Query psy17286
Match_columns 300
No_of_seqs 185 out of 734
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:07:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gj4_A Glycogen phosphorylase, 100.0 1.6E-70 5.5E-75 571.2 20.0 228 72-300 1-298 (824)
2 1ygp_A Yeast glycogen phosphor 100.0 3.7E-67 1.3E-71 545.7 15.7 218 82-300 39-345 (879)
3 1l5w_A Maltodextrin phosphoryl 100.0 5.4E-64 1.8E-68 520.8 9.5 212 80-299 3-284 (796)
4 2c4m_A Glycogen phosphorylase; 100.0 1.9E-62 6.5E-67 509.2 16.7 210 81-299 3-274 (796)
5 2gj4_A Glycogen phosphorylase, 98.0 7.1E-07 2.4E-11 93.9 -0.1 46 13-58 1-46 (824)
6 2c4m_A Glycogen phosphorylase; 94.1 0.0061 2.1E-07 64.2 -1.3 38 23-60 4-41 (796)
7 1l5w_A Maltodextrin phosphoryl 93.5 0.0069 2.4E-07 63.8 -2.2 39 22-60 4-42 (796)
8 1ygp_A Yeast glycogen phosphor 92.3 0.027 9.2E-07 59.8 0.3 38 23-60 39-76 (879)
9 2j8a_A Histone-lysine N-methyl 48.9 15 0.00053 30.8 3.9 46 12-57 3-55 (136)
10 1faf_A Large T antigen; J doma 39.4 56 0.0019 24.0 5.3 55 60-117 1-57 (79)
11 2fc8_A NCL protein; structure 35.8 46 0.0016 24.2 4.4 50 6-55 10-59 (102)
12 4azs_A Methyltransferase WBDD; 30.4 35 0.0012 33.6 3.7 27 140-166 314-340 (569)
13 2dh8_A DAZ-associated protein 20.7 1.1E+02 0.0036 22.3 4.0 51 5-55 10-63 (105)
No 1
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=100.00 E-value=1.6e-70 Score=571.18 Aligned_cols=228 Identities=70% Similarity=1.115 Sum_probs=210.3
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeecccc
Q psy17286 72 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYM 151 (300)
Q Consensus 72 ~~~~~~~~~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLm 151 (300)
|||++|++...++++|+++|.+||++++|+++.+||++++|.|||.+|||+++++|++|+++|.+.++|+||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~~~~~w~~t~~~~~~~~~k~vyYlS~Efl~ 80 (824)
T 2gj4_A 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYM 80 (824)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCEEE
T ss_pred CcccccccccccHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEEchhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhcCcHHHHHHHHHh------------------------------------------------------ccc
Q psy17286 152 GRSLQNTMINLGIQSAIDEAMYQ------------------------------------------------------KIK 177 (300)
Q Consensus 152 GR~L~NNLiNLGl~~~vkeaL~e------------------------------------------------------kI~ 177 (300)
||+|.|||+||||+++|+|||++ +|.
T Consensus 81 gr~L~n~l~nlg~~~~~~~~l~~~g~~l~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~ 160 (824)
T 2gj4_A 81 GRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIC 160 (824)
T ss_dssp ECCHHHHHHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEE
T ss_pred hhhhHHHHHHCCCHHHHHHHHHHhCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEee
Confidence 99999999999999999999998 899
Q ss_pred CCeeeecCcccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee---------cC--CCCcceeeEeecee----
Q psy17286 178 NGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL---------RP--KSSIANTRYLLFSV---- 242 (300)
Q Consensus 178 dG~QvE~PD~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~---------~P--~~~tVNtLRL~WsA---- 242 (300)
||+|+|.||+||++|||||++||+.+++|+|||+|+...+|.+|++++. +| +|++|||||| |+|
T Consensus 161 dG~Q~E~~d~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRl-W~a~~~~ 239 (824)
T 2gj4_A 161 GGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRL-WSAKAPN 239 (824)
T ss_dssp TTEEEEECCCTTTTCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEE-EEEECCC
T ss_pred CCEEEEcCccccccCCcccccCCCceEEEEeCCEEEecCCCceecccceEEEeeccCCcCCCCCCceEEEEE-EEeecCc
Confidence 9999999999999999999999999999999999986566768999885 23 8899999999 999
