Your job contains 1 sequence.
>psy1729
MDIESEKMISTTKLLVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTKLLGNEW
SKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANGTEESDIATD
ATDEIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHFQRFDRRNCNC
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1729
(170 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1N8B1 - symbol:LOC100857252 "Uncharacterized p... 150 4.1e-10 1
MGI|MGI:1914117 - symbol:Hmg20a "high mobility group 20A"... 147 8.5e-10 1
UNIPROTKB|Q0VCL5 - symbol:HMG20A "High-mobility group 20A... 147 8.6e-10 1
UNIPROTKB|E2RKW6 - symbol:HMG20A "Uncharacterized protein... 147 8.6e-10 1
UNIPROTKB|Q9NP66 - symbol:HMG20A "High mobility group pro... 147 8.6e-10 1
UNIPROTKB|Q5ZKF4 - symbol:HMG20A "High mobility group pro... 147 8.7e-10 1
RGD|1564760 - symbol:Hmg20a "high mobility group 20A" spe... 147 1.0e-09 1
UNIPROTKB|C9J8X5 - symbol:HMG20B "SWI/SNF-related matrix-... 137 2.2e-09 1
UNIPROTKB|E2R4Z8 - symbol:HMG20B "Uncharacterized protein... 137 8.7e-09 1
UNIPROTKB|Q32L68 - symbol:HMG20B "SWI/SNF-related matrix-... 137 8.8e-09 1
UNIPROTKB|Q9P0W2 - symbol:HMG20B "SWI/SNF-related matrix-... 137 8.8e-09 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 126 3.3e-08 1
MGI|MGI:1341190 - symbol:Hmg20b "high mobility group 20B"... 129 6.7e-08 1
RGD|1309235 - symbol:Hmg20b "high mobility group 20 B" sp... 129 6.8e-08 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 110 1.6e-06 1
UNIPROTKB|J3KT85 - symbol:SMARCE1 "SWI/SNF-related matrix... 104 7.0e-06 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 99 2.4e-05 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 99 2.4e-05 1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix... 104 2.5e-05 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 80 3.0e-05 2
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 96 5.0e-05 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 96 5.0e-05 1
TAIR|locus:2199824 - symbol:AT1G76110 species:3702 "Arabi... 107 9.7e-05 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 93 0.00010 1
UNIPROTKB|F1RXE6 - symbol:SMARCE1 "Uncharacterized protei... 104 0.00011 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 82 0.00014 2
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot... 79 0.00017 2
UNIPROTKB|I3L7F6 - symbol:TFAM "Transcription factor A, m... 88 0.00035 1
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe... 104 0.00042 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 87 0.00045 1
UNIPROTKB|A8MRB2 - symbol:TFAM "Transcription factor A, m... 101 0.00047 1
UNIPROTKB|H0YKM5 - symbol:HMG20A "High mobility group pro... 98 0.00048 1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass... 104 0.00050 1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei... 104 0.00053 1
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ... 104 0.00053 1
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix... 104 0.00057 1
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix... 104 0.00057 1
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei... 104 0.00057 1
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci... 104 0.00058 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 86 0.00058 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 71 0.00061 2
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot... 74 0.00071 2
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 75 0.00090 2
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 150 (57.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLR----RKRVKS 106
++T++LGNEWSKL EK+ YLD A+ DK+RY EL+ Y+K++AY+ + R R++ KS
Sbjct: 133 EITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKS 192
Query: 107 LQANGTEE 114
+ +G +
Sbjct: 193 HRQDGARQ 200
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY EL+
Sbjct: 134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELE 169
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 147 (56.8 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 131 EITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 181
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+
Sbjct: 132 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 167
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 132 EITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 132 EITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 132 EITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 147 (56.8 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 26/51 (50%), Positives = 40/51 (78%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY EL+ Y+K++AY+ + R+
Sbjct: 133 EITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRK 183
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY EL+
Sbjct: 134 ITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELE 169
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRR 101
++T++LGNEWSKL EK+ YLD A+ DK+RY +EL+ Y+K++AY+ + R+
Sbjct: 132 EITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRK 182
Score = 114 (45.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+T++LGNEWSKL EK+ YLD A+ DK+RY +EL+
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 26/58 (44%), Positives = 43/58 (74%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKRVK 105
++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+ ++ K++K
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIK 156
Score = 106 (42.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELR 135
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 137 (53.3 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 26/58 (44%), Positives = 43/58 (74%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKRVK 105
++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+ ++ K++K
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIK 156
