BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17286
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 188/309 (60%), Gaps = 75/309 (24%)
Query: 60 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAV 119
MS SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ V
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 120 RDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN---------------------- 157
RD+LV RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 158 --------------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEP 185
+M LG+ + Y QKI G Q EE
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 186 DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIAN 234
DDWLRYGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ N
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 235 TRYLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQE 287
T L F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQE
Sbjct: 241 TMRLWSAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQE 297
Query: 288 YFMCAATLQ 296
YF+ AATLQ
Sbjct: 298 YFVVAATLQ 306
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 86/174 (49%), Gaps = 59/174 (33%)
Query: 1 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM 60
MS SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 61 SVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVR 120
R + R I T + Y+ + R YY +L +
Sbjct: 61 ---------RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--- 90
Query: 121 DNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 91 -----------------------------YMGRTLQNTMVNLALENACDEATYQ 115
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 284 bits (726), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 186/304 (61%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 4 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 63
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 64 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 123
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 124 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 183
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 184 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 243
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 244 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 300
Query: 293 ATLQ 296
ATLQ
Sbjct: 301 ATLQ 304
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 4 SDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 58
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 59 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 88
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 89 ------------------------YMGRTLQNTMVNLALENACDEATYQ 113
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 185/304 (60%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 83/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 185/304 (60%), Gaps = 75/304 (24%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV
Sbjct: 5 SDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN--------------------------- 157
RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 65 GRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEE 124
Query: 158 ---------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
+M LG+ + Y QKI G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL 239
YGNPWEKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 185 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLW 244
Query: 240 -------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 292
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ A
Sbjct: 245 SAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVA 301
Query: 293 ATLQ 296
ATLQ
Sbjct: 302 ATLQ 305
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 83/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 5 SDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+ + R YY +L +
Sbjct: 60 ----RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF-------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 90 ------------------------YMGRTLQNTMVNLALENACDEATYQ 114
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/309 (52%), Positives = 186/309 (60%), Gaps = 75/309 (24%)
Query: 60 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAV 119
MS SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ V
Sbjct: 1 MSRPLSDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 120 RDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQN---------------------- 157
RD+LV RWIRTQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 158 --------------------------TMINLGIQSAIDEAMY------QKIKNGEQTEEP 185
+M LG+ + Y QKI G Q EE
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEA 180
Query: 186 DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIAN 234
DDWLRYGNPWEKARPE+ +PV+FYG V +G K+ L P ++++ N
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 235 TRYLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQE 287
T L F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQE
Sbjct: 241 TMRLWSAKAPNDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQE 297
Query: 288 YFMCAATLQ 296
YF+ AATLQ
Sbjct: 298 YFVVAATLQ 306
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 85/174 (48%), Gaps = 59/174 (33%)
Query: 1 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM 60
MS SD +KRKQI VRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + +
Sbjct: 1 MSRPLSDQEKRKQIXVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 61 SVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVR 120
R + R I T + Y+ + R YY +L +
Sbjct: 61 ---------RDHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--- 90
Query: 121 DNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 91 -----------------------------YMGRTLQNTMVNLALENACDEATYQ 115
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/299 (53%), Positives = 182/299 (60%), Gaps = 75/299 (25%)
Query: 70 RKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIR 129
RKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIR
Sbjct: 1 RKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIR 60
Query: 130 TQQHYFENDPKRVYYLSLEYYMGRSLQN-------------------------------- 157
TQQHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 TQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDA 120
Query: 158 ----------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPW 195
+M LG+ + Y QKI G Q EE DDWLRYGNPW
Sbjct: 121 GLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPW 180
Query: 196 EKARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL----- 239
EKARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 181 EKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP 240
Query: 240 --FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 NDFNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 296
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 80/164 (48%), Gaps = 59/164 (35%)
Query: 11 RKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKR 70
RKQISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R
Sbjct: 1 RKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------R 51
Query: 71 KQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRT 130
+ R I T + Y+ + R YY +L +
Sbjct: 52 DHLVGRWI------RTQQHYYEKD------------PKRIYYLSLEF------------- 80
Query: 131 QQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 81 -------------------YMGRTLQNTMVNLALENACDEATYQ 105
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 180/297 (60%), Gaps = 75/297 (25%)
Query: 72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQN---------------------------------- 157
QHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 158 --------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEK 197
+M LG+ + Y QKI G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 198 ARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL------- 239
ARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240
Query: 240 FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 FNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 294
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 78/162 (48%), Gaps = 59/162 (36%)
Query: 13 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQ 72
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------RDH 51
Query: 73 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
+ R I T + Y+ + R YY +L +
Sbjct: 52 LVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--------------- 78
Query: 133 HYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 79 -----------------YMGRTLQNTMVNLALENACDEATYQ 103
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 180/297 (60%), Gaps = 75/297 (25%)
Query: 72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQN---------------------------------- 157
QHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 158 --------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEK 197
+M LG+ + Y QKI G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 198 ARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL------- 239
ARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240
Query: 240 FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 FNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 294
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 78/162 (48%), Gaps = 59/162 (36%)
Query: 13 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQ 72
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------RDH 51
Query: 73 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
+ R I T + Y+ + R YY +L +
Sbjct: 52 LVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--------------- 78
Query: 133 HYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 79 -----------------YMGRTLQNTMVNLALENACDEATYQ 103
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 180/297 (60%), Gaps = 75/297 (25%)
Query: 72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQN---------------------------------- 157
QHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 158 --------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEK 197
+M LG+ + Y QKI G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 198 ARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL------- 239
ARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240
Query: 240 FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 FNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 294
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 78/162 (48%), Gaps = 59/162 (36%)
Query: 13 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQ 72
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------RDH 51
Query: 73 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
+ R I T + Y+ + R YY +L +
Sbjct: 52 LVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--------------- 78
Query: 133 HYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 79 -----------------YMGRTLQNTMVNLALENACDEATYQ 103
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 180/297 (60%), Gaps = 75/297 (25%)
Query: 72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQN---------------------------------- 157
QHY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 158 --------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEK 197
+M LG+ + Y QKI G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 198 ARPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL------- 239
ARPE+ +PV+FYGRV +G K+ L P ++++ NT L
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240
Query: 240 FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
F++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 FNLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 294
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 78/162 (48%), Gaps = 59/162 (36%)
Query: 13 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQ 72
QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------RDH 51
Query: 73 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
+ R I T + Y+ + R YY +L +
Sbjct: 52 LVGRWI------RTQQHYYEKD------------PKRIYYLSLEF--------------- 78
Query: 133 HYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 79 -----------------YMGRTLQNTMVNLALENACDEATYQ 103
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 179/296 (60%), Gaps = 75/296 (25%)
Query: 73 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
ISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQQ
Sbjct: 1 ISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQ 60
Query: 133 HYFENDPKRVYYLSLEYYMGRSLQN----------------------------------- 157
HY+E DPKR+YYLSLE+YMGR+LQN
Sbjct: 61 HYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLG 120
Query: 158 -------------TMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEKA 198
+M LG+ + Y QKI G Q EE DDWLRYGNPWEKA
Sbjct: 121 NGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKA 180
Query: 199 RPEYMIPVNFYGRVAEIGKGKKY---SYCLLRP--------KSSIANTRYLL-------F 240
RPE+ +PV+FYGRV +G K+ L P ++++ NT L F
Sbjct: 181 RPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDF 240
Query: 241 SVLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
++ F N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 NLKDF---NVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 293
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 77/161 (47%), Gaps = 59/161 (36%)
Query: 14 ISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQI 73
ISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYF + + R +
Sbjct: 1 ISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV---------RDHL 51
Query: 74 SVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQH 133
R I T + Y+ + R YY +L +
Sbjct: 52 VGRWI------RTQQHYYEKD------------PKRIYYLSLEF---------------- 77
Query: 134 YFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
YMGR+LQNTM+NL +++A DEA YQ
Sbjct: 78 ----------------YMGRTLQNTMVNLALENACDEATYQ 102
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 180/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 5 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 65 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 124
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 185 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 244
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 245 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 304
Query: 296 Q 296
Q
Sbjct: 305 Q 305
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 85/169 (50%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 5 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 60 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 87
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 88 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 114
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 180/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 5 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 65 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 124
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 185 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 244
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 245 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 304
Query: 296 Q 296
Q
Sbjct: 305 Q 305
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 85/169 (50%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 5 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 60 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 87
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 88 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 114
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 180/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 6 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 65
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 66 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 125
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 126 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 185
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 186 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 245
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 246 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 305
Query: 296 Q 296
Q
Sbjct: 306 Q 306
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 85/169 (50%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 6 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 60
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 61 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 88
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 89 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 115
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 180/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 8 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 67
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 68 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 127
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 128 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 187
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 188 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 247
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 248 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 307
Query: 296 Q 296
Q
Sbjct: 308 Q 308
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 85/169 (50%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QIS+RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 8 TDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 62
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 63 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 90
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 91 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 117
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 179/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 5 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 64
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 65 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 124
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 125 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 184
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 185 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 244
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 245 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 304
Query: 296 Q 296
Q
Sbjct: 305 Q 305