Q ss_pred -cCCcCcCCchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 243 -LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 243 -Fdl~~fn~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
|||..||.|+|..|+.+++.+||||+||||||++++||+|||||||||||||+||||+
T Consensus 240 ~f~~~~fn~G~~~~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqdilr 298 (824)
T 2gj4_A 240 DFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR 298 (824)
T ss_dssp ----------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhccCccHHHHHhcccchhhcCcCCCCCCCccchHhHhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999973
No 2
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=100.00 E-value=3.7e-67 Score=545.71 Aligned_cols=218 Identities=43% Similarity=0.662 Sum_probs=203.5
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHHh
Q psy17286 82 ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMIN 161 (300)
Q Consensus 82 ~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLiN 161 (300)
.++++|+++|.+||++++|+++.+|++.++|.|||.+|||+|+++|.+|+++|.+.++|+||||||||||||+|.|||+|
T Consensus 39 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~W~~t~~~~~~~~~k~vyYlS~EFL~Gr~L~n~l~n 118 (879)
T 1ygp_A 39 NKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALIN 118 (879)
T ss_dssp CSHHHHHHHHHHHHHTTSCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCCCCBCHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEchhhhhhhHHHHHHHh
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHH-------------HHHHHh------------------------------------------------------
Q psy17286 162 LGIQSAI-------------DEAMYQ------------------------------------------------------ 174 (300)
Q Consensus 162 LGl~~~v-------------keaL~e------------------------------------------------------ 174 (300)
|||++++ +|||++
T Consensus 119 lg~~~~~~~~~~~~~~~~~~~~al~~lg~~l~~~~~~E~da~LGnGGLGrLAacfLdS~AtLglP~~GyGlrY~~G~F~Q 198 (879)
T 1ygp_A 119 MKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQ 198 (879)
T ss_dssp CCC------------CHHHHHHHHHHHTCCHHHHHTTCCCBCSCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEE
T ss_pred cCChhhhchhhccccchhHHHHHHHHcCCCHHHHHhcCCCCCcCCCcHHHHHHHHHHHHHhCCCCeEEEEeeecCCceEE
Confidence 9999999 999998
Q ss_pred cccCCeeeecCcccccCCCCceeecCCeeEEEecCCEEEE--ec-CC---eeeeecee-------cC----CCCcceeeE
Q psy17286 175 KIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAE--IG-KG---KKYSYCLL-------RP----KSSIANTRY 237 (300)
Q Consensus 175 kI~dG~QvE~PD~WL~~GnPWEi~R~d~~~~V~F~G~v~~--~~-~G---~~w~~~~~-------~P----~~~tVNtLR 237 (300)
+|+||+|+|.||+||++|||||++||+.+++|+|||+|+. .. +| .+|++++. +| +|++|||||
T Consensus 199 ~i~dG~Q~E~pd~Wl~~g~pwe~~r~~~~~~V~f~G~v~~~~~~~~G~~~~~w~~~~~v~av~yD~Pi~Gy~~~~~n~lR 278 (879)
T 1ygp_A 199 KIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLR 278 (879)
T ss_dssp EEETTEEEEECCCTTTTCCTTCEEEEEEEEEEEESCEEECC----CTTSCCEEECSEEEEEEEEEEEEECSSCCCEEEEE
T ss_pred EeeCCeeEEeccchhccCCcccccCCCceEEEeeCCEEeeccccCCCcceeEeeCCcEEEEEEccccccCcCCCceEEEE
Confidence 8999999999999999999999999999999999999983 33 56 37988877 33 789999999
Q ss_pred eecee-----cCCcCcCCchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhhC
Q psy17286 238 LLFSV-----LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEVL 300 (300)
Q Consensus 238 L~WsA-----Fdl~~fn~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi~ 300 (300)
| |+| |||+.||.|||.+|++.+..+|+||+||||||++++||+|||||||||||||+||||+
T Consensus 279 L-W~a~~~~~f~l~~fn~gdy~~a~~~~~~~e~IT~vLYp~D~~~~GkeLRLkQEyfl~sa~lqdilr 345 (879)
T 1ygp_A 279 L-WQARPTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILR 345 (879)
T ss_dssp E-EEEEESCSCCHHHHHTTCHHHHTHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEeccCcccchhhccCccHhHhhhChHhhhchhccCCCCCCCccchhhheehhhhhhhhHHHHHHH
Confidence 9 999 9999999999999999999999999999999999999999999999999999999974
