Query psy17286
Match_columns 300
No_of_seqs 185 out of 734
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099|consensus 100.0 2.3E-93 5E-98 711.0 13.2 240 1-300 1-310 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 6.3E-67 1.4E-71 541.7 18.3 209 91-300 1-283 (794)
3 PRK14986 glycogen phosphorylas 100.0 9.3E-66 2E-70 534.1 20.5 219 81-300 11-299 (815)
4 cd04300 GT1_Glycogen_Phosphory 100.0 2.1E-65 4.5E-70 531.4 18.5 211 88-299 1-285 (797)
5 PRK14985 maltodextrin phosphor 100.0 5.8E-65 1.3E-69 526.8 19.3 213 81-299 4-287 (798)
6 PF00343 Phosphorylase: Carboh 100.0 2.3E-46 4.9E-51 385.3 4.7 124 175-300 59-200 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 5.3E-46 1.2E-50 383.5 6.2 188 83-300 5-254 (750)
8 TIGR02094 more_P_ylases alpha- 99.6 1.8E-15 3.9E-20 155.4 5.4 130 142-298 1-155 (601)
9 cd04299 GT1_Glycogen_Phosphory 99.4 8.2E-14 1.8E-18 146.8 5.4 128 140-298 86-242 (778)
10 KOG2099|consensus 97.8 9.6E-06 2.1E-10 83.7 3.1 66 60-129 1-66 (843)
11 PRK14986 glycogen phosphorylas 92.8 0.032 7E-07 60.3 0.2 42 23-64 12-53 (815)
12 PRK14985 maltodextrin phosphor 90.5 0.042 9.1E-07 59.3 -2.1 43 23-65 5-47 (798)
13 PF11897 DUF3417: Protein of u 83.5 0.66 1.4E-05 39.1 1.7 44 109-155 73-118 (118)
14 cd04300 GT1_Glycogen_Phosphory 65.9 1.6 3.5E-05 47.5 -0.7 33 29-61 1-33 (797)
15 TIGR02093 P_ylase glycogen/sta 64.0 1.9 4E-05 47.1 -0.6 30 32-61 1-30 (794)
16 COG0058 GlgP Glucan phosphoryl 60.8 2.3 5E-05 46.1 -0.6 103 24-154 5-109 (750)
17 KOG0605|consensus 50.5 9.3 0.0002 40.1 1.8 37 138-174 211-249 (550)
18 KOG3928|consensus 36.6 25 0.00054 36.2 2.3 108 30-146 322-446 (461)
19 PF00479 G6PD_N: Glucose-6-pho 31.6 48 0.001 29.7 3.1 81 54-147 31-113 (183)
20 PF08664 YcbB: YcbB domain; I 27.0 3.4E+02 0.0073 23.6 7.4 88 70-174 4-97 (134)
21 KOG0117|consensus 25.2 42 0.0009 34.9 1.7 43 9-56 257-299 (506)
22 PF10440 WIYLD: Ubiquitin-bind 23.9 1.6E+02 0.0035 22.7 4.3 60 60-122 1-61 (65)
23 PF12732 YtxH: YtxH-like prote 23.2 95 0.0021 23.5 3.0 22 56-77 14-35 (74)
24 PRK10359 lipopolysaccharide co 23.0 64 0.0014 30.2 2.4 61 143-213 118-183 (232)
25 PF02037 SAP: SAP domain; Int 23.0 1.2E+02 0.0026 20.0 3.1 32 64-95 4-35 (35)
No 1
>KOG2099|consensus
Probab=100.00 E-value=2.3e-93 Score=711.00 Aligned_cols=240 Identities=71% Similarity=1.104 Sum_probs=234.0
Q ss_pred CCCCCCchhhhcceeeeccccccchHHHHHhhhcccceEEecccCCCCccceeeeeccccccccCcHhhhhhhhhhccCC
Q psy17286 1 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIAD 80 (300)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
|+.|++|+++|||||+|||++|+||+++|++||||||||+||||||+||||||||+|
T Consensus 1 ~~~~~~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a----------------------- 57 (843)
T KOG2099|consen 1 MSKPLIDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALA----------------------- 57 (843)
T ss_pred CCccccccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHH-----------------------
Confidence 789999999999999999999999999999999999999999999999999998877
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHH
Q psy17286 81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMI 160 (300)
Q Consensus 81 ~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLi 160 (300)
.+|||.++.+|++|+++|++.++||||||||||||||+|+|.++
T Consensus 58 ------------------------------------~tvRD~Lv~~W~rTqqhy~~~dpKrvYYLSlEf~mGRaL~Ntm~ 101 (843)
T KOG2099|consen 58 ------------------------------------HTVRDHLVGRWIRTQQHYYEKDPKRVYYLSLEFYMGRALQNTMI 101 (843)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHhccCCceeeEeehHHhhhhHHHHHHH
Confidence 48999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecCc
Q psy17286 161 NLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEPD 186 (300)
Q Consensus 161 NLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~PD 186 (300)
||||.+.|.|||.+ +|.+|||+|.||
T Consensus 102 Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~~d 181 (843)
T KOG2099|consen 102 NLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEEPD 181 (843)
T ss_pred hccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccchH
Confidence 99999999999998 999999999999
Q ss_pred ccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee---------cC--CCCcceeeEeecee-----cCCcCcCC
Q psy17286 187 DWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL---------RP--KSSIANTRYLLFSV-----LFFPAVND 250 (300)
Q Consensus 187 ~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~---------~P--~~~tVNtLRL~WsA-----Fdl~~fn~ 250 (300)
+||++|||||+.|||.++||+|||+|+..++|.+|++++. +| +|++|||||| ||| |||..||.
