RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17286
(300 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 255 bits (654), Expect = 3e-79
Identities = 112/284 (39%), Positives = 141/284 (49%), Gaps = 77/284 (27%)
Query: 88 KKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSL 147
KK HL +TL KD AT RD Y ALAYAVRD LV RW RTQQ+Y++ D KRVYYLSL
Sbjct: 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60
Query: 148 EYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTE--EPD------------------- 186
E+ MGR L N ++NLG+ + EA+ + + E E EPD
Sbjct: 61 EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120
Query: 187 ---------------------------------DWLRYGNPWEKARPEYMIPVNFYGRVA 213
+WLRYGNPWE RP+ +PV F GRV
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVE 180
Query: 214 EIGKGKKYSYCLLRPKSSIA---------------NT-RYLLFSV-----LFFPAVNDGD 252
G + + ++ +A NT R L+S A N GD
Sbjct: 181 HYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLR--LWSAEASEEFDLDAFNRGD 238
Query: 253 YIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
YI+AV ++N AENIS+VLYPND+ GKELRLKQ+YF +A+LQ
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQ 282
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 222 bits (567), Expect = 9e-67
Identities = 100/279 (35%), Positives = 129/279 (46%), Gaps = 73/279 (26%)
Query: 91 FNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYY 150
HL +T K + ATPRD Y ALA AVRD LV RW+ TQ+ Y +N+ K+VYYLS E+
Sbjct: 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFL 60
Query: 151 MGRSLQNTMINLGIQSAIDEAMYQKIKNGEQTE--EPD---------------------- 186
MGR L N ++NLG+ + EA+ + + E+ E D
Sbjct: 61 MGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATL 120
Query: 187 ------------------------------DWLRYGNPWEKARPEYMIPVNFYGRVAEIG 216
DWLRYGNPWE RP+ V F GRV
Sbjct: 121 GLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQP 180
Query: 217 KGKKYS-------------YCLLRP--KSSIANTRYL----LFSVLFFPAVNDGDYIQAV 257
+ Y + P ++ NT L A N GDY +AV
Sbjct: 181 DSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAPEEFDLDAFNAGDYYEAV 240
Query: 258 LDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
++N AENISRVLYPND+ + GKELRLKQ+YF +A+LQ
Sbjct: 241 EEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQ 279
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 152 bits (386), Expect = 9e-42
Identities = 68/140 (48%), Positives = 81/140 (57%), Gaps = 16/140 (11%)
Query: 173 YQKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKK------------ 220
QKI +G Q E PDDWL YGNPWE RP+ PV FYG+V E K
Sbjct: 57 EQKIVDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVA 116
Query: 221 YSYCLLRPKSSIANTRYLLFS----VLFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNN 276
Y + +++ NT L + NDGDY+ AV D+N AENISRVLYPNDN
Sbjct: 117 YDTPIPGYRTNNTNTLRLWSAKASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNT 176
Query: 277 FGGKELRLKQEYFMCAATLQ 296
F GKELRLKQ+YF+ +ATLQ
Sbjct: 177 FEGKELRLKQQYFLVSATLQ 196
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 149 bits (377), Expect = 2e-40
Identities = 89/271 (32%), Positives = 128/271 (47%), Gaps = 69/271 (25%)
Query: 95 LHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRS 154
L FT+ KD +A ++ A +AVRD LV RW+R+ + + ++VYYLS+E+ +GR+
Sbjct: 25 LMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRT 84
Query: 155 LQNTMINLGI----QSAIDE---------------------------------------- 170
L N +++LGI Q A++
Sbjct: 85 LSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPG 144
Query: 171 ---------AMY-QKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRVAEIGKGKK 220
M+ Q I NG Q E PD WL YGNPWE R V F GR+ + GK +
Sbjct: 145 RGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTR 204
