RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17286
         (300 letters)



>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score =  229 bits (585), Expect = 6e-70
 Identities = 155/295 (52%), Positives = 180/295 (61%), Gaps = 69/295 (23%)

Query: 72  QISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQ 131
           QISVRG+A VENVT +KK FNRHLHFTLVKDRNVATPRDYYFALA+ VRD+LV RWIRTQ
Sbjct: 1   QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60

Query: 132 QHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSA------------------------ 167
           QHY+E DPKR+YYLSLE+YMGR+LQNTM+NL +++A                        
Sbjct: 61  QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120

Query: 168 ------------IDEA------------MY------QKIKNGEQTEEPDDWLRYGNPWEK 197
                       +D               Y      QKI  G Q EE DDWLRYGNPWEK
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180

Query: 198 ARPEYMIPVNFYGRV-----------AEIGKGKKYSYCLLRPKSSIANTRYLLFSV---- 242
           ARPE+ +PV+FYGRV            ++     Y   +   ++++ NT  L  +     
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240

Query: 243 LFFPAVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQA 297
                 N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ 
Sbjct: 241 FNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD 295


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score =  187 bits (476), Expect = 2e-54
 Identities = 90/325 (27%), Positives = 119/325 (36%), Gaps = 91/325 (28%)

Query: 61  SVLKSDIDKRKQISVRGIADVENVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVR 120
            +         +  V+     E     +  F  H+  TL +          Y A + ++R
Sbjct: 18  MIPLLSRALWNKHQVKKFNKAE---DFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIR 74

Query: 121 DNLVSRWIRTQQHYFENDPKRVYYLSLEYYMGRSLQNTMINLGIQSAIDEAMYQKIKNGE 180
           DNLV  W +TQQ +   DPKRVYYLSLE+ MGR+L N +IN+ I+   D A  +      
Sbjct: 75  DNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREM 134

Query: 181 QTE---------------EPDDWL------------------------------RYG--- 192
                             EPD  L                               YG   
Sbjct: 135 IKGALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFA 194

Query: 193 ------------NPW-------EKARPEYMIPVNFYGRV-----------------AEIG 216
                       + W       E  R E  IPV FYG V                  E  
Sbjct: 195 QKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERV 254

Query: 217 KGKKYSYCLLRPKSSIANTRYLL----FSVLFFPAVNDGDYIQAVLDRNLAENISRVLYP 272
               Y + +   K+S  N   L      +       N+GDY  +V  +  AE+I+ VLYP
Sbjct: 255 LAVAYDFPVPGFKTSNVNNLRLWQARPTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYP 314

Query: 273 NDNNFGGKELRLKQEYFMCAATLQA 297
           NDN   GKELRLKQ+YF CAA+L  
Sbjct: 315 NDNFAQGKELRLKQQYFWCAASLHD 339


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score =  174 bits (441), Expect = 6e-50
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 70/281 (24%)

Query: 83  NVTTVKKYFNRHLHFTLVKDRNVATPRDYYFALAYAVRDNLVSRWIRTQQHYFENDPKRV 142
           N    ++  +R      +      TPR ++ A++ A+ + L ++           + + V
Sbjct: 6   NDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA----NQRHV 61

Query: 143 YYLSLEYYMGRSLQNTMIN----------------------------------LGIQSA- 167
            Y+S+E+ +GR   N ++N                                  LG  +A 
Sbjct: 62  NYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAAC 121

Query: 168 -IDEA------------MY------QKIKNGEQTEEPDDWLRYGNPWEKARPEYMIPVNF 208
            +D               Y      Q   +G+Q E PDDW R   PW +      + V  
Sbjct: 122 FLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGI 181

Query: 209 YGRVAEIGK--------GKKYSYCLLRPKSSIANTRYLLFS----VLFFPAVNDGDYIQA 256
            G+V + G+        G+ +   ++  ++ +A    L  +           NDGD+++A
Sbjct: 182 GGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRA 241

Query: 257 VLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQA 297
                 AE +++VLYPNDN F GK+LRL Q+YF CA ++  
Sbjct: 242 EQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVAD 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,146,884
Number of extensions: 54141
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 10
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)