T Consensus 182 dWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n~vntlRL-Wsaka~~df~l~~fN~ 260 (843)
T KOG2099|consen 182 DWLRYGNPWEKARPEVMLPVHFYGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNNTVNTLRL-WSAKAPNDFDLKDFNV 260 (843)
T ss_pred HHHHcCCchhhcCcceEeEEEEEEEEEeCCCcceeecceeEEEeccCCCCCCcccCcceeeee-eccCCCCCCCHHhccC
Confidence 9999999999999999999999999999999999999998 34 8999999999 999 99999999
Q ss_pred chhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 251 GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 251 GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
|||++||.+++.||+||+||||||+..+||+||||||||+|||||||||+
T Consensus 261 Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIir 310 (843)
T KOG2099|consen 261 GDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIR 310 (843)
T ss_pred chHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=6.3e-67 Score=541.68 Aligned_cols=209 Identities=50% Similarity=0.792 Sum_probs=199.5
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHHhcCcHHHHHH
Q psy17286 91 FNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDE 170 (300)
Q Consensus 91 ~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLiNLGl~~~vke 170 (300)
|.+||.+++|+++++||+.++|.|||.+|||+++++|.+|++.|.+.++||||||||||||||+|.|||+||||+++|++
T Consensus 1 ~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~nlgl~~~~~~ 80 (794)
T TIGR02093 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFLMGRLLGNNLLNLGLYDEVKE 80 (794)
T ss_pred CHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEEehhhhcchHHHHHHHhCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh------------------------------------------------------cccCCeeeecCcccccCCCCce
Q psy17286 171 AMYQ------------------------------------------------------KIKNGEQTEEPDDWLRYGNPWE 196 (300)
Q Consensus 171 aL~e------------------------------------------------------kI~dG~QvE~PD~WL~~GnPWE 196 (300)
||++ +|+||+|+|.||+||.+|+|||
T Consensus 81 ~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe 160 (794)
T TIGR02093 81 ALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWE 160 (794)
T ss_pred HHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCce
Confidence 9999 8999999999999999999999
Q ss_pred eecCCeeEEEecCCEEEEecC-C---eeeeecee-------cC----CCCcceeeEeecee-----cCCcCcCCchhHHH
Q psy17286 197 KARPEYMIPVNFYGRVAEIGK-G---KKYSYCLL-------RP----KSSIANTRYLLFSV-----LFFPAVNDGDYIQA 256 (300)
Q Consensus 197 i~R~d~~~~V~F~G~v~~~~~-G---~~w~~~~~-------~P----~~~tVNtLRL~WsA-----Fdl~~fn~GdY~~A 256 (300)
++|++.+|+|+|+|+|+...+ | .+|++++. +| +|++|||||| |+| |||+.||.|||.+|
T Consensus 161 ~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRL-W~a~~~~~f~l~~fn~gdy~~a 239 (794)
T TIGR02093 161 IRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRL-WSAEAPEEFDLDAFNAGDYYEA 239 (794)
T ss_pred eecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEE-EEecCccccCHhhccCccHhhh
Confidence 999999999999999986433 5 48999887 23 6889999999 999 99999999999999
Q ss_pred HHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 257 VLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 257 v~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
++.+..+|+||+||||+||+++||+|||||||||||||+||||+
T Consensus 240 ~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir 283 (794)
T TIGR02093 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIR 283 (794)
T ss_pred hhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999963
No 3
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=9.3e-66 Score=534.07 Aligned_cols=219 Identities=40% Similarity=0.711 Sum_probs=208.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHH
Q psy17286 81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMI 160 (300)
Q Consensus 81 ~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLi 160 (300)
..++++|+++|.+||++++|+++++|++.++|.|||.+|||+++++|.+|++.|.+.++||||||||||||||+|.|||+
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~ 90 (815)
T PRK14986 11 TLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALL 90 (815)
T ss_pred CCCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcEEEEEchhhhccHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecCc
Q psy17286 161 NLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEPD 186 (300)
Q Consensus 161 NLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~PD 186 (300)
|||+++++++||++ +|+||+|+|.||
T Consensus 91 nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~pd 170 (815)
T PRK14986 91 SLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPD 170 (815)
T ss_pred hcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEcCC
Confidence 99999999999999 899999999999
Q ss_pred ccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee---c------C--CCCcceeeEeecee-----cCCcCcCC
Q psy17286 187 DWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL---R------P--KSSIANTRYLLFSV-----LFFPAVND 250 (300)
Q Consensus 187 ~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~---~------P--~~~tVNtLRL~WsA-----Fdl~~fn~ 250 (300)
+|+.+|+|||+.|++.+++|+|+|+++..+.-.+|+++++ + | +|++|||||| |+| ||+..||.