No 3
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=100.00 E-value=5.4e-64 Score=520.78 Aligned_cols=212 Identities=28% Similarity=0.528 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHH
Q psy17286 80 DVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTM 159 (300)
Q Consensus 80 ~~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNL 159 (300)
+..++++|+++|.+||.+++|+++.+|++.++|.|||.+|||++.++|.+|++ .++|+||||||||||||+|.|||
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~~rd~l~~~w~~t~~----~~~k~v~Y~S~Efl~gr~L~n~l 78 (796)
T 1l5w_A 3 PIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPV----ANQRHVNYISMEFLIGRLTGNNL 78 (796)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSSGGGCCHHHHHHHHHHHHHHHHHTSCCCCCC----SSCCEEEEECSCCCCCCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCChHhCCHHHHHHHHHHHHHHHHHHHHHHhcc----cCCceEEEEehHHhHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999985 67899999999999999999999
Q ss_pred HhcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecC
Q psy17286 160 INLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEP 185 (300)
Q Consensus 160 iNLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~P 185 (300)
+||||+++|+|||++ +|+||+|+|.|
T Consensus 79 ~nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~ 158 (796)
T 1l5w_A 79 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAP 158 (796)
T ss_dssp HHHTCHHHHHHHHHTTTCCHHHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEEC
T ss_pred HhcCcHHHHHHHHHHcCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeeeecCCceeEEecCCeeEEec
Confidence 999999999999998 89999999999
Q ss_pred cccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee-------cC----CCCcceeeEeecee-----cCCcCcC
Q psy17286 186 DDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL-------RP----KSSIANTRYLLFSV-----LFFPAVN 249 (300)
Q Consensus 186 D~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~-------~P----~~~tVNtLRL~WsA-----Fdl~~fn 249 (300)
|+||++|+|||++||+.+|+|+|||+|+. + ++|++++. +| +|++|||||| |+| |||+.||
T Consensus 159 d~wl~~~~pwe~~r~~~~~~V~f~g~~~~--~-~~w~~~~~v~av~yd~pi~Gy~~~~~n~lrl-W~a~~~~~f~l~~fn 234 (796)
T 1l5w_A 159 DDWHRSNYPWFRHNEALDVQVGIGGKVTK--D-GRWEPEFTITGQAWDLPVVGYRNGVAQPLRL-WQATHAHPFDLTKFN 234 (796)
T ss_dssp CCCCGGGCTTCEECGGGCEEEEESCEECT--T-SCEECSEEEEEEEEEEEEECSSSCCEEEEEE-EEEECSSCCCHHHHH
T ss_pred CccccCCCcceeecCCcEEEEeeCCEEee--c-ceecCCceEEEEEecccccCCCCCceEEEEE-EEeccCcccChhhcC
Confidence 99999999999999999999999999973 2 26888776 33 7999999999 999 9999999
Q ss_pred CchhHHHHHHHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhh
Q psy17286 250 DGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEV 299 (300)
Q Consensus 250 ~GdY~~Av~~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi 299 (300)
.|||.+|++.+..+|+||+||||||++++||+|||||||||||||+|||+
T Consensus 235 ~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~il 284 (796)
T 1l5w_A 235 DGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADIL 284 (796)
T ss_dssp TTCTTGGGHHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHhhhhhchHhHhhhhhcCcCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976
No 4
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=100.00 E-value=1.9e-62 Score=509.19 Aligned_cols=210 Identities=28% Similarity=0.472 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccCchHHHHHH
Q psy17286 81 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMI 160 (300)
Q Consensus 81 ~~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~~VRD~l~~~W~~T~~~y~~~~~KrVYYLSmEFLmGR~L~NNLi 160 (300)
+.++++|+++|.+||++++|+++.+|++.++|.|||.+|||++.++|.+|++.+.+. |+||||||||||||+|.|||+
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~--k~v~Y~S~Efl~gr~L~n~l~ 80 (796)
