RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17284
(286 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 243 bits (622), Expect = 8e-75
Identities = 79/119 (66%), Positives = 100/119 (84%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIF
Sbjct: 641 LAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIF 700
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
GM V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 701 GMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 208 bits (533), Expect = 4e-62
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+L+V+FLENYRV+LAE +
Sbjct: 586 FVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKV 645
Query: 259 IPAADLSEQISTAGTEASGTGNMKFM 284
IPAADLSEQISTAGTEASGTGNMKFM
Sbjct: 646 IPAADLSEQISTAGTEASGTGNMKFM 671
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 241 bits (618), Expect = 2e-74
Identities = 62/116 (53%), Positives = 82/116 (70%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIF
Sbjct: 617 AAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIF 676
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLK 117
G TV+QV+ + KGYD + + L V+ ++ +G +S + F + + K
Sbjct: 677 GHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGK 732
Score = 207 bits (530), Expect = 7e-62
Identities = 57/86 (66%), Positives = 63/86 (73%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
R + G KAAPGYY AK II I VA V+NNDP VGDKLKVVFL +Y V+ AE +
Sbjct: 562 DRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKL 621
Query: 259 IPAADLSEQISTAGTEASGTGNMKFM 284
IPAAD+SEQISTAG EASGTGNMK
Sbjct: 622 IPAADISEQISTAGKEASGTGNMKLA 647
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 235 bits (601), Expect = 5e-72
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
AE I+PA+D+SEQISTAG EASGT NMKFM+NGALT+GT+DGANVE+ + +G +N +IF
Sbjct: 607 PAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIF 666
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
G V+++ L ++ Y Y P LK +D + NG + N F DL L+
Sbjct: 667 GARVEELPAL-RESYKPYELYETVPGLKRALDALDNGTLNDNNSGLFYDLKHSLI 720
Score = 208 bits (532), Expect = 5e-62
Identities = 57/86 (66%), Positives = 67/86 (77%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
RT++ G KAAPGY AK IIKLI S+A +VNNDP+V LKVVF+ENY V+ AE I
Sbjct: 552 DIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHI 611
Query: 259 IPAADLSEQISTAGTEASGTGNMKFM 284
+PA+D+SEQISTAG EASGT NMKFM
Sbjct: 612 LPASDVSEQISTAGKEASGTSNMKFM 637
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 227 bits (581), Expect = 1e-68
Identities = 65/116 (56%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Query: 2 KAELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIF 61
KAE+IIPA+DLSE ISTAGTEASGT NMKF++NG L IGT+DGANVE+ E+G DN+F+F
Sbjct: 700 KAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLF 759
Query: 62 GMTVDQVEELKKK-GYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
G + VEEL+ Y L V+ I +G FSPENP+EFK L D +
Sbjct: 760 GNLSENVEELRYNHQYHPQDLP---SSLDSVLSYIESGQFSPENPNEFKPLVDSIK 812
Score = 206 bits (526), Expect = 6e-61
Identities = 54/88 (61%), Positives = 66/88 (75%)
Query: 197 KGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAE 256
K+ + + GGK+APGYY AK IIKLI VA +VNND + LKVVF+ +Y V+ AE
Sbjct: 643 ARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAE 702
Query: 257 LIIPAADLSEQISTAGTEASGTGNMKFM 284
+IIPA+DLSE ISTAGTEASGT NMKF+
Sbjct: 703 IIIPASDLSEHISTAGTEASGTSNMKFV 730
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 50/296 (16%), Positives = 94/296 (31%), Gaps = 88/296 (29%)
Query: 6 IIPAADLSEQISTAGTEASGTGNMKFMLNGALTIG----------TLDGANVEMAEEMGN 55
++ A I+ + S +++ + IG +L + +E + E
Sbjct: 277 LVTAV----AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 56 DN----IFIFGMTVDQVEELKKKGYDAPSYYNAN-PELKLVVDQITNGFFSPEN------ 104
+ I +T +QV++ K N++ P K V + NG +N
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNK-------TNSHLPAGKQVEISLVNG---AKNLVVSGP 382
Query: 105 PDEFKDLSDILLKWDRPGA-----IPL--KGPVPTTQLVLRWASSGRWPVT--FMEHFRG 155
P L+ L K P IP + + + + PV F H
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---------PVASPF--H--- 428
Query: 156 SSH---------RDISTSTSSSGQVESSFP----ETG---QKFAALITIFLIEERTAKG- 198
S +D+ + S + P G + + I+ +++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 199 KW----HTRTIMI-----GGKAAPGYYTAKKI----IKLICSVARVVNNDPDVGDK 241
KW + I GG + G T + +++I + +N D D G K
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 35.8 bits (82), Expect = 0.016
Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 83/220 (37%)
Query: 120 RP-----GAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRD-----ISTSTSS-- 167
RP G++ VPT F S ++ + T
Sbjct: 7 RPLTLSHGSLEHVLLVPTAS-----------------FFIASQLQEQFNKILPEPTEGFA 49
Query: 168 -----SGQVE--SSF---------PETGQKFAALITIFLIE-ERTA-KGK-WHTRTIMIG 208
+ E F P +F ++ + L E E +G H +
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 209 GKAAPGYYTAKKIIKLICS--VARVVNNDP-------------DVGD-KLKVVF------ 246
+ K++IK + AR++ P G+ +L +F
Sbjct: 110 QENDTTLVKTKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 247 ------L----ENYRVTLAELIIPAADLSEQISTAGTEAS 276
L + Y V + +LI +A+ ++ +A