T Consensus 171 ~w~~~~~pwe~~r~~~~~~V~f~g~~~~~g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRL-W~a~~~~~fd~~~fn~ 249 (815)
T PRK14986 171 YWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTDATNTLRL-WSAQASSEINLGKFNQ 249 (815)
T ss_pred CccCCCCceeEecCCcEEEEEeCCEEEecCceeEeeCCeeEEEEeCCccccCCCCCceEEEEE-EEeecCcccCHhhccc
Confidence 9999999999999999999999999975421258998776 3 3 7899999999 999 99999999
Q ss_pred chhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 251 GDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 251 GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
|+|..|+.+++.+|+||+||||+|++++||+|||||||||||||+||||+
T Consensus 250 g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r 299 (815)
T PRK14986 250 GDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILS 299 (815)
T ss_pred ccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999963
No 4
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=2.1e-65 Score=531.43 Aligned_cols=211 Identities=54% Similarity=0.855 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHHhcCcHHH
Q psy17286 88 KKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSA 167 (300)
Q Consensus 88 k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLiNLGl~~~ 167 (300)
++.|.+||.+++|+++++||+.++|.|||.+|||+++++|.+|+++|.+.++||||||||||||||+|.|||+||||+++
T Consensus 1 ~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~L~nnl~nLgl~~~ 80 (797)
T cd04300 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSLEFLMGRLLGNNLLNLGLYDE 80 (797)
T ss_pred ChHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEchhhhcchHHHHHHHhCCcHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh------------------------------------------------------cccCCeeeecCcccccCCC
Q psy17286 168 IDEAMYQ------------------------------------------------------KIKNGEQTEEPDDWLRYGN 193 (300)
Q Consensus 168 vkeaL~e------------------------------------------------------kI~dG~QvE~PD~WL~~Gn 193 (300)
|+|||++ +|.+|+|+|.||+|+.+|+
T Consensus 81 ~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~ 160 (797)
T cd04300 81 VREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGN 160 (797)
T ss_pred HHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCC
Confidence 9999999 8999999999999999999
Q ss_pred CceeecCCeeEEEecCCEEEEecC-C---eeeeecee-------cC----CCCcceeeEeecee-----cCCcCcCCchh
Q psy17286 194 PWEKARPEYMIPVNFYGRVAEIGK-G---KKYSYCLL-------RP----KSSIANTRYLLFSV-----LFFPAVNDGDY 253 (300)
Q Consensus 194 PWEi~R~d~~~~V~F~G~v~~~~~-G---~~w~~~~~-------~P----~~~tVNtLRL~WsA-----Fdl~~fn~GdY 253 (300)
|||++|++.+|+|+|+|+++...+ | .+|++++. +| +|++||+||| |+| ||+..||+|||
T Consensus 161 pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRL-W~a~~~~~~dl~~fn~gdy 239 (797)
T cd04300 161 PWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRL-WSAEASEEFDLDAFNRGDY 239 (797)
T ss_pred CceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEE-EEeeCCCCcCHHHhcCCch
Confidence 999999999999999999985432 5 48998776 23 6889999999 999 99999999999
Q ss_pred HHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhh
Q psy17286 254 IQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEV 299 (300)
Q Consensus 254 ~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi 299 (300)
.+|++.+..+|+||+||||+||+++||+|||||||||||||+||||
T Consensus 240 ~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdil 285 (797)
T cd04300 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDII 285 (797)
T ss_pred hhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999997
No 5
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=5.8e-65 Score=526.79 Aligned_cols=213 Identities=28% Similarity=0.515 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHH
Q psy17286 81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMI 160 (300)
Q Consensus 81 ~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLi 160 (300)
..++++|++.|.+||.+++|+++++||+.++|.|||.+|||+|+++ ++.|.+.++|+||||||||||||+|.|||+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~----~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~ 79 (798)
T PRK14985 4 IFNKKQFQAALTRQWQRFGLNSAAEMTPRQWWQAVSAALAELLRAQ----PAAKPVANQRHVNYISMEFLIGRLTGNNLL 79 (798)
T ss_pred CCCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHH----HHHHhhcCCcEEEEechhhhccHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999 677888999999999999999999999999
Q ss_pred hcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecCc
Q psy17286 161 NLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEPD 186 (300)
Q Consensus 161 NLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~PD 186 (300)
|||++++++|||++ +|.||+|+|.||
T Consensus 80 nlgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd 159 (798)
T PRK14985 80 NLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPD 159 (798)
T ss_pred hcCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCC
Confidence 99999999999999 899999999999
Q ss_pred ccccCCCCceeecCCeeEEEecCCEEEEecCC-eeeeecee-------cC----CCCcceeeEeecee-----cCCcCcC
Q psy17286 187 DWLRYGNPWEKARPEYMIPVNFYGRVAEIGKG-KKYSYCLL-------RP----KSSIANTRYLLFSV-----LFFPAVN 249 (300)
Q Consensus 187 ~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G-~~w~~~~~-------~P----~~~tVNtLRL~WsA-----Fdl~~fn 249 (300)
+|+..|+|||++|++..++|+|+|+|+.. +| ..|++++. +| +|++||+||| |+| |||..||
T Consensus 160 ~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRL-W~a~~~~~~~l~~fn 237 (798)
T PRK14985 160 DWHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRL-WQATHAHPFDLTKFN 237 (798)
T ss_pred CcccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEE-eEcCCCCccCHHHcC