T 2c4m_A 3 PEKQPLPAALVGSHVRAAAGTPADLATDRKFWTGLSRAVQERIADDWERTREAYGAA--RQQHYFSAEFLMGRALLNNLT 80 (796)
T ss_dssp ---CCSCHHHHHHHHHHHHSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--CEEEEECSCCCCBCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCChHHCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccC--CeEEEEehhhcchhhhhhHHH
Confidence 466778999999999999999999999999999999999999999999999988765 999999999999999999999
Q ss_pred hcCcHHHHHHHHHh------------------------------------------------------cccCCeeeecCc
Q psy17286 161 NLGIQSAIDEAMYQ------------------------------------------------------KIKNGEQTEEPD 186 (300)
Q Consensus 161 NLGl~~~vkeaL~e------------------------------------------------------kI~dG~QvE~PD 186 (300)
||||+++|+|||++ +|+||+|+|.||
T Consensus 81 nlg~~~~~~~~l~~~g~~l~~~~~~E~d~~LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d 160 (796)
T 2c4m_A 81 NLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPD 160 (796)
T ss_dssp HTTCHHHHHHHHHHTTCCHHHHHTTCCCBCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECC
T ss_pred hcccHHHHHHHHHHcCCCHHHHHhhccccccCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCC
Confidence 99999999999998 899999999999
Q ss_pred ccccCCCCceeecCCeeEEEecCCEEEEecCCeeeeecee-cC--CCCcceeeEeecee-----cCCcCcCCchhHHHHH
Q psy17286 187 DWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKKYSYCLL-RP--KSSIANTRYLLFSV-----LFFPAVNDGDYIQAVL 258 (300)
Q Consensus 187 ~WL~~GnPWEi~R~d~~~~V~F~G~v~~~~~G~~w~~~~~-~P--~~~tVNtLRL~WsA-----Fdl~~fn~GdY~~Av~ 258 (300)
+||++|+|||++|++.+|+|+|+|+.... +++.. +| +|++|||||| |+| |||+.||.|||.+|++
T Consensus 161 ~wl~~g~pwe~~r~~~~~~V~f~g~~v~a------~~yd~pi~gy~~~~~n~lrl-W~a~~~~~f~l~~fn~gdy~~a~~ 233 (796)
T 2c4m_A 161 PWREEEYPFTIRRASDQLVVCFDDMKTRA------IPYDMPITGYGTHNVGTLRL-WKAEPWEEFDYDAFNAQRFTDAII 233 (796)
T ss_dssp CSSSSCCTTSEECGGGCEEEEETTEEEEE------EEEEEEECCTTCCCCEEEEE-EEEEESSSSCHHHHHTTCHHHHHH
T ss_pred ccccCCCceeEecCCcEEEEEeCCEEEEE------EEEeccccCcCCCceEEEEE-EecccccccchhhccCcchhhhhh
Confidence 99999999999999999999999985431 34433 55 7999999999 999 9999999999999999
Q ss_pred HHHhhhcccccccCCCCCcccchhhcccchhhhHhhhhhhh
Q psy17286 259 DRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQAEV 299 (300)
Q Consensus 259 ~k~~aE~IS~VLYPnDs~~~GKeLRLkQQYFfvSAslQDIi 299 (300)
.+..+|+||+||||||++++||+|||||||||||||+|||+
T Consensus 234 ~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~il 274 (796)
T 2c4m_A 234 ERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMI 274 (796)
T ss_dssp HHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhhhchhhcCcCCCCCcchHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976
No 5
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.01 E-value=7.1e-07 Score=93.88 Aligned_cols=46 Identities=80% Similarity=1.186 Sum_probs=45.0
Q ss_pred ceeeeccccccchHHHHHhhhcccceEEecccCCCCccceeeeecc
Q psy17286 13 QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSS 58 (300)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (300)
|||+||+++++++.++|++|++||||++.||++.||++|+|.|||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~ 46 (824)
T 2gj4_A 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAH 46 (824)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHTTCCCTTTCCHHHHHHHHHH
T ss_pred CcccccccccccHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999993
No 6
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=94.09 E-value=0.0061 Score=64.16 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=33.9
Q ss_pred cchHHHHHhhhcccceEEecccCCCCccceeeeecccc
Q psy17286 23 ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM 60 (300)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (300)
+||..++++|++||||++.||++.||++|+|.|+|.+.