Query: 221 Y---------SYCLLRPKSSIANTRYLLF------SVLFFPAVNDGDYIQAVLDRNLAEN 265
+ +Y + P T L S + N GDY AV D+N +EN
Sbjct: 205 WIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSEN 264
Query: 266 ISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 296
+SRVLYP+D+ + G+ELRL+QEYF+ +AT+Q
Sbjct: 265 VSRVLYPDDSTYSGRELRLRQEYFLVSATVQ 295
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 138 bits (351), Expect = 7e-37
Identities = 81/280 (28%), Positives = 110/280 (39%), Gaps = 98/280 (35%)
Query: 83 NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRV 142
+ + L T K A P D+Y AL VR+ L + W+R Q + D K+V
Sbjct: 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQV 64
Query: 143 YYLSLEYYMGRSLQNTMINLGI----QSAIDEAMY------------------------- 173
YYLS+E+ +GR L N + NLGI Q A+ E Y
Sbjct: 65 YYLSMEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLGGGLGRLAGCF 124
Query: 174 ------------------------QKIKNGEQTEEPDDWLRYGNPWEKARP----EYMIP 205
Q +G Q E PD+WL+YGNPWE R Y +P
Sbjct: 125 LDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVP 184
Query: 206 VNFYGR--------VAEIGKGKKYSYCLLRPKSSIANTRYLLFSVLFFPAVNDGDYIQAV 257
V Y A++G+ L+ N G+
Sbjct: 185 VPGYDNRVVTLRLWQAQVGRVP-----------------------LYLLDFNVGE----- 216
Query: 258 LDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQA 297
++N A NI+RVLYP D+ KELRLKQEYF+ +A +Q
Sbjct: 217 -NKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQD 251
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 79.3 bits (196), Expect = 2e-16
Identities = 63/266 (23%), Positives = 108/266 (40%), Gaps = 80/266 (30%)
Query: 107 TPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQS 166
TPR ++ A++ A+ + L ++ + + V Y+S+E+ +GR N ++NLG
Sbjct: 30 TPRQWWQAVSAALAELLRAQPAAKPV----ANQRHVNYISMEFLIGRLTGNNLLNLGWYD 85
Query: 167 AIDEAM------------------------------------------------YQ---- 174
+ + + YQ
Sbjct: 86 DVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLF 145
Query: 175 --KIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNFYGRV-----------AEIGKGKKY 221
+G+Q E PDDW R PW + + V G+V A G+ +
Sbjct: 146 RQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKVTKQDGRERWEPAFTITGEAW 205
Query: 222 SYCLLRPKSSIANTRYLL-------FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYPND 274
++ ++ +A L F + F NDGD+++A AE +++VLYPND
Sbjct: 206 DLPVVGYRNGVAQPLRLWQATHAHPFDLTKF---NDGDFLRAEQQGIDAEKLTKVLYPND 262
Query: 275 NNFGGKELRLKQEYFMCAATLQAEVL 300
N+ GK+LRL Q+YF CA ++ A++L
Sbjct: 263 NHTAGKKLRLMQQYFQCACSV-ADIL 287
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 28.0 bits (62), Expect = 8.5
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 VENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFVSSSIMSVLKSDIDKRKQISVRGIADV 81
VE V + K+ F+ R + + Y +S S + L+S I++ +++ V +
Sbjct: 791 VEAVASDKRSFDIDFF-----RRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEE 845
Query: 82 ENVTTVKKYFNRHLHFTLVKD 102
E++ V F L FT++KD
Sbjct: 846 EDMGDVPDEFLDPLMFTIMKD 866
>gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.
Length = 681
Score = 27.8 bits (63), Expect = 9.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 210 GRVAEIGKGKKYSYCLL---RPKSSIANTR 236
GRV G+G SYC+L P S A R
Sbjct: 571 GRV---GRGAAQSYCVLLYKDPLSETARER 597
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,535,181
Number of extensions: 1500399
Number of successful extensions: 1230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 35
Length of query: 300
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 204
Effective length of database: 6,679,618
Effective search space: 1362642072
Effective search space used: 1362642072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)