Confidence 99999999999999999999999999755 56 58998885 33 7899999999 999 9999999
Q ss_pred CchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhh
Q psy17286 250 DGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEV 299 (300)
Q Consensus 250 ~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi 299 (300)
.|||.+|++.+..+|+||+||||+|++++||+|||||||||||||+||||
T Consensus 238 ~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdil 287 (798)
T PRK14985 238 DGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADIL 287 (798)
T ss_pred CcchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=2.3e-46 Score=385.32 Aligned_cols=124 Identities=49% Similarity=0.792 Sum_probs=114.0
Q ss_pred cccCCeeeecCcccccCCCCceeecCCeeEEEecCCEEEEecCC--eeeeecee-------cC----CCCcceeeEeece
Q psy17286 175 KIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKG--KKYSYCLL-------RP----KSSIANTRYLLFS 241 (300)
Q Consensus 175 kI~dG~QvE~PD~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G--~~w~~~~~-------~P----~~~tVNtLRL~Ws 241 (300)
+|+||+|||.||+||++|||||++||+.+|+|+|||+|+. .+| .+|+++++ +| +|++|||||| |+
T Consensus 59 ~i~dG~QvE~pd~Wl~~g~pWe~~r~~~~~~V~f~G~v~~-~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRL-w~ 136 (713)
T PF00343_consen 59 KIVDGWQVELPDNWLRYGNPWEIRRPDESYEVKFGGRVED-DGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRL-WS 136 (713)
T ss_dssp EEETTEEEEEEEBTTTTG-TTSEEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEE-EE
T ss_pred EeecCCcccCCCCccCCCCceEEecCCceEEEeccceEEe-cCCCcccccCCeEEEEEecCceeecCCCCceEEEEE-ec
Confidence 9999999999999999999999999999999999999983 233 59999998 33 8999999999 99
Q ss_pred e-----cCCcCcCCchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 242 V-----LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 242 A-----Fdl~~fn~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
| |||..||.|||.+|+++++.+|+||+|||||||+++||+||||||||||||||||||+
T Consensus 137 a~~~~~fd~~~fn~gdy~~a~~~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir 200 (713)
T PF00343_consen 137 AEPSEEFDLESFNRGDYIKAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIR 200 (713)
T ss_dssp EEESSSTTHHHHHTTCHHHHHHHHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccChhhcCCCcHHHHHHHHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999984
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-46 Score=383.52 Aligned_cols=188 Identities=40% Similarity=0.608 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHHhc
Q psy17286 83 NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINL 162 (300)
Q Consensus 83 ~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLiNL 162 (300)
+.++|+.+|..++....|+++..|++++||.|++..||+.+...|.+|++.+.+.+.|+|||||||||+||+|+|||+||
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~yy~s~efL~grl~~~~l~n~ 84 (750)
T COG0058 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVYYLSMEFLIGRLLGNNLWNL 84 (750)
T ss_pred cHHHHHHHHHHHHHHHhccChhhCCHHHHHHHhhHHHHHHHhcCHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcchhhh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHh-----------------------------------------------------cccCCeeeecCcccc
Q psy17286 163 GIQSAIDEAMYQ-----------------------------------------------------KIKNGEQTEEPDDWL 189 (300)
Q Consensus 163 Gl~~~vkeaL~e-----------------------------------------------------kI~dG~QvE~PD~WL 189 (300)
|+++.++++|++ +|+||||+|.||.|+
T Consensus 85 g~~~~~~~~l~~~~~~~~e~~~~e~~p~lgGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~ 164 (750)
T COG0058 85 GIYDDVQEALKELGYFLMEFGEHESDPGLGGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWL 164 (750)
T ss_pred cchHHHHhhHHhhhccHHHHhhcccCccccccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhh
Confidence 999999999998 799999999999999
Q ss_pred cCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee-cC--CCCcceeeEeecee------cCCcCcCCchhHHHHHHH
Q psy17286 190 RYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL-RP--KSSIANTRYLLFSV------LFFPAVNDGDYIQAVLDR 260 (300)
Q Consensus 190 ~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~-~P--~~~tVNtLRL~WsA------Fdl~~fn~GdY~~Av~~k 260 (300)
.+|||||+.|+.. | +++.+ || +| +|||||| |+| |+|..||.| +++
T Consensus 165 ~~~~pwe~~r~~~-------a-----------~~~d~~V~g~~~-~~~~lrl-W~a~~~~~~~~l~~~n~~------e~~ 218 (750)
T COG0058 165 KYGNPWEFLRDAE-------G-----------VPYDVPVPGYDN-RVVTLRL-WQAQVGRVPLYLLDFNVG------ENK 218 (750)
T ss_pred ccCCcceeecccC-------C-----------ceeeeeEEeccC-cEEEEEE-EEEecCccceEeecCCCc------ccc
Confidence 9999999999732 2 12222 44 55 9999999 999 778899999 778
Q ss_pred HhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 261 NLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 261 ~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
..+++||+||||+|| ++|||+|||||||||+|||++
T Consensus 219 ~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~ 254 (750)
T COG0058 219 NDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILA 254 (750)
T ss_pred hhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHH
Confidence 899999999999999 999999999999999999974
No 8
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.57 E-value=1.8e-15 Score=155.44 Aligned_cols=130 Identities=22% Similarity=0.175 Sum_probs=94.5
Q ss_pred EEEEeeccccCchHHHHHHhcCcHHHHH-HHHHh-------------------ccc-CCeeeecCcccccCCCCceeecC
Q psy17286 142 VYYLSLEYYMGRSLQNTMINLGIQSAID-EAMYQ-------------------KIK-NGEQTEEPDDWLRYGNPWEKARP 200 (300)
Q Consensus 142 VYYLSmEFLmGR~L~NNLiNLGl~~~vk-eaL~e-------------------kI~-dG~QvE~PD~WL~~GnPWEi~R~ 200 (300)
|-||||||=+--+|..-=--||++.-+. +++++ +|. ||+|+|.||+|+.++.||+...