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~v 41 (796)
T 2c4m_A 4 EKQPLPAALVGSHVRAAAGTPADLATDRKFWTGLSRAV 41 (796)
T ss_dssp --CCSCHHHHHHHHHHHHSSCTTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCChHHCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999443
No 7
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=93.48 E-value=0.0069 Score=63.78 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=36.1
Q ss_pred ccchHHHHHhhhcccceEEecccCCCCccceeeeecccc
Q psy17286 22 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM 60 (300)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (300)
..++.++|++|.+||||++.||++.||++|+|.|+|.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~~ 42 (796)
T 1l5w_A 4 IFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEAL 42 (796)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSGGGCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCChHhCCHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999554
No 8
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=92.32 E-value=0.027 Score=59.81 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=35.0
Q ss_pred cchHHHHHhhhcccceEEecccCCCCccceeeeecccc
Q psy17286 23 ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIM 60 (300)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (300)
.++.++|++|.+||||++.||+..||++|+|.|+|.+.
T Consensus 39 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~v 76 (879)
T 1ygp_A 39 NKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSI 76 (879)
T ss_dssp CSHHHHHHHHHHHHHTTSCCCGGGCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999443
No 9
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=48.90 E-value=15 Score=30.78 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=38.6
Q ss_pred cceeeecc----ccccchHHHHHhhhcc---cceEEecccCCCCccceeeeec
Q psy17286 12 KQISVRGI----ADVENVTTVKKYFNRH---LHFTLVKDRNVATPRDYYFVSS 57 (300)
Q Consensus 12 ~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 57 (300)
++|-|.|+ +---+-..||..|-.+ -|+.++.||+-+.||-|+|.-=
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef 55 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKY 55 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEEC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEE
Confidence 68999999 7666667777777766 9999999999999999998643
No 10
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=39.40 E-value=56 Score=23.97 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=39.5
Q ss_pred cccccCcHhhhhhhhhhccCCC--CCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q psy17286 60 MSVLKSDIDKRKQISVRGIADV--ENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAY 117 (300)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~L~~~~gk~~~~At~~d~Y~ALA~ 117 (300)
|...+|..+....+.+.|+... .+.+++|+++.+..... -|+.....+.|..+..
T Consensus 1 md~~~~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~---HPDk~~~~~~f~~i~~ 57 (79)
T 1faf_A 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLL---HPDKGGSHALMQELNS 57 (79)
T ss_dssp CCCCCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHS---SGGGSCCHHHHHHHHH
T ss_pred CcccccchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH---CcCCCCCHHHHHHHHH
Confidence 5566778888999999999998 99999999998766543 2333333455555444
No 11
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.80 E-value=46 Score=24.17 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=40.6
Q ss_pred CchhhhcceeeeccccccchHHHHHhhhcccceEEecccCCCCccceeee
Q psy17286 6 SDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFV 55 (300)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (300)
......+.|-|.+|+.--+-.+|++-|.......+++|++-..+|-|=|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV 59 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFV 59 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEE
Confidence 33455678999999988888999999999999999999877777776554
No 12
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=30.41 E-value=35 Score=33.58 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.8
Q ss_pred ceEEEEeeccccCchHHHHHHhcCcHH
Q psy17286 140 KRVYYLSLEYYMGRSLQNTMINLGIQS 166 (300)
Q Consensus 140 KrVYYLSmEFLmGR~L~NNLiNLGl~~ 166 (300)
..-+||-|||+-|+.|..-|..-|-.+
T Consensus 314 ~~~~yLVMEyv~G~~L~d~i~~~~~l~ 340 (569)
T 4azs_A 314 AQSGWLVMEKLPGRLLSDMLAAGEEID 340 (569)
T ss_dssp SSEEEEEEECCCSEEHHHHHHTTCCCC
T ss_pred CCEEEEEEecCCCCcHHHHHHhCCCCC
Confidence 456899999999999999998877443
No 13
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.69 E-value=1.1e+02 Score=22.33 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=38.8
Q ss_pred CCchhhhcceeeeccccccchHHHHHhhhcc---cceEEecccCCCCccceeee
Q psy17286 5 KSDIDKRKQISVRGIADVENVTTVKKYFNRH---LHFTLVKDRNVATPRDYYFV 55 (300)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 55 (300)
.++.+..+.|-|++|+.--+-.+|++-|.++ ....+++|+.-...|-|=|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV 63 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 63 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEE
Confidence 3455677889999999888889999999886 45677888776666666543
Done!