RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17284
(286 letters)
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 189 bits (482), Expect = 1e-55
Identities = 79/118 (66%), Positives = 100/118 (84%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAADLSEQISTAGTEASGTGNMKFMLNGALTIGT+DGANVEMAEE G +N FIFG
Sbjct: 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG 701
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDR 120
M V+ V+ L ++GY+A YY+ PEL+ +++Q+++GFFSP+ PD FKD+ ++L+ DR
Sbjct: 702 MRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDR 759
Score = 147 bits (371), Expect = 2e-40
Identities = 67/104 (64%), Positives = 83/104 (79%)
Query: 182 FAALITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDK 241
+IT++ ++ RT+MIGGKAAPGY+ AK IIKLI ++ VVN+DP VGD+
Sbjct: 569 CLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDR 628
Query: 242 LKVVFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
L+V+FLENYRV+LAE +IPAADLSEQISTAGTEASGTGNMKFM+
Sbjct: 629 LRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFML 672
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 176 bits (448), Expect = 7e-51
Identities = 64/120 (53%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE+IIPA+DLSE ISTAGTEASGT NMKF++NG L IGT+DGANVE+ E+G DN+F+FG
Sbjct: 698 AEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFG 757
Query: 63 MTVDQVEELK-KKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILLKWDRP 121
+ VEEL+ Y L V+ I +G FSPENP+EFK L D +
Sbjct: 758 NLSENVEELRYNHQYHPQDLP---SSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHGDY 814
Score = 144 bits (364), Expect = 2e-39
Identities = 54/87 (62%), Positives = 67/87 (77%)
Query: 199 KWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKVVFLENYRVTLAELI 258
K+ + + GGK+APGYY AK IIKLI VA +VNND + LKVVF+ +Y V+ AE+I
Sbjct: 642 KYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEII 701
Query: 259 IPAADLSEQISTAGTEASGTGNMKFMI 285
IPA+DLSE ISTAGTEASGT NMKF++
Sbjct: 702 IPASDLSEHISTAGTEASGTSNMKFVM 728
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 171 bits (434), Expect = 4e-49
Identities = 61/114 (53%), Positives = 81/114 (71%)
Query: 3 AELIIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEMGNDNIFIFG 62
AE +IPAAD+SEQISTAG EASGTGNMK LNGALT+GTLDGANVE+AE++G +NIFIFG
Sbjct: 618 AEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFG 677
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENPDEFKDLSDILL 116
TV+QV+ + KGYD + + L V+ ++ +G +S + F + +
Sbjct: 678 HTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIG 731
Score = 129 bits (326), Expect = 2e-34
Identities = 57/101 (56%), Positives = 69/101 (68%)
Query: 185 LITIFLIEERTAKGKWHTRTIMIGGKAAPGYYTAKKIIKLICSVARVVNNDPDVGDKLKV 244
++ ++ + R + G KAAPGYY AK II I VA V+NNDP VGDKLKV
Sbjct: 548 ILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKV 607
Query: 245 VFLENYRVTLAELIIPAADLSEQISTAGTEASGTGNMKFMI 285
VFL +Y V+ AE +IPAAD+SEQISTAG EASGTGNMK +
Sbjct: 608 VFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLAL 648
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 26.9 bits (58), Expect = 2.1
Identities = 16/176 (9%), Positives = 37/176 (21%), Gaps = 19/176 (10%)
Query: 63 MTVDQVEELKKKGYDAPSYYNANPELKLVVDQITNGFFSPENP----------DEFKDLS 112
M + ++ K +N +K++ F + P +
Sbjct: 1 MDISVIDATKVNTETGLHIGESNAPVKMIE------FINVRCPYCRKWFEESEELLAQSV 54
Query: 113 DILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSSHRDISTSTSSSGQVE 172
+ V+ P + + +V
Sbjct: 55 KSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVA 114
Query: 173 SSFPETGQKFAALITIFLIEERTAKGKWH---TRTIMIGGKAAPGYYTAKKIIKLI 225
+ + + H TI+IG T +++ I
Sbjct: 115 TYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEYIFDESVTEEELRGYI 170
>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
protein FhuD {Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.4 bits (57), Expect = 4.0
Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 1/124 (0%)
Query: 39 IGTLDGANVEMAEEMGNDNIFIFGMTVDQVEELKKKGYDAPSYYNANPE-LKLVVDQITN 97
+G N+E+ EM + E L + ++ + L + +T
Sbjct: 49 VGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTE 108
Query: 98 GFFSPENPDEFKDLSDILLKWDRPGAIPLKGPVPTTQLVLRWASSGRWPVTFMEHFRGSS 157
+ + R L+ V
Sbjct: 109 MADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEI 168
Query: 158 HRDI 161
+
Sbjct: 169 LDEY 172
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.384
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,073,314
Number of extensions: 51432
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 9
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)