T Consensus 1 ~ayf~~E~g~~~~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~- 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL- 79 (601)
T ss_pred CeEEeeccccCCCCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe-
Confidence 4699999988877765555566665432 23333 786 9999999999999999999821
Q ss_pred CeeEEEecCCEEEEecCCeeeeeceecCCCCcceeeEeecee----cCCcCcCCchhHHHHHHHHhhhcccccccCCCCC
Q psy17286 201 EYMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSV----LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNN 276 (300)
Q Consensus 201 d~~~~V~F~G~v~~~~~G~~w~~~~~~P~~~tVNtLRL~WsA----Fdl~~fn~GdY~~Av~~k~~aE~IS~VLYPnDs~ 276 (300)
..+| .|+... +|=.++++++|| |++ +++-.++.+. .+....++.||++|||+|
T Consensus 80 --------------~~~g-~~~~~~-v~i~g~~~~~rl-w~~~~~~v~lylld~~~----~~n~~~~R~it~~LY~~D-- 136 (601)
T TIGR02094 80 --------------DTDG-KWLKIS-VRIRGRDVYAKV-WRVQVGRVPLYLLDTNI----PENSEDDRWITGRLYGGD-- 136 (601)
T ss_pred --------------cCCC-CeEEEE-EecCCcEEEEEE-EEEEeCCCCEEEecCCC----cccchhhcCccCCCCCCC--
Confidence 1122 123222 331126889999 999 6664454553 455567799999999988
Q ss_pred cccchhhcccchhhhHhhhhhh
Q psy17286 277 FGGKELRLKQEYFMCAATLQAE 298 (300)
Q Consensus 277 ~~GKeLRLkQQYFfvSAslQDI 298 (300)
+++||+|||||++|++|+|
T Consensus 137 ---~~~R~~Qe~fl~~a~l~~l 155 (601)
T TIGR02094 137 ---KEMRIAQEIVLGIGGVRAL 155 (601)
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999987
No 9
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.43 E-value=8.2e-14 Score=146.80 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=92.7
Q ss_pred ceEEEEeeccccCchHHHHHHhcCcHHHHH-HHHHh-------------------ccc-CCeeeecCcccccCCCCceee
Q psy17286 140 KRVYYLSLEYYMGRSLQNTMINLGIQSAID-EAMYQ-------------------KIK-NGEQTEEPDDWLRYGNPWEKA 198 (300)
Q Consensus 140 KrVYYLSmEFLmGR~L~NNLiNLGl~~~vk-eaL~e-------------------kI~-dG~QvE~PD~WL~~GnPWEi~ 198 (300)
+.+-||||||=+.-+|-..=--||++.-+. +++++ +|. ||+|+|.|+.|...+.||+..
T Consensus 86 ~~~aYFs~E~gl~~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 86 LVAAYFSMEFGLHESLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred CeeEEeccccccCCCCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 344499999999988887666677764332 22222 776 999999999999999999984
Q ss_pred cCC----eeEEEecCCEEEEecCCeeeeeceecCCCCcceeeEeecee----cCCcCcCCchhHHHHHHHHhhhcccccc
Q psy17286 199 RPE----YMIPVNFYGRVAEIGKGKKYSYCLLRPKSSIANTRYLLFSV----LFFPAVNDGDYIQAVLDRNLAENISRVL 270 (300)
Q Consensus 199 R~d----~~~~V~F~G~v~~~~~G~~w~~~~~~P~~~tVNtLRL~WsA----Fdl~~fn~GdY~~Av~~k~~aE~IS~VL 270 (300)
+.+ ..+.|.+ |+ . ..++|+ |.+ +++-.++.+.| +.....+.||..|
T Consensus 166 ~~~~G~~~~v~v~l-------------------~g-~-~v~~rv-w~~~vg~v~lylLDtd~~----~n~~~~R~iT~~L 219 (778)
T cd04299 166 RDADGEPVRVSVEL-------------------PG-R-TVYARV-WKAQVGRVPLYLLDTDIP----ENSPDDRGITDRL 219 (778)
T ss_pred ecCCCCeEEEEEee-------------------CC-C-ceEEEE-EEEEcCCCCEEEecCCcc----ccchhhcccccCC
Confidence 432 1222222 22 2 237999 999 66644555654 3344568999999
Q ss_pred cCCCCCcccchhhcccchhhhHhhhhhh
Q psy17286 271 YPNDNNFGGKELRLKQEYFMCAATLQAE 298 (300)
Q Consensus 271 YPnDs~~~GKeLRLkQQYFfvSAslQDI 298 (300)
||+| +++||+|||||+.|+++.+
T Consensus 220 Yg~D-----~~~Rl~Qe~~Lg~agl~~L 242 (778)
T cd04299 220 YGGD-----QETRIQQEILLGIGGVRAL 242 (778)
T ss_pred CCCc-----HHHHHHHHHHHHHHHHHHH
Confidence 9987 7999999999999999976
No 10
>KOG2099|consensus
Probab=97.84 E-value=9.6e-06 Score=83.70 Aligned_cols=66 Identities=67% Similarity=0.938 Sum_probs=60.4
Q ss_pred cccccCcHhhhhhhhhhccCCCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17286 60 MSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIR 129 (300)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~ 129 (300)
|++|++|+++|+|||++|++.+.++.+++++|.+|+++++.+++..++++++|. ++-..+-++-.-
T Consensus 1 ~~~~~~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yf----A~a~tvRD~Lv~ 66 (843)
T KOG2099|consen 1 MSKPLIDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYF----ALAHTVRDHLVG 66 (843)
T ss_pred CCccccccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHH----HHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999996 777767666543
No 11