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELR 135
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 137 (53.3 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 26/58 (44%), Positives = 43/58 (74%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKRVK 105
++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+ ++ K++K
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCAEKIQEKKIK 156
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELR 135
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 137 (53.3 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 26/58 (44%), Positives = 43/58 (74%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ---SYLRRKRVK 105
++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+AY+ ++ K++K
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIK 156
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELR 135
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
++TK+LG EWSKL EK+ YLD AE +K++Y +EL+ Y++S+A
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA 142
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+LG EWSKL EK+ YLD AE +K++Y +EL+
Sbjct: 100 ITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELR 135
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 129 (50.5 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 96
++TK+LG EWSKL EK+ YLD AE +K++Y +EL Y++S+AY+
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144
Score = 104 (41.7 bits), Expect = 0.00037, P = 0.00037
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+TK+LG EWSKL EK+ YLD AE +K++Y +EL
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 134
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 129 (50.5 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ 96
++TK+LG EWSKL EK+ YLD AE +K++Y +EL Y++S+AY+
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 144
Score = 104 (41.7 bits), Expect = 0.00037, P = 0.00037
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+TK+LG EWSKL EK+ YLD AE +K++Y +EL
Sbjct: 100 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 134
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 11 TTKLLVTKLLGNEWSK-LSLPEK--KVYLDRAEVDKKRYREEL------KVTKLLGNEWS 61
T K T+ G K + P++ Y+ A ++ + REE +V K+LG +W
Sbjct: 7 TRKTKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWK 66
Query: 62 KLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
LS E+K Y D+A DKKRY +E Y+ +A
Sbjct: 67 SLSDKERKPYEDKAAADKKRYEDEKAAYKAGEA 99
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 25 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 76
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 38 RAEVDKKR---YREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 93
R E+ K++ ++ +V KL+G W +LS +K Y +A++DK RY +E++ YRK +
Sbjct: 39 RLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 38 RAEVDKKR---YREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 93
R E+ K++ ++ +V KL+G W +LS +K Y +A++DK RY +E++ YRK +
Sbjct: 39 RLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 104 (41.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 77 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 80 (33.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANG 111
V K LG W+K+S EK+ Y +A K++Y +++ YR + K +AN
Sbjct: 124 VAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRSKGKVGGGAAKAPSKPDKAND 183
Query: 112 TEE 114
+E
Sbjct: 184 EDE 186
Score = 68 (29.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 17 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+K W +S EK + D A++DK RY E+K
Sbjct: 41 SKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMK 75
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V KLLG +W L+ +K Y ++AE DKKRY +E Y K ++
Sbjct: 48 QVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V KLLG +W L+ +K Y ++AE DKKRY +E
Sbjct: 49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V KLLG +W L+ +K Y ++AE DKKRY +E Y K ++
Sbjct: 48 QVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKKNS 91
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V KLLG +W L+ +K Y ++AE DKKRY +E
Sbjct: 49 VGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
>TAIR|locus:2199824 [details] [associations]
symbol:AT1G76110 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006333 "chromatin
assembly or disassembly" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0010310 "regulation of hydrogen peroxide metabolic process"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] [GO:0031348 "negative regulation of defense response"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC009978 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 HSSP:P11632 EMBL:AY099630 EMBL:BT008823
IPI:IPI00540147 PIR:B96789 RefSeq:NP_177738.1 UniGene:At.43665
ProteinModelPortal:Q9SGS2 SMR:Q9SGS2 IntAct:Q9SGS2 PaxDb:Q9SGS2
PRIDE:Q9SGS2 EnsemblPlants:AT1G76110.1 GeneID:843943
KEGG:ath:AT1G76110 TAIR:At1g76110 InParanoid:Q9SGS2 OMA:FMIPVIG
PhylomeDB:Q9SGS2 Genevestigator:Q9SGS2 Uniprot:Q9SGS2
Length = 338
Score = 107 (42.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 43 KKRY-REELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
K Y +E + TKL+G WS LS E+ VY D DK+RY+ EL YR++
Sbjct: 274 KSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYRET 324
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V ++LG W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 56 QVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNATRA 99
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 82 (33.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANG 111
V K LG W+ LS EK+ +L A+ K +Y++++ YRK + S + K +
Sbjct: 124 VAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYRKKGSGGSSSAKSEPKDDDDDD 183
Query: 112 TEE 114
EE
Sbjct: 184 DEE 186
Score = 58 (25.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 17 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+K W +S EK + D A+ DK RY +E+
