BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1729
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 42/54 (77%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVK 105
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y R+ + +
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQKYQNTDAYQTYSRKAKSR 184
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQ 166
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+ Y+ +DAYQ+Y R+
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQQYQNTDAYQTYSRK 180
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T+++G+EWSKL EK+ YLD AE DK+RY +EL+
Sbjct: 131 ITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQ 166
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANG 111
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R + + Q
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSR--KTQDRQKGK 190
Query: 112 TEESDIATDATDEIDEEEE 130
+ D A AT + ++E E
Sbjct: 191 SHRQDAARQATHDHEKETE 209
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKEL 167
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANG 111
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R + + Q
Sbjct: 132 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSR--KTQDRQKGK 189
Query: 112 TEESDIATDATDEIDEEEE 130
+ D A AT + ++E E
Sbjct: 190 SHRQDAARQATHDHEKETE 208
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL
Sbjct: 132 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKEL 166
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
+T++LGNEWSKL EK+ YLD A+ DK+RY EL+ Y+K++AY+ + R+
Sbjct: 134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRK 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+T++LGNEWSKL EK+ YLD A+ DK+RY EL
Sbjct: 134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMREL 168
>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Bos taurus
GN=HMG20B PE=2 SV=1
Length = 317
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAY 95
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAY 143
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKV 52
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRA 136
>sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Homo sapiens
GN=HMG20B PE=1 SV=1
Length = 317
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAY 95
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAY 143
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKV 52
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRA 136
>sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Mus musculus
GN=Hmg20b PE=1 SV=1
Length = 317
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAY 95
+TK+LG EWSKL EK+ YLD AE +K++Y +EL Y++S+AY
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 143
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+TK+LG EWSKL EK+ YLD AE +K++Y +EL
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 134
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 34 VYLDRAE-VDKKRYREELKVTKL---LGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+Y +AE + K EL T++ LG W K++ EK+ Y+++++VDKKRY EE Y
Sbjct: 566 MYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAY 625
Query: 90 RKSDA 94
R + A
Sbjct: 626 RGAAA 630
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 5 SEKMISTTKLLVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
S ++TT+ + K LG W K++ EK+ Y+++++VDKKRY EE
Sbjct: 579 SNPELATTE--IAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEE 621
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
++ K LG W K+S EK+ Y+ +A+VDKKRY +E VYR
Sbjct: 586 EIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYR 625
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTK 54
+ K LG W K+S EK+ Y+ +A+VDKKRY +E V +
Sbjct: 587 IAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYR 625
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
++ K LG W K++ EK+ Y+ +++VDKKRY +E VYR + A
Sbjct: 585 EIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAA 628
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTK 54
+ K LG W K++ EK+ Y+ +++VDKKRY +E V +
Sbjct: 586 IAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYR 624
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V K+LG +W LS E+K Y D+A DKKRY +E Y+ +A
Sbjct: 56 QVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V K+LG +W LS E+K Y D+A DKKRY +E
Sbjct: 57 VGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDE 90
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 31/40 (77%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
+V K+LG++W ++S +K+ Y +A+VDK+RY++E+ Y+
Sbjct: 591 EVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYK 630
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
V K+LG++W ++S +K+ Y +A+VDK+RY++E+
Sbjct: 592 VGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEI 626
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
V ++LG +W LS EK+ Y +A+ DKKRY++E+ Y+
Sbjct: 588 VGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYK 626
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
V ++LG +W LS EK+ Y +A+ DKKRY++E+
Sbjct: 588 VGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEI 622
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 96 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 96 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
+ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 61 IGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 111
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 49 ELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
E + TKL+G WS LS E+ VY D DK+RY+ EL YR++