>PRK14986 glycogen phosphorylase; Provisional
Probab=92.82 E-value=0.032 Score=60.29 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=36.5
Q ss_pred cchHHHHHhhhcccceEEecccCCCCccceeeeecccccccc
Q psy17286 23 ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLK 64 (300)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (300)
-++.+++++|.+||||++.||+..||++|+|.|||.+.-..+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l 53 (815)
T PRK14986 12 LSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRL 53 (815)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999995544333
No 12
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=90.46 E-value=0.042 Score=59.32 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=36.8
Q ss_pred cchHHHHHhhhcccceEEecccCCCCccceeeeeccccccccC
Q psy17286 23 ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKS 65 (300)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (300)
=++.++|++|.+|||+++.||+..||++|+|.|+|.+.-.-+.
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~ 47 (798)
T PRK14985 5 FNKKQFQAALTRQWQRFGLNSAAEMTPRQWWQAVSAALAELLR 47 (798)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999955443333
No 13
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=83.47 E-value=0.66 Score=39.14 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCceEEEEeeccccCchH
Q psy17286 109 RDYYFALAYAVRDNLVS--RWIRTQQHYFENDPKRVYYLSLEYYMGRSL 155 (300)
Q Consensus 109 ~d~Y~ALA~~VRD~l~~--~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L 155 (300)
...|.++....+++|.. .|..+ ......+.|-||||||=++-+|
T Consensus 73 l~~~~~v~~~f~~Ym~~~~~W~~~---~~~~~~~~IAYFSmEfGlhesL 118 (118)
T PF11897_consen 73 LARYDRVYARFEEYMSQKPTWFQE---PGDTPNPPIAYFSMEFGLHESL 118 (118)
T ss_pred HHHHHHHHHHHHHHHcCCCccccC---CCCCCCCCEEEEcccccccccC
Confidence 34455555555666644 36554 2333578999999999776554
No 14
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=65.86 E-value=1.6 Score=47.54 Aligned_cols=33 Identities=39% Similarity=0.445 Sum_probs=29.4
Q ss_pred HHhhhcccceEEecccCCCCccceeeeeccccc
Q psy17286 29 KKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMS 61 (300)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (300)
++.|.+||++++.||..-||++|+|.|||.+.-
T Consensus 1 ~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vr 33 (797)
T cd04300 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVR 33 (797)
T ss_pred ChHHHHHHHHHhCCChhhCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999994443
No 15
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=63.95 E-value=1.9 Score=47.06 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=26.9
Q ss_pred hhcccceEEecccCCCCccceeeeeccccc
Q psy17286 32 FNRHLHFTLVKDRNVATPRDYYFVSSSIMS 61 (300)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (300)
|.+||++++.||..-||++|+|.|||.+.-
T Consensus 1 ~~~~l~~~~~~~~~~a~~~~~y~ala~~vr 30 (794)
T TIGR02093 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVR 30 (794)
T ss_pred CHHHHHHHhCCChhhCCHHHHHHHHHHHHH
Confidence 679999999999999999999999995443
No 16
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=60.80 E-value=2.3 Score=46.09 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=62.6
Q ss_pred chHHHHHhhhcccceEEecccCCCCccceeeeeccccccccCcHhhhhhhhhhccCCCCCHHHHHHHHHHHHHHhhCCCC
Q psy17286 24 NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDR 103 (300)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~ 103 (300)
+|..++.+|-.+|-++..|+--.|||+|.|-|++-. ++.-+...-..+.....
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~---------------------------v~~~~~~~~~~~~~~~~ 57 (750)
T COG0058 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNP---------------------------VRELLAADWLRLNQLAR 57 (750)
T ss_pred cHHHHHHHHHHHHHHHhccChhhCCHHHHHHHhhHH---------------------------HHHHHhcCHHHHHHhhc
Confidence 788999999999999999999999999999998711 22222222222222222
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCceEEEEeeccccCch
Q psy17286 104 NVATPRDYYFALAYAVRDNLVSR--WIRTQQHYFENDPKRVYYLSLEYYMGRS 154 (300)
Q Consensus 104 ~~At~~d~Y~ALA~~VRD~l~~~--W~~T~~~y~~~~~KrVYYLSmEFLmGR~ 154 (300)
++ .....|...+.-+-+++..+ |+.....-.....|.+-|+||||+..-.