Sbjct: 42 SKKCSERWKTMSPKEKTKFEDLAKQDKARYDQEM 75
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 79 (32.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 50 LKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
++V K G WS + +K+ Y RA + + +YREEL VYR
Sbjct: 121 VQVAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVYR 161
Score = 61 (26.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 23 EWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+W +S EK Y A++DK RY+EE+
Sbjct: 48 KWRSISKHEKAKYEALAKLDKARYQEEM 75
>UNIPROTKB|I3L7F6 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108
Pfam:PF09011 GO:GO:0006391 GO:GO:0070363
GeneTree:ENSGT00440000039001 EMBL:CU640450
Ensembl:ENSSSCT00000026177 Uniprot:I3L7F6
Length = 68
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 54 KLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS--DAYQSYLRRKRVKSLQANG 111
K + W LS +K+VY+ AE DK RY E+K + + + ++ L R+ +K
Sbjct: 5 KTINENWKNLSSSQKQVYIQLAEDDKVRYYNEMKSWEEQMVEVGRNDLIRRSMKHSAKKD 64
Query: 112 TEE 114
TEE
Sbjct: 65 TEE 67
>UNIPROTKB|B4DFR4 [details] [associations]
symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
Ensembl:ENST00000578044 Uniprot:B4DFR4
Length = 341
Score = 104 (41.7 bits), Expect = 0.00042, P = 0.00042
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 25 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 76
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+V K LG +W L+ EK+ Y +A+ DKKRY E ++Y
Sbjct: 50 QVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88
>UNIPROTKB|A8MRB2 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005739
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 CTD:7019 HOGENOM:HOG000139423 HOVERGEN:HBG106674
KO:K11830 EMBL:AC023170 UniGene:Hs.594250 GeneID:7019 KEGG:hsa:7019
HGNC:HGNC:11741 ChiTaRS:TFAM IPI:IPI00644515 RefSeq:NP_001257711.1
ProteinModelPortal:A8MRB2 SMR:A8MRB2 STRING:A8MRB2
Ensembl:ENST00000373895 ArrayExpress:A8MRB2 Bgee:A8MRB2
Uniprot:A8MRB2
Length = 214
Score = 101 (40.6 bits), Expect = 0.00047, P = 0.00047
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 27 LSLPEKKV---YLDRAEVDKKRYREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYR 83
+SL EK++ +L R + KK+ E+LK K W LS EK++Y+ A+ D+ RY
Sbjct: 127 MSL-EKEIMDKHLKRKAMTKKK--EKLKTVK---ENWKNLSDSEKELYIQHAKEDETRYH 180
Query: 84 EELKVYRKS--DAYQSYLRRKRVKSLQANGTEE 114
E+K + + + + L R+ +K + G EE
Sbjct: 181 NEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 213
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKR 81
++T++LGNEWSKL EK+ YLD A+ DK+R
Sbjct: 132 EITRMLGNEWSKLPPEEKQRYLDEADRDKER 162
Score = 97 (39.2 bits), Expect = 0.00066, P = 0.00066
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKR 45
+T++LGNEWSKL EK+ YLD A+ DK+R
Sbjct: 133 ITRMLGNEWSKLPPEEKQRYLDEADRDKER 162
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 104 (41.7 bits), Expect = 0.00050, P = 0.00050
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 60 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 111
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 104 (41.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 77 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 104 (41.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 77 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 128
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 104 (41.7 bits), Expect = 0.00058, P = 0.00058
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++ K++G W L+ EK+ YL+ E +K Y E +K Y S AY +Y+ K
Sbjct: 95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAK 146
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 86 (35.3 bits), Expect = 0.00058, P = 0.00058
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 19 LLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKV--TKLL-GNEWSKLSLP 66
LLG W +L+ E++ Y ++A DK+RY E K TKL G + K S P
Sbjct: 49 LLGKRWKELTSTEREPYEEKARQDKERYERERKEYDTKLANGEKTGKASAP 99
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 71 (30.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 17 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+K W +S EK + D A+VDK RY E+K
Sbjct: 42 SKKCSERWKTMSAKEKGKFEDMAKVDKARYEREMK 76
Score = 68 (29.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR---KSDAYQSYLRRKRVKSLQ 108
V K LG W+ ++ +K+ Y +A K++Y +++ YR K DA + + K KS +
Sbjct: 125 VAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV-KAEKSKK 183
Query: 109 ANGTEE 114
EE
Sbjct: 184 KKEEEE 189
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 74 (31.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 50 LKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS-DAYQSY 98
++V K G WS + EK Y R + + +Y EEL++YRK +A + Y
Sbjct: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKY 170
Score = 61 (26.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 23 EWSKLSLPEKKVYLDRAEVDKKRYREEL 50
+W +S EK Y A++DK RY+EE+
Sbjct: 48 KWRSISKHEKAKYEALAKLDKARYQEEM 75
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 75 (31.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQ-----SYLRRKRVKS 106
V K LG W+ LS EK+ Y+ +A K++Y +++ Y+ + + + RK+V+
Sbjct: 123 VAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEE 182
Query: 107 LQANGTEE 114
+ EE
Sbjct: 183 EEEEEEEE 190
Score = 60 (26.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 17 TKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+K W +S EK + + A+ DK RY E+K
Sbjct: 42 SKKCSERWKTMSSKEKSKFDEMAKADKVRYDREMK 76
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 170 151 0.00097 104 3 11 22 0.49 31
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 574 (61 KB)
Total size of DFA: 150 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.26u 0.08s 19.34t Elapsed: 00:00:12
Total cpu time: 19.26u 0.08s 19.34t Elapsed: 00:00:18
Start: Thu Aug 15 12:59:46 2013 End: Thu Aug 15 13:00:04 2013