Sbjct: 281 EREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRET 324
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 17 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
TKL+G WS LS E+ VY D DK+RY+ EL
Sbjct: 285 TKLIGESWSNLSTEERMVYQDIGLKDKERYQREL 318
>sp|Q8CGW4|SOX30_MOUSE Transcription factor SOX-30 OS=Mus musculus GN=Sox30 PE=2 SV=1
Length = 782
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKSLQ 108
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 395 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFPLSV 449
Query: 109 AN---GTEESDIATDAT 122
+N GT ++ I+T+ T
Sbjct: 450 SNVFSGTTQNIISTNPT 466
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 20 LGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 400 LGLEWNKLSEEQKKPYYDEAQKIKEKHREEF 430
>sp|Q8WNV5|SOX30_MACFA Transcription factor SOX-30 OS=Macaca fascicularis GN=SOX30 PE=2
SV=1
Length = 753
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKSLQ 108
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 366 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFPLSV 420
Query: 109 AN---GTEESDIATDAT 122
+N GT ++ I+T+ T
Sbjct: 421 SNVFSGTTQNIISTNPT 437
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 20 LGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 371 LGLEWNKLSEEQKKPYYDEAQKIKEKHREEF 401
>sp|O94993|SOX30_HUMAN Transcription factor SOX-30 OS=Homo sapiens GN=SOX30 PE=1 SV=1
Length = 753
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK--VYRKSDAYQSYLRRKRVKSLQ 108
+++ LG EW+KLS +KK Y D A+ K+++REE VY+ +RKR
Sbjct: 366 EISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG-----KRKRFPLSV 420
Query: 109 AN---GTEESDIATDAT 122
+N GT ++ I+T+ T
Sbjct: 421 SNVFSGTTQNIISTNPT 437
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 20 LGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
LG EW+KLS +KK Y D A+ K+++REE
Sbjct: 371 LGLEWNKLSEEQKKPYYDEAQKIKEKHREEF 401
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 39 AEVDKKRYREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
A + + + +E +TK +G+ WS L+ EK+VY D+ D +RYR E+ Y+ S
Sbjct: 254 ARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSS 307
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+TK +G+ WS L+ EK+VY D+ D +RYR E+
Sbjct: 267 ITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEM 301
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V ++LG +W LS EK+ Y +AE DKKRY E ++Y + A
Sbjct: 50 QVGRVLGEKWKALSDDEKQPYEAKAEADKKRYESEKELYNATKA 93
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V ++LG +W LS EK+ Y +AE DKKRY E
Sbjct: 51 VGRVLGEKWKALSDDEKQPYEAKAEADKKRYESE 84
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 48 EELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSL 107
+++ K GN W+ LS ++KVY +++ D KRY+ E+ YR L RV +
Sbjct: 240 QKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRS-------LMESRVAEI 292
Query: 108 QANGTEESDIATDATDEIDEEEEDN 132
A ++ + A + DE ++N
Sbjct: 293 VA--ATDAGTSASAAETADEASQEN 315
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 13 KLLVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
K+ K GN W+ LS ++KVY +++ D KRY+ E+
Sbjct: 241 KVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEI 278
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V ++LG W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 56 QVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V ++LG W L+ EK+ Y +A+ DKKRY E
Sbjct: 57 VGRILGERWKALTAEEKQPYESKAQADKKRYESE 90
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=nhp6 PE=3 SV=1
Length = 104
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V K+LG W LS E++ Y ++A DKKRY +E Y
Sbjct: 54 QVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASY 92
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=NHP6 PE=3 SV=1
Length = 92
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V KLLG +W L+ +K Y ++A+ DKKRY +E Y K +A
Sbjct: 48 QVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKKNA 91
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V KLLG +W L+ +K Y ++A+ DKKRY +E
Sbjct: 49 VGKLLGEKWKALTPEDKIPYENKADTDKKRYEKE 82
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTKLLGNEWSKLSLPEKKVYLDRA 75
V K G +W +S +KK + D+A DK RY E+K K G K S P K D++
Sbjct: 589 VAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKKSSDQS 648
Query: 76 EVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANGTEESDIATDATDEID 126
+ + +E + SD + +K +ESD A++++ E D
Sbjct: 649 PGKQFKSKEHISDTDDSDDDEPLKAKK----------DESDAASESSGESD 689
>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2
Length = 386
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 87 KVYRKSDAYQSYLRRK--RVKSLQANGTEESDIATDATDEIDEEEEDNEELYCRVCDQWF 144
+ + K+D ++ LRRK + + A G +E A A + EEE YC VC + F
Sbjct: 20 RAHYKTDWHRYNLRRKVANMAPVTAEGFQERVRAQRA---VAEEESKGTATYCTVCSKKF 76
Query: 145 TTLHNKREHLNGRQHFQ 161
T + HL R+H +
Sbjct: 77 ATFNAYENHLKSRRHVE 93
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V KLLG +W L+ +K Y ++AE DKKRY +E Y K ++
Sbjct: 48 QVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V KLLG +W L+ +K Y ++AE DKKRY +E
Sbjct: 49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
+++++G W+KL+ EK +Y +A DK+RYR E++ YR
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYR 330
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL-------KVTKLLGNEWS-KLSLPE 67
+++++G W+KL+ EK +Y +A DK+RYR E+ K +L+ N + LPE
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQQRLPE 351
Query: 68 KKVYLDRAEVD 78
+ V D AE D
Sbjct: 352 QNV--DMAEAD 360
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V K LG +W L+ EK Y ++A DKKRY +E Y+ + A