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 5 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 59
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 60 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 87
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 88 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 114
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 270 bits (690), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 179/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 7 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 66
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 67 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 126
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 127 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 186
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 187 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 246
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 247 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 306
Query: 296 Q 296
Q
Sbjct: 307 Q 307
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 7 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 61
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 62 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 89
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 90 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 116
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 179/301 (59%), Gaps = 69/301 (22%)
Query: 65 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLV 124
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV
Sbjct: 6 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLV 65
Query: 125 SRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQ---------------------------- 156
RWIRTQQHY++ PKRVYYLSLE+YMGR+LQ
Sbjct: 66 GRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEE 125
Query: 157 --------------------NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLR 190
++M LG+ + Y QKI++G Q EE DDWLR
Sbjct: 126 IEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLR 185
Query: 191 YGNPWEKARPEYMIPVNFYGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVL 243
YGNPWEK+RPE+M+PV+FYG+V G K+ + +L P N +
Sbjct: 186 YGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLW 245
Query: 244 FFPAVND--------GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 295
A ND GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATL
Sbjct: 246 SARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATL 305
Query: 296 Q 296
Q
Sbjct: 306 Q 306
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 84/169 (49%), Gaps = 59/169 (34%)
Query: 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65
+D +KR+QI +RGI VENV +KK FNRHLHFTLVKDRNVAT RDYYF + +
Sbjct: 6 TDQEKRRQIXIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV----- 60
Query: 66 DIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVS 125
R + R I T + Y+++ R YY +L
Sbjct: 61 ----RDHLVGRWI------RTQQHYYDK------------CPKRVYYLSL---------- 88
Query: 126 RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 89 ----------------------EFYMGRTLQNTMINLGLQNACDEAIYQ 115
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/283 (50%), Positives = 165/283 (58%), Gaps = 69/283 (24%)
Query: 83 NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRV 142
NV +KK FNRHLHFTLVKDRNVAT RDYYFALA+ VRD+LV RWIRTQQHY++ PKRV
Sbjct: 1 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRV 60
Query: 143 YYLSLEYYMGRSLQ---------------------------------------------- 156
YYLSLE+YMGR+LQ
Sbjct: 61 YYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAAC 120
Query: 157 --NTMINLGIQSAIDEAMY------QKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNF 208
++M LG+ + Y QKI++G Q EE DDWLRYGNPWEK+RPE+M+PV+F
Sbjct: 121 FLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHF 180
Query: 209 YGRVAEIGKGKKY--SYCLL-----RPKSSIANTRYLLFSVLFFPAVND--------GDY 253
YG+V G K+ + +L P N + A ND GDY
Sbjct: 181 YGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDY 240
Query: 254 IQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
IQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 241 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQ 283
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 70/151 (46%), Gaps = 59/151 (39%)
Query: 24 NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVEN 83
NV +KK FNRHLHFTLVKDRNVAT RDYYF + + R + R I
Sbjct: 1 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV---------RDHLVGRWI----- 46
Query: 84 VTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVY 143
T + Y+++ R YY +L
Sbjct: 47 -RTQQHYYDK------------CPKRVYYLSL---------------------------- 65
Query: 144 YLSLEYYMGRSLQNTMINLGIQSAIDEAMYQ 174
E+YMGR+LQNTMINLG+Q+A DEA+YQ
Sbjct: 66 ----EFYMGRTLQNTMINLGLQNACDEAIYQ 92
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 174 QKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIA 233
QKI +G Q E PD WL GNPWE R E IPV FYG V GK L I
Sbjct: 198 QKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGK----TTLSASQWIG 253
Query: 234 NTRYLL----FSVLFFPA---------------------VNDGDYIQAVLDRNLAENISR 268
R L F V F N+GDY +V + AE+I+
Sbjct: 254 GERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTEFDLNKFNNGDYKNSVAQQQRAESITA 313
Query: 269 VLYPNDNNFGGKELRLKQEYFMCAATLQ 296
VLYPNDN GKELRLKQ+YF CAA+L
Sbjct: 314 VLYPNDNFAQGKELRLKQQYFWCAASLH 341
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 91 FNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYY 150
F H+ TL + Y A + ++RDNLV W +TQQ + DPKRVYYLSLE+
Sbjct: 48 FIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFL 107
Query: 151 MGRSLQNTMINLGIQSAIDEA 171
MGR+L N +IN+ I+ D A
Sbjct: 108 MGRALDNALINMKIEDPEDPA 128
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 79/264 (29%)
Query: 107 TPRDYYFALAYAVRDNL----VSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINL 162
TPR ++ A++ A+ + L ++ + Q+H V Y+S+E+ +GR N ++NL
Sbjct: 30 TPRQWWLAVSEALAEMLRAQPFAKPVANQRH--------VNYISMEFLIGRLTGNNLLNL 81
Query: 163 G-------------------IQSAIDEAM------------------------------- 172
G ++ ID A+
Sbjct: 82 GWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQ 141
