053 Sum_probs=44.9
Q ss_pred cccccccccccccCcccCCCCcchhhhhccceEeecCCCceehhhhhhcCccEEEecCC
Q psy17284 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFGMT 64 (286)
Q Consensus 6 iipa~Dis~qis~ag~EASGTsnMKf~mNGal~igT~DGanvEi~e~vg~eN~fiFG~~ 64 (286)
++.++|+--.-|. .|.-|+..+=+|.-|...|+|.=|..-|+.+ ++|.+++...
T Consensus 303 ~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~---~~~G~lv~~~ 356 (405)
T PRK10125 303 ALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQ---KSGGKTVSEE 356 (405)
T ss_pred HHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEe---CCcEEEECCC
Confidence 4567899887776 7999999999999999999999888777664 4589998654
No 150
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=76 Score=26.04 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=22.1
Q ss_pred HHHcCCCCCccccCChhHHHHHHHHhcCCCCC
Q psy17284 71 LKKKGYDAPSYYNANPELKLVVDQITNGFFSP 102 (286)
Q Consensus 71 l~~~gy~p~~~~~~np~L~~vlD~i~~G~f~~ 102 (286)
||+-||+|-.--..|-.-+.+++|+..|.++|
T Consensus 82 lramgy~p~~e~~~~i~~~~i~~qle~Gei~p 113 (122)
T COG3877 82 LRAMGYNPDSENSVNIGKKKIIDQLEKGEISP 113 (122)
T ss_pred HHHcCCCCCCCChhhhhHHHHHHHHHcCCCCH
Confidence 45667887655445555567888888888865
Done!