RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17284
(286 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 245 bits (629), Expect = 8e-76
Identities = 82/118 (69%), Positives = 96/118 (81%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
AE IIPAADLSEQISTAG EASGTGNMKFMLNGALTIGTLDGANVE+AEE+G +NIFIF
Sbjct: 621 LAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIF 680
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWD 119
G+T ++VE L+ GY YY A+PEL+ V+DQI +GFFSP +P EF+ L D LL +
Sbjct: 681 GLTAEEVEALRANGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNGN 738
Score = 206 bits (528), Expect = 2e-61
Identities = 69/86 (80%), Positives = 72/86 (83%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
RT + GGKAAPGYY AK IIKLI +VA VVNNDPDVGDKLKVVFL NY V+LAE I
Sbjct: 566 DIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKI 625
Query: 259 IPAADLSEQISTAGTEASGTGNMKFM 284
IPAADLSEQISTAG EASGTGNMKFM
Sbjct: 626 IPAADLSEQISTAGKEASGTGNMKFM 651
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 217 bits (556), Expect = 2e-65
Identities = 82/114 (71%), Positives = 97/114 (85%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AELIIPAADLSEQISTAG EASGTGNMKFMLNGALTIGTLDGANVE+ EE+G +NIFIFG
Sbjct: 619 AELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFG 678
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
+TV++VE L++KGY+ YY A+PELK V+D I++G FSP +P F+ L D LL
Sbjct: 679 LTVEEVEALREKGYNPREYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLL 732
Score = 185 bits (473), Expect = 1e-53
Identities = 68/86 (79%), Positives = 73/86 (84%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
RT++ GGKAAPGY+ AK IIKLI SVA VVNNDP VGDKLKVVF+ NY V+LAELI
Sbjct: 563 DIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELI 622
Query: 259 IPAADLSEQISTAGTEASGTGNMKFM 284
IPAADLSEQISTAG EASGTGNMKFM
Sbjct: 623 IPAADLSEQISTAGKEASGTGNMKFM 648
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 209 bits (535), Expect = 8e-63
Identities = 80/118 (67%), Positives = 97/118 (82%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE IIPA+D+SEQISTAGTEASGT NMKF LNGALTIGTLDGANVE+AEE+G +NIFIFG
Sbjct: 536 AEKIIPASDISEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIFIFG 595
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
+T ++VE L+KKGY + YY +P L+ V+DQI +GFFSPE+PD F+D+ D L D
Sbjct: 596 LTAEEVEALRKKGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRFRDILDSLQGGDY 653
Score = 176 bits (449), Expect = 1e-50
Identities = 66/87 (75%), Positives = 73/87 (83%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
R ++ GGKAAPGYY AK+IIKLI SVA VVNNDP VGDKLKVVFL NYRV+LAE I
Sbjct: 480 DVVPRVVIFGGKAAPGYYMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYRVSLAEKI 539
Query: 259 IPAADLSEQISTAGTEASGTGNMKFMI 285
IPA+D+SEQISTAGTEASGT NMKF +
Sbjct: 540 IPASDISEQISTAGTEASGTSNMKFAL 566
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 184 bits (469), Expect = 3e-53
Identities = 67/115 (58%), Positives = 84/115 (73%), Gaps = 1/115 (0%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AEL+IPAAD+ EQI TAG EASGT NMK LNGALT+GTLDGANVE+ E +G +N +IFG
Sbjct: 570 AELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629
Query: 63 MTVDQVEELKKKGYDAPS-YYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
TV++V+ L+ GYD + YY E+K V+D+I +G FSP FK+L D LL
Sbjct: 630 ETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLL 684
Score = 145 bits (368), Expect = 2e-39