Sbjct: 54 QVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAA 97
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTKLLGNEW 60
V K LG +W L+ EK Y ++A DKKRY +E K E+
Sbjct: 55 VGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAAEF 99
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V ++LG +W L+ EK Y +AE DKKRY E ++Y
Sbjct: 47 QVGRILGEKWKALNEDEKAPYEAKAEADKKRYESEKELY 85
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V ++LG +W L+ EK Y +AE DKKRY E
Sbjct: 48 VGRILGEKWKALNEDEKAPYEAKAEADKKRYESE 81
>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1
Length = 477
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 87 KVYRKSDAYQSYLRRKRVKSLQANGTEESDIATDATDEIDEEEEDNEELYCRVCDQWFTT 146
+ + K+D ++ LRRK V S+ E A + EEE YC VC + F +
Sbjct: 20 RAHYKTDWHRYNLRRK-VASMAPVTAEGFQERVRAQRAVAEEESKGSATYCTVCSKKFAS 78
Query: 147 LHNKREHLNGRQHFQ 161
+ HL R+H +
Sbjct: 79 FNAYENHLKSRRHVE 93
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
+V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 283 EVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
+V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 283 EVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 324
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
+V+K++ + W L +K+VY + E KK Y + L YR S
Sbjct: 284 EVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 325
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V K LG +W L+ EK+ Y +A+ DKKRY E ++Y
Sbjct: 50 QVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V K LG +W L+ EK+ Y +A+ DKKRY E
Sbjct: 51 VGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=nhp-6 PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V K+LG W LS ++ Y +A DKKRY +E + Y
Sbjct: 55 QVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V K+LG W LS ++ Y +A DKKRY +E
Sbjct: 56 VGKILGERWKALSDKQRAPYEAKAAADKKRYEDE 89
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V KLLG W L+ ++ Y +A DKKRY +E + Y
Sbjct: 53 QVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V KLLG W L+ ++ Y +A DKKRY +E
Sbjct: 54 VGKLLGERWKALNEKQRAPYEAKAAADKKRYEDE 87
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 50 LKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
++V K G WS + +K+ Y RA + + +YREEL VYR
Sbjct: 121 VQVAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVYR 161
>sp|Q6AXL8|ZMAT5_DANRE Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1
Length = 173
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 136 YCRVCDQWFT-TLHNKREHLNGRQH 159
YC CD+ F LHN+++HLNG QH
Sbjct: 6 YCDYCDRSFQDNLHNRKKHLNGVQH 30
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 50 LKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 91
++++K G W +L E+KVY + AE DK+RY+ E+ K
Sbjct: 230 VEMSKAAGAAWKELGPEERKVYEEMAEKDKERYKREMAALPK 271
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
++K G W +L E+KVY + AE DK+RY+ E+
Sbjct: 232 MSKAAGAAWKELGPEERKVYEEMAEKDKERYKREM 266
>sp|Q76IQ7|TOX2_RAT TOX high mobility group box family member 2 OS=Rattus norvegicus
GN=Tox2 PE=2 SV=1
Length = 473
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQAN 110
V+K++ + W L +K+ Y + E KK Y + L YR S +S + K+ QAN
Sbjct: 234 VSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSPPDQGEAKNAQAN 292
>sp|Q55C24|NHP6_DICDI Non-histone chromosomal protein 6 homolog OS=Dictyostelium
discoideum GN=nhp6 PE=3 SV=1
Length = 141
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+ LLG EW+K+S +KK Y A DKKR+ E K Y
Sbjct: 83 IGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNY 120
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+ LLG EW+K+S +KK Y A DKKR+ E K
Sbjct: 83 IGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKK 118
>sp|Q2TA39|ZMAT5_BOVIN Zinc finger matrin-type protein 5 OS=Bos taurus GN=ZMAT5 PE=2 SV=1
Length = 170
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 136 YCRVCDQWFT-TLHNKREHLNGRQHFQ 161
+C CD+ F LHN+++HLNG QH +
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLK 32
>sp|Q9CQR5|ZMAT5_MOUSE Zinc finger matrin-type protein 5 OS=Mus musculus GN=Zmat5 PE=2
SV=1
Length = 170
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 136 YCRVCDQWFT-TLHNKREHLNGRQHFQ 161
+C CD+ F LHN+++HLNG QH +
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLK 32
>sp|Q9UDW3|ZMAT5_HUMAN Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1
SV=1
Length = 170
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 136 YCRVCDQWFT-TLHNKREHLNGRQHFQ 161
+C CD+ F LHN+++HLNG QH +
Sbjct: 6 FCDYCDRSFQDNLHNRKKHLNGLQHLK 32
>sp|Q562A2|ZFR_RAT Zinc finger RNA-binding protein OS=Rattus norvegicus GN=Zfr PE=1
SV=2
Length = 1073
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 106 SLQANGTEESDIATDATDEIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHFQRFDR 165
SL A ++ + D +E+ +E +C++C+ F + K HL GR+H ++ +
Sbjct: 552 SLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKK 611
Query: 166 R 166
+
Sbjct: 612 K 612
>sp|P36395|SRY_SMIMA Sex-determining region Y protein OS=Sminthopsis macroura GN=SRY
PE=2 SV=1
Length = 208
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANG 111
++K LG W LS EK+ ++D A KR R++ +++ Y+ Y R++ KS N
Sbjct: 65 ISKQLGVTWKLLSDSEKRPFIDEA----KRLRDK---HKQVSDYK-YQPRRKTKSFLKNV 116
Query: 112 TEESDIATDATDEIDEEE---EDNEELY 136
D T ATD++ + + ED+ +Y
Sbjct: 117 YNHKDHLTKATDQLIKTQHLKEDSTTIY 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,431,753
Number of Sequences: 539616
Number of extensions: 2776094
Number of successful extensions: 15770
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 14674
Number of HSP's gapped (non-prelim): 1127
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)