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Score = 34.3 bits (78), Expect = 0.045
Identities = 41/265 (15%), Positives = 72/265 (27%), Gaps = 119/265 (44%)
Query: 62 GMTVDQVEELKKKGYDAPSYYNANPELKLVVDQI------TNGFFSPENPDEFKDLSDIL 115
GM G D Y + + V ++ T GF + DI+
Sbjct: 1630 GM-----------GMDL---YKTSKAAQDVWNRADNHFKDTYGF----------SILDIV 1665
Query: 116 LKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDI---------STSTS 166
+ PV HF G + I T
Sbjct: 1666 INN---------------------------PVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 167 SSGQVESSFPETGQKFAALI----------T------IFLI-----EERTAKGKWHTRTI 205
+ E F E + + T + L+ E+ +KG
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 206 MIG---GKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIP-- 260
G G+ Y A L S+A V+ + ++VVF YR ++ +P
Sbjct: 1759 FAGHSLGE-----YAA-----L-ASLADVM----SIESLVEVVF---YRGMTMQVAVPRD 1800
Query: 261 ---------AADLSEQISTAGTEAS 276
A +++ + ++ +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEA 1825
Score = 30.8 bits (69), Expect = 0.56
Identities = 43/263 (16%), Positives = 72/263 (27%), Gaps = 94/263 (35%)
Query: 59 FIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDI---- 114
F+ G VE K +D L L + + N + N DI
Sbjct: 64 FL-GYVSSLVEPSKVGQFD--------QVLNLCLTEFENCYLE-GN--------DIHALA 105
Query: 115 --LLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSS---- 168
LL+ + + T+ +++ ++ R + R ++S+
Sbjct: 106 AKLLQEND-------TTLVKTKELIK---------NYITA-RIMAKRPFDKKSNSALFRA 148
Query: 169 -------------GQ--VESSFPE------TGQKF-AALITIF------LIEERTAKGKW 200
GQ + F E T LI LI K
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 201 HTRTIMIGG-----KAAPG-YYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTL 254
T+ + I P Y ++ P +G V+ L +Y VT
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLS------IPISC-----PLIG----VIQLAHYVVTA 253
Query: 255 AELIIPAADLSEQISTAGTEASG 277
L +L + A + G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQG 276
Score = 29.2 bits (65), Expect = 2.2
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 23/65 (35%)
Query: 60 IFGMTVDQVEELKKKGY-DAPSY--------YNANPELKLVVDQITNGFFSPENPDEFKD 110
+ M E+LK KG A + Y A L S +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-----LAS---LADVMS------IES 1781
Query: 111 LSDIL 115
L +++
Sbjct: 1782 LVEVV 1786
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.019
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 23/127 (18%)
Query: 48 EMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPELKLVVDQITN---GFFSPEN 104
++ E+ N + + E + G + + D++T +
Sbjct: 317 DLPREVLTTNPRRLSI----IAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLE 367
Query: 105 PDEFKDLSDILLKWDRPGAI-PLKGPVPTTQLVLRWA-SSGRWPVTFMEHFRGSS--HRD 160
P E++ + D L ++ P +PT L L W + + S +
Sbjct: 368 PAEYRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 161 ISTSTSS 167
ST S
Sbjct: 421 PKESTIS 427
Score = 32.9 bits (74), Expect = 0.14
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 51/182 (28%)
Query: 63 MTVDQVEELKKK---GYDAPSYYNANPELKLVVDQITNGFFS--------PENPDEFKDL 111
+ ++ L + Y+ P ++++ + +D F+S E+P+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLF 493
Query: 112 SDILLKWDRPGAIPLKGPVPTTQLVLRW------ASSGRWPVTFMEHFRGSSHRDISTST 165
+ L D R+ S W GS +
Sbjct: 494 RMVFL--D-----------------FRFLEQKIRHDSTAWNA------SGSILNTLQQLK 528
Query: 166 SSSGQVESSFPETGQKFAALITIFL--IEERTAKGKWHTRTIMIG--GKAAPGYYTAKKI 221
+ + P+ + A++ FL IEE K +T + I + + A K
Sbjct: 529 FYKPYICDNDPKYERLVNAILD-FLPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQ 586
Query: 222 IK 223
++
Sbjct: 587 VQ 588
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A
{Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A*
1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A
2lf1_A*
Length = 162
Score = 27.9 bits (63), Expect = 2.5
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 26 TGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
T + GA+ + + A++ + + I G
Sbjct: 63 THQEDYQAQGAVVVHDVAAV-FAYAKQHLDQELVIAG 98
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex,
MBP 2 fold, ABC transporter fold, thermophilic protein;
HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Length = 409
Score = 28.5 bits (64), Expect = 2.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 76 YDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDIL 115
YD P+ + +P LK + N P P + LS+I+
Sbjct: 338 YDDPAVVSKSPHLKELRAVFENAVPRPIVP-YYPQLSEII 376
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 28.1 bits (62), Expect = 3.4
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 205 IMIGGKAAPGYYTAKK----IIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELIIP 260
I++ G A YT+ + IIKL+ ++ + LE Y TL L+ P
Sbjct: 11 IVVTGDKAVNIYTSSQTGSIIIKLLPNMPKDKEA-------CAKAPLEAYNRTLTTLLTP 63
Query: 261 AADLSEQISTAGTEASGTGNMKF 283
D +I + T + G +
Sbjct: 64 LGDSIRRIQESVTTSGGGKQGRL 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.384
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,486,064
Number of extensions: 282084
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 23
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)