Identities = 54/90 (60%), Positives = 61/90 (67%), Gaps = 7/90 (7%)
Query: 197 KGKWHTRTIMI-GGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLA 255
K W R +I GKA P Y AK+IIKLI VA V+NN KLKVVFL NY V+LA
Sbjct: 517 KEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLA 570
Query: 256 ELIIPAADLSEQISTAGTEASGTGNMKFMI 285
EL+IPAAD+ EQI TAG EASGT NMK +
Sbjct: 571 ELLIPAADVWEQIPTAGKEASGTSNMKAAL 600
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 182 bits (465), Expect = 1e-52
Identities = 64/115 (55%), Positives = 83/115 (72%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AEL+IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 621 AELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFG 680
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK 117
TV+QV+ L KGYD + + L V+ ++ +G +S + F + L +
Sbjct: 681 HTVEQVKALLAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQ 735
Score = 148 bits (376), Expect = 3e-40
Identities = 58/82 (70%), Positives = 64/82 (78%)
Query: 201 HTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIP 260
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AEL+IP
Sbjct: 567 VPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIP 626
Query: 261 AADLSEQISTAGTEASGTGNMK 282
AAD+SEQISTAG EASGTGNMK
Sbjct: 627 AADISEQISTAGKEASGTGNMK 648
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 182 bits (463), Expect = 2e-52
Identities = 74/114 (64%), Positives = 88/114 (77%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
A+LIIPAADLSEQIS AGTEASGT NMKF LNGALTIGTLDGANVEM E +G +NIFIFG
Sbjct: 635 AQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFG 694
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
T ++VE L+++GY YY + EL V+ QI +G FSPE P ++DL D L+
Sbjct: 695 NTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLI 748
Score = 141 bits (358), Expect = 6e-38
Identities = 60/85 (70%), Positives = 67/85 (78%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
KW R + GKAA YY AK II LI VA+V+NNDP +GDKLKVVF+ NY V+LA+LI
Sbjct: 579 KWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLI 638
Query: 259 IPAADLSEQISTAGTEASGTGNMKF 283
IPAADLSEQIS AGTEASGT NMKF
Sbjct: 639 IPAADLSEQISLAGTEASGTSNMKF 663
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 46.9 bits (112), Expect = 6e-06
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 205 IMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADL 264
I+ GKA P K+II+ I ++ P+ + +VFLENY + LA ++ D+
Sbjct: 427 IVFAGKAHPADGEGKEIIQRIVEFSK----RPEFRGR--IVFLENYDINLARYLVSGVDV 480
Query: 265 SEQISTAGTEASGTGNMK 282
EASGT MK
Sbjct: 481 WLNNPRRPLEASGTSGMK 498
Score = 35.4 bits (82), Expect = 0.035
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 22 EASGTGNMKFMLNGALTIGTLDG 44
EASGT MK +NG L + LDG
Sbjct: 490 EASGTSGMKAAMNGVLNLSILDG 512
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 43.7 bits (104), Expect = 7e-05
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 24/87 (27%)
Query: 205 IMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAAD- 263
+ GKA P K++I+ I +R P+ + +VFLE+Y + LA ++ D
Sbjct: 516 FIFAGKAHPADEPGKELIQEIVEFSR----RPEFRGR--IVFLEDYDMALARHLVQGVDV 569
Query: 264 --------LSEQISTAGTEASGTGNMK 282
L EASGT MK
Sbjct: 570 WLNTPRRPL---------EASGTSGMK 587
Score = 36.8 bits (86), Expect = 0.013
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 22 EASGTGNMKFMLNGALTIGTLDG 44
EASGT MK LNG L + LDG
Sbjct: 579 EASGTSGMKAALNGGLNLSVLDG 601
>gnl|CDD|215970 pfam00523, Fusion_gly, Fusion glycoprotein F0.