T Consensus 58 ~~-~~~~~yy~s~efL~grl~~~~l~n~g~~~~~~~~l~~~~~~~~e~~~~e~ 109 (750)
T COG0058 58 DE-DFKQVYYLSMEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHES 109 (750)
T ss_pred ch-hHHHHHHHHHHHHHHHhhhcchhhhcchHHHHhhHHhhhccHHHHhhccc
Confidence 22 22334444444444444433 4444333223334779999999996433
No 17
>KOG0605|consensus
Probab=50.48 E-value=9.3 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCceEEEEeeccccCchHHHHHHhcCcHH--HHHHHHHh
Q psy17286 138 DPKRVYYLSLEYYMGRSLQNTMINLGIQS--AIDEAMYQ 174 (300)
Q Consensus 138 ~~KrVYYLSmEFLmGR~L~NNLiNLGl~~--~vkeaL~e 174 (300)
+.+.=-||-||||+|==+..-|++.|.+. .++--++|
T Consensus 211 QD~~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE 249 (550)
T KOG0605|consen 211 QDKEYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAE 249 (550)
T ss_pred cCCCeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHHH
Confidence 44556689999999999999999999864 34544444
No 18
>KOG3928|consensus
Probab=36.60 E-value=25 Score=36.21 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=63.2
Q ss_pred HhhhcccceEEec--ccCCCCccceeeeec------------cccccccCcHhhhhhhhhhc---cCCCCCHHHHHHHHH
Q psy17286 30 KYFNRHLHFTLVK--DRNVATPRDYYFVSS------------SIMSVLKSDIDKRKQISVRG---IADVENVTTVKKYFN 92 (300)
Q Consensus 30 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~~ 92 (300)
+.||--+|+|.+| |++-.||+|+++.-. ++|...++- ..-+.+| .+.-..-+.+-+.+.
T Consensus 322 D~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~----~~~~a~~h~gv~~y~pr~llg~egf 397 (461)
T KOG3928|consen 322 DNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGV----TTPSAFGHLGVAPYVPRKLLGEEGF 397 (461)
T ss_pred cCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEeccc----ccchhccccccccCCchHhcCccch
Confidence 5688888999987 578899999986422 222222211 1111121 122222345556666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Q psy17286 93 RHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLS 146 (300)
Q Consensus 93 ~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLS 146 (300)
++|+-..-...+.-|+.|.-.- +-=++..+|.. ++.-.+++-|+.||||
T Consensus 398 e~lqpf~pi~v~nYt~~E~~~~----i~YYl~~nwl~-kkv~~Ee~~kql~fLS 446 (461)
T KOG3928|consen 398 EALQPFVPIEVENYTLDEFEAL----IDYYLQSNWLL-KKVPGEENIKQLYFLS 446 (461)
T ss_pred hhccCcCccccCCCCHHHHHHH----HHHHHHhhHHH-hhcCcccchhhhhhhc
Confidence 6666555555666666654322 22234678887 5555578889999999
No 19
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=31.55 E-value=48 Score=29.70 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=48.5
Q ss_pred eeeccccccccCcHhhhhhhhhhccC--CCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17286 54 FVSSSIMSVLKSDIDKRKQISVRGIA--DVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131 (300)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~ 131 (300)
|.+.++.-.+.|+.+-|+.+.-.-.. .....+..-+.|..++.+.-| +++..+-|.+|+..+.+.-. .|
T Consensus 31 ~~Iig~~R~~~~~~~f~~~v~~~l~~~~~~~~~~~~~~~F~~~~~Y~~~----d~~~~~~y~~L~~~l~~~~~-~~---- 101 (183)
T PF00479_consen 31 FRIIGVARSDLSDEEFREKVREALKKFSREEIDEEKWEEFLSRLHYVQG----DYDDPESYAALKKALEELEN-KY---- 101 (183)
T ss_dssp EEEEEEESS--SHHCCHHHHHHCCGG-S-CCCSHHHHHHHHTTEEEEE------SS-HHHHHHHHHHHHHHHH-CT----
T ss_pred cEEEEecCCcCCHHHHHHHHHHHHHhhhccccCHHHHHHHhhccEEEeC----CCCCchhHHHHHHHHHHhhh-hc----
Confidence 34444455677777766666543222 234446777889999888765 24667889999888877443 11
Q ss_pred HHHHhcCCceEEEEee
Q psy17286 132 QHYFENDPKRVYYLSL 147 (300)
Q Consensus 132 ~~y~~~~~KrVYYLSm 147 (300)
.....+|+|||+
T Consensus 102 ----~~~~~rifYLAv 113 (183)
T PF00479_consen 102 ----GTEANRIFYLAV 113 (183)
T ss_dssp ----TTTSEEEEEE-S
T ss_pred ----CCCcceEEEecc
Confidence 256689999994
No 20
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=26.95 E-value=3.4e+02 Score=23.62 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=56.3
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCceEEEEe
Q psy17286 70 RKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVR---DNLVSRWIRTQQHYFENDPKRVYYLS 146 (300)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VR---D~l~~~W~~T~~~y~~~~~KrVYYLS 146 (300)
+.+.+-.|+.+-...+.+.+-+..-+......+....+..+.|..++..-. ..+.+.-....|+