Query: 173 ----YQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGK--------GKK 220
Q +G+Q E PDDW R PW + + V G+V + G+ G+
Sbjct: 142 YGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQA 201
Query: 221 YSYCLLRPKSSIANTRYLLFSVLFFP----AVNDGDYIQAVLDRNLAENISRVLYPNDNN 276
+ ++ ++ +A L + P NDGD+++A AE +++VLYPNDN
Sbjct: 202 WDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNA 261
Query: 277 FGGKELRLKQEYFMCAATLQAEVL 300
F GK+LRL Q+YF CA ++ A++L
Sbjct: 262 FEGKKLRLMQQYFQCACSV-ADIL 284
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 79/264 (29%)
Query: 107 TPRDYYFALAYAVRDNL----VSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINL 162
TPR ++ A++ A+ + L ++ + Q+H V Y+S+E+ +GR N ++NL
Sbjct: 30 TPRQWWLAVSEALAEMLRAQPFAKPVANQRH--------VNYISMEFLIGRLTGNNLLNL 81
Query: 163 G-------------------IQSAIDEAM------------------------------- 172
G ++ ID A+
Sbjct: 82 GWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQ 141
Query: 173 ----YQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGK--------GKK 220
Q +G+Q E PDDW R PW + + V G+V + G+ G+
Sbjct: 142 YGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQA 201
Query: 221 YSYCLLRPKSSIANTRYLLFSVLFFP----AVNDGDYIQAVLDRNLAENISRVLYPNDNN 276
+ ++ ++ +A L + P NDGD+++A AE +++VLYPNDN+
Sbjct: 202 WDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNH 261
Query: 277 FGGKELRLKQEYFMCAATLQAEVL 300
GK+LRL Q+YF CA ++ A++L
Sbjct: 262 TAGKKLRLMQQYFQCACSV-ADIL 284
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 79/264 (29%)
Query: 107 TPRDYYFALAYAVRDNL----VSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINL 162
TPR ++ A++ A+ + L ++ + Q+H V Y+S+E+ +GR N ++NL
Sbjct: 31 TPRQWWLAVSEALAEMLRAQPFAKPVANQRH--------VNYISMEFLIGRLTGNNLLNL 82
Query: 163 G-------------------IQSAIDEAM------------------------------- 172
G ++ ID A+
Sbjct: 83 GWYQDVQDSLKAYDINLTDLLEEEIDPALGAGGLGRLAACFLDSMATVGQSATGYGLNYQ 142
Query: 173 ----YQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGK--------GKK 220
Q +G+Q E PDDW R PW + + V G V + G+ G+
Sbjct: 143 YGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGAVTKDGRWEPEFTITGQA 202
Query: 221 YSYCLLRPKSSIANTRYLLFSVLFFP----AVNDGDYIQAVLDRNLAENISRVLYPNDNN 276
+ ++ ++ +A L + P NDGD+++A AE +++VLYPNDN+
Sbjct: 203 WDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNH 262
Query: 277 FGGKELRLKQEYFMCAATLQAEVL 300
GK+LRL Q+YF CA ++ A++L
Sbjct: 263 TAGKKLRLMQQYFQCACSV-ADIL 285
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 79/264 (29%)
Query: 107 TPRDYYFALAYAVRDNL----VSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINL 162
TPR ++ A++ A+ + L ++ + Q+H V Y+S+E+ +GR N ++NL
Sbjct: 30 TPRQWWLAVSEALAEMLRAQPFAKPVANQRH--------VNYISMEFLIGRLTGNNLLNL 81
Query: 163 G-------------------IQSAIDEAM------------------------------- 172
G ++ ID A+
Sbjct: 82 GWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQ 141
Query: 173 ----YQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGK--------GKK 220
Q +G+Q E PDDW R PW + + V G V + G+ G+
Sbjct: 142 YGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGAVTKDGRWEPEFTITGQA 201
Query: 221 YSYCLLRPKSSIANTRYLLFSVLFFP----AVNDGDYIQAVLDRNLAENISRVLYPNDNN 276
+ ++ ++ +A L + P NDGD+++A AE +++VLYPNDN+
Sbjct: 202 WDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNH 261
Query: 277 FGGKELRLKQEYFMCAATLQAEVL 300
GK+LRL Q+YF CA ++ A++L
Sbjct: 262 TAGKKLRLMQQYFQCACSV-ADIL 284
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 245 FPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEV 299
+ A N + A+++R +I RVLYPND + GK+LR++Q+YF +A+LQA +
Sbjct: 220 YDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMI 274
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 104 NVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRS 154
++AT R ++ L+ AV++ + W RT++ Y ++ +Y S E+ MGR+
Sbjct: 26 DLATDRKFWTGLSRAVQERIADDWERTREAY--GAARQQHYFSAEFLMGRA 74
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 41/163 (25%)
Query: 114 ALAYAVRDNLVS---RWIRTQQHYFEN------DPKRVYYLSLEYYMGRSLQNTMINLGI 164
+L + R+ L+S R I + HY N D K +L + +S + +++ G+
Sbjct: 160 SLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFL---FSTNKSFEIKLVDFGL 216
Query: 165 QSAIDEAMYQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYC 224
+ K+ NGE YG + P ++ P E+ SY
Sbjct: 217 SKE-----FYKLNNGEY---------YGMTTKAGTPYFVAP--------EVLNTTNESY- 253
Query: 225 LLRPKSSIANTRYLLFSVLF----FPAVNDGDYIQAVLDRNLA 263
PK + LL +L FP VND D I VL++ L
Sbjct: 254 --GPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLC 294
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 19 IADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGI 78
+ + E++T +KK F R T +K+R++ + + ++ + +D R+ + +R +
Sbjct: 44 VTNSEHMTDLKKKFQRICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREV 103
Query: 79 ADV--ENVTTVKKYFNRHL----HFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQ 132
V E T K + + + H VA P Y + D V R++ Q
Sbjct: 104 PRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQ 163
Query: 133 HYF 135
F
Sbjct: 164 GCF 166
>pdb|2D1H|A Chain A, Crystal Structure Of St1889 Protein From
Thermoacidophilic Archaeon Sulfolobus Tokodaii
pdb|2D1H|B Chain B, Crystal Structure Of St1889 Protein From
Thermoacidophilic Archaeon Sulfolobus Tokodaii
Length = 109
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 1 MSVLKSDIDKRKQISVRGIADVENV--TTVKKYFNRHLHFTLV-----KDRNVATPRDYY 53
++VL ++ K I+ +AD+ + TTV+ + + LV + + + P+ YY
Sbjct: 24 VAVLLKXVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYY 83
Query: 54 FVSSSIMSVLKSDI 67
+SS+I+ +++D+
Sbjct: 84 SISSNILEKIRNDL 97
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRD 121
V+N+ T + + R HFT D V D Y VRD
Sbjct: 189 VKNIQTSESHPLRQFHFTSAPDHGVPDTTDLLINFRYLVRD 229
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 120 RDNLVS---RWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLG 163
RD LV+ RWI TQ H+ D + YL +EYY+G L + G
Sbjct: 112 RDVLVNGDRRWI-TQLHFAFQD-ENYLYLVMEYYVGGDLLTLLSKFG 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,924,494
Number of Sequences: 62578
Number of extensions: 366040
Number of successful extensions: 984
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 107
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)