Length = 468
Score = 32.7 bits (75), Expect = 0.22
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 214 GYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIPAADLSEQISTAGT 273
G T+ ++KL+ N P + + LE Y TL EL+ P AD + IS T
Sbjct: 24 GSSTSYIVVKLL-------PNIPPLKNSCIKTELEQYNNTLNELLTPLADALDLISRLIT 76
Query: 274 EASGTGNMKF 283
+G +F
Sbjct: 77 TITGRRQKRF 86
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 29.9 bits (67), Expect = 1.2
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 9 AADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIF 59
AAD+ + + E G ++ M G I T G E+ E+ +
Sbjct: 181 AADVF--VLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 261
Score = 28.3 bits (64), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 21 TEASG---TGNMKFMLNGALTI--GTLDGANVEMAEEMGN 55
T ASG G LNG T+ G L+ +NV + EE+ N
Sbjct: 195 TAASGAPIEGTPG--LNGLGTLRQGFLETSNVNVVEELVN 232
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 28.5 bits (64), Expect = 4.6
Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 9 AADLSEQISTAGTEASGTGNMKFMLNGALTIGT---LDGANVEMAEEMGNDNIFIFGM-- 63
A E++ EA G + +G L GT L GA +E A I G+
Sbjct: 164 AVRAVEEV----FEAPGWISFPVFDSGTLVDGTGLTLSGATIEAALNSVQAEIDAVGVNC 219
Query: 64 -----TVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKW 118
+D++ EL P + P D PDE L ++
Sbjct: 220 ALGPDIMDEILELLSLTARKP--LSVYPNSGEPYDA--GKKEYDGTPDELAPSYWSLKEF 275
Query: 119 DRPGA 123
GA
Sbjct: 276 VASGA 280
>gnl|CDD|222397 pfam13814, Replic_Relax, Replication-relaxation. This family
includes proteins which are essential for plasmid
replication and plasmid DNA relaxation.
Length = 191
Score = 27.7 bits (62), Expect = 5.2
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 96 TNGFF------SPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTF 149
N F S + E + + I G RW GR F
Sbjct: 93 VNEVFVALLAASRQEGGELTEWWSEPRCTRQYTNIKGAGKKIRPDAYGRWTEGGRTLEFF 152
Query: 150 MEHFRGSSHR 159
+E RG+
Sbjct: 153 LEVDRGTEPL 162
>gnl|CDD|225347 COG2733, COG2733, Predicted membrane protein [Function unknown].
Length = 415
Score = 28.1 bits (63), Expect = 5.5
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 203 RTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLK-------VVFLENYRVTLA 255
+ + K++ + + SV + D + KL E +
Sbjct: 303 SEWLKEDYESEDSMLRKRLARAVQSVGEELIADDALRAKLNEHLVQAAERLAEEKHAEIT 362
Query: 256 ELIIP------AADLSEQI 268
+ I A +LS QI
Sbjct: 363 KHISDTVKRWDAEELSRQI 381
>gnl|CDD|153101 cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like
diiron-binding domain. Demethoxyubiquinone hydroxylases
(DMQH) are members of the ferritin-like,
diiron-carboxylate family which are present in
eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the
Coq7 family). DMQH participates in one of the last steps
of ubiquinone biosysnthesis and is responsible for DMQ
hydroxylation, resulting in the formation of
hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a
mitochondrial inner membrane protein and Coq7 is a
proposed interfacial integral membrane protein.
Mutations in the Caenorhabditis elegans gene clk-1
affect biological timing and extend longevity. The
conserved residues of a diiron center are present in
this domain.
Length = 165
Score = 27.5 bits (62), Expect = 6.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 208 GGKAAPGYYTAKKIIKLICSVA 229
G + AP Y K +IK C VA
Sbjct: 138 GAEKAPLYALLKALIKAGCKVA 159
>gnl|CDD|219024 pfam06429, Flg_bbr_C, Flagellar basal body rod FlgEFG protein
C-terminal. This family consists of a number of
C-terminal domains of unknown function. This domain
seems to be specific to flagellar basal-body rod and
flagellar hook proteins in which pfam00460 is often
present at the extreme N terminus.
Length = 74
Score = 26.1 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 21 TEASGTGNMKFMLNGALTIGTLDGANVEMAEEM 53
E G NG + G L+G+NV EEM
Sbjct: 12 RETDGAPIAGADANGRVAQGYLEGSNVNPVEEM 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.384
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,818,291
Number of extensions: 1444459
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1274
Number of HSP's successfully gapped: 35
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)