T Consensus 4 ~~iL~~LGI~gE~Gs~Dil~Ii~~l~~~~~~~~~~~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQR------------- 70 (134)
T PF08664_consen 4 QSILSELGIIGEAGSKDILKIIEYLIEQEKSFSQNFPSLKEIFEELAQKKLASDEEIEKEKKAIEQR------------- 70 (134)
T ss_pred HHHHHHhCcccccCHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHhhccchhhhhHHHHHHHHH-------------
Confidence 456677889888887777777666666655555557788999999986541 1112221222222
Q ss_pred eccccCchH---HHHHHhcCcHHHHHHHHHh
Q psy17286 147 LEYYMGRSL---QNTMINLGIQSAIDEAMYQ 174 (300)
Q Consensus 147 mEFLmGR~L---~NNLiNLGl~~~vkeaL~e 174 (300)
+-|+. -+||-|||+.|-..+.+.+
T Consensus 71 ----IRRai~~al~nlAsLGl~Dy~N~~Fe~ 97 (134)
T PF08664_consen 71 ----IRRAIKQALTNLASLGLEDYSNPIFEE 97 (134)
T ss_pred ----HHHHHHHHHHHHHHhCCcccCChHHHH
Confidence 33333 3677889999877777766
No 21
>KOG0117|consensus
Probab=25.21 E-value=42 Score=34.85 Aligned_cols=43 Identities=37% Similarity=0.518 Sum_probs=32.2
Q ss_pred hhhcceeeeccccccchHHHHHhhhcccceEEecccCCCCccceeeee
Q psy17286 9 DKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVS 56 (300)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (300)
.+=|-.-||.|+.--.-.-||+.||+|=-.+= |-++|||=|.=
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR-----Vkk~rDYaFVH 299 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVER-----VKKPRDYAFVH 299 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEE-----eecccceeEEe
Confidence 46677789999876666679999999944443 55789987753
No 22
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.93 E-value=1.6e+02 Score=22.70 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=41.5
Q ss_pred cccccCcHhh-hhhhhhhccCCCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHH
Q psy17286 60 MSVLKSDIDK-RKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDN 122 (300)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~ 122 (300)
|+.|.+-.+| ++++.-|.-.+... ...+....+|-..+|.+ -+.=..+-|.+|+.++-|.
T Consensus 1 Ma~pk~~~~R~daA~dam~~lG~~~--~~v~~vl~~LL~lY~~n-W~lIEed~Y~~L~dai~e~ 61 (65)
T PF10440_consen 1 MAPPKKGNERIDAALDAMRQLGFSK--KQVRPVLKNLLKLYDGN-WELIEEDNYRVLADAIFEE 61 (65)
T ss_pred CCCCCcCcHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCC-chhhhcccHHHHHHHHHHH
Confidence 5666666666 66666665444443 34555666777789988 6666778999999888664
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.20 E-value=95 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.6
Q ss_pred eccccccccCcHhhhhhhhhhc
Q psy17286 56 SSSIMSVLKSDIDKRKQISVRG 77 (300)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~ 77 (300)
.++++..|.|-.|-|+.+.-..
T Consensus 14 ~~glL~aP~sG~e~R~~l~~~~ 35 (74)
T PF12732_consen 14 AAGLLFAPKSGKETREKLKDKA 35 (74)
T ss_pred HHHHHhCCCCcHHHHHHHHHHH
Confidence 4567889999999998887663
No 24
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.01 E-value=64 Score=30.15 Aligned_cols=61 Identities=13% Similarity=0.291 Sum_probs=32.7
Q ss_pred EEEeeccccCchHHHHHH-hcCcHHHHHHHHHh----cccCCeeeecCcccccCCCCceeecCCeeEEEecCCEEE
Q psy17286 143 YYLSLEYYMGRSLQNTMI-NLGIQSAIDEAMYQ----KIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVA 213 (300)
Q Consensus 143 YYLSmEFLmGR~L~NNLi-NLGl~~~vkeaL~e----kI~dG~QvE~PD~WL~~GnPWEi~R~d~~~~V~F~G~v~ 213 (300)
.||-|||+.|..|.+... +..+...+.++|.. .|.+| ==.|.|-+-. ++..+.+-|++...
T Consensus 118 ~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~gi~H~--Dikp~Nili~--------~~gi~liDfg~~~~ 183 (232)
T PRK10359 118 YIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHGMVSG--DPHKGNFIVS--------KNGLRIIDLSGKRC 183 (232)
T ss_pred eEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcCCccC--CCChHHEEEe--------CCCEEEEECCCccc
Confidence 789999999999966521 11122333444444 44443 1234443322 22366777877543
No 25
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.98 E-value=1.2e+02 Score=19.99 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.1
Q ss_pred cCcHhhhhhhhhhccCCCCCHHHHHHHHHHHH
Q psy17286 64 KSDIDKRKQISVRGIADVENVTTVKKYFNRHL 95 (300)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~L 95 (300)
++-.|.|+.-.-+|++...+++++.+.+.+++
T Consensus 4 l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 34567888889999999999